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Pregenerated sensors for PMIS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000049761

Ensembl transcript IDs: ENSMUST00000051495.7

Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTTTCATGAAAGAGCAGCTCAGTGGCTTATGCAGATTTAGAACTTaGGATGTGGACTTCCAAGATGCTTTTAGACAGCCGTGGAAGACA +
Preference number: 1 (lower is better)
Translates to: FFMKEQLSGLCRFRT*DVDFQDAFRQPWKT
Trigger: TGTCTTCCACGGCTGTCTAAAAGCATCTTGGAAGTCCACATCTCAAGTTCTAAATCTGCATAAGCCACTGAGCTGCTCTTTCATGAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR-3UTR TCA 90 bp ATGCTTTTAGACAGCCGTGGAAGACAAATGAGAATGAACTGGTGGAGTGTAGTCTGGCAAGGGCATTTCTaGAGCTCTGAGTTTCTTCTT +
Preference number: 2 (lower is better)
Translates to: MLLDSRGRQMRMNWWSVVWQGHF*SSEFLL
Trigger: AAGAAGAAACTCAGAGCTTCAGAAATGCCCTTGCCA...GACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAAAAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR CCA 72 bp CTTTTAGACAGCCGTGGAAGACAAATGAGAATGAACTaGTGGAGTGTAGTCAGGTGGCCTGCCTGGGGCCGT +
Preference number: 3 (lower is better)
Translates to: LLDSRGRQMRMN*WSVVRWPAWGR
Trigger: ACGGCCCCAGGCAGGCCACCTGACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR CCA 72 bp TTAGACAGCCGTGGAAGACAAATGAGAATGAACTGGTaGAGTGTAGTCAGGTGGCCTGCCTGGGGCCGTTTT +
Preference number: 3 (lower is better)
Translates to: LDSRGRQMRMNW*SVVRWPAWGRF
Trigger: AAAACGGCCCCAGGCAGGCCACCTGACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR-3UTR CAA 90 bp CAGCCGTGGAAGACAAATGAGAATGAACTGGTGGAGTGTAGTCAGGTGGCCTGCTGGTTGGTGGGTTTCTaGGCAAGGGCATTTCTGAAG +
Preference number: 3 (lower is better)
Translates to: QPWKTNENELVECSQVACWLVGF*ARAFLK
Trigger: CTTCAGAAATGCCCTTGCCAAGAAACCCACCAACCA...GCAGGCCACCTGACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR-3UTR CAA 90 bp TTAGACAGCCGTGGAAGACAAATGAGAATGAACTGGTGGAGTGTAGTCAGGTGGGCTCTGAGTTTCTTCTaGATGGCTGGTCAAAGTCTA +
Preference number: 3 (lower is better)
Translates to: LDSRGRQMRMNWWSVVRWALSFF*MAGQSL
Trigger: TAGACTTTGACCAGCCATCAAGAAGAAACTCAGAGC...CCACCTGACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR-3UTR CAA 90 bp ATGCTTTTAGACAGCCGTGGAAGACAAATGAGAATGAACTGGTGGAGTGTAGTCTGGATGTTGAGTTTTTaGGTTGGTGGGTTTCTTGGC +
Preference number: 3 (lower is better)
Translates to: MLLDSRGRQMRMNWWSVVWMLSF*VGGFLG
Trigger: GCCAAGAAACCCACCAACCAAAAAACTCAACATCCA...GACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAAAAGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR TCA 72 bp AAAGAGCAGCTCAGTGGCTTATGCAGATTTAGAACTTaGGATGTGGACTTCCAAGATGCTTTTAGACAGCCG +
Preference number: 3 (lower is better)
Translates to: KEQLSGLCRFRT*DVDFQDAFRQP
Trigger: CGGCTGTCTAAAAGCATCTTGGAAGTCCACATCTCAAGTTCTAAATCTGCATAAGCCACTGAGCTGCTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
3UTR CCA 72 bp AGCTCAGTGGCTTATGCAGATTTAGAACTTGAGATGTaGACTTCCAAGATGCTTTTAGACAGCCGTGGAAGA +
Preference number: 3 (lower is better)
Translates to: SSVAYADLELEM*TSKMLLDSRGR
Trigger: TCTTCCACGGCTGTCTAAAAGCATCTTGGAAGTCCACATCTCAAGTTCTAAATCTGCATAAGCCACTGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS-3UTR GCA 90 bp CAGCCGTGGAAGACAAATGAGAATGAACTGGTGGAGTGTAGTCAGGTGGCCTGCCGTCTTCCCAGTTGCTaGATTTATTGGCTTCGTTGG +
Preference number: 4 (lower is better)
Translates to: QPWKTNENELVECSQVACRLPSC*IYWLRW
Trigger: CCAACGAAGCCAATAAATGCAGCAACTGGGAAGACG...GCAGGCCACCTGACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS-3UTR GCA 90 bp GCTTTTAGACAGCCGTGGAAGACAAATGAGAATGAACTGGTGGAGTGTAGTCAGAGGCGTCTTCCCAGTTaGTGCATTTATTGGCTTCGT +
Preference number: 4 (lower is better)
Translates to: AFRQPWKTNENELVECSQRRLPS*CIYWLR
Trigger: ACGAAGCCAATAAATGCAGCAACTGGGAAGACGCCT...CTGACTACACTCCACCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS-3UTR CCA 90 bp TGGACTTCCAAGATGCTTTTAGACAGCCGTGGAAGACAAATGAGAATGAACTGGAGTTGCTGCATTTATTaGCTTCGTTGGTCTGGATGC +
Preference number: 4 (lower is better)
Translates to: WTSKMLLDSRGRQMRMNWSCCIY*LRWSGC
Trigger: GCATCCAGACCAACGAAGCCAATAAATGCAGCAACT...CCAGTTCATTCTCATTTGTCTTCCACGGCTGTCTAAAAGCATCTTGGAAGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS-3UTR TCA 90 bp CTTGGCAAGGGCATTTCTGAAGCTCTGAGTTTCTTCTTGATGGCTGGTCAAAGTGGACAAGTATATAAATaGTGCCTACAAAGGCTACTA +
Preference number: 4 (lower is better)
Translates to: LGKGISEALSFFLMAGQSGQVYK*CLQRLL
Trigger: TAGTAGCCTTTGTAGGCATCATTTATATACTTGTCC...ACTTTGACCAGCCATCAAGAAGAAACTCAGAGCTTCAGAAATGCCCTTGCCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS-3UTR CAA 90 bp TTTTTGGTTGGTGGGTTTCTTGGCAAGGGCATTTCTGAAGCTCTGAGTTTCTTCCAGTTGCTGCATTTATaGGCTTCGTTGGTCTGGATG +
Preference number: 5 (lower is better)
Translates to: FLVGGFLGKGISEALSFFQLLHL*ASLVWM
Trigger: CATCCAGACCAACGAAGCCAATAAATGCAGCAACTG...GAAGAAACTCAGAGCTTCAGAAATGCCCTTGCCAAGAAACCCACCAACCAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS TCA 90 bp ATATCCCAAAGGGTAGGAAAAGAATCATCGCCAAGAGAGCCAGCATaGCATAATTCCGAGCGTAAAATTTCAGTTCATCTGGAGTCTGTG +
Preference number: 5 (lower is better)
Translates to: ISQRVGKESSPREPA*HNSERKISVHLESV
Trigger: CACAGACTCCAGATGAACTGAAATTTTACGCTCGGAATTATGTCATGCTGGCTCTCTTGGCGATGATTCTTTTCCTACCCTTTGGGATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS TCA 72 bp TACTATGGCCAACATATTAAACCACATAGTTCGAGATaGGTTCCGGTAGGCGTCTTCCCAGTTGCTGCATTT +
Preference number: 6 (lower is better)
Translates to: YYGQHIKPHSSR*VPVGVFPVAAF
Trigger: AAATGCAGCAACTGGGAAGACGCCTACCGGAACTCATCTCGAACTATGTGGTTTAATATGTTGGCCATAGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7
CDS TCA 72 bp AGGGTAGGAAAAGAATCATCGCCAAGAGAGCCAGCATaGCATAATTCCGAGCGTAAAATTTCAGTTCATCTG +
Preference number: 6 (lower is better)
Translates to: RVGKESSPREPA*HNSERKISVHL
Trigger: CAGATGAACTGAAATTTTACGCTCGGAATTATGTCATGCTGGCTCTCTTGGCGATGATTCTTTTCCTACCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000051495.7