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Pregenerated sensors for PMCH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035383

Ensembl transcript IDs: ENSMUST00000048621.8

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TGCAGAACTTTTGTGAGGTTTAATGCACACGTCAAGCATATCGCTTACATTATTTCTCCCCGCTTGCAATaGATTGTTTTCTTCTGTAAG +
Preference number: 2 (lower is better)
Translates to: CRTFVRFNAHVKHIAYIISPRLQ*IVFFCK
Trigger: CTTACAGAAGAAAACAATTCATTGCAAGCGGGGAGA...AATAATGTAAGCGATATGCTTGACGTGTGCATTAAACCTCACAAAAGTTCTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR TCA 90 bp AACAGACATTTACATAATGCACAAGTTATAGCAACATCAAGGGCTTTTCTCCCCGTGGACTCAGCATTCTaGACTCCATTCTCAGCTGGG +
Preference number: 4 (lower is better)
Translates to: NRHLHNAQVIATSRAFLPVDSAF*TPFSAG
Trigger: CCCAGCTGAGAATGGAGTTCAGAATGCTGAGTCCAC...GGGGAGAAAAGCCCTTGATGTTGCTATAACTTGTGCATTATGTAAATGTCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR TCA 90 bp AACAGACATTTACATAATGCACAAGTTATAGCAACATCAAGGGCTTTTCTCCCCTTCCCAGCATACACCTaGGCATGTCAAAATCTCTCC +
Preference number: 4 (lower is better)
Translates to: NRHLHNAQVIATSRAFLPFPAYT*ACQNLS
Trigger: GGAGAGATTTTGACATGCTCAGGTGTATGCTGGGAA...GGGGAGAAAAGCCCTTGATGTTGCTATAACTTGTGCATTATGTAAATGTCTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR TCA 90 bp TGCAGAACTTTTGTGAGGTTTAATGCACACGTCAAGCATATCGCTTACATTATTGCAGTATCTTCCTTCTaGAAGGCTTTCCCCATTCGA +
Preference number: 4 (lower is better)
Translates to: CRTFVRFNAHVKHIAYIIAVSSF*KAFPIR
Trigger: TCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGC...AATAATGTAAGCGATATGCTTGACGTGTGCATTAAACCTCACAAAAGTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR CCA 90 bp TGCAGAACTTTTGTGAGGTTTAATGCACACGTCAAGCATATCGCTTACATTATTCTCTCTTTTCCTGTGTaGACTCAGCATTCTGAACTC +
Preference number: 4 (lower is better)
Translates to: CRTFVRFNAHVKHIAYIILSFPV*TQHSEL
Trigger: GAGTTCAGAATGCTGAGTCCACACAGGAAAAGAGAG...AATAATGTAAGCGATATGCTTGACGTGTGCATTAAACCTCACAAAAGTTCTGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR TCA 90 bp TGCAGAACTTTTGTGAGGTTTAATGCACACGTCAAGCATATCGCTTACATTATTGGAGCCTGTGTTCTTTaGATTCTTATTGTCATCATC +
Preference number: 4 (lower is better)
Translates to: CRTFVRFNAHVKHIAYIIGACVL*ILIVII
Trigger: GATGATGACAATAAGAATTCAAAGAACACAGGCTCC...AATAATGTAAGCGATATGCTTGACGTGTGCATTAAACCTCACAAAAGTTCTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR GCA 90 bp TGCAGAACTTTTGTGAGGTTTAATGCACACGTCAAGCATATCGCTTACATTATTGACAACGGATCTTTCTaGAGTATCTTCCTTCTGAAA +
Preference number: 4 (lower is better)
Translates to: CRTFVRFNAHVKHIAYIIDNGSF*SIFLLK
Trigger: TTTCAGAAGGAAGATACTGCAGAAAGATCCGTTGTC...AATAATGTAAGCGATATGCTTGACGTGTGCATTAAACCTCACAAAAGTTCTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR CCA 90 bp AACAGACATTTACATAATGCACAAGTTATAGCAACATCAAGGGCTTTTCTCCCCTTACAAGATTCTGTTTaGAGCCTGTGTTCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: NRHLHNAQVIATSRAFLPLQDSV*SLCSLN
Trigger: ATTCAAAGAACACAGGCTCCAAACAGAATCTTGTAA...GGGGAGAAAAGCCCTTGATGTTGCTATAACTTGTGCATTATGTAAATGTCTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS CCA 90 bp TACGGATCCTTTCAGAGCGAGGTAAGGTTTTACAGCCAGACTCAGTaGCAGCCCGTGAGTTACAAGATTCTGTTTGGAGCCTGTGTTCTT +
Preference number: 5 (lower is better)
Translates to: YGSFQSEVRFYSQTQ*QPVSYKILFGACVL
Trigger: AAGAACACAGGCTCCAAACAGAATCTTGTAACTCACGGGCTGCCACTGAGTCTGGCTGTAAAACCTTACCTCGCTCTGAAAGGATCCGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS TCA 90 bp GTTTGGAGCCTGTGTTCTTTGAATTCTTATTGTCATCATCGTTCATaGAACCGCTCTCGTCGTTTTTGTATTGTTCCAGAGAAGGGGCGA +
Preference number: 5 (lower is better)
Translates to: VWSLCSLNSYCHHRS*NRSRRFCIVPEKGR
Trigger: TCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGGTTTCATGAACGATGATGACAATAAGAATTCAAAGAACACAGGCTCCAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR CAA 90 bp AACAGACATTTACATAATGCACAAGTTATAGCAACATCAAGGGCTTTTCTCCCCCCGCTCTCGTCGTTTTaGTATTGTTCCAGAGAAGGG +
Preference number: 5 (lower is better)
Translates to: NRHLHNAQVIATSRAFLPPLSSF*YCSREG
Trigger: CCCTTCTCTGGAACAATACAAAAACGACGAGAGCGG...GGGGAGAAAAGCCCTTGATGTTGCTATAACTTGTGCATTATGTAAATGTCTGTT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS TCA 90 bp TCCAGAGAAGGGGCGACAACGGATCTTTCTGCAGTATCTTCCTTCTaGAAGGCTTTCCCCATTCGAAATGTATTAAATACTATGTCATCT +
Preference number: 5 (lower is better)
Translates to: SREGATTDLSAVSSF*KAFPIRNVLNTMSS
Trigger: AGATGACATAGTATTTAATACATTTCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGCAGAAAGATCCGTTGTCGCCCCTTCTCTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR CAA 90 bp AACAGACATTTACATAATGCACAAGTTATAGCAACATCAAGGGCTTTTCTCCCCGTTACAAGATTCTGTTaGGAGCCTGTGTTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: NRHLHNAQVIATSRAFLPVTRFC*EPVFFE
Trigger: TTCAAAGAACACAGGCTCCAAACAGAATCTTGTAAC...GGGGAGAAAAGCCCTTGATGTTGCTATAACTTGTGCATTATGTAAATGTCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS-3UTR CAA 90 bp TGCAGAACTTTTGTGAGGTTTAATGCACACGTCAAGCATATCGCTTACATTATTTGGAGCCTGTGTTCTTaGAATTCTTATTGTCATCAT +
Preference number: 5 (lower is better)
Translates to: CRTFVRFNAHVKHIAYIIWSLCS*NSYCHH
Trigger: ATGATGACAATAAGAATTCAAAGAACACAGGCTCCA...AATAATGTAAGCGATATGCTTGACGTGTGCATTAAACCTCACAAAAGTTCTGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS CCA 72 bp TTTCAGAGCGAGGTAAGGTTTTACAGCCAGACTCAGTaGCAGCCCGTGAGTTACAAGATTCTGTTTGGAGCC +
Preference number: 6 (lower is better)
Translates to: FQSEVRFYSQTQ*QPVSYKILFGA
Trigger: GGCTCCAAACAGAATCTTGTAACTCACGGGCTGCCACTGAGTCTGGCTGTAAAACCTTACCTCGCTCTGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS CAA 72 bp ATCATCGTTCATGAAACCGCTCTCGTCGTTTTTGTATaGTTCCAGAGAAGGGGCGACAACGGATCTTTCTGC +
Preference number: 6 (lower is better)
Translates to: IIVHETALVVFV*FQRRGDNGSFC
Trigger: GCAGAAAGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGGTTTCATGAACGATGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS CAA 72 bp TTGTCATCATCGTTCATGAAACCGCTCTCGTCGTTTTaGTATTGTTCCAGAGAAGGGGCGACAACGGATCTT +
Preference number: 6 (lower is better)
Translates to: LSSSFMKPLSSF*YCSREGATTDL
Trigger: AAGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGGTTTCATGAACGATGATGACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS CAA 90 bp CTTATTGTCATCATCGTTCATGAAACCGCTCTCGTCGTTTTTGTATaGTTCCAGAGAAGGGGCGACAACGGATCTTTCTGCAGTATCTTC +
Preference number: 6 (lower is better)
Translates to: LIVIIVHETALVVFV*FQRRGDNGSFCSIF
Trigger: GAAGATACTGCAGAAAGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGGTTTCATGAACGATGATGACAATAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS CAA 90 bp GAATTCTTATTGTCATCATCGTTCATGAAACCGCTCTCGTCGTTTTaGTATTGTTCCAGAGAAGGGGCGACAACGGATCTTTCTGCAGTA +
Preference number: 6 (lower is better)
Translates to: EFLLSSSFMKPLSSF*YCSREGATTDLSAV
Trigger: TACTGCAGAAAGATCCGTTGTCGCCCCTTCTCTGGAACAATACAAAAACGACGAGAGCGGTTTCATGAACGATGATGACAATAAGAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS TCA 72 bp GGGGCGACAACGGATCTTTCTGCAGTATCTTCCTTCTaGAAGGCTTTCCCCATTCGAAATGTATTAAATACT +
Preference number: 6 (lower is better)
Translates to: GATTDLSAVSSF*KAFPIRNVLNT
Trigger: AGTATTTAATACATTTCGAATGGGGAAAGCCTTTCAGAAGGAAGATACTGCAGAAAGATCCGTTGTCGCCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8
CDS TCA 72 bp CTGTGTTCTTTGAATTCTTATTGTCATCATCGTTCATaGAACCGCTCTCGTCGTTTTTGTATTGTTCCAGAG +
Preference number: 6 (lower is better)
Translates to: LCSLNSYCHHRS*NRSRRFCIVPE
Trigger: CTCTGGAACAATACAAAAACGACGAGAGCGGTTTCATGAACGATGATGACAATAAGAATTCAAAGAACACAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048621.8