Pregenerated sensors for PMM2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022711Ensembl transcript IDs: ENSMUST00000023396.10, ENSMUST00000230828.2
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGCAGCCAAGGGTAGGGCAGTGGAGACATATGGTGGTTGGGCACTaGGAAGCTGCCTGGGAAGTGTTCTTGGAAGGCTGTCCCCGAGCT | + |
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Preference number: 1 (lower is better) Translates to: GQPRVGQWRHMVVGH*EAAWEVFLEGCPRA Trigger: AGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTCTCCACTGCCCTACCCTTGGCTGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | TACCTAGGTTGGTCAGCCTGGGGGTTAAAGAGGACTGCAGTGAGGTaGTGCTTTGCTGGGTCCTCTGTCCTCCCCTCCTGCGGTGACAGG | + |
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Preference number: 1 (lower is better) Translates to: YLGWSAWGLKRTAVR*CFAGSSVLPSCGDR Trigger: CCTGTCACCGCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGCAGTCCTCTTTAACCCCCAGGCTGACCAACCTAGGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | CTGCGTCTGCTACCTAGGTTGGTCAGCCTGGGGGTTAAAGAGGACTaGAGTGAGGTGCTGCTTTGCTGGGTCCTCTGTCCTCCCCTCCTG | + |
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Preference number: 1 (lower is better) Translates to: LRLLPRLVSLGVKED*SEVLLCWVLCPPLL Trigger: CAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGCAGTCCTCTTTAACCCCCAGGCTGACCAACCTAGGTAGCAGACGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | GAGGCTGGAGAGCACCCCTGCTGCTGTGGCCTTAGGTACTGCGTCTaGTACCTAGGTTGGTCAGCCTGGGGGTTAAAGAGGACTGCAGTG | + |
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Preference number: 1 (lower is better) Translates to: EAGEHPCCCGLRYCV*YLGWSAWGLKRTAV Trigger: CACTGCAGTCCTCTTTAACCCCCAGGCTGACCAACCTAGGTAGCAGACGCAGTACCTAAGGCCACAGCAGCAGGGGTGCTCTCCAGCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | GAAGTGTTCTTGGAAGGCTGTCCCCGAGCTTCTGGAGGACACACGTaGACTCTCCAAGAAGAGGCTGGAGAGCACCCCTGCTGCTGTGGC | + |
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Preference number: 1 (lower is better) Translates to: EVFLEGCPRASGGHT*TLQEEAGEHPCCCG Trigger: GCCACAGCAGCAGGGGTGCTCTCCAGCCTCTTCTTGGAGAGTGCACGTGTGTCCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CCA 90 bp | GGAAGCTGCCTGGGAAGTGTTCTTGGAAGGCTGTCCCCGAGCTTCTaGAGGACACACGTGCACTCTCCAAGAAGAGGCTGGAGAGCACCC | + |
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Preference number: 1 (lower is better) Translates to: GSCLGSVLGRLSPSF*RTHVHSPRRGWRAP Trigger: GGGTGCTCTCCAGCCTCTTCTTGGAGAGTGCACGTGTGTCCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | CTAGGTTGGTCAGCCTGGGGGTTAAAGAGGACTGCAGTGAGGTGCTaGTTTGCTGGGTCCTCTGTCCTCCCCTCCTGCGGTGACAGGAAA | + |
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Preference number: 1 (lower is better) Translates to: LGWSAWGLKRTAVRC*FAGSSVLPSCGDRK Trigger: TTTCCTGTCACCGCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGCAGTCCTCTTTAACCCCCAGGCTGACCAACCTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | AAGGGTAGGGCAGTGGAGACATATGGTGGTTGGGCACTGGGAAGCTaGCTGGGAAGTGTTCTTGGAAGGCTGTCCCCGAGCTTCTGGAGG | + |
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Preference number: 1 (lower is better) Translates to: KGRAVETYGGWALGS*LGSVLGRLSPSFWR Trigger: CCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTCTCCACTGCCCTACCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CCA 90 bp | GACATATGGTGGTTGGGCACTGGGAAGCTGCCTGGGAAGTGTTCTTaGAAGGCTGTCCCCGAGCTTCTGGAGGACACACGTGCACTCTCC | + |
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Preference number: 1 (lower is better) Translates to: DIWWLGTGKLPGKCS*KAVPELLEDTRALS Trigger: GGAGAGTGCACGTGTGTCCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CCA 90 bp | AGAGTAGGGGCAGCCAAGGGTAGGGCAGTGGAGACATATGGTGGTTaGGCACTGGGAAGCTGCCTGGGAAGTGTTCTTGGAAGGCTGTCC | + |
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Preference number: 1 (lower is better) Translates to: RVGAAKGRAVETYGG*ALGSCLGSVLGRLS Trigger: GGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTCTCCACTGCCCTACCCTTGGCTGCCCCTACTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CCA 90 bp | GCTACAGCCAGGACAGCTAGGGGCTCCAGCATTACTGGAGCCAAGTaGGGAAAGCAGCTCTCAGAAGCCAAGTTCTCTGCCAACCTGGGG | + |
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Preference number: 1 (lower is better) Translates to: ATARTARGSSITGAK*GKQLSEAKFSANLG Trigger: CCCCAGGTTGGCAGAGAACTTGGCTTCTGAGAGCTGCTTTCCCCACTTGGCTCCAGTAATGCTGGAGCCCCTAGCTGTCCTGGCTGTAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | CAAGAAGAGGCTGGAGAGCACCCCTGCTGCTGTGGCCTTAGGTACTaGGTCTGCTACCTAGGTTGGTCAGCCTGGGGGTTAAAGAGGACT | + |
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Preference number: 1 (lower is better) Translates to: QEEAGEHPCCCGLRY*VCYLGWSAWGLKRT Trigger: AGTCCTCTTTAACCCCCAGGCTGACCAACCTAGGTAGCAGACGCAGTACCTAAGGCCACAGCAGCAGGGGTGCTCTCCAGCCTCTTCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR GCA 90 bp | CCAGGGAATGTTGGCCAGCCCTCGTGCTCAGGATCATCAGGATACTaGCCTTATTGTGAGACAGGATCCACTCCCACCCCCACCCCTTTC | + |
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Preference number: 1 (lower is better) Translates to: PGNVGQPSCSGSSGY*PYCETGSTPTPTPF Trigger: GAAAGGGGTGGGGGTGGGAGTGGATCCTGTCTCACAATAAGGGCAGTATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR GCA 90 bp | ACAGCAGTCTTCAGTCTTCTCTGTGGGCCAGGGAGACCTTCAGATTaGAGCCCTCCTGTCTCTGCTTCCCATGTAGCTGGGGTTACAGCC | + |
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Preference number: 1 (lower is better) Translates to: TAVFSLLCGPGRPSD*SPPVSASHVAGVTA Trigger: GGCTGTAACCCCAGCTACATGGGAAGCAGAGACAGGAGGGCTGCAATCTGAAGGTCTCCCTGGCCCACAGAGAAGACTGAAGACTGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR GCA 90 bp | CCCTTTGTGCTCTCTGAGACAGGGTCTCAACCAAGTGGCCACACTTaGCCACAGCAGTCTTCAGTCTTCTCTGTGGGCCAGGGAGACCTT | + |
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Preference number: 1 (lower is better) Translates to: PFVLSETGSQPSGHT*PQQSSVFSVGQGDL Trigger: AAGGTCTCCCTGGCCCACAGAGAAGACTGAAGACTGCTGTGGGCAAGTGTGGCCACTTGGTTGAGACCCTGTCTCAGAGAGCACAAAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR TCA 90 bp | AACAAGGAAGATGGAGTCTGTCCTGGTGTCCCACTGTGGGGTCTGTaGGGCTGGTCTTCTCTGTGCAGTGACTGCTGTCTCTCTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: NKEDGVCPGVPLWGL*GWSSLCSDCCLSVC Trigger: ACACACAGAGAGACAGCAGTCACTGCACAGAGAAGACCAGCCTCACAGACCCCACAGTGGGACACCAGGACAGACTCCATCTTCCTTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR GCA 90 bp | TTTCATCACAACAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTaGTCAGGATCATCAGGATACTGCCCTTATTGTGAGACAGGATCC | + |
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Preference number: 1 (lower is better) Translates to: FHHNKAGPGNVGQPS*SGSSGYCPYCETGS Trigger: GGATCCTGTCTCACAATAAGGGCAGTATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTTGTGATGAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR CCA 90 bp | GTTGCAGACGGAGCATGTCACAGAAGTCTTCAGTTCTATCCCAGGTaGGTAACTCTGGGTGGCTGCTCTCTTTCATCATCAGATGCCCCT | + |
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Preference number: 1 (lower is better) Translates to: VADGACHRSLQFYPR*VTLGGCSLSSSDAP Trigger: AGGGGCATCTGATGATGAAAGAGAGCAGCCACCCAGAGTTACCCACCTGGGATAGAACTGAAGACTTCTGTGACATGCTCCGTCTGCAAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CCA 90 bp | GGGTGGAAAAGAGGCCAAAGACATGGTTTGTTTCGGAGAGGGAGCTaGGACCAAGGACAGTGTATAAAGGCAGCCAAGGAAAGCTGGTCT | + |
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Preference number: 1 (lower is better) Translates to: GWKRGQRHGLFRRGS*DQGQCIKAAKESWS Trigger: AGACCAGCTTTCCTTGGCTGCCTTTATACACTGTCCTTGGTCCCAGCTCCCTCTCCGAAACAAACCATGTCTTTGGCCTCTTTTCCACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR TCA 90 bp | GCTCACAGAGGGGAAGCTGGCTTGAAAACAGAAACATTAACCCTTTaGCAGAATAGTGGTGTTCCTTCCTGCCTCAGCCTCCACCACAGG | + |
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Preference number: 1 (lower is better) Translates to: AHRGEAGLKTETLTL*QNSGVPSCLSLHHR Trigger: CCTGTGGTGGAGGCTGAGGCAGGAAGGAACACCACTATTCTGTCAAAGGGTTAATGTTTCTGTTTTCAAGCCAGCTTCCCCTCTGTGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | CGAGCTTCTGGAGGACACACGTGCACTCTCCAAGAAGAGGCTGGAGAGCACCCCGAGGTGCTGCTTTGCTaGGTCCTCTGTCCTCCCCTC | + |
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Preference number: 2 (lower is better) Translates to: RASGGHTCTLQEEAGEHPEVLLC*VLCPPL Trigger: GAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTC...GGGGTGCTCTCCAGCCTCTTCTTGGAGAGTGCACGTGTGTCCTCCAGAAGCTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | GTGGTTGGGCACTGGGAAGCTGCCTGGGAAGTGTTCTTGGAAGGCTGTCCCCGACCACACTGTCGTCTGTaGCTCACAGAGGGGAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: VVGHWEAAWEVFLEGCPRPHCRL*LTEGKL Trigger: CAGCTTCCCCTCTGTGAGCCACAGACGACAGTGTGG...TCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR TCA 90 bp | CAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTGCTCAGGATCATCAGGATACCACTGTGGGGTCTGTaGGGCTGGTCTTCTCTGTGC | + |
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Preference number: 2 (lower is better) Translates to: QGRSRECWPALVLRIIRIPLWGL*GWSSLC Trigger: GCACAGAGAAGACCAGCCTCACAGACCCCACAGTGG...TATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTCCCCGAGCTTCTGGAGGACACACGTGCACTCTCCAAGAAGAGGCTGGAGATCTGTCCTCCCCTCCTaGGGTGACAGGAAAGCAGTC | + |
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Preference number: 2 (lower is better) Translates to: LSPSFWRTHVHSPRRGWRSVLPS*GDRKAV Trigger: GACTGCTTTCCTGTCACCGCAGGAGGGGAGGACAGA...TCTCCAGCCTCTTCTTGGAGAGTGCACGTGTGTCCTCCAGAAGCTCGGGGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CAA 90 bp | AGACATATGGTGGTTGGGCACTGGGAAGCTGCCTGGGAAGTGTTCTaGGAAGGCTGTCCCCGAGCTTCTGGAGGACACACGTGCACTCTC | + |
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Preference number: 2 (lower is better) Translates to: RHMVVGHWEAAWEVF*EGCPRASGGHTCTL Trigger: GAGAGTGCACGTGTGTCCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR GCA 90 bp | AGGACAGCTAGGGGCTCCAGCATTACTGGAGCCAAGTGGGGAAAGCAGCTCTCAAGTGGTGTTCCTTCCTaGCTCAGCCTCCACCACAGG | + |
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Preference number: 2 (lower is better) Translates to: RTARGSSITGAKWGKQLSSGVPS*LSLHHR Trigger: CCTGTGGTGGAGGCTGAGGCAGGAAGGAACACCACT...TGAGAGCTGCTTTCCCCACTTGGCTCCAGTAATGCTGGAGCCCCTAGCTGTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | ATCTGGGCTGGCTTGGAACTGCTACAGCCAGGACAGCTAGGGGCTCCAGCATTAATGGTGGTTGGGCACTaGGAAGCTGCCTGGGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: IWAGLELLQPGQLGAPALMVVGH*EAAWEV Trigger: CACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCAT...TAATGCTGGAGCCCCTAGCTGTCCTGGCTGTAGCAGTTCCAAGCCAGCCCAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR GCA 90 bp | GCAGTGAGGTGCTGCTTTGCTGGGTCCTCTGTCCTCCCCTCCTGCGGTGACAGGGTAACTCTGGGTGGCTaGTCTCTTTCATCATCAGAT | + |
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Preference number: 2 (lower is better) Translates to: AVRCCFAGSSVLPSCGDRVTLGG*SLSSSD Trigger: ATCTGATGATGAAAGAGAGCAGCCACCCAGAGTTAC...CCTGTCACCGCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | TTCTGGAGGACACACGTGCACTCTCCAAGAAGAGGCTGGAGAGCACCCCTGCTGCTAGGTTGGTCAGCCTaGGGGTTAAAGAGGACTGCA | + |
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Preference number: 2 (lower is better) Translates to: FWRTHVHSPRRGWRAPLLLGWSA*GLKRTA Trigger: TGCAGTCCTCTTTAACCCCCAGGCTGACCAACCTAG...CAGCAGGGGTGCTCTCCAGCCTCTTCTTGGAGAGTGCACGTGTGTCCTCCAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | GCAGGTAGAACACAGCATCTGGGCTGGCTTGGAACTGCTACAGCCAGGACAGCTGGCAGTGGAGACATATaGTGGTTGGGCACTGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: AGRTQHLGWLGTATARTAGSGDI*WLGTGK Trigger: CTTCCCAGTGCCCAACCACCATATGTCTCCACTGCC...AGCTGTCCTGGCTGTAGCAGTTCCAAGCCAGCCCAGATGCTGTGTTCTACCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | GGACAGCTAGGGGCTCCAGCATTACTGGAGCCAAGTGGGGAAAGCAGCTCTCAGCTGAGAAGTGAGGTATaGTGCTGTCCCTTCAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: GQLGAPALLEPSGESSSQLRSEV*CCPFSG Trigger: CCCACTGAAGGGACAGCACCATACCTCACTTCTCAG...CTGAGAGCTGCTTTCCCCACTTGGCTCCAGTAATGCTGGAGCCCCTAGCTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | TCACAACAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTGCTCAGGATCATCGCAGCCAAGGAAAGCTaGTCTCTGAGTGGGAGTCTC | + |
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Preference number: 2 (lower is better) Translates to: SQQGRSRECWPALVLRIIAAKES*SLSGSL Trigger: GAGACTCCCACTCAGAGACCAGCTTTCCTTGGCTGC...GATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTTGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTGCTCAGGATCATCAGGATATGCTTCCCATGTAGCTaGGGTTACAGCCTGTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: QGRSRECWPALVLRIIRICFPCS*GYSLCH Trigger: GTGGCACAGGCTGTAACCCCAGCTACATGGGAAGCA...TATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR GCA 90 bp | TCAGTTGTCACTTGGTCAGCTATCTGTCAGGCAGCAGGCCACACTGTCGTCTGTGCCTCCACCACAGGTTaGAGACGGAGCATGTCACAG | + |
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Preference number: 2 (lower is better) Translates to: SVVTWSAICQAAGHTVVCASTTG*RRSMSQ Trigger: CTGTGACATGCTCCGTCTGCAACCTGTGGTGGAGGC...ACAGACGACAGTGTGGCCTGCTGCCTGACAGATAGCTGACCAAGTGACAACTGA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR GCA 90 bp | GTGCTCTCTGAGACAGGGTCTCAACCAAGTGGCCACACTTGCCCACAGCAGTCTGGCTGGTCTTCTCTGTaGAGTGACTGCTGTCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: VLSETGSQPSGHTCPQQSGWSSL*SDCCLS Trigger: AGAGAGACAGCAGTCACTGCACAGAGAAGACCAGCC...AGACTGCTGTGGGCAAGTGTGGCCACTTGGTTGAGACCCTGTCTCAGAGAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGTGAGGTGCTGCTTTGCTGGGTCCTCTGTCCTCCCCTCCTGCGGTGACAGGTGCAAGTGTAAACTGTaGGATCAGTTGTCACTTGGT | + |
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Preference number: 2 (lower is better) Translates to: AVRCCFAGSSVLPSCGDRCKCKL*DQLSLG Trigger: ACCAAGTGACAACTGATCCCACAGTTTACACTTGCA...CCTGTCACCGCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | TTCATCACAACAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTGCTCAGGATAGGGTCTCAACCAAGTaGCCACACTTGCCCACAGCA | + |
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Preference number: 2 (lower is better) Translates to: FITTRQVQGMLASPRAQDRVSTK*PHLPTA Trigger: TGCTGTGGGCAAGTGTGGCCACTTGGTTGAGACCCT...ATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTTGTGATGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR GCA 90 bp | GCTCTCAGAAGCCAAGTTCTCTGCCAACCTGGGGTAGACACCCTTTTGACACTGGGCCAGCCAGGCCAGTaGAAGTGTAAACTGTGGGAT | + |
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Preference number: 2 (lower is better) Translates to: ALRSQVLCQPGVDTLLTLGQPGQ*KCKLWD Trigger: ATCCCACAGTTTACACTTGCACTGGCCTGGCTGGCC...CAGTGTCAAAAGGGTGTCTACCCCAGGTTGGCAGAGAACTTGGCTTCTGAGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | ATCTGGGCTGGCTTGGAACTGCTACAGCCAGGACAGCTAGGGGCTCCAGCATTAGGATCAGTTGTCACTTaGTCAGCTATCTGTCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: IWAGLELLQPGQLGAPALGSVVT*SAICQA Trigger: TGCCTGACAGATAGCTGACCAAGTGACAACTGATCC...TAATGCTGGAGCCCCTAGCTGTCCTGGCTGTAGCAGTTCCAAGCCAGCCCAGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | GGAGTCCACCTGGCACAGTGGGAGACACTGGACCTGCAGGTAGAACACAGCATCTCACAGAGGGGAAGCTaGCTTGAAAACAGAAACATT | + |
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Preference number: 2 (lower is better) Translates to: GVHLAQWETLDLQVEHSISQRGS*LENRNI Trigger: AATGTTTCTGTTTTCAAGCCAGCTTCCCCTCTGTGA...GATGCTGTGTTCTACCTGCAGGTCCAGTGTCTCCCACTGTGCCAGGTGGACTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR GCA 90 bp | TGGAAAAGAGGCCAAAGACATGGTTTGTTTCGGAGAGGGAGCTGGGACCAAGGACACCTCACGCATACCTaGTGCCTTTCAGTGTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: WKRGQRHGLFRRGSWDQGHLTHT*CLSVLL Trigger: CAACAACACTGAAAGGCAGCAGGTATGCGTGAGGTG...TCCTTGGTCCCAGCTCCCTCTCCGAAACAAACCATGTCTTTGGCCTCTTTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR GCA 90 bp | CAAAGACATGGTTTGTTTCGGAGAGGGAGCTGGGACCAAGGACAGTGTATAAAGCTCACGCATACCTGCTaGCTTTCAGTGTTGTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: QRHGLFRRGSWDQGQCIKLTHTC*LSVLLV Trigger: GACCAACAACACTGAAAGGCAGCAGGTATGCGTGAG...CTTTATACACTGTCCTTGGTCCCAGCTCCCTCTCCGAAACAAACCATGTCTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR GCA 90 bp | TCCACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACAACAAGCCAAGTGGCCACACTTaGCCACAGCAGTCTTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: STSERGNVTDLRFFHHNKPSGHT*PQQSSV Trigger: GACTGAAGACTGCTGTGGGCAAGTGTGGCCACTTGG...CTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR CCA 90 bp | GGCTCACAGAGGGGAAGCTGGCTTGAAAACAGAAACATTAACCCTTTGACAGAAGTGGGTAACTCTGGGTaGCTGCTCTCTTTCATCATC | + |
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Preference number: 2 (lower is better) Translates to: GSQRGSWLENRNINPLTEVGNSG*LLSFII Trigger: GATGATGAAAGAGAGCAGCCACCCAGAGTTACCCAC...TTCTGTCAAAGGGTTAATGTTTCTGTTTTCAAGCCAGCTTCCCCTCTGTGAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR-3UTR CCA 90 bp | TGTCCAGACAGTCTCTTTCCAGGAAGGATTCCAGTGATCTGCAAGCATACACAGAAGCTGGTCTCTGAGTaGGAGTCTCATTTCCAACCA | + |
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Preference number: 2 (lower is better) Translates to: CPDSLFPGRIPVICKHTQKLVSE*ESHFQP Trigger: TGGTTGGAAATGAGACTCCCACTCAGAGACCAGCTT...CTGTGTATGCTTGCAGATCACTGGAATCCTTCCTGGAAAGAGACTGTCTGGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR TCA 90 bp | ACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACAACAAGGCAAGGAAAGCTGGTCTCTaGGTGGGAGTCTCATTTCCA | + |
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Preference number: 2 (lower is better) Translates to: TSERGNVTDLRFFHHNKARKAGL*VGVSFP Trigger: TGGAAATGAGACTCCCACTCAGAGACCAGCTTTCCT...TGCCTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCCAGACAGTCTCTTTCCAGGAAGGATTCCAGTGATCTGCAAGCATACACAGTTATTAGGCACTTTCTaGAGGCTCACTGGGTGGAAA | + |
|
Preference number: 2 (lower is better) Translates to: CPDSLFPGRIPVICKHTQLLGTF*RLTGWK Trigger: TTTCCACCCAGTGAGCCTTCAGAAAGTGCCTAATAA...CTGTGTATGCTTGCAGATCACTGGAATCCTTCCTGGAAAGAGACTGTCTGGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR-3UTR GCA 90 bp | AAGGAGGCACTTGTTTCTAGAAGGACTCTTGAGGAACAAGGAAGATGGAGTCTGTCTCTGTGCAGTGACTaGTGTCTCTCTGTGTGTGAT | + |
|
Preference number: 2 (lower is better) Translates to: KEALVSRRTLEEQGRWSLSLCSD*CLSVCD Trigger: ATCACACACAGAGAGACAGCAGTCACTGCACAGAGA...CAGACTCCATCTTCCTTGTTCCTCAAGAGTCCTTCTAGAAACAAGTGCCTCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CAA 90 bp | CTGTGCAGTGACTGCTGTCTCTCTGTGTGTGATGAGGACACCCACTaGGATGTCTTCCTCTATCCTTCTCCTCCTTTAGTTATTCAAATT | + |
|
Preference number: 2 (lower is better) Translates to: LCSDCCLSVCDEDTH*DVFLYPSPPLVIQI Trigger: AATTTGAATAACTAAAGGAGGAGAAGGATAGAGGAAGACATCCAAGTGGGTGTCCTCATCACACACAGAGAGACAGCAGTCACTGCACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR-3UTR GCA 90 bp | TCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACAACAAGGCAGGTTTAGGAGTATTTGCCTaGATGCCTGTAAGCACCTCA | + |
|
Preference number: 2 (lower is better) Translates to: SERGNVTDLRFFHHNKAGLGVFA*MPVSTS Trigger: TGAGGTGCTTACAGGCATGCAGGCAAATACTCCTAA...ACCTGCCTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR GCA 72 bp | TCAGCCTGGGGGTTAAAGAGGACTGCAGTGAGGTGCTaGTTTGCTGGGTCCTCTGTCCTCCCCTCCTGCGGT | + |
|
Preference number: 3 (lower is better) Translates to: SAWGLKRTAVRC*FAGSSVLPSCG Trigger: ACCGCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGCAGTCCTCTTTAACCCCCAGGCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR GCA 72 bp | TGGTCAGCCTGGGGGTTAAAGAGGACTGCAGTGAGGTaGTGCTTTGCTGGGTCCTCTGTCCTCCCCTCCTGC | + |
|
Preference number: 3 (lower is better) Translates to: WSAWGLKRTAVR*CFAGSSVLPSC Trigger: GCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAGCACCTCACTGCAGTCCTCTTTAACCCCCAGGCTGACCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR GCA 72 bp | GAGCACCCCTGCTGCTGTGGCCTTAGGTACTGCGTCTaGTACCTAGGTTGGTCAGCCTGGGGGTTAAAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: EHPCCCGLRYCV*YLGWSAWGLKR Trigger: CCTCTTTAACCCCCAGGCTGACCAACCTAGGTAGCAGACGCAGTACCTAAGGCCACAGCAGCAGGGGTGCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | TGGTTGGGCACTGGGAAGCTGCCTGGGAAGTGTTCTTaGAAGGCTGTCCCCGAGCTTCTGGAGGACACACGT | + |
|
Preference number: 3 (lower is better) Translates to: WLGTGKLPGKCS*KAVPELLEDTR Trigger: ACGTGTGTCCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | GACACTGGACCTGCAGGTAGAACACAGCATCTGGGCTaGCTTGGAACTGCTACAGCCAGGACAGCTAGGGGC | + |
|
Preference number: 3 (lower is better) Translates to: DTGPAGRTQHLG*LGTATARTARG Trigger: GCCCCTAGCTGTCCTGGCTGTAGCAGTTCCAAGCCAGCCCAGATGCTGTGTTCTACCTGCAGGTCCAGTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR GCA 72 bp | ACGTGCACTCTCCAAGAAGAGGCTGGAGAGCACCCCTaGTGCTGTGGCCTTAGGTACTGCGTCTGCTACCTA | + |
|
Preference number: 3 (lower is better) Translates to: TCTLQEEAGEHP*CCGLRYCVCYL Trigger: TAGGTAGCAGACGCAGTACCTAAGGCCACAGCAGCAGGGGTGCTCTCCAGCCTCTTCTTGGAGAGTGCACGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR GCA 72 bp | GTTGGCCAGCCCTCGTGCTCAGGATCATCAGGATACTaGCCTTATTGTGAGACAGGATCCACTCCCACCCCC | + |
|
Preference number: 3 (lower is better) Translates to: VGQPSCSGSSGY*PYCETGSTPTP Trigger: GGGGGTGGGAGTGGATCCTGTCTCACAATAAGGGCAGTATCCTGATGATCCTGAGCACGAGGGCTGGCCAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CCA 72 bp | GCAGCCAAGGGTAGGGCAGTGGAGACATATGGTGGTTaGGCACTGGGAAGCTGCCTGGGAAGTGTTCTTGGA | + |
|
Preference number: 3 (lower is better) Translates to: AAKGRAVETYGG*ALGSCLGSVLG Trigger: TCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTCTCCACTGCCCTACCCTTGGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | GGTTCTGTGATAGCCACTGTAGGAACTGGCAAGGCCTaGAGTCCACCTGGCACAGTGGGAGACACTGGACCT | + |
|
Preference number: 3 (lower is better) Translates to: GSVIATVGTGKA*SPPGTVGDTGP Trigger: AGGTCCAGTGTCTCCCACTGTGCCAGGTGGACTCCAGGCCTTGCCAGTTCCTACAGTGGCTATCACAGAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR TCA 72 bp | CACAGCACTGCCATAAAACCCAAGGATGCCACAGGGTaGGGACCTGGCATTCTGCTGTGGGTGTGGACAGAG | + |
|
Preference number: 3 (lower is better) Translates to: HSTAIKPKDATG*GPGILLWVWTE Trigger: CTCTGTCCACACCCACAGCAGAATGCCAGGTCCTCACCCTGTGGCATCCTTGGGTTTTATGGCAGTGCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR TCA 72 bp | ACCCCTTTCATCCTGCTAGAGCCCCTTTGTGCTCTCTaGGACAGGGTCTCAACCAAGTGGCCACACTTGCCC | + |
|
Preference number: 3 (lower is better) Translates to: TPFILLEPLCAL*DRVSTKWPHLP Trigger: GGGCAAGTGTGGCCACTTGGTTGAGACCCTGTCTCAGAGAGCACAAAGGGGCTCTAGCAGGATGAAAGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR GCA 72 bp | GGTATGGTGCTGTCCCTTCAGTGGGCTTCACAGCACTaGCATAAAACCCAAGGATGCCACAGGGTGAGGACC | + |
|
Preference number: 3 (lower is better) Translates to: GMVLSLQWASQH*HKTQGCHRVRT Trigger: GGTCCTCACCCTGTGGCATCCTTGGGTTTTATGGCAGTGCTGTGAAGCCCACTGAAGGGACAGCACCATACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR GCA 72 bp | TGCCTGCATGCCTGTAAGCACCTCACGCATACCTGCTaGCTTTCAGTGTTGTTGGTCAGTCCGGCACTCCTC | + |
|
Preference number: 3 (lower is better) Translates to: CLHACKHLTHTC*LSVLLVSPALL Trigger: GAGGAGTGCCGGACTGACCAACAACACTGAAAGGCAGCAGGTATGCGTGAGGTGCTTACAGGCATGCAGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR GCA 72 bp | TTCAGTCTTCTCTGTGGGCCAGGGAGACCTTCAGATTaGAGCCCTCCTGTCTCTGCTTCCCATGTAGCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: FSLLCGPGRPSD*SPPVSASHVAG Trigger: CCCAGCTACATGGGAAGCAGAGACAGGAGGGCTGCAATCTGAAGGTCTCCCTGGCCCACAGAGAAGACTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CCA 72 bp | AGGGTAGGGCAGTGGAGACATATGGTGGTTGGGCACTaGGAAGCTGCCTGGGAAGTGTTCTTGGAAGGCTGT | + |
|
Preference number: 3 (lower is better) Translates to: RVGQWRHMVVGH*EAAWEVFLEGC Trigger: ACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCACCATATGTCTCCACTGCCCTACCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | AGGACAGCTAGGGGCTCCAGCATTACTGGAGCCAAGTaGGGAAAGCAGCTCTCAGAAGCCAAGTTCTCTGCC | + |
|
Preference number: 3 (lower is better) Translates to: RTARGSSITGAK*GKQLSEAKFSA Trigger: GGCAGAGAACTTGGCTTCTGAGAGCTGCTTTCCCCACTTGGCTCCAGTAATGCTGGAGCCCCTAGCTGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | TGGGAGACACTGGACCTGCAGGTAGAACACAGCATCTaGGCTGGCTTGGAACTGCTACAGCCAGGACAGCTA | + |
|
Preference number: 3 (lower is better) Translates to: WETLDLQVEHSI*AGLELLQPGQL Trigger: TAGCTGTCCTGGCTGTAGCAGTTCCAAGCCAGCCCAGATGCTGTGTTCTACCTGCAGGTCCAGTGTCTCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR TCA 72 bp | CTCGTGCTCAGGATCATCAGGATACTGCCCTTATTGTaGGACAGGATCCACTCCCACCCCCACCCCTTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: LVLRIIRILPLL*DRIHSHPHPFH Trigger: ATGAAAGGGGTGGGGGTGGGAGTGGATCCTGTCTCACAATAAGGGCAGTATCCTGATGATCCTGAGCACGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR GCA 72 bp | GGTAACTCTGGGTGGCTGCTCTCTTTCATCATCAGATaGCCCTTTCAGTGTTGTTGGTCAGTCCGGCACTCC | + |
|
Preference number: 3 (lower is better) Translates to: GNSGWLLSFIIR*PFQCCWSVRHS Trigger: GGAGTGCCGGACTGACCAACAACACTGAAAGGGGCATCTGATGATGAAAGAGAGCAGCCACCCAGAGTTACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR GCA 72 bp | AACAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTaGTCAGGATCATCAGGATACTGCCCTTATTGTGAG | + |
|
Preference number: 3 (lower is better) Translates to: NKAGPGNVGQPS*SGSSGYCPYCE Trigger: CTCACAATAAGGGCAGTATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CCA 72 bp | CTGAGGGTTAAAGTGACCAGACTGAGAAGTGAGGTATaGTGCTGTCCCTTCAGTGGGCTTCACAGCACTGCC | + |
|
Preference number: 3 (lower is better) Translates to: LRVKVTRLRSEV*CCPFSGLHSTA Trigger: GGCAGTGCTGTGAAGCCCACTGAAGGGACAGCACCATACCTCACTTCTCAGTCTGGTCACTTTAACCCTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | CTGAAGGCTCACTGGGTGGAAAAGAGGCCAAAGACATaGTTTGTTTCGGAGAGGGAGCTGGGACCAAGGACA | + |
|
Preference number: 3 (lower is better) Translates to: LKAHWVEKRPKT*FVSERELGPRT Trigger: TGTCCTTGGTCCCAGCTCCCTCTCCGAAACAAACCATGTCTTTGGCCTCTTTTCCACCCAGTGAGCCTTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR-3UTR CAA 90 bp | GGACAGCTAGGGGCTCCAGCATTACTGGAGCCAAGTGGGGAAAGCAGCTCTCAGAGAGGGGAAGCTGGCTaGAAAACAGAAACATTAACC | + |
|
Preference number: 3 (lower is better) Translates to: GQLGAPALLEPSGESSSQRGEAG*KTETLT Trigger: GGTTAATGTTTCTGTTTTCAAGCCAGCTTCCCCTCT...CTGAGAGCTGCTTTCCCCACTTGGCTCCAGTAATGCTGGAGCCCCTAGCTGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR TCA 72 bp | CTGCTTTGCTGGGTCCTCTGTCCTCCCCTCCTGCGGTaGCAGGAAAGCAGTCTGGCTTTAAGATATAGCAAA | + |
|
Preference number: 3 (lower is better) Translates to: LLCWVLCPPLLR*QESSLALRYSK Trigger: TTTGCTATATCTTAAAGCCAGACTGCTTTCCTGTCACCGCAGGAGGGGAGGACAGAGGACCCAGCAAAGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR TCA 72 bp | GCCTGTGCCACCGGGCTTGACTTATTAGGCACTTTCTaGAGGCTCACTGGGTGGAAAAGAGGCCAAAGACAT | + |
|
Preference number: 3 (lower is better) Translates to: ACATGLDLLGTF*RLTGWKRGQRH Trigger: ATGTCTTTGGCCTCTTTTCCACCCAGTGAGCCTTCAGAAAGTGCCTAATAAGTCAAGCCCGGTGGCACAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CCA 72 bp | AGAGGCCAAAGACATGGTTTGTTTCGGAGAGGGAGCTaGGACCAAGGACAGTGTATAAAGGCAGCCAAGGAA | + |
|
Preference number: 3 (lower is better) Translates to: RGQRHGLFRRGS*DQGQCIKAAKE Trigger: TTCCTTGGCTGCCTTTATACACTGTCCTTGGTCCCAGCTCCCTCTCCGAAACAAACCATGTCTTTGGCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CCA 72 bp | ATTCTTTCATCACAACAAGGCAGGTCCAGGGAATGTTaGCCAGCCCTCGTGCTCAGGATCATCAGGATACTG | + |
|
Preference number: 3 (lower is better) Translates to: ILSSQQGRSREC*PALVLRIIRIL Trigger: CAGTATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTTGTGATGAAAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR TCA 72 bp | AGCTTCCTGGTCCACATCAGAGAGGGGGAATGTGACTaGTCTGAGATTCTTTCATCACAACAAGGCAGGTCC | + |
|
Preference number: 3 (lower is better) Translates to: SFLVHIREGECD*SEILSSQQGRS Trigger: GGACCTGCCTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGACCAGGAAGCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR GCA 72 bp | CTTCAGTTCTATCCCAGGTGGGTAACTCTGGGTGGCTaGTCTCTTTCATCATCAGATGCCCCTTTCAGTGTT | + |
|
Preference number: 3 (lower is better) Translates to: LQFYPRWVTLGG*SLSSSDAPFSV Trigger: AACACTGAAAGGGGCATCTGATGATGAAAGAGAGCAGCCACCCAGAGTTACCCACCTGGGATAGAACTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | AAGTCTTCAGTTCTATCCCAGGTGGGTAACTCTGGGTaGCTGCTCTCTTTCATCATCAGATGCCCCTTTCAG | + |
|
Preference number: 3 (lower is better) Translates to: KSSVLSQVGNSG*LLSFIIRCPFQ Trigger: CTGAAAGGGGCATCTGATGATGAAAGAGAGCAGCCACCCAGAGTTACCCACCTGGGATAGAACTGAAGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | GGCCACACTGTCGTCTGTGGCTCACAGAGGGGAAGCTaGCTTGAAAACAGAAACATTAACCCTTTGACAGAA | + |
|
Preference number: 3 (lower is better) Translates to: GHTVVCGSQRGS*LENRNINPLTE Trigger: TTCTGTCAAAGGGTTAATGTTTCTGTTTTCAAGCCAGCTTCCCCTCTGTGAGCCACAGACGACAGTGTGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CCA 72 bp | GGGTCCATTGTTGAAACTAGGCTATTGGAAGCTTCCTaGTCCACATCAGAGAGGGGGAATGTGACTGATCTG | + |
|
Preference number: 3 (lower is better) Translates to: GSIVETRLLEAS*STSERGNVTDL Trigger: CAGATCAGTCACATTCCCCCTCTCTGATGTGGACCAGGAAGCTTCCAATAGCCTAGTTTCAACAATGGACCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR-3UTR CAA 90 bp | TACATGCATGGGTATATAAATGTCCAGACAGTCTCTTTCCAGGAAGGATTCCAGGTTGAAACTAGGCTATaGGAAGCTTCCTGGTCCACA | + |
|
Preference number: 3 (lower is better) Translates to: YMHGYINVQTVSFQEGFQVETRL*EASWST Trigger: TGTGGACCAGGAAGCTTCCAATAGCCTAGTTTCAAC...CTGGAATCCTTCCTGGAAAGAGACTGTCTGGACATTTATATACCCATGCATGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR GCA 72 bp | TTCTCCTCCTTTAGTTATTCAAATTTTAGGAGTATTTaGCTGCATGCCTGTAAGCACCTCACGCATACCTGC | + |
|
Preference number: 3 (lower is better) Translates to: FSSFSYSNFRSI*LHACKHLTHTC Trigger: GCAGGTATGCGTGAGGTGCTTACAGGCATGCAGGCAAATACTCCTAAAATTTGAATAACTAAAGGAGGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CAA 72 bp | GTGGTTGGGCACTGGGAAGCTGCCTGGGAAGTGTTCTaGGAAGGCTGTCCCCGAGCTTCTGGAGGACACACG | + |
|
Preference number: 4 (lower is better) Translates to: VVGHWEAAWEVF*EGCPRASGGHT Trigger: CGTGTGTCCTCCAGAAGCTCGGGGACAGCCTTCCAAGAACACTTCCCAGGCAGCTTCCCAGTGCCCAACCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| CDS-3UTR TCA 90 bp | GGACAGCTAGGGGCTCCAGCATTACTGGAGCCAAGTGGGGAAAGCAGCTCTCAGCACCTATGGAGAACGTaGGGCCTTTCCCTGCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: GQLGAPALLEPSGESSSQHLWRT*GLSLQT Trigger: AGTTTGCAGGGAAAGGCCTCACGTTCTCCATAGGTG...CTGAGAGCTGCTTTCCCCACTTGGCTCCAGTAATGCTGGAGCCCCTAGCTGTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CAA 72 bp | AGTGGTGTTCCTTCCTGCCTCAGCCTCCACCACAGGTaGCAGACGGAGCATGTCACAGAAGTCTTCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SGVPSCLSLHHR*QTEHVTEVFSS Trigger: AGAACTGAAGACTTCTGTGACATGCTCCGTCTGCAACCTGTGGTGGAGGCTGAGGCAGGAAGGAACACCACT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| CDS-3UTR TCA 90 bp | TCACAACAAGGCAGGTCCAGGGAATGTTGGCCAGCCCTCGTGCTCAGGATCATCCAGTTTCTCAAAATCTaGCCCACCTACCACTCCAAT | + |
|
Preference number: 4 (lower is better) Translates to: SQQGRSRECWPALVLRIIQFLKI*PTYHSN Trigger: ATTGGAGTGGTAGGTGGGTCAGATTTTGAGAAACTG...GATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTTGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| CDS-3UTR TCA 90 bp | CTCAGCCTCCACCACAGGTTGCAGACGGAGCATGTCACAGAAGTCTTCAGTTCTCAGTTCTGGGGTCTGTaGAGATCTCATGGTCATTGC | + |
|
Preference number: 4 (lower is better) Translates to: LSLHHRLQTEHVTEVFSSQFWGL*RSHGHC Trigger: GCAATGACCATGAGATCTTCACAGACCCCAGAACTG...AGAACTGAAGACTTCTGTGACATGCTCCGTCTGCAACCTGTGGTGGAGGCTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| CDS-3UTR TCA 90 bp | AGCCAAGTGGGGAAAGCAGCTCTCAGAAGCCAAGTTCTCTGCCAACCTGGGGTATCCCCCAGATGCCCTTaGATATTCTGCTTACACAAT | + |
|
Preference number: 4 (lower is better) Translates to: SQVGKAALRSQVLCQPGVSPRCP*IFCLHN Trigger: ATTGTGTAAGCAGAATATTCAAGGGCATCTGGGGGA...TACCCCAGGTTGGCAGAGAACTTGGCTTCTGAGAGCTGCTTTCCCCACTTGGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| CDS-3UTR GCA 90 bp | GCCTGGAGTCCACCTGGCACAGTGGGAGACACTGGACCTGCAGGTAGAACACAGACATCATTTCCCAGTTaGTCTTGCAGTTTCTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: AWSPPGTVGDTGPAGRTQTSFPS*SCSFSK Trigger: TTTTGAGAAACTGCAAGAGCAACTGGGAAATGATGT...CTGTGTTCTACCTGCAGGTCCAGTGTCTCCCACTGTGCCAGGTGGACTCCAGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CAA 72 bp | GATTCTTTCATCACAACAAGGCAGGTCCAGGGAATGTaGGCCAGCCCTCGTGCTCAGGATCATCAGGATACT | + |
|
Preference number: 4 (lower is better) Translates to: DSFITTRQVQGM*ASPRAQDHQDT Trigger: AGTATCCTGATGATCCTGAGCACGAGGGCTGGCCAACATTCCCTGGACCTGCCTTGTTGTGATGAAAGAATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| CDS-3UTR GCA 90 bp | GGAGTCCACCTGGCACAGTGGGAGACACTGGACCTGCAGGTAGAACACAGCATCAGGGAGTTTAATGTTTaGAATGTAGCTCAGACAGTA | + |
|
Preference number: 4 (lower is better) Translates to: GVHLAQWETLDLQVEHSIREFNV*NVAQTV Trigger: TACTGTCTGAGCTACATTGCAAACATTAAACTCCCT...GATGCTGTGTTCTACCTGCAGGTCCAGTGTCTCCCACTGTGCCAGGTGGACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| CDS-3UTR CCA 90 bp | GGTTGCAGACGGAGCATGTCACAGAAGTCTTCAGTTCTATCCCAGGTGGGTAACTCTGTGAAGATCTCATaGTCATTGCCACCCGGCATA | + |
|
Preference number: 4 (lower is better) Translates to: GCRRSMSQKSSVLSQVGNSVKIS*SLPPGI Trigger: TATGCCGGGTGGCAATGACCATGAGATCTTCACAGA...GTTACCCACCTGGGATAGAACTGAAGACTTCTGTGACATGCTCCGTCTGCAACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CAA 72 bp | AGCCAAGTTCTCTGCCAACCTGGGGTAGACACCCTTTaGACACTGAGGGTTAAAGTGACCAGACTGAGAAGT | + |
|
Preference number: 4 (lower is better) Translates to: SQVLCQPGVDTL*TLRVKVTRLRS Trigger: ACTTCTCAGTCTGGTCACTTTAACCCTCAGTGTCAAAAGGGTGTCTACCCCAGGTTGGCAGAGAACTTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
||
| 3UTR CAA 72 bp | AGAAGGGCAAGGAGGCACTTGTTTCTAGAAGGACTCTaGAGGAACAAGGAAGATGGAGTCTGTCCTGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: RRARRHLFLEGL*RNKEDGVCPGV Trigger: GACACCAGGACAGACTCCATCTTCCTTGTTCCTCAAGAGTCCTTCTAGAAACAAGTGCCTCCTTGCCCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
||
| 3UTR CAA 72 bp | ATGAGCTCTCTGGGGTCCATTGTTGAAACTAGGCTATaGGAAGCTTCCTGGTCCACATCAGAGAGGGGGAAT | + |
|
Preference number: 4 (lower is better) Translates to: MSSLGSIVETRL*EASWSTSERGN Trigger: ATTCCCCCTCTCTGATGTGGACCAGGAAGCTTCCAATAGCCTAGTTTCAACAATGGACCCCAGAGAGCTCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR TCA 90 bp | GGTTGCAGACGGAGCATGTCACAGAAGTCTTCAGTTCTATCCCAGGTGGGTAACCAGTTTCTCAAAATCTaGCCCACCTACCACTCCAAT | + |
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Preference number: 4 (lower is better) Translates to: GCRRSMSQKSSVLSQVGNQFLKI*PTYHSN Trigger: ATTGGAGTGGTAGGTGGGTCAGATTTTGAGAAACTG...GTTACCCACCTGGGATAGAACTGAAGACTTCTGTGACATGCTCCGTCTGCAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| 3UTR CAA 72 bp | GACTGCTGTCTCTCTGTGTGTGATGAGGACACCCACTaGGATGTCTTCCTCTATCCTTCTCCTCCTTTAGTT | + |
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Preference number: 4 (lower is better) Translates to: DCCLSVCDEDTH*DVFLYPSPPLV Trigger: AACTAAAGGAGGAGAAGGATAGAGGAAGACATCCAAGTGGGTGTCCTCATCACACACAGAGAGACAGCAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR CCA 90 bp | TCCTGGTCCACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACTCTGTGAAGATCTCATaGTCATTGCCACCCGGCATA | + |
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Preference number: 4 (lower is better) Translates to: SWSTSERGNVTDLRFFHHSVKIS*SLPPGI Trigger: TATGCCGGGTGGCAATGACCATGAGATCTTCACAGA...GTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGACCAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR TCA 90 bp | TCCACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACAACAAGCAGTTCTGGGGTCTGTaGAGATCTCATGGTCATTGC | + |
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Preference number: 4 (lower is better) Translates to: STSERGNVTDLRFFHHNKQFWGL*RSHGHC Trigger: GCAATGACCATGAGATCTTCACAGACCCCAGAACTG...CTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR TCA 90 bp | TCCACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACAACAAGTCCCCCAGATGCCCTTaGATATTCTGCTTACACAAT | + |
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Preference number: 4 (lower is better) Translates to: STSERGNVTDLRFFHHNKSPRCP*IFCLHN Trigger: ATTGTGTAAGCAGAATATTCAAGGGCATCTGGGGGA...CTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR GCA 90 bp | AAGGAGGCACTTGTTTCTAGAAGGACTCTTGAGGAACAAGGAAGATGGAGTCTGACATCATTTCCCAGTTaGTCTTGCAGTTTCTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: KEALVSRRTLEEQGRWSLTSFPS*SCSFSK Trigger: TTTTGAGAAACTGCAAGAGCAACTGGGAAATGATGT...CAGACTCCATCTTCCTTGTTCCTCAAGAGTCCTTCTAGAAACAAGTGCCTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR GCA 90 bp | TCCACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACAACAAGAGGGAGTTTAATGTTTaGAATGTAGCTCAGACAGTA | + |
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Preference number: 4 (lower is better) Translates to: STSERGNVTDLRFFHHNKREFNV*NVAQTV Trigger: TACTGTCTGAGCTACATTGCAAACATTAAACTCCCT...CTTGTTGTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR CAA 90 bp | CGAGCTTCTGGAGGACACACGTGCACTCTCCAAGAAGAGGCTGGAGAGCACCCCCTCCCCCAGATGCCCTaGAATATTCTGCTTACACAA | + |
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Preference number: 5 (lower is better) Translates to: RASGGHTCTLQEEAGEHPLPQMP*NILLTQ Trigger: TTGTGTAAGCAGAATATTCAAGGGCATCTGGGGGAG...GGGGTGCTCTCCAGCCTCTTCTTGGAGAGTGCACGTGTGTCCTCCAGAAGCTCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| CDS-3UTR CAA 90 bp | TATCCCAGGTGGGTAACTCTGGGTGGCTGCTCTCTTTCATCATCAGATGCCCCTAAGATCTCATGGTCATaGCCACCCGGCATAGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: YPRWVTLGGCSLSSSDAPKISWS*PPGIVL Trigger: CAAGACTATGCCGGGTGGCAATGACCATGAGATCTT...AGGGGCATCTGATGATGAAAGAGAGCAGCCACCCAGAGTTACCCACCTGGGATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023396.10 |
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| CDS GCA 90 bp | GTCAATGCTGATTTGGCCACCTATGGAGAACGTGAGGCCTTTCCCTaGAAACTCCTTCCGCAGGTCTGCTACGAACTTTTGTCGTATATG | + |
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Preference number: 5 (lower is better) Translates to: VNADLATYGEREAFP*KLLPQVCYELLSYM Trigger: CATATACGACAAAAGTTCGTAGCAGACCTGCGGAAGGAGTTTGCAGGGAAAGGCCTCACGTTCTCCATAGGTGGCCAAATCAGCATTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023396.10 ENSMUST00000230828.2 |
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| CDS-3UTR CAA 90 bp | TCCATTGTTGAAACTAGGCTATTGGAAGCTTCCTGGTCCACATCAGAGAGGGGGAAGATCTCATGGTCATaGCCACCCGGCATAGTCTTG | + |
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Preference number: 5 (lower is better) Translates to: SIVETRLLEASWSTSERGKISWS*PPGIVL Trigger: CAAGACTATGCCGGGTGGCAATGACCATGAGATCTT...CCCCCTCTCTGATGTGGACCAGGAAGCTTCCAATAGCCTAGTTTCAACAATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS-3UTR CAA 90 bp | TCCTGGTCCACATCAGAGAGGGGGAATGTGACTGATCTGAGATTCTTTCATCACCTCCCCCAGATGCCCTaGAATATTCTGCTTACACAA | + |
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Preference number: 5 (lower is better) Translates to: SWSTSERGNVTDLRFFHHLPQMP*NILLTQ Trigger: TTGTGTAAGCAGAATATTCAAGGGCATCTGGGGGAG...GTGATGAAAGAATCTCAGATCAGTCACATTCCCCCTCTCTGATGTGGACCAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000230828.2 |
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| CDS GCA 72 bp | GATTTGGCCACCTATGGAGAACGTGAGGCCTTTCCCTaGAAACTCCTTCCGCAGGTCTGCTACGAACTTTTG | + |
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Preference number: 6 (lower is better) Translates to: DLATYGEREAFP*KLLPQVCYELL Trigger: CAAAAGTTCGTAGCAGACCTGCGGAAGGAGTTTGCAGGGAAAGGCCTCACGTTCTCCATAGGTGGCCAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023396.10 ENSMUST00000230828.2 |
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| CDS GCA 72 bp | AATGAAAGTTCCCCTTTTCTTAGGGAGTTTAATGTTTaGAATGTAGCTCAGACAGTAGTTGATCAGGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: NESSPFLREFNV*NVAQTVVDQVL Trigger: CAAGACCTGATCAACTACTGTCTGAGCTACATTGCAAACATTAAACTCCCTAAGAAAAGGGGAACTTTCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023396.10 ENSMUST00000230828.2 |
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