Pregenerated sensors for PMP22 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018217Ensembl transcript IDs: ENSMUST00000018361.10, ENSMUST00000108700.2, ENSMUST00000108701.8, ENSMUST00000108702.8
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCGGTCAGGGCTTTTCGTCTGTGAGTGCTTAGGGCTTCACACATaGATTCGGGCAGTGGATACTCCTGCTAAATGCACTGGGTCACCC | + |
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Preference number: 1 (lower is better) Translates to: FRSGLFVCECLGLHT*IRAVDTPAKCTGSP Trigger: GGGTGACCCAGTGCATTTAGCAGGAGTATCCACTGCCCGAATCCATGTGTGAAGCCCTAAGCACTCACAGACGAAAAGCCCTGACCGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR GCA 90 bp | CCCACACTTTGGTTATCCTATGAGGTTGAGTGGGAGGGAGGTATCTaGTTTCAGATGAAAGGGGGCCACGTGGAGTTTTTATGTCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: PTLWLSYEVEWEGGI*FQMKGGHVEFLCLS Trigger: GCTCAGACATAAAAACTCCACGTGGCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAACCAAAGTGTGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 90 bp | CACCATTTCACAGATTGCTTGTCTCTGACTTCTCATTTAAACGTGTaGCCCCAGTACTCCGTCTACAGGGTCAAGTGTTCAGGAGCCACC | + |
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Preference number: 1 (lower is better) Translates to: HHFTDCLSLTSHLNV*PQYSVYRVKCSGAT Trigger: GGTGGCTCCTGAACACTTGACCCTGTAGACGGAGTACTGGGGCCACACGTTTAAATGAGAAGTCAGAGACAAGCAATCTGTGAAATGGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 90 bp | GGAGTCTTAGCATCAGAAGGACACCGTATATACATCTACAGTTGGTaGCCAATACAAGTCATCGCCAGACAGTCCTTGGAGGCACAGAAC | + |
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Preference number: 1 (lower is better) Translates to: GVLASEGHRIYIYSW*PIQVIARQSLEAQN Trigger: GTTCTGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGCTAAGACTCC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 90 bp | TCTGGAGTCTTAGCATCAGAAGGACACCGTATATACATCTACAGTTaGTGGCCAATACAAGTCATCGCCAGACAGTCCTTGGAGGCACAG | + |
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Preference number: 1 (lower is better) Translates to: SGVLASEGHRIYIYS*WPIQVIARQSLEAQ Trigger: CTGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGCTAAGACTCCAGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 90 bp | CATAGTGTAAAGGTCTTCAACTGTCTGGGGTTTGTCCCCACACTTTaGTTATCCTATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAG | + |
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Preference number: 1 (lower is better) Translates to: HSVKVFNCLGFVPTL*LSYEVEWEGGICFQ Trigger: CTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAACCAAAGTGTGGGGACAAACCCCAGACAGTTGAAGACCTTTACACTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR TCA 90 bp | TTTGTATCGGGTCTCCATTCTGCTGTATCGCATAAAACTGTTAATTaGGTTTCCAGTGAGTGGTTTAAACGATTAGTAATAACAAGGAAT | + |
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Preference number: 1 (lower is better) Translates to: FVSGLHSAVSHKTVN*VSSEWFKRLVITRN Trigger: ATTCCTTGTTATTACTAATCGTTTAAACCACTCACTGGAAACTCAATTAACAGTTTTATGCGATACAGCAGAATGGAGACCCGATACAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCAGACAGTCCTTGGAGGCACAGAACACTCTAGACCCAGAAAGCCAGGGAACCTGATGCTCCGACCGTaGGAAAACTGTGGGACTGAC | + |
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Preference number: 2 (lower is better) Translates to: RQTVLGGTEHSRPRKPGNLMLRP*ENCGTD Trigger: GTCAGTCCCACAGTTTTCTCACGGTCGGAGCATCAG...GTTCCCTGGCTTTCTGGGTCTAGAGTGTTCTGTGCCTCCAAGGACTGTCTGGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGTGTTCAGGAGCCACCAGCTATTACTGTTTTTGCAGAGGGTTCCGGTCAGGCTTCCTCCCTCCCTGTaGACCCTATGCGCGCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: QVFRSHQLLLFLQRVPVRLPPSL*TLCALR Trigger: TCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAG...CCTGACCGGAACCCTCTGCAAAAACAGTAATAGCTGGTGGCTCCTGAACACTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CAA 90 bp | TACATCTACAGTTGGTGGCCAATACAAGTCATCGCCAGACAGTCCTaGGAGGCACAGAACACTCTAGACCCAGAAAGCCAGGGAACTCGC | + |
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Preference number: 2 (lower is better) Translates to: YIYSWWPIQVIARQS*EAQNTLDPESQGTR Trigger: GCGAGTTCCCTGGCTTTCTGGGTCTAGAGTGTTCTGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CCA 90 bp | TATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAGATGAAAGGGGGCCACGTGGCGTTCTGTTTGGTTTaGCTTGCGTTTGGGTTTGGG | + |
|
Preference number: 2 (lower is better) Translates to: YEVEWEGGICFQMKGGHVAFCLV*LAFGFG Trigger: CCCAAACCCAAACGCAAGCCAAACCAAACAGAACGC...CACGTGGCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CCA 90 bp | AGAGAAAGCAAGCAAAAACAAGAAAGGTCTGGAGTCTTAGCATCAGAAGGACACCTTCCTCCCTCCCTGTaGACCCTATGCGCGCTCAGA | + |
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Preference number: 2 (lower is better) Translates to: RESKQKQERSGVLASEGHLPPSL*TLCALR Trigger: TCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAG...GTGTCCTTCTGATGCTAAGACTCCAGACCTTTCTTGTTTTTGCTTGCTTTCTCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CAA 90 bp | GTCTGGAGTCTTAGCATCAGAAGGACACCGTATATACATCTACAGTaGGTGGCCAATACAAGTCATCGCCAGACAGTCCTTGGAGGCACA | + |
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Preference number: 2 (lower is better) Translates to: VWSLSIRRTPYIHLQ*VANTSHRQTVLGGT Trigger: TGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGCTAAGACTCCAGAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGACACCGTATATACATCTACAGTTGGTGGCCAATACAAGTCATCGCCAGACTCTAGATGCTCGTCCTaGTGCTCCGACCGTGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: KDTVYTSTVGGQYKSSPDSRCSS*CSDREK Trigger: TTTCTCACGGTCGGAGCATCAGGACGAGCATCTAGA...GTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CCA 90 bp | TTATCCTATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAGATGAAAGGGGGCCAACTGCGTTCTGTTTaGTTTGGCTTGCGTTTGGGT | + |
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Preference number: 2 (lower is better) Translates to: LSYEVEWEGGICFQMKGGQLRSV*FGLRLG Trigger: ACCCAAACGCAAGCCAAACCAAACAGAACGCAGTTG...GCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CCA 90 bp | CTTTGGTTATCCTATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAGATGAAACAACTGCGTTCTGTTTaGTTTGGCTTGCGTTTGGGT | + |
|
Preference number: 2 (lower is better) Translates to: LWLSYEVEWEGGICFQMKQLRSV*FGLRLG Trigger: ACCCAAACGCAAGCCAAACCAAACAGAACGCAGTTG...TTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAACCAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR GCA 90 bp | AAGCAAGCAAAAACAAGAAAGGTCTGGAGTCTTAGCATCAGAAGGACACCGTATCACCATTTCACAGATTaGTTGTCTCTGACTTCTCAT | + |
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Preference number: 2 (lower is better) Translates to: KQAKTRKVWSLSIRRTPYHHFTD*LSLTSH Trigger: ATGAGAAGTCAGAGACAAGCAATCTGTGAAATGGTG...ATACGGTGTCCTTCTGATGCTAAGACTCCAGACCTTTCTTGTTTTTGCTTGCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CCA 90 bp | CATCTTAGTCCACACAGTTGGTATAAAATCAGAGAAAGCAAGCAAAAACAAGAATCCTATGAGGTTGAGTaGGAGGGAGGTATCTGCTTT | + |
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Preference number: 2 (lower is better) Translates to: HLSPHSWYKIRESKQKQESYEVE*EGGICF Trigger: AAAGCAGATACCTCCCTCCCACTCAACCTCATAGGA...TTCTTGTTTTTGCTTGCTTTCTCTGATTTTATACCAACTGTGTGGACTAAGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | TATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAGATGAAAGGGGGCCACGTGTCTGTTTGGTTTGGCTaGCGTTTGGGTTTGGGGCTA | + |
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Preference number: 3 (lower is better) Translates to: YEVEWEGGICFQMKGGHVSVWFG*RLGLGL Trigger: TAGCCCCAAACCCAAACGCAAGCCAAACCAAACAGA...CACGTGGCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | TACAGTTGGTGGCCAATACAAGTCATCGCCAGACAGTCCTTGGAGGCACAGAACGGTTATCCTATGAGGTaGAGTGGGAGGGAGGTATCT | + |
|
Preference number: 3 (lower is better) Translates to: YSWWPIQVIARQSLEAQNGYPMR*SGREVS Trigger: AGATACCTCCCTCCCACTCAACCTCATAGGATAACC...GTTCTGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR GCA 72 bp | GTCAAGTGTTCAGGAGCCACCAGCTATTACTGTTTTTaGAGAGGGTTCCGGTCAGGGCTTTTCGTCTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: VKCSGATSYYCF*RGFRSGLFVCE Trigger: CTCACAGACGAAAAGCCCTGACCGGAACCCTCTGCAAAAACAGTAATAGCTGGTGGCTCCTGAACACTTGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 72 bp | TTTGTCCCCACACTTTGGTTATCCTATGAGGTTGAGTaGGAGGGAGGTATCTGCTTTCAGATGAAAGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: FVPTLWLSYEVE*EGGICFQMKGG Trigger: GCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAACCAAAGTGTGGGGACAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | AAGGACACCGTATATACATCTACAGTTGGTGGCCAATACAAGTCATCGCCAGACTGGTTTGGCTTGCGTTaGGGTTTGGGGCTAGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: KDTVYTSTVGGQYKSSPDWFGLR*GLGLAL Trigger: AAGAGCTAGCCCCAAACCCAAACGCAAGCCAAACCA...GTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR GCA 72 bp | TGGTTATCCTATGAGGTTGAGTGGGAGGGAGGTATCTaGTTTCAGATGAAAGGGGGCCACGTGGAGTTTTTA | + |
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Preference number: 3 (lower is better) Translates to: WLSYEVEWEGGI*FQMKGGHVEFL Trigger: TAAAAACTCCACGTGGCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 72 bp | GCATCAGAAGGACACCGTATATACATCTACAGTTGGTaGCCAATACAAGTCATCGCCAGACAGTCCTTGGAG | + |
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Preference number: 3 (lower is better) Translates to: ASEGHRIYIYSW*PIQVIARQSLE Trigger: CTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | AGAGAAAGCAAGCAAAAACAAGAAAGGTCTGGAGTCTTAGCATCAGAAGGACACATCGCCAGACAGTCCTaGGAGGCACAGAACACTCTA | + |
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Preference number: 3 (lower is better) Translates to: RESKQKQERSGVLASEGHIARQS*EAQNTL Trigger: TAGAGTGTTCTGTGCCTCCAAGGACTGTCTGGCGAT...GTGTCCTTCTGATGCTAAGACTCCAGACCTTTCTTGTTTTTGCTTGCTTTCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | AAGCAAGCAAAAACAAGAAAGGTCTGGAGTCTTAGCATCAGAAGGACACCGTATATCGCCAGACAGTCCTaGGAGGCACAGAACACTCTA | + |
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Preference number: 3 (lower is better) Translates to: KQAKTRKVWSLSIRRTPYIARQS*EAQNTL Trigger: TAGAGTGTTCTGTGCCTCCAAGGACTGTCTGGCGAT...ATACGGTGTCCTTCTGATGCTAAGACTCCAGACCTTTCTTGTTTTTGCTTGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 72 bp | ACAGATTGCTTGTCTCTGACTTCTCATTTAAACGTGTaGCCCCAGTACTCCGTCTACAGGGTCAAGTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: TDCLSLTSHLNV*PQYSVYRVKCS Trigger: TGAACACTTGACCCTGTAGACGGAGTACTGGGGCCACACGTTTAAATGAGAAGTCAGAGACAAGCAATCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | TACAGTTGGTGGCCAATACAAGTCATCGCCAGACAGTCCTTGGAGGCACAGAACACAAAGATACTGAGCTaGGTTATAGTGTTAGGATGT | + |
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Preference number: 3 (lower is better) Translates to: YSWWPIQVIARQSLEAQNTKILS*VIVLGC Trigger: ACATCCTAACACTATAACCAAGCTCAGTATCTTTGT...GTTCTGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | AAGCAAGCAAAAACAAGAAAGGTCTGGAGTCTTAGCATCAGAAGGACACCGTATGGTTATCCTATGAGGTaGAGTGGGAGGGAGGTATCT | + |
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Preference number: 3 (lower is better) Translates to: KQAKTRKVWSLSIRRTPYGYPMR*SGREVS Trigger: AGATACCTCCCTCCCACTCAACCTCATAGGATAACC...ATACGGTGTCCTTCTGATGCTAAGACTCCAGACCTTTCTTGTTTTTGCTTGCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CCA 72 bp | TTAGCATCAGAAGGACACCGTATATACATCTACAGTTaGTGGCCAATACAAGTCATCGCCAGACAGTCCTTG | + |
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Preference number: 3 (lower is better) Translates to: LASEGHRIYIYS*WPIQVIARQSL Trigger: CAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGCTAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | TTATCCTATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAGATGAAAGGGGGCACAAAGATACTGAGCTaGGTTATAGTGTTAGGATGT | + |
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Preference number: 3 (lower is better) Translates to: LSYEVEWEGGICFQMKGGTKILS*VIVLGC Trigger: ACATCCTAACACTATAACCAAGCTCAGTATCTTTGT...GCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATAGGATAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR GCA 72 bp | ATATACATCTTCAATCAACAGCAATCCCCACTCAACTaGGTTCTGTTTGGTTTGGCTTGCGTTTGGGTTTGG | + |
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Preference number: 3 (lower is better) Translates to: IYIFNQQQSPLN*VLFGLACVWVW Trigger: CCAAACCCAAACGCAAGCCAAACCAAACAGAACGCAGTTGAGTGGGGATTGCTGTTGATTGAAGATGTATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR-3UTR CAA 90 bp | CATCTTAGTCCACACAGTTGGTATAAAATCAGAGAAAGCAAGCAAAAACAAGAATGCGTTCTGTTTGGTTaGGCTTGCGTTTGGGTTTGG | + |
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Preference number: 3 (lower is better) Translates to: HLSPHSWYKIRESKQKQECVLFG*ACVWVW Trigger: CCAAACCCAAACGCAAGCCAAACCAAACAGAACGCA...TTCTTGTTTTTGCTTGCTTTCTCTGATTTTATACCAACTGTGTGGACTAAGATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR TCA 90 bp | CTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCTAGACGGAGGAGTAGTCAGTGTTaGCATGCCACTCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: LVSFLPPCGPYARSEPRRRSSQC*HATHCA Trigger: GGCACAGTGAGTGGCATGTCAACACTGACTACTCCT...CCGTCTAGGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR CCA 90 bp | TTGTTCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCGCCTCACTGTGTAGATaGCCGCTGCACTCATCACGC | + |
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Preference number: 4 (lower is better) Translates to: LFSGFLPPSLWTLCALRAASLCR*PLHSSR Trigger: GCGTGATGAGTGCAGCGGCCATCTACACAGTGAGGC...GGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGAACAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | TTGTTCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCGTGGCCTGGACAGACTaGAGCCATTCGCTCACTGAT | + |
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Preference number: 4 (lower is better) Translates to: LFSGFLPPSLWTLCALRAVAWTD*SHSLTD Trigger: ATCAGTGAGCGAATGGCTGCAGTCTGTCCAGGCCAC...GGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGAACAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | TTGTTCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCTGTGTAGATGGCCGCTaGACTCATCACGCACAGACC | + |
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Preference number: 4 (lower is better) Translates to: LFSGFLPPSLWTLCALRACVDGR*THHAQT Trigger: GGTCTGTGCGTGATGAGTGCAGCGGCCATCTACACA...GGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGAACAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | TCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCTAGATGTGTAGATGGCCGCTaGACTCATCACGCACAGACC | + |
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Preference number: 4 (lower is better) Translates to: SLVSFLPPCGPYARSEPRCVDGR*THHAQT Trigger: GGTCTGTGCGTGATGAGTGCAGCGGCCATCTACACA...TCTAGGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | CTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCTAGACGGGATGTGGTACAGTTCTaGCAGAGATCAGTCGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: LVSFLPPCGPYARSEPRRDVVQF*QRSVVC Trigger: ACACACGACTGATCTCTGGCAGAACTGTACCACATC...CCGTCTAGGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | TCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCTAGAGATGTGGTACAGTTCTaGCAGAGATCAGTCGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SLVSFLPPCGPYARSEPRDVVQF*QRSVVC Trigger: ACACACGACTGATCTCTGGCAGAACTGTACCACATC...TCTAGGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR CCA 90 bp | TTGTTCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCGTGAGAGTGAAGAGCTaGCAGAAGAACAGGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: LFSGFLPPSLWTLCALRAVRVKS*QKNRNR Trigger: TCTGTTCCTGTTCTTCTGCCAGCTCTTCACTCTCAC...GGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGAACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS-3UTR TCA 90 bp | GTGTTCAGGAGCCACCAGCTATTACTGTTTTTGCAGAGGGTTCCGGTCAGGGCTAGGAGTAGTCAGTGTTaGCATGCCACTCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: VFRSHQLLLFLQRVPVRARSSQC*HATHCA Trigger: GGCACAGTGAGTGGCATGTCAACACTGACTACTCCT...AGCCCTGACCGGAACCCTCTGCAAAAACAGTAATAGCTGGTGGCTCCTGAACAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | CAAGTGTTCAGGAGCCACCAGCTATTACTGTTTTTGCAGAGGGTTCCGGTCAGGTGTGTAGATGGCCGCTaGACTCATCACGCACAGACC | + |
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Preference number: 4 (lower is better) Translates to: QVFRSHQLLLFLQRVPVRCVDGR*THHAQT Trigger: GGTCTGTGCGTGATGAGTGCAGCGGCCATCTACACA...CCTGACCGGAACCCTCTGCAAAAACAGTAATAGCTGGTGGCTCCTGAACACTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CAA 72 bp | AGTTGGTGGCCAATACAAGTCATCGCCAGACAGTCCTaGGAGGCACAGAACACTCTAGACCCAGAAAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: SWWPIQVIARQS*EAQNTLDPESQ Trigger: CTGGCTTTCTGGGTCTAGAGTGTTCTGTGCCTCCAAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR CCA 90 bp | AAGGACACCGTATATACATCTACAGTTGGTGGCCAATACAAGTCATCGCCAGACGCCTCACTGTGTAGATaGCCGCTGCACTCATCACGC | + |
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Preference number: 4 (lower is better) Translates to: KDTVYTSTVGGQYKSSPDASLCR*PLHSSR Trigger: GCGTGATGAGTGCAGCGGCCATCTACACAGTGAGGC...GTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR TCA 90 bp | GTCTGGAGTCTTAGCATCAGAAGGACACCGTATATACATCTACAGTTGGTGGCCAGGAGTAGTCAGTGTTaGCATGCCACTCACTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: VWSLSIRRTPYIHLQLVARSSQC*HATHCA Trigger: GGCACAGTGAGTGGCATGTCAACACTGACTACTCCT...GGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGCTAAGACTCCAGAC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR CCA 90 bp | AAGTGTTCAGGAGCCACCAGCTATTACTGTTTTTGCAGAGGGTTCCGGTCAGGGGTGAGAGTGAAGAGCTaGCAGAAGAACAGGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: KCSGATSYYCFCRGFRSGVRVKS*QKNRNR Trigger: TCTGTTCCTGTTCTTCTGCCAGCTCTTCACTCTCAC...CCCTGACCGGAACCCTCTGCAAAAACAGTAATAGCTGGTGGCTCCTGAACACTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CAA 72 bp | TCAATCAACAGCAATCCCCACTCAACTGCGTTCTGTTaGGTTTGGCTTGCGTTTGGGTTTGGGGCTAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SINSNPHSTAFC*VWLAFGFGASS Trigger: AGAGCTAGCCCCAAACCCAAACGCAAGCCAAACCAAACAGAACGCAGTTGAGTGGGGATTGCTGTTGATTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | AGAGAAAGCAAGCAAAAACAAGAAAGGTCTGGAGTCTTAGCATCAGAAGGACACGTGGCCTGGACAGACTaGAGCCATTCGCTCACTGAT | + |
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Preference number: 4 (lower is better) Translates to: RESKQKQERSGVLASEGHVAWTD*SHSLTD Trigger: ATCAGTGAGCGAATGGCTGCAGTCTGTCCAGGCCAC...GTGTCCTTCTGATGCTAAGACTCCAGACCTTTCTTGTTTTTGCTTGCTTTCTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR GCA 90 bp | AGGTATGAAAGCAGTTATGAACCGTTTGTATCGGGTCTCCATTCTGCTGTATCGGATGTGGTACAGTTCTaGCAGAGATCAGTCGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: RYESSYEPFVSGLHSAVSDVVQF*QRSVVC Trigger: ACACACGACTGATCTCTGGCAGAACTGTACCACATC...CGATACAGCAGAATGGAGACCCGATACAAACGGTTCATAACTGCTTTCATACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR CCA 90 bp | AGGTATGAAAGCAGTTATGAACCGTTTGTATCGGGTCTCCATTCTGCTGTATCGGTGAGAGTGAAGAGCTaGCAGAAGAACAGGAACAGA | + |
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Preference number: 4 (lower is better) Translates to: RYESSYEPFVSGLHSAVSVRVKS*QKNRNR Trigger: TCTGTTCCTGTTCTTCTGCCAGCTCTTCACTCTCAC...CGATACAGCAGAATGGAGACCCGATACAAACGGTTCATAACTGCTTTCATACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| 3UTR CAA 72 bp | CTTAGCATCAGAAGGACACCGTATATACATCTACAGTaGGTGGCCAATACAAGTCATCGCCAGACAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LSIRRTPYIHLQ*VANTSHRQTVL Trigger: AAGGACTGTCTGGCGATGACTTGTATTGGCCACCAACTGTAGATGTATATACGGTGTCCTTCTGATGCTAAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS CCA 90 bp | TCACTGATGAGGAGTAGCAGTGTTGGACGGCTCCCAAGGCGGATGTaGTACAGTTCTGCCAGAGATCAGTCGTGTGTCCATTGCCCACGA | + |
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Preference number: 5 (lower is better) Translates to: SLMRSSSVGRLPRRM*YSSARDQSCVHCPR Trigger: TCGTGGGCAATGGACACACGACTGATCTCTGGCAGAACTGTACCACATCCGCCTTGGGAGCCGTCCAACACTGCTACTCCTCATCAGTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108701.8 ENSMUST00000108702.8 |
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| CDS-3UTR CAA 90 bp | TCTCTGGTTTCCTTCCTCCCTCCCTGTGGACCCTATGCGCGCTCAGAGCCTAGACAGACCAGCAAGGATTaGGAAGAATCCAGTGATGTA | + |
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Preference number: 5 (lower is better) Translates to: SLVSFLPPCGPYARSEPRQTSKD*EESSDV Trigger: TACATCACTGGATTCTTCCAAATCCTTGCTGGTCTG...TCTAGGCTCTGAGCGCGCATAGGGTCCACAGGGAGGGAGGAAGGAAACCAGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108702.8 |
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| CDS GCA 90 bp | AGTGTTGACATGCCACTCACTGTGCCTCACTGTGTAGATGGCCGCTaGACTCATCACGCACAGACCAGCAAGGATTTGGAAGAATCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SVDMPLTVPHCVDGR*THHAQTSKDLEESS Trigger: ACTGGATTCTTCCAAATCCTTGCTGGTCTGTGCGTGATGAGTGCAGCGGCCATCTACACAGTGAGGCACAGTGAGTGGCATGTCAACACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108701.8 ENSMUST00000108702.8 |
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| CDS-3UTR CAA 90 bp | TATGAGGTTGAGTGGGAGGGAGGTATCTGCTTTCAGATGAAAGGGGGCCACGTGCAGACCAGCAAGGATTaGGAAGAATCCAGTGATGTA | + |
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Preference number: 5 (lower is better) Translates to: YEVEWEGGICFQMKGGHVQTSKD*EESSDV Trigger: TACATCACTGGATTCTTCCAAATCCTTGCTGGTCTG...CACGTGGCCCCCTTTCATCTGAAAGCAGATACCTCCCTCCCACTCAACCTCATA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS-3UTR CAA 90 bp | CATCTTCAATCAACAGCAATCCCCACTCAACTGCGTTCTGTTTGGTTTGGCTTGCAGACCAGCAAGGATTaGGAAGAATCCAGTGATGTA | + |
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Preference number: 5 (lower is better) Translates to: HLQSTAIPTQLRSVWFGLQTSKD*EESSDV Trigger: TACATCACTGGATTCTTCCAAATCCTTGCTGGTCTG...CAAGCCAAACCAAACAGAACGCAGTTGAGTGGGGATTGCTGTTGATTGAAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000018361.10 ENSMUST00000108702.8 |
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| CDS CAA 72 bp | GTGGTACAGTTCTGCCAGAGATCAGTCGTGTGTCCATaGCCCACGAGCCATTGGCTGACGATGGTGGAGACG | + |
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Preference number: 6 (lower is better) Translates to: VVQFCQRSVVCP*PTSHWLTMVET Trigger: CGTCTCCACCATCGTCAGCCAATGGCTCGTGGGCAATGGACACACGACTGATCTCTGGCAGAACTGTACCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108701.8 ENSMUST00000108702.8 |
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| CDS CAA 90 bp | AAGGCGGATGTGGTACAGTTCTGCCAGAGATCAGTCGTGTGTCCATaGCCCACGAGCCATTGGCTGACGATGGTGGAGACGAAGAGCAAC | + |
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Preference number: 6 (lower is better) Translates to: KADVVQFCQRSVVCP*PTSHWLTMVETKSN Trigger: GTTGCTCTTCGTCTCCACCATCGTCAGCCAATGGCTCGTGGGCAATGGACACACGACTGATCTCTGGCAGAACTGTACCACATCCGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108701.8 ENSMUST00000108702.8 |
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| CDS CCA 72 bp | AGGAGTAGCAGTGTTGGACGGCTCCCAAGGCGGATGTaGTACAGTTCTGCCAGAGATCAGTCGTGTGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: RSSSVGRLPRRM*YSSARDQSCVH Trigger: ATGGACACACGACTGATCTCTGGCAGAACTGTACCACATCCGCCTTGGGAGCCGTCCAACACTGCTACTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108701.8 ENSMUST00000108702.8 |
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| CDS GCA 72 bp | ATGCCACTCACTGTGCCTCACTGTGTAGATGGCCGCTaGACTCATCACGCACAGACCAGCAAGGATTTGGAA | + |
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Preference number: 6 (lower is better) Translates to: MPLTVPHCVDGR*THHAQTSKDLE Trigger: TTCCAAATCCTTGCTGGTCTGTGCGTGATGAGTGCAGCGGCCATCTACACAGTGAGGCACAGTGAGTGGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000018361.10 ENSMUST00000108700.2 ENSMUST00000108701.8 ENSMUST00000108702.8 |
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