Pregenerated sensors for PMP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052468Ensembl transcript IDs: ENSMUST00000029034.9
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCAACATGCTTAGTGGCTGTAACAGCTGTGCATCATACTGTTTGTaGATTACAAAACTTTGGCCAAGTGGAATAGAGGCTGCTCCTGTT | + |
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Preference number: 1 (lower is better) Translates to: VNMLSGCNSCASYCL*ITKLWPSGIEAAPV Trigger: AACAGGAGCAGCCTCTATTCCACTTGGCCAAAGTTTTGTAATGCACAAACAGTATGATGCACAGCTGTTACAGCCACTAAGCATGTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR TCA 90 bp | GCCCAGAACAAAGCTCTTACCTTCTTATCATTATTTAAATCAGAATaGGCACAGCCTAGGCTGTCACTTTGCACCAAAGATTTTTATGGG | + |
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Preference number: 1 (lower is better) Translates to: AQNKALTFLSLFKSE*AQPRLSLCTKDFYG Trigger: CCCATAAAAATCTTTGGTGCAAAGTGACAGCCTAGGCTGTGCTCATTCTGATTTAAATAATGATAAGAAGGTAAGAGCTTTGTTCTGGGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR CAA 90 bp | CCTGTCAACATGCTTAGTGGCTGTAACAGCTGTGCATCATACTGTTaGTGCATTACAAAACTTTGGCCAAGTGGAATAGAGGCTGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: PVNMLSGCNSCASYC*CITKLWPSGIEAAP Trigger: AGGAGCAGCCTCTATTCCACTTGGCCAAAGTTTTGTAATGCACAAACAGTATGATGCACAGCTGTTACAGCCACTAAGCATGTTGACAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR TCA 90 bp | TCAGCGATAAAAAGAAACAAATTACTACTGCATGCGATAACCTGGATAAACCTGACCTGGGGAGTGAGATaGGGAAGCCTGCTAAGATGG | + |
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Preference number: 2 (lower is better) Translates to: SAIKRNKLLLHAITWINLTWGVR*GSLLRW Trigger: CCATCTTAGCAGGCTTCCTCATCTCACTCCCCAGGT...CAGGTTTATCCAGGTTATCGCATGCAGTAGTAATTTGTTTCTTTTTATCGCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR TCA 90 bp | TCAGCGATAAAAAGAAACAAATTACTACTGCATGCGATAACCTGGATAAACCTGTTGCTTCTGGTGGATTaGTATTACCTGGGGAGTGAG | + |
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Preference number: 2 (lower is better) Translates to: SAIKRNKLLLHAITWINLLLLVD*YYLGSE Trigger: CTCACTCCCCAGGTAATATCAATCCACCAGAAGCAA...CAGGTTTATCCAGGTTATCGCATGCAGTAGTAATTTGTTTCTTTTTATCGCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR CCA 90 bp | AAAAGAAATGAATACAGGAGGTCTGGTGCGATTTTAAGCAAAGCTCGTCTAGGACACCAAAGATTTTTATaGGATGTCTGTTGTCTAGTC | + |
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Preference number: 2 (lower is better) Translates to: KRNEYRRSGAILSKARLGHQRFL*DVCCLV Trigger: GACTAGACAACAGACATCCCATAAAAATCTTTGGTG...TCCTAGACGAGCTTTGCTTAAAATCGCACCAGACCTCCTGTATTCATTTCTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR CCA 90 bp | TCAGCGATAAAAAGAAACAAATTACTACTGCATGCGATAACCTGGATAAACCTGTGCATTACAAAACTTTaGCCAAGTGGAATAGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: SAIKRNKLLLHAITWINLCITKL*PSGIEA Trigger: AGCCTCTATTCCACTTGGCCAAAGTTTTGTAATGCA...CAGGTTTATCCAGGTTATCGCATGCAGTAGTAATTTGTTTCTTTTTATCGCTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR CCA 90 bp | GAACGTAGCAGCTTTATTCATCATATACAAACACTGGTTATAACCCAATTGTCTAACCATCCTTGCTTCTaGTGGATTGATATTACCTGG | + |
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Preference number: 2 (lower is better) Translates to: ERSSFIHHIQTLVITQLSNHPCF*WIDITW Trigger: CCAGGTAATATCAATCCACCAGAAGCAAGGATGGTT...AGACAATTGGGTTATAACCAGTGTTTGTATATGATGAATAAAGCTGCTACGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR GCA 90 bp | GAACGTAGCAGCTTTATTCATCATATACAAACACTGGTTATAACCCAATTGTCTAGCGACTCATCCTCTTaGTTTGTTTTCTTTAAGATT | + |
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Preference number: 2 (lower is better) Translates to: ERSSFIHHIQTLVITQLSSDSSS*FVFFKI Trigger: AATCTTAAAGAAAACAAAGCAAGAGGATGAGTCGCT...AGACAATTGGGTTATAACCAGTGTTTGTATATGATGAATAAAGCTGCTACGTTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR CCA 72 bp | AGCCTGCTAAGATGGAGGAACCATGTTTGCCTCAGGTaGGATGGGCAGGCACATAGGAACACGCACCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: SLLRWRNHVCLR*DGQAHRNTHLS Trigger: TGACAGGTGCGTGTTCCTATGTGCCTGCCCATCCCACCTGAGGCAAACATGGTTCCTCCATCTTAGCAGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR CCA 72 bp | ATCATACTGTTTGTGCATTACAAAACTTTGGCCAAGTaGAATAGAGGCTGCTCCTGTTGGCTGAAACAAGGA | + |
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Preference number: 3 (lower is better) Translates to: IILFVHYKTLAK*NRGCSCWLKQG Trigger: TCCTTGTTTCAGCCAACAGGAGCAGCCTCTATTCCACTTGGCCAAAGTTTTGTAATGCACAAACAGTATGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR-3UTR CAA 90 bp | AAAAGAAATGAATACAGGAGGTCTGGTGCGATTTTAAGCAAAGCTCGTCTAGGAGTGCATTACAAAACTTaGGCCAAGTGGAATAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: KRNEYRRSGAILSKARLGVHYKT*AKWNRG Trigger: GCCTCTATTCCACTTGGCCAAAGTTTTGTAATGCAC...TCCTAGACGAGCTTTGCTTAAAATCGCACCAGACCTCCTGTATTCATTTCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR TCA 72 bp | AAAGCTCTTACCTTCTTATCATTATTTAAATCAGAATaGGCACAGCCTAGGCTGTCACTTTGCACCAAAGAT | + |
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Preference number: 3 (lower is better) Translates to: KALTFLSLFKSE*AQPRLSLCTKD Trigger: ATCTTTGGTGCAAAGTGACAGCCTAGGCTGTGCTCATTCTGATTTAAATAATGATAAGAAGGTAAGAGCTTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR GCA 90 bp | CCCCTGCCTCCGAACTGTCCAGGCCCCCAGGCACTTCTGTCTGCCCAGAACAAATTCCCATCCCACTTCTaGACTTGCTTCAGGGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: PLPPNCPGPQALLSAQNKFPSHF*TCFREP Trigger: AGGCTCCCTGAAGCAAGTGCAGAAGTGGGATGGGAA...TTTGTTCTGGGCAGACAGAAGTGCCTGGGGGCCTGGACAGTTCGGAGGCAGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CCA 90 bp | CCCCTGCCTCCGAACTGTCCAGGCCCCCAGGCACTTCTGTCTGCCCAGAACAAAGCAGCGTTCTCCTTATaGCTGTCTCTTTCCCATCCC | + |
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Preference number: 4 (lower is better) Translates to: PLPPNCPGPQALLSAQNKAAFSL*LSLSHP Trigger: GGGATGGGAAAGAGACAGCCATAAGGAGAACGCTGC...TTTGTTCTGGGCAGACAGAAGTGCCTGGGGGCCTGGACAGTTCGGAGGCAGGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| 3UTR CAA 72 bp | CAGCTGTGCATCATACTGTTTGTGCATTACAAAACTTaGGCCAAGTGGAATAGAGGCTGCTCCTGTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QLCIILFVHYKT*AKWNRGCSCWL Trigger: CAGCCAACAGGAGCAGCCTCTATTCCACTTGGCCAAAGTTTTGTAATGCACAAACAGTATGATGCACAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR TCA 90 bp | TATCATTATTTAAATCAGAATGAGCACAGCCTAGGCTGTCACTTTGCACCAAAGACTCCTGGCCCAACTTaGAGGAGATCTCTGTATTTT | + |
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Preference number: 4 (lower is better) Translates to: YHYLNQNEHSLGCHFAPKTPGPT*RRSLYF Trigger: AAAATACAGAGATCTCCTTCAAGTTGGGCCAGGAGT...CTTTGGTGCAAAGTGACAGCCTAGGCTGTGCTCATTCTGATTTAAATAATGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CCA 90 bp | TCAGCGATAAAAAGAAACAAATTACTACTGCATGCGATAACCTGGATAAACCTGGTGTCACGATGCTCTTaGCTTTTCTGTTGTCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: SAIKRNKLLLHAITWINLVSRCS*LFCCQL Trigger: CAGCTGACAACAGAAAAGCCAAGAGCATCGTGACAC...CAGGTTTATCCAGGTTATCGCATGCAGTAGTAATTTGTTTCTTTTTATCGCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CCA 90 bp | AAAAGAAATGAATACAGGAGGTCTGGTGCGATTTTAAGCAAAGCTCGTCTAGGACTTTCTCATAAATTCTaGTGCAGACCACACCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: KRNEYRRSGAILSKARLGLSHKF*CRPHPS Trigger: TGAAGGGTGTGGTCTGCACCAGAATTTATGAGAAAG...TCCTAGACGAGCTTTGCTTAAAATCGCACCAGACCTCCTGTATTCATTTCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CCA 90 bp | GAACGTAGCAGCTTTATTCATCATATACAAACACTGGTTATAACCCAATTGTCTTTCCCAGTTTTCTGTTaGCTAACCCCACACCTAGAG | + |
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Preference number: 4 (lower is better) Translates to: ERSSFIHHIQTLVITQLSFPVFC*LTPHLE Trigger: CTCTAGGTGTGGGGTTAGCCAACAGAAAACTGGGAA...AGACAATTGGGTTATAACCAGTGTTTGTATATGATGAATAAAGCTGCTACGTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR GCA 90 bp | GAACGTAGCAGCTTTATTCATCATATACAAACACTGGTTATAACCCAATTGTCTAGACAAGCTTCCAGGTaGCTAGGAATTTGTTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: ERSSFIHHIQTLVITQLSRQASR*LGICCS Trigger: TGAGCAACAAATTCCTAGGCACCTGGAAGCTTGTCT...AGACAATTGGGTTATAACCAGTGTTTGTATATGATGAATAAAGCTGCTACGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS GCA 90 bp | TCCAGCAGCGTTCTCCTTATGGCTGTCTCTTTCCCATCCCACTTCTaGACTTGCTTCAGGGAGCCTCTCTCCAGTGTCACGATGCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSSVLLMAVSFPSHF*TCFREPLSSVTMLL Trigger: CAAGAGCATCGTGACACTGGAGAGAGGCTCCCTGAAGCAAGTGCAGAAGTGGGATGGGAAAGAGACAGCCATAAGGAGAACGCTGCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS GCA 90 bp | AGCGTTCTCCTTATGGCTGTCTCTTTCCCATCCCACTTCTGCACTTaGTTCAGGGAGCCTCTCTCCAGTGTCACGATGCTCTTGGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SVLLMAVSFPSHFCT*FREPLSSVTMLLAF Trigger: AAAAGCCAAGAGCATCGTGACACTGGAGAGAGGCTCCCTGAAGCAAGTGCAGAAGTGGGATGGGAAAGAGACAGCCATAAGGAGAACGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CAA 90 bp | GCGACTCATCCTCTTGCTTTGTTTTCTTTAAGATTCCCCTGCCTCCGAACTGTCTTTCCCAGTTTTCTGTaGGCTAACCCCACACCTAGA | + |
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Preference number: 5 (lower is better) Translates to: ATHPLALFSLRFPCLRTVFPSFL*ANPTPR Trigger: TCTAGGTGTGGGGTTAGCCAACAGAAAACTGGGAAA...GACAGTTCGGAGGCAGGGGAATCTTAAAGAAAACAAAGCAAGAGGATGAGTCGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CAA 90 bp | TCAGCGATAAAAAGAAACAAATTACTACTGCATGCGATAACCTGGATAAACCTGATCCCACTTCTGCACTaGCTTCAGGGAGCCTCTCTC | + |
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Preference number: 5 (lower is better) Translates to: SAIKRNKLLLHAITWINLIPLLH*LQGASL Trigger: GAGAGAGGCTCCCTGAAGCAAGTGCAGAAGTGGGAT...CAGGTTTATCCAGGTTATCGCATGCAGTAGTAATTTGTTTCTTTTTATCGCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS-3UTR CAA 90 bp | GAACGTAGCAGCTTTATTCATCATATACAAACACTGGTTATAACCCAATTGTCTAACTCCTGGCCCAACTaGAAGGAGATCTCTGTATTT | + |
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Preference number: 5 (lower is better) Translates to: ERSSFIHHIQTLVITQLSNSWPN*KEISVF Trigger: AAATACAGAGATCTCCTTCAAGTTGGGCCAGGAGTT...AGACAATTGGGTTATAACCAGTGTTTGTATATGATGAATAAAGCTGCTACGTTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS GCA 72 bp | CTTATGGCTGTCTCTTTCCCATCCCACTTCTGCACTTaGTTCAGGGAGCCTCTCTCCAGTGTCACGATGCTC | + |
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Preference number: 6 (lower is better) Translates to: LMAVSFPSHFCT*FREPLSSVTML Trigger: GAGCATCGTGACACTGGAGAGAGGCTCCCTGAAGCAAGTGCAGAAGTGGGATGGGAAAGAGACAGCCATAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS CAA 72 bp | CCTTATGGCTGTCTCTTTCCCATCCCACTTCTGCACTaGCTTCAGGGAGCCTCTCTCCAGTGTCACGATGCT | + |
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Preference number: 6 (lower is better) Translates to: PYGCLFPIPLLH*LQGASLQCHDA Trigger: AGCATCGTGACACTGGAGAGAGGCTCCCTGAAGCAAGTGCAGAAGTGGGATGGGAAAGAGACAGCCATAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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| CDS CAA 90 bp | CAGCGTTCTCCTTATGGCTGTCTCTTTCCCATCCCACTTCTGCACTaGCTTCAGGGAGCCTCTCTCCAGTGTCACGATGCTCTTGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: QRSPYGCLFPIPLLH*LQGASLQCHDALGF Trigger: AAAGCCAAGAGCATCGTGACACTGGAGAGAGGCTCCCTGAAGCAAGTGCAGAAGTGGGATGGGAAAGAGACAGCCATAAGGAGAACGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029034.9 |
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