Pregenerated sensors for PMS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026098Ensembl transcript IDs: ENSMUST00000027267.14, ENSMUST00000126412.2, ENSMUST00000126590.2, ENSMUST00000128337.8, ENSMUST00000133358.2, ENSMUST00000135246.8
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATGAACAGGGCACTGGCTaGCATGGGCTTCTTGACTGC | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHEQGTG*HGLLDC Trigger: GCAGTCAAGAAGCCCATGTCAGCCAGTGCCCTGTTC...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTTCTTGGGATTCTCTGTaGGGAACTGAGTGCGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGSWDSL*GTECGG Trigger: ACCACCGCACTCAGTTCCTCACAGAGAATCCCAAGA...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATATTCCATGTTGCCCATaGCAGCAGTTCCCAGAACCG | + |
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Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNIPCCP*QQFPEP Trigger: CGGTTCTGGGAACTGCTGTCATGGGCAACATGGAAT...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATGGTCTTCATGACTGCTaGTCTTCGAGGTGTAGTACT | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHGLHDC*SSRCST Trigger: AGTACTACACCTCGAAGATCAGCAGTCATGAAGACC...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTTGCGACTGTTCACAGTaGTGCTCAACAGATTCCATG | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGCDCSQ*CSTDSM Trigger: CATGGAATCTGTTGAGCAGCACTGTGAACAGTCGCA...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATAGATGTGAAGGCTTCTaGGAAAGTATGTGGCCACTG | + |
|
Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNRCEGF*ESMWPL Trigger: CAGTGGCCACATACTTTCTCAGAAGCCTTCACATCT...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATGTTACAGTTGTACCTTaGCCAAGATGTGAAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHVTVVP*PRCEGF Trigger: GAAGCCTTCACATCTTGGTCAAGGTACAACTGTAAC...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTATTAGAGCCATCCTGTaGTCTGGAACTCTGCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGIRAIL*SGTLLF Trigger: GAAAAGCAGAGTTCCAGATCACAGGATGGCTCTAAT...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTACTTCTCTCTGGGGTTaGAAGACTTGTGGAATTGTG | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGTSLWG*KTCGIV Trigger: CACAATTCCACAAGTCTTTCAACCCCAGAGAGAAGT...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTGGTGTAGTACTTCACTaGCATTACAGGGACATCTAC | + |
|
Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGGVVLH*HYRDIY Trigger: GTAGATGTCCCTGTAATGGCAGTGAAGTACTACACC...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATCTCCTGTACCATTCCTaGCATTTTCTCCTTGGATGT | + |
|
Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHLLYHS*HFLLGC Trigger: ACATCCAAGGAGAAAATGGCAGGAATGGTACAGGAG...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTGGTAAGCTGATCCACTaGCTCTTTCTTCAACTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGGKLIH*LFLQLL Trigger: CAACAGTTGAAGAAAGAGGCAGTGGATCAGCTTACC...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATGGGTTGAAAGACTTGTaGAATTGTGGTCTGCATCGT | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHGLKDL*NCGLHR Trigger: ACGATGCAGACCACAATTCCACAAGTCTTTCAACCC...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCTGCCATTTTCTCCTTaGATGTGCTCCATAGAACCT | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGLPFSP*MCSIEP Trigger: AGGTTCTATGGAGCACATCCAAGGAGAAAATGGCAG...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGCGTGGGTGACTACTaGTCACTTTACATGATAAGC | + |
|
Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNGVGDY*SLYMIS Trigger: GCTTATCATGTAAAGTGACCAGTAGTCACCCACGCC...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCTCTTGGTAAGTACATaGGTAGCTGTCTGGATAGAC | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGLLVST*VAVWID Trigger: GTCTATCCAGACAGCTACCCATGTACTTACCAAGAG...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTAAAAATGGGCGGCCATaGACACAGCCTTTAATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGKNGRP*TQPLIS Trigger: AGAAATTAAAGGCTGTGTTCATGGCCGCCCATTTTT...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGATCTTGAAGCCATTTaGTGTAAGACGAGGGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNDLEAI*CKTRVT Trigger: TGTGACCCTCGTCTTACAGCAAATGGCTTCAAGATC...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATTATTCCATAGAATaGGAGACACTGAGCCATTCC | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGHYSIE*ETLSHS Trigger: GGAATGGCTCAGTGTCTCCCATTCTATGGAATAATG...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATCCATCTAAAACATACTaGGTGCTAAAGTCATCAGCA | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHPSKTY*VLKSSA Trigger: TGCTGATGACTTTAGCACTCAGTATGTTTTAGATGG...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATACCTTGACCAAGATGTaGAGGCTTCTGAGAAAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNTLTKM*RLLRKY Trigger: ATACTTTCTCAGAAGCCTTCACATCTTGGTCAAGGT...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATTATATCCACCTCAGCTaGTGGAACATCAATTTTCAG | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHYIHLS*WNINFQ Trigger: CTGAAAATTGATGTTCCATCAGCTGAGGTGGATATA...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATAACAACCATGTTGGCTaGGGAAATATCTACTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHNNHVG*GNIYSV Trigger: AACAGAGTAGATATTTCCTCAGCCAACATGGTTGTT...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATTCATCAAGTTTTGGCTaGTTAGATGAGTCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHSSSFG*LDESFT Trigger: GGTGAAAGACTCATCTAATCAGCCAAAACTTGATGA...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTAAAGTATGTGGCCACTaGCATCTAAAACATACTGAG | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGKVCGH*HLKHTE Trigger: CTCAGTATGTTTTAGATGGCAGTGGCCACATACTTT...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTTTTTCTCCTTGGATGTaGTCCATAGAACCTACAGAA | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGFSPWM*SIEPTE Trigger: TTCTGTAGGTTCTATGGAGCACATCCAAGGAGAAAA...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCTTTTCCAGTGGTTCTaGAAGGAGTTTATGATTCTC | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGLFQWF*KEFMIL Trigger: GAGAATCATAAACTCCTTGCAGAACCACTGGAAAAG...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATCGTCCAGATCTGTTATaGATTACATCTGATGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHRPDLL*ITSDVL Trigger: CAGAACATCAGATGTAATCCATAACAGATCTGGACG...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATGGAACTCTGCTTTTCTaGCAAATAACTGCCTTATTA | + |
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Preference number: 4 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHGTLLF*QITALL Trigger: TAATAAGGCAGTTATTTGGCAGAAAAGCAGAGTTCC...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR GCA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTTTTTCCTCGTATTTGTaGTTTTCCTCTTCACTCAGT | + |
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Preference number: 4 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGFSSYL*FSSSLS Trigger: ACTGAGTGAAGAGGAAAAGCACAAATACGAGGAAAA...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATAATTGGCTTTTCCAGTaGTTCTGCAAGGAGTTTATG | + |
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Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNNWLFQ*FCKEFM Trigger: CATAAACTCCTTGCAGAACCACTGGAAAAGCCAATT...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATAGTACTGGAAACTCCTaGTGTCAATCTGATCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNSTGNS*CQSDLE Trigger: TTCAAGATCAGATTGACACCAGGAGTTTCCAGTACT...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR TCA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATTTTTCATTCTGGGACTaGAAGAGCTCATCAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNFSFWD*KSSSSF Trigger: AAAACTTGATGAGCTCTTTCAGTCCCAGAATGAAAA...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS TCA 90 bp | TCTGCGACTGTTCACAGTGCTGCTCAACAGATTCCATGTTGCCCATaGCAGCAGTTCCCAGAACCGACATTAGAGCCATCCTGTGATCTG | + |
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Preference number: 5 (lower is better) Translates to: SATVHSAAQQIPCCP*QQFPEPTLEPSCDL Trigger: CAGATCACAGGATGGCTCTAATGTCGGTTCTGGGAACTGCTGTCATGGGCAACATGGAATCTGTTGAGCAGCACTGTGAACAGTCGCAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 90 bp | TTTTCAATGAGCTCTTTCACAACGCTGACCACTGACGTGATTGTCTaGGAACTGGACAGGAGGCGAACTGTTGCTGCAGGCAACTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: FSMSSFTTLTTDVIV*ELDRRRTVAAGNCF Trigger: GAAACAGTTGCCTGCAGCAACAGTTCGCCTCCTGTCCAGTTCTCAGACAATCACGTCAGTGGTCAGCGTTGTGAAAGAGCTCATTGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027267.14 ENSMUST00000126412.2 ENSMUST00000126590.2 ENSMUST00000128337.8 ENSMUST00000133358.2 ENSMUST00000135246.8 |
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| CDS GCA 90 bp | TCCAAGGTCTTCATGACTGCTGATCTTCGAGGTGTAGTACTTCACTaGCATTACAGGGACATCTACAGCCTTGATGCCCTCACCATTGTC | + |
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Preference number: 5 (lower is better) Translates to: SKVFMTADLRGVVLH*HYRDIYSLDALTIV Trigger: GACAATGGTGAGGGCATCAAGGCTGTAGATGTCCCTGTAATGGCAGTGAAGTACTACACCTCGAAGATCAGCAGTCATGAAGACCTTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027267.14 ENSMUST00000128337.8 ENSMUST00000133358.2 ENSMUST00000135246.8 |
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| CDS TCA 90 bp | TCGAGGTGTAGTACTTCACTGCCATTACAGGGACATCTACAGCCTTaGTGCCCTCACCATTGTCCCGAATCTCAATTTTATCAAATCCAT | + |
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Preference number: 5 (lower is better) Translates to: SRCSTSLPLQGHLQP*CPHHCPESQFYQIH Trigger: ATGGATTTGATAAAATTGAGATTCGGGACAATGGTGAGGGCATCAAGGCTGTAGATGTCCCTGTAATGGCAGTGAAGTACTACACCTCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000027267.14 ENSMUST00000126590.2 ENSMUST00000128337.8 ENSMUST00000133358.2 ENSMUST00000135246.8 |
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| CDS TCA 90 bp | AGCAGATGTCCTTGTTGTAACTACCACCTCCGCAACATTACATATTaGCCCCAAGGCTTCACCACGAAAACCATAAGTTGTCAGATTTCC | + |
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Preference number: 5 (lower is better) Translates to: SRCPCCNYHLRNITY*PQGFTTKTISCQIS Trigger: GGAAATCTGACAACTTATGGTTTTCGTGGTGAAGCCTTGGGGTCAATATGTAATGTTGCGGAGGTGGTAGTTACAACAAGGACATCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027267.14 ENSMUST00000128337.8 ENSMUST00000135246.8 |
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| CDS TCA 90 bp | TTCATTCTGGGACTGAAAGAGCTCATCAAGTTTTGGCTGATTAGATaGGTCTTTCACCTTATGTTTCTGTGTCCAGCCCCACGAACTGGT | + |
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Preference number: 5 (lower is better) Translates to: FILGLKELIKFWLIR*VFHLMFLCPAPRTG Trigger: ACCAGTTCGTGGGGCTGGACACAGAAACATAAGGTGAAAGACTCATCTAATCAGCCAAAACTTGATGAGCTCTTTCAGTCCCAGAATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS TCA 90 bp | CACGAAAACCATAAGTTGTCAGATTTCCAAGGTCTTCATGACTGCTaGTCTTCGAGGTGTAGTACTTCACTGCCATTACAGGGACATCTA | + |
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Preference number: 5 (lower is better) Translates to: HENHKLSDFQGLHDC*SSRCSTSLPLQGHL Trigger: TAGATGTCCCTGTAATGGCAGTGAAGTACTACACCTCGAAGATCAGCAGTCATGAAGACCTTGGAAATCTGACAACTTATGGTTTTCGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027267.14 ENSMUST00000128337.8 ENSMUST00000135246.8 |
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| CDS TCA 90 bp | ATGTACTGGCCGACTATTAATAAAGATGAAACTTCTCTCTGGGGTTaGAAGACTTGTGGAATTGTGGTCTGCATCGTGCTTTGGGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: MYWPTINKDETSLWG*KTCGIVVCIVLWEE Trigger: TTCTTCCCAAAGCACGATGCAGACCACAATTCCACAAGTCTTTCAACCCCAGAGAGAAGTTTCATCTTTATTAATAGTCGGCCAGTACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS GCA 90 bp | TCACAGGTTCGATATTCTCTCCCATTGAATTACACAAATTTCCTTTaGTCCAATCGTCTGCACAGATTTCCAGAGCTTTCTCAGGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: SQVRYSLPLNYTNFL*SNRLHRFPELSQEV Trigger: CACTTCCTGAGAAAGCTCTGGAAATCTGTGCAGACGATTGGAGCAAAGGAAATTTGTGTAATTCAATGGGAGAGAATATCGAACCTGTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS-3UTR CAA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATCCGCAACATTACATATaGACCCCAAGGCTTCACCAC | + |
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Preference number: 5 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHPQHYI*TPRLHH Trigger: GTGGTGAAGCCTTGGGGTCAATATGTAATGTTGCGG...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATCCTGCCATTTTCTCCTaGGATGTGCTCCATAGAACC | + |
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Preference number: 5 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHPAIFS*DVLHRT Trigger: GGTTCTATGGAGCACATCCAAGGAGAAAATGGCAGG...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTGCTGACATGGGCTTCTaGACTGCTCGACTGCTAATT | + |
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Preference number: 5 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGADMGF*TARLLI Trigger: AATTAGCAGTCGAGCAGTCAAGAAGCCCATGTCAGC...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATCTTGGACATCCTCTCTaGGTAAGTACATGGGTAGCT | + |
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Preference number: 5 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHLGHPL*VSTWVA Trigger: AGCTACCCATGTACTTACCAAGAGAGGATGTCCAAG...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTGAAAGACTTGTGGAATaGTGGTCTGCATCGTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGERLVE*WSASCF Trigger: AAAGCACGATGCAGACCACAATTCCACAAGTCTTTC...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATCTGGGGTTGAAAGACTaGTGGAATTGTGGTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNLGLKD*WNCGLH Trigger: ATGCAGACCACAATTCCACAAGTCTTTCAACCCCAG...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | ATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTCATGCCTTTTCCTCGTATTaGTGCTTTTCCTCTTCACTC | + |
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Preference number: 5 (lower is better) Translates to: IGQSGLRTTSVSIVTNGHAFSSY*CFSSSL Trigger: GAGTGAAGAGGAAAAGCACAAATACGAGGAAAAGGC...ATGACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS TCA 90 bp | TCTGTTAATATAATTGGCTTTTCCAGTGGTTCTGCAAGGAGTTTATaGTTCTCAAGAAGTCTTTTAAATAGCAGGGCTTCCTCCACTCTG | + |
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Preference number: 5 (lower is better) Translates to: SVNIIGFSSGSARSL*FSRSLLNSRASSTL Trigger: CAGAGTGGAGGAAGCCCTGCTATTTAAAAGACTTCTTGAGAATCATAAACTCCTTGCAGAACCACTGGAAAAGCCAATTATATTAACAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATAACTTCTCTCTGGGGTaGAAAGACTTGTGGAATTGT | + |
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Preference number: 5 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNNFSLG*KDLWNC Trigger: ACAATTCCACAAGTCTTTCAACCCCAGAGAGAAGTT...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | ATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATGGTTCTAGATTCATCCTTTaGGAAGTGAATAGCCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: MIGQSGLRTTSVSIVTNGSRFIL*EVNSRS Trigger: ACTTCGGCTATTCACTTCCAAAAGGATGAATCTAGA...ACCATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS-3UTR CAA 90 bp | TACATGATAGGACAAAGTGGGTTAAGAACCACATCAGTTTCCATAGTAACTAATCACGAAAACCATAAGTaGTCAGATTTCCAAGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: YMIGQSGLRTTSVSIVTNHENHK*SDFQGL Trigger: AAGACCTTGGAAATCTGACAACTTATGGTTTTCGTG...ATTAGTTACTATGGAAACTGATGTGGTTCTTAACCCACTTTGTCCTATCATGTA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS TCA 72 bp | GTTCACAGTGCTGCTCAACAGATTCCATGTTGCCCATaGCAGCAGTTCCCAGAACCGACATTAGAGCCATCC | + |
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Preference number: 6 (lower is better) Translates to: VHSAAQQIPCCP*QQFPEPTLEPS Trigger: GGATGGCTCTAATGTCGGTTCTGGGAACTGCTGTCATGGGCAACATGGAATCTGTTGAGCAGCACTGTGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | GGAGTTTTCAATGAGCTCTTTCACAACGCTGACCACTaGCGTGATTGTCTGAGAACTGGACAGGAGGCGAAC | + |
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Preference number: 6 (lower is better) Translates to: GVFNELFHNADH*RDCLRTGQEAN Trigger: GTTCGCCTCCTGTCCAGTTCTCAGACAATCACGTCAGTGGTCAGCGTTGTGAAAGAGCTCATTGAAAACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000027267.14 ENSMUST00000126412.2 ENSMUST00000126590.2 ENSMUST00000128337.8 ENSMUST00000133358.2 ENSMUST00000135246.8 |
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| CDS CAA 72 bp | TGCGACTGTTCACAGTGCTGCTCAACAGATTCCATGTaGCCCATGACAGCAGTTCCCAGAACCGACATTAGA | + |
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Preference number: 6 (lower is better) Translates to: CDCSQCCSTDSM*PMTAVPRTDIR Trigger: TCTAATGTCGGTTCTGGGAACTGCTGTCATGGGCAACATGGAATCTGTTGAGCAGCACTGTGAACAGTCGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | ACAGCAGTTCCCAGAACCGACATTAGAGCCATCCTGTaGTCTGGAACTCTGCTTTTCTGCCAAATAACTGCC | + |
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Preference number: 6 (lower is better) Translates to: TAVPRTDIRAIL*SGTLLFCQITA Trigger: GGCAGTTATTTGGCAGAAAAGCAGAGTTCCAGATCACAGGATGGCTCTAATGTCGGTTCTGGGAACTGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS GCA 72 bp | TTCATGACTGCTGATCTTCGAGGTGTAGTACTTCACTaGCATTACAGGGACATCTACAGCCTTGATGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: FMTADLRGVVLH*HYRDIYSLDAL Trigger: GAGGGCATCAAGGCTGTAGATGTCCCTGTAATGGCAGTGAAGTACTACACCTCGAAGATCAGCAGTCATGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000027267.14 ENSMUST00000128337.8 ENSMUST00000133358.2 ENSMUST00000135246.8 |
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| CDS CCA 72 bp | GGACATCCTCTCTTGGTAAGTACATGGGTAGCTGTCTaGATAGACGGACGGCTTCTCCCTCCAGATAATTTA | + |
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Preference number: 6 (lower is better) Translates to: GHPLLVSTWVAV*IDGRLLPPDNL Trigger: TAAATTATCTGGAGGGAGAAGCCGTCCGTCTATCCAGACAGCTACCCATGTACTTACCAAGAGAGGATGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027267.14 |
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| CDS CAA 90 bp | CCCATCTCCCCCACTTCCTCCTGTACCATTCCTGCCATTTTCTCCTaGGATGTGCTCCATAGAACCTACAGAATGAGTTTCACTGTGATT | + |
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Preference number: 6 (lower is better) Translates to: PISPTSSCTIPAIFS*DVLHRTYRMSFTVI Trigger: AATCACAGTGAAACTCATTCTGTAGGTTCTATGGAGCACATCCAAGGAGAAAATGGCAGGAATGGTACAGGAGGAAGTGGGGGAGATGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS CAA 90 bp | TCTCTGGGGTTGAAAGACTTGTGGAATTGTGGTCTGCATCGTGCTTaGGGAAGAATCCACTTAGGTAAATCTGCGACTGTTCACAGTGCT | + |
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Preference number: 6 (lower is better) Translates to: SLGLKDLWNCGLHRA*GRIHLGKSATVHSA Trigger: AGCACTGTGAACAGTCGCAGATTTACCTAAGTGGATTCTTCCCAAAGCACGATGCAGACCACAATTCCACAAGTCTTTCAACCCCAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS CAA 72 bp | CCCACTTCCTCCTGTACCATTCCTGCCATTTTCTCCTaGGATGTGCTCCATAGAACCTACAGAATGAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: PTSSCTIPAIFS*DVLHRTYRMSF Trigger: GAAACTCATTCTGTAGGTTCTATGGAGCACATCCAAGGAGAAAATGGCAGGAATGGTACAGGAGGAAGTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS CCA 72 bp | AAACTTCTCTCTGGGGTTGAAAGACTTGTGGAATTGTaGTCTGCATCGTGCTTTGGGAAGAATCCACTTAGG | + |
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Preference number: 6 (lower is better) Translates to: KLLSGVERLVEL*SASCFGKNPLR Trigger: CCTAAGTGGATTCTTCCCAAAGCACGATGCAGACCACAATTCCACAAGTCTTTCAACCCCAGAGAGAAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | AGTACTTCACTGCCATTACAGGGACATCTACAGCCTTaGTGCCCTCACCATTGTCCCGAATCTCAATTTTAT | + |
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Preference number: 6 (lower is better) Translates to: STSLPLQGHLQP*CPHHCPESQFY Trigger: ATAAAATTGAGATTCGGGACAATGGTGAGGGCATCAAGGCTGTAGATGTCCCTGTAATGGCAGTGAAGTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000027267.14 ENSMUST00000126590.2 ENSMUST00000128337.8 ENSMUST00000133358.2 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | CCTTGTTGTAACTACCACCTCCGCAACATTACATATTaGCCCCAAGGCTTCACCACGAAAACCATAAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: PCCNYHLRNITY*PQGFTTKTISC Trigger: ACAACTTATGGTTTTCGTGGTGAAGCCTTGGGGTCAATATGTAATGTTGCGGAGGTGGTAGTTACAACAAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027267.14 ENSMUST00000128337.8 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | CATAAGTTGTCAGATTTCCAAGGTCTTCATGACTGCTaGTCTTCGAGGTGTAGTACTTCACTGCCATTACAG | + |
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Preference number: 6 (lower is better) Translates to: HKLSDFQGLHDC*SSRCSTSLPLQ Trigger: CTGTAATGGCAGTGAAGTACTACACCTCGAAGATCAGCAGTCATGAAGACCTTGGAAATCTGACAACTTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027267.14 ENSMUST00000128337.8 ENSMUST00000135246.8 |
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| CDS CAA 72 bp | TTGAAAGACTTGTGGAATTGTGGTCTGCATCGTGCTTaGGGAAGAATCCACTTAGGTAAATCTGCGACTGTT | + |
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Preference number: 6 (lower is better) Translates to: LKDLWNCGLHRA*GRIHLGKSATV Trigger: AACAGTCGCAGATTTACCTAAGTGGATTCTTCCCAAAGCACGATGCAGACCACAATTCCACAAGTCTTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | CCGACTATTAATAAAGATGAAACTTCTCTCTGGGGTTaGAAGACTTGTGGAATTGTGGTCTGCATCGTGCTT | + |
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Preference number: 6 (lower is better) Translates to: PTINKDETSLWG*KTCGIVVCIVL Trigger: AAGCACGATGCAGACCACAATTCCACAAGTCTTTCAACCCCAGAGAGAAGTTTCATCTTTATTAATAGTCGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS CAA 90 bp | TTCACAGGTTCGATATTCTCTCCCATTGAATTACACAAATTTCCTTaGCTCCAATCGTCTGCACAGATTTCCAGAGCTTTCTCAGGAAGT | + |
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Preference number: 6 (lower is better) Translates to: FTGSIFSPIELHKFP*LQSSAQISRAFSGS Trigger: ACTTCCTGAGAAAGCTCTGGAAATCTGTGCAGACGATTGGAGCAAAGGAAATTTGTGTAATTCAATGGGAGAGAATATCGAACCTGTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | ATCTGTTTCGGCTGTTTGACTAACAACCATGTTGGCTaGGGAAATATCTACTCTGTTATTTTCAGAAGACTC | + |
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Preference number: 6 (lower is better) Translates to: ICFGCLTNNHVG*GNIYSVIFRRL Trigger: GAGTCTTCTGAAAATAACAGAGTAGATATTTCCTCAGCCAACATGGTTGTTAGTCAAACAGCCGAAACAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS CAA 72 bp | GCACTAAAATTTTCACAGGTTCGATATTCTCTCCCATaGAATTACACAAATTTCCTTTGCTCCAATCGTCTG | + |
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Preference number: 6 (lower is better) Translates to: ALKFSQVRYSLP*NYTNFLCSNRL Trigger: CAGACGATTGGAGCAAAGGAAATTTGTGTAATTCAATGGGAGAGAATATCGAACCTGTGAAAATTTTAGTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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| CDS TCA 72 bp | TCCATTTTATTAAAAAGCACATCTGTTTCGGCTGTTTaGCTAACAACCATGTTGGCTGAGGAAATATCTACT | + |
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Preference number: 6 (lower is better) Translates to: SILLKSTSVSAV*LTTMLAEEIST Trigger: AGTAGATATTTCCTCAGCCAACATGGTTGTTAGTCAAACAGCCGAAACAGATGTGCTTTTTAATAAAATGGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027267.14 ENSMUST00000135246.8 |
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