Pregenerated sensors for PMF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028066Ensembl transcript IDs: ENSMUST00000056370.13, ENSMUST00000192909.2, ENSMUST00000193338.6
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGTGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTaGGAGAGGGGGAGGATCAGAAGGGCATGGGGCAGCGCTGGCTGC | + |
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Preference number: 1 (lower is better) Translates to: QWRLKPCPNPIQGGR*ERGRIRRAWGSAGC Trigger: GCAGCCAGCGCTGCCCCATGCCCTTCTGATCCTCCCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCACTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR GCA 90 bp | CGGTGGGAGAGGGGGAGGATCAGAAGGGCATGGGGCAGCGCTGGCTaGAACTCCAGAAGACAAAGCCTGGTGTCTGATGCCAGGGTGGGA | + |
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Preference number: 1 (lower is better) Translates to: RWERGRIRRAWGSAG*NSRRQSLVSDARVG Trigger: TCCCACCCTGGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCATGCCCTTCTGATCCTCCCCCTCTCCCACCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 90 bp | GAAGGGCATGGGGCAGCGCTGGCTGCAACTCCAGAAGACAAAGCCTaGTGTCTGATGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAG | + |
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Preference number: 1 (lower is better) Translates to: EGHGAALAATPEDKA*CLMPGWESQSCRQK Trigger: CTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCATGCCCTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 90 bp | CGGCAGGAATCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTaGTGGGGACTCCATTACTGCCTGGAAACTGCCTCCACAGGCGCT | + |
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Preference number: 1 (lower is better) Translates to: RQESEGSVTPAEPKR*WGLHYCLETASTGA Trigger: AGCGCCTGTGGAGGCAGTTTCCAGGCAGTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR TCA 90 bp | CCAATCCTGCAGGCAGAAGATGGCGGCAGGAATCTGAAGGCAGTGTaGCCCCAGCAGAACCTAAGCGGTGGTGGGGACTCCATTACTGCC | + |
|
Preference number: 1 (lower is better) Translates to: PILQAEDGGRNLKAV*PQQNLSGGGDSITA Trigger: GGCAGTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCATCTTCTGCCTGCAGGATTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 90 bp | CAGGAATCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTaGGGACTCCATTACTGCCTGGAAACTGCCTCCACAGGCGCTCTA | + |
|
Preference number: 1 (lower is better) Translates to: QESEGSVTPAEPKRW*GLHYCLETASTGAL Trigger: TAGAGCGCCTGTGGAGGCAGTTTCCAGGCAGTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR TCA 90 bp | GGCAGGGCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCACAAAGCCTGGTGTCTaGTGCCAGGGTGGGAGTCCC | + |
|
Preference number: 2 (lower is better) Translates to: GRALGLASKAAISQGEQGTKPGV*CQGGSP Trigger: GGGACTCCCACCCTGGCATCAGACACCAGGCTTTGT...GCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGCCCTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR CCA 90 bp | GTGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTGGGAGAGGGGAGGATCAGAAGGGCATaGGGCAGCGCTGGCTGCAAC | + |
|
Preference number: 2 (lower is better) Translates to: VETETLPKSYPGRAVGEGRIRRA*GSAGCN Trigger: GTTGCAGCCAGCGCTGCCCCATGCCCTTCTGATCCT...CCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR TCA 90 bp | GCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCAATATGGCGGCAGGAATCTaGAGGCAGTGTGACCCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: ALGLASKAAISQGEQGGNMAAGI*RQCDPS Trigger: GCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCAT...ATTGCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR GCA 90 bp | GGCAGGGCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCTTACTGCCTGGAAACTaGCTCCACAGGCGCTCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: GRALGLASKAAISQGEQGLLPGN*LHRRSR Trigger: TCTAGAGCGCCTGTGGAGGCAGTTTCCAGGCAGTAA...GCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGCCCTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR GCA 90 bp | CTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCAATCAGTGGGGCAGCGCTGGCTaGAACTCCAGAAGACAAAGC | + |
|
Preference number: 2 (lower is better) Translates to: LGLASKAAISQGEQGGNQWGSAG*NSRRQS Trigger: GCTTTGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCA...CTGATTGCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR GCA 90 bp | TCAGGGAGAACAAGGCGGCAATCAGTGGAGACTGAAACCCTGCCCAAATCCTATTGGGAGTCCCAATCCTaGAGGCAGAAGATGGCGGCA | + |
|
Preference number: 2 (lower is better) Translates to: SGRTRRQSVETETLPKSYWESQS*RQKMAA Trigger: TGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCA...ATAGGATTTGGGCAGGGTTTCAGTCTCCACTGATTGCCGCCTTGTTCTCCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR TCA 90 bp | CAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCAATCAGTGGAGACTGAAAATCTGAAGGCAGTGTaGCCCCAGCAGAACCTAAGC | + |
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Preference number: 2 (lower is better) Translates to: QQGSNQSGRTRRQSVETENLKAV*PQQNLS Trigger: GCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATT...TTCAGTCTCCACTGATTGCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR-3UTR GCA 90 bp | AGTCAGGGAGAACAAGGCGGCAATCAGTGGAGACTGAAACCCTGCCCAAATCCTTTACTGCCTGGAAACTaGCTCCACAGGCGCTCTAGA | + |
|
Preference number: 2 (lower is better) Translates to: SQGEQGGNQWRLKPCPNPLLPGN*LHRRSR Trigger: TCTAGAGCGCCTGTGGAGGCAGTTTCCAGGCAGTAA...AGGATTTGGGCAGGGTTTCAGTCTCCACTGATTGCCGCCTTGTTCTCCCTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | CTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTaGGAGAGGGGGAGGATCAGAAGGGCATGGGGCAGC | + |
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Preference number: 3 (lower is better) Translates to: LKPCPNPIQGGR*ERGRIRRAWGS Trigger: GCTGCCCCATGCCCTTCTGATCCTCCCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | GGGGCAGCGCTGGCTGCAACTCCAGAAGACAAAGCCTaGTGTCTGATGCCAGGGTGGGAGTCCCAATCCTGC | + |
|
Preference number: 3 (lower is better) Translates to: GAALAATPEDKA*CLMPGWESQSC Trigger: GCAGGATTGGGACTCCCACCCTGGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGCCAGCGCTGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR TCA 72 bp | CAGGCAGAAGATGGCGGCAGGAATCTGAAGGCAGTGTaGCCCCAGCAGAACCTAAGCGGTGGTGGGGACTCC | + |
|
Preference number: 3 (lower is better) Translates to: QAEDGGRNLKAV*PQQNLSGGGDS Trigger: GGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCATCTTCTGCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR GCA 72 bp | AGGGGGAGGATCAGAAGGGCATGGGGCAGCGCTGGCTaGAACTCCAGAAGACAAAGCCTGGTGTCTGATGCC | + |
|
Preference number: 3 (lower is better) Translates to: RGRIRRAWGSAG*NSRRQSLVSDA Trigger: GGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCATGCCCTTCTGATCCTCCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | TGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAGATaGCGGCAGGAATCTGAAGGCAGTGTGACCCCAGCA | + |
|
Preference number: 3 (lower is better) Translates to: CQGGSPNPAGRR*RQESEGSVTPA Trigger: TGCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR TCA 72 bp | CGCTGGCTGCAACTCCAGAAGACAAAGCCTGGTGTCTaGTGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: RWLQLQKTKPGV*CQGGSPNPAGR Trigger: TCTGCCTGCAGGATTGGGACTCCCACCCTGGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGCCAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | GAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTaGGGACTCCATTACTGCCTGGAAACTGCCTCCACA | + |
|
Preference number: 3 (lower is better) Translates to: EGSVTPAEPKRW*GLHYCLETAST Trigger: TGTGGAGGCAGTTTCCAGGCAGTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | TCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTaGTGGGGACTCCATTACTGCCTGGAAACTGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: SEGSVTPAEPKR*WGLHYCLETAS Trigger: GGAGGCAGTTTCCAGGCAGTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | ACTCCAGAAGACAAAGCCTGGTGTCTGATGCCAGGGTaGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCA | + |
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Preference number: 3 (lower is better) Translates to: TPEDKAWCLMPG*ESQSCRQKMAA Trigger: TGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCATCAGACACCAGGCTTTGTCTTCTGGAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR TCA 72 bp | TCAGTCAGGGAGAACAAGGCGGCAATCAGTGGAGACTaGAACCCTGCCCAAATCCTATCCAGGGAGGGCGGT | + |
|
Preference number: 3 (lower is better) Translates to: SVRENKAAISGD*NPAQILSREGG Trigger: ACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCACTGATTGCCGCCTTGTTCTCCCTGACTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| 3UTR CCA 72 bp | CAGGTCTTTCTCTGGGATTCCACTGGGTCGCCAGGCTaGCTCTCCGCGCTCTCTGCCTTCTTCTATGATCTT | + |
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Preference number: 3 (lower is better) Translates to: QVFLWDSTGSPG*LSALSAFFYDL Trigger: AAGATCATAGAAGAAGGCAGAGAGCGCGGAGAGCCAGCCTGGCGACCCAGTGGAATCCCAGAGAAAGACCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000192909.2 |
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| 3UTR CCA 72 bp | GCAGCAATCAGTCAGGGAGAACAAGGCGGCAATCAGTaGAGACTGAAACCCTGCCCAAATCCTATCCAGGGA | + |
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Preference number: 3 (lower is better) Translates to: AAISQGEQGGNQ*RLKPCPNPIQG Trigger: TCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCACTGATTGCCGCCTTGTTCTCCCTGACTGATTGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | GTGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTGGGAGAGGGGAGGGCCCGAACCTGCTaGTGCAGCTCCTCCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: VETETLPKSYPGRAVGEGRARTC*CSSSTC Trigger: GCAGGTGGAGGAGCTGCAGCAGCAGGTTCGGGCCCT...CCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | GCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCAGGAATCTGAAGTGGAGGGCCCGAACCTaGTGCTGCAGCTCCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: ARVGVPILQAEDGGRNLKWRART*CCSSST Trigger: GGTGGAGGAGCTGCAGCAGCAGGTTCGGGCCCTCCA...CTTCAGATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | GATGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCAGGAATCTGTGGAGGGCCCGAACCTaGTGCTGCAGCTCCTCCACC | + |
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Preference number: 4 (lower is better) Translates to: DARVGVPILQAEDGGRNLWRART*CCSSST Trigger: GGTGGAGGAGCTGCAGCAGCAGGTTCGGGCCCTCCA...CAGATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCATC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | GAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTGGGGACTCCATTACTGCAGGGCCCGAACCTGCTaGTGCAGCTCCTCCACCTGC | + |
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Preference number: 4 (lower is better) Translates to: EGSVTPAEPKRWWGLHYCRARTC*CSSSTC Trigger: GCAGGTGGAGGAGCTGCAGCAGCAGGTTCGGGCCCT...GCAGTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | GAGGGGGAGGATCAGAAGGGCATGGGGCAGCGCTGGCTGCAACTCCAGAAGACAAGAGCCTGCCATGTTTaGTGGAGGGCCCGAACCTGC | + |
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Preference number: 4 (lower is better) Translates to: EGEDQKGMGQRWLQLQKTRACHV*WRARTC Trigger: GCAGGTTCGGGCCCTCCAGCAAACATGGCAGGCTCT...TGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCATGCCCTTCTGATCCTCCCCCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | GGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCAGGAATCTGAAGGCAGTGTGAGAGCCTGCCATGTTTaGTGGAGGGCCCGAACCTGC | + |
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Preference number: 4 (lower is better) Translates to: GSPNPAGRRWRQESEGSVRACHV*WRARTC Trigger: GCAGGTTCGGGCCCTCCAGCAAACATGGCAGGCTCT...CACACTGCCTTCAGATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | AGGGCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCGCGTCGGCCAGTTCCTaGTTCTTGGCTTCCTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: RALGLASKAAISQGEQGGASASS*FLASCF Trigger: GAAACAGGAAGCCAAGAACCAGGAACTGGCCGACGC...GCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR TCA 90 bp | GAGGGGGAGGATCAGAAGGGCATGGGGCAGCGCTGGCTGCAACTCCAGAAGACAGGTTCCCCTCCTCTTTaGTTTCTGAGATTTCCTCGC | + |
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Preference number: 4 (lower is better) Translates to: EGEDQKGMGQRWLQLQKTGSPPL*FLRFPR Trigger: GCGAGGAAATCTCAGAAATCAAAGAGGAGGGGAACC...TGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCATGCCCTTCTGATCCTCCCCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR GCA 90 bp | GTGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTGGGAGAGGGGCTTCAGGAAGTAGGGTaGCATGACACTACACAGGTC | + |
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Preference number: 4 (lower is better) Translates to: VETETLPKSYPGRAVGEGLQEVG*HDTTQV Trigger: GACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAG...CCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | TCTGATGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCAGGAATTCTCTGTGTAGAGCCTaGCATGTTTGCTGGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: SDARVGVPILQAEDGGRNSLCRA*HVCWRA Trigger: GGCCCTCCAGCAAACATGGCAGGCTCTACACAGAGA...ATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCATCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | TGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTGGGAGAGGGGGAGATTTCCTCGCGGATaGATGTCTGCAACTGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: WRLKPCPNPIQGGRWERGRFPRG*MSATEP Trigger: TGGCTCAGTTGCAGACATCCATCCGCGAGGAAATCT...CCCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR CCA 90 bp | TGGCGGCAGGAATCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTGGACACAGGTCTTTCTCTaGGATTCCACTGGGTCGCCA | + |
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Preference number: 4 (lower is better) Translates to: WRQESEGSVTPAEPKRWWTQVFL*DSTGSP Trigger: TGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGT...CCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR CCA 90 bp | CATGGGGCAGCGCTGGCTGCAACTCCAGAAGACAAAGCCTGGTGTCTGATGCCAGCGTCGGCCAGTTCCTaGTTCTTGGCTTCCTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: HGAALAATPEDKAWCLMPASASS*FLASCF Trigger: GAAACAGGAAGCCAAGAACCAGGAACTGGCCGACGC...TGGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGCCAGCGCTGCCCCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | GATGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCAGGAATCTGACACAGGTCTTTCTCTaGGATTCCACTGGGTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: DARVGVPILQAEDGGRNLTQVFL*DSTGSP Trigger: AGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGT...CAGATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193338.6 |
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| CDS-3UTR TCA 90 bp | AGGGCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCCTCCTCTTTGATTTCTaGGATTTCCTCGCGGATGGA | + |
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Preference number: 4 (lower is better) Translates to: RALGLASKAAISQGEQGGLLFDF*DFLADG Trigger: TCCATCCGCGAGGAAATCTCAGAAATCAAAGAGGAG...GCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGCCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR TCA 90 bp | TGGGAGAGGGGGAGGATCAGAAGGGCATGGGGCAGCGCTGGCTGCAACTCCAGACTCTGCCTTCTTCTATaGTCTTATCCAGGGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: WERGRIRRAWGSAGCNSRLCLLL*SYPGSS Trigger: TGAACTCCCTGGATAAGATCATAGAAGAAGGCAGAG...TCTGGAGTTGCAGCCAGCGCTGCCCCATGCCCTTCTGATCCTCCCCCTCTCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR TCA 90 bp | TGGCGGCAGGAATCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTGGGGAAGTAGGGTGCCATaGCACTACACAGGTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: WRQESEGSVTPAEPKRWWGSRVP*HYTGLS Trigger: AGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCC...CCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR GCA 90 bp | TCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTGGGGACTCCATTACTCTCTGTGTAGAGCCTaGCATGTTTGCTGGAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: SEGSVTPAEPKRWWGLHYSLCRA*HVCWRA Trigger: GGCCCTCCAGCAAACATGGCAGGCTCTACACAGAGA...GTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | GTGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTGGGAGAGGGGCCAGTTCCTGGTTCTTaGCTTCCTGTTTCCGTACTT | + |
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Preference number: 4 (lower is better) Translates to: VETETLPKSYPGRAVGEGPVPGS*LPVSVL Trigger: AAGTACGGAAACAGGAAGCCAAGAACCAGGAACTGG...CCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | GCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCAATTCGGCGACTAGCTTCTaGAGGAAAGTGTCTACTATG | + |
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Preference number: 4 (lower is better) Translates to: ALGLASKAAISQGEQGGNSATSF*RKVSTM Trigger: CATAGTAGACACTTTCCTCCAGAAGCTAGTCGCCGA...ATTGCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | GCCCTTGGGCTAGCCAGCAAGGCAGCAATCAGTCAGGGAGAACAAGGCGGCAATCCAGTTCCTGGTTCTTaGCTTCCTGTTTCCGTACTT | + |
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Preference number: 4 (lower is better) Translates to: ALGLASKAAISQGEQGGNPVPGS*LPVSVL Trigger: AAGTACGGAAACAGGAAGCCAAGAACCAGGAACTGG...ATTGCCGCCTTGTTCTCCCTGACTGATTGCTGCCTTGCTGGCTAGCCCAAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR TCA 90 bp | GCAGCAATCAGTCAGGGAGAACAAGGCGGCAATCAGTGGAGACTGAAACCCTGCGGAAGTAGGGTGCCATaGCACTACACAGGTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: AAISQGEQGGNQWRLKPCGSRVP*HYTGLS Trigger: AGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCC...GCAGGGTTTCAGTCTCCACTGATTGCCGCCTTGTTCTCCCTGACTGATTGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | GCTGCAACTCCAGAAGACAAAGCCTGGTGTCTGATGCCAGGGTGGGAGTCCCAATCGGCGACTAGCTTCTaGAGGAAAGTGTCTACTATG | + |
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Preference number: 4 (lower is better) Translates to: AATPEDKAWCLMPGWESQSATSF*RKVSTM Trigger: CATAGTAGACACTTTCCTCCAGAAGCTAGTCGCCGA...TTGGGACTCCCACCCTGGCATCAGACACCAGGCTTTGTCTTCTGGAGTTGCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CCA 90 bp | ATGATCTTATCCAGGGAGTTCAGGACAGCTTCTAGGTTCCCCTCCTCTTTGATTTCGGCGACTAGCTTCTaGAGGAAAGTGTCTACTATG | + |
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Preference number: 4 (lower is better) Translates to: MILSREFRTASRFPSSLISATSF*RKVSTM Trigger: CATAGTAGACACTTTCCTCCAGAAGCTAGTCGCCGA...AATCAAAGAGGAGGGGAACCTAGAAGCTGTCCTGAACTCCCTGGATAAGATCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000192909.2 |
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| CDS CCA 90 bp | TTGCTTCAGGAAGTAGGGTGCCATGACACTACACAGGTCTTTCTCTaGGATTCCACTGGGTCGCCAGGCTGGCTCTCCGCGCTCTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: LLQEVGCHDTTQVFL*DSTGSPGWLSALSA Trigger: GGCAGAGAGCGCGGAGAGCCAGCCTGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR CAA 90 bp | TGGAGACTGAAACCCTGCCCAAATCCTATCCAGGGAGGGCGGTGGGAGAGGGGGGCCAGTTCCTGGTTCTaGGCTTCCTGTTTCCGTACT | + |
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Preference number: 5 (lower is better) Translates to: WRLKPCPNPIQGGRWERGASSWF*ASCFRT Trigger: AGTACGGAAACAGGAAGCCAAGAACCAGGAACTGGC...CCCCCTCTCCCACCGCCCTCCCTGGATAGGATTTGGGCAGGGTTTCAGTCTCCA 59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CAA 90 bp | TGGCGGCAGGAATCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTGGACACAGGGTATCCTGTaGCTTCAGGAAGTAGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: WRQESEGSVTPAEPKRWWTQGIL*LQEVGC Trigger: GCACCCTACTTCCTGAAGCAACAGGATACCCTGTGT...CCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGATTCCTGCCGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS-3UTR CAA 90 bp | TCTGATGCCAGGGTGGGAGTCCCAATCCTGCAGGCAGAAGATGGCGGCAGGAATGCCAGTTCCTGGTTCTaGGCTTCCTGTTTCCGTACT | + |
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Preference number: 5 (lower is better) Translates to: SDARVGVPILQAEDGGRNASSWF*ASCFRT Trigger: AGTACGGAAACAGGAAGCCAAGAACCAGGAACTGGC...ATTCCTGCCGCCATCTTCTGCCTGCAGGATTGGGACTCCCACCCTGGCATCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS CCA 90 bp | GACACTACACAGGTCTTTCTCTGGGATTCCACTGGGTCGCCAGGCTaGCTCTCCGCGCTCTCTGCCTTCTTCTATGATCTTATCCAGGGA | + |
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Preference number: 5 (lower is better) Translates to: DTTQVFLWDSTGSPG*LSALSAFFYDLIQG Trigger: TCCCTGGATAAGATCATAGAAGAAGGCAGAGAGCGCGGAGAGCCAGCCTGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS-3UTR CAA 90 bp | TCTGAAGGCAGTGTGACCCCAGCAGAACCTAAGCGGTGGTGGGGACTCCATTACACACAGGGTATCCTGTaGCTTCAGGAAGTAGGGTGC | + |
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Preference number: 5 (lower is better) Translates to: SEGSVTPAEPKRWWGLHYTQGIL*LQEVGC Trigger: GCACCCTACTTCCTGAAGCAACAGGATACCCTGTGT...GTAATGGAGTCCCCACCACCGCTTAGGTTCTGCTGGGGTCACACTGCCTTCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS TCA 90 bp | CTTGATGACACAGGGTATCCTGTTGCTTCAGGAAGTAGGGTGCCATaGCACTACACAGGTCTTTCTCTGGGATTCCACTGGGTCGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LDDTGYPVASGSRVP*HYTGLSLGFHWVAR Trigger: CCTGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGTGTCATCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS TCA 90 bp | CTTGATGACACAGGGTATCCTGTTGCTTCAGGAAGTAGGGTGCCATaGCACTACACAGGTCTTTCTCTGGGATTCCACTGGGTCGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LDDTGYPVASGSRVP*HYTGLSLGFHWVAS Trigger: GGAGGCGACCCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGTGTCATCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000193338.6 |
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| CDS GCA 90 bp | CCGTACTTGATGACACAGGGTATCCTGTTGCTTCAGGAAGTAGGGTaGCATGACACTACACAGGTCTTTCTCTGGGATTCCACTGGGTCG | + |
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Preference number: 5 (lower is better) Translates to: PYLMTQGILLLQEVG*HDTTQVFLWDSTGS Trigger: CGACCCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGTGTCATCAAGTACGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS TCA 90 bp | TCTTATCCAGGGAGTTCAGGACAGCTTCTAGGTTCCCCTCCTCTTTaGTTTCTGAGATTTCCTCGCGGATGGATGTCTGCAACTGAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SYPGSSGQLLGSPPL*FLRFPRGWMSATEP Trigger: TGGCTCAGTTGCAGACATCCATCCGCGAGGAAATCTCAGAAATCAAAGAGGAGGGGAACCTAGAAGCTGTCCTGAACTCCCTGGATAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS TCA 72 bp | GGGAGTTCAGGACAGCTTCTAGGTTCCCCTCCTCTTTaGTTTCTGAGATTTCCTCGCGGATGGATGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: GSSGQLLGSPPL*FLRFPRGWMSA Trigger: TGCAGACATCCATCCGCGAGGAAATCTCAGAAATCAAAGAGGAGGGGAACCTAGAAGCTGTCCTGAACTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056370.13 |
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| CDS TCA 72 bp | ACAGGGTATCCTGTTGCTTCAGGAAGTAGGGTGCCATaGCACTACACAGGTCTTTCTCTGGGATTCCACTGG | + |
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Preference number: 6 (lower is better) Translates to: TGYPVASGSRVP*HYTGLSLGFHW Trigger: CCAGTGGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS GCA 72 bp | ATGACACAGGGTATCCTGTTGCTTCAGGAAGTAGGGTaGCATGACACTACACAGGTCTTTCTCTGGGATTCC | + |
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Preference number: 6 (lower is better) Translates to: MTQGILLLQEVG*HDTTQVFLWDS Trigger: GGAATCCCAGAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGTGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS CAA 72 bp | GGCCAGTTCCTGGTTCTTGGCTTCCTGTTTCCGTACTaGATGACACAGGGTATCCTGTTGCTTCAGGAAGTA | + |
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Preference number: 6 (lower is better) Translates to: GQFLVLGFLFPY*MTQGILLLQEV Trigger: TACTTCCTGAAGCAACAGGATACCCTGTGTCATCAAGTACGGAAACAGGAAGCCAAGAACCAGGAACTGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS CAA 90 bp | GTTCTTGGCTTCCTGTTTCCGTACTTGATGACACAGGGTATCCTGTaGCTTCAGGAAGTAGGGTGCCATGACACTACACAGGTCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: VLGFLFPYLMTQGIL*LQEVGCHDTTQVFL Trigger: GAGAAAGACCTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGTGTCATCAAGTACGGAAACAGGAAGCCAAGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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| CDS CAA 72 bp | TTCCTGTTTCCGTACTTGATGACACAGGGTATCCTGTaGCTTCAGGAAGTAGGGTGCCATGACACTACACAG | + |
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Preference number: 6 (lower is better) Translates to: FLFPYLMTQGIL*LQEVGCHDTTQ Trigger: CTGTGTAGTGTCATGGCACCCTACTTCCTGAAGCAACAGGATACCCTGTGTCATCAAGTACGGAAACAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000056370.13 ENSMUST00000193338.6 |
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