Pregenerated sensors for PM20D2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054659

Ensembl transcript IDs: ENSMUST00000098181.9, ENSMUST00000119167.2

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GCGCAGCCCGCAGGCCGAGCGCCGCAGCCACCCCGACCTCGGCGATaGGGTTGTGGCCGCAGGCGTGGCCCAGGGCTGGCAGCGCGTCGT	+
Preference number: 5 (lower is better) Translates to: AQPAGRAPQPPRPRR*GCGRRRGPGLAARR Trigger: ACGACGCGCTGCCAGCCCTGGGCCACGCCTGCGGCCACAACCTCATCGCCGAGGTCGGGGTGGCTGCGGCGCTCGGCCTGCGGGCTGCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 90 bp	TCCGGCGGCGCCCACTCGGCACGGAAGGCGGTGGGGAGCCCGAAGTaGGGCTGCACCGCCCACGAGGCGGCCGGCGGCTCGCACTCGAAG	+
Preference number: 5 (lower is better) Translates to: SGGAHSARKAVGSPK*GCTAHEAAGGSHSK Trigger: CTTCGAGTGCGAGCCGCCGGCCGCCTCGTGGGCGGTGCAGCCGCACTTCGGGCTCCCCACCGCCTTCCGTGCCGAGTGGGCGCCGCCGGA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 90 bp	AGATGGCGCGGCTCAGCGCGCCCAGGCGCTCGGCCGCCTCGTCGATaGGCTCGGCCGCTCGCCGTTTCAGCAGCTCCAGCTCGGCGGCGC	+
Preference number: 5 (lower is better) Translates to: RWRGSARPGARPPRR*ARPLAVSAAPARRR Trigger: GCGCCGCCGAGCTGGAGCTGCTGAAACGGCGAGCGGCCGAGCGCATCGACGAGGCGGCCGAGCGCCTGGGCGCGCTGAGCCGCGCCATCT 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CCA 90 bp	CGTGCGCGCGGTGCTCTTCGTAGGCCAGCTCGGGCGCGCTCCAGATaGCGCGGCTCAGCGCGCCCAGGCGCTCGGCCGCCTCGTCGATGC	+
Preference number: 5 (lower is better) Translates to: RARGALRRPARARSR*RGSARPGARPPRRC Trigger: GCATCGACGAGGCGGCCGAGCGCCTGGGCGCGCTGAGCCGCGCCATCTGGAGCGCGCCCGAGCTGGCCTACGAAGAGCACCGCGCGCACG 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 90 bp	GCACCGCCCACGAGGCGGCCGGCGGCTCGCACTCGAAGAAGCGCGTaGGCTCGCCGTGCGCGCGGTGCTCTTCGTAGGCCAGCTCGGGCG	+
Preference number: 5 (lower is better) Translates to: APPTRRPAARTRRSA*ARRARGALRRPARA Trigger: CGCCCGAGCTGGCCTACGAAGAGCACCGCGCGCACGGCGAGCTCACGCGCTTCTTCGAGTGCGAGCCGCCGGCCGCCTCGTGGGCGGTGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CCA 90 bp	CGCAGGCCGAGCGCCGCAGCCACCCCGACCTCGGCGATGAGGTTGTaGCCGCAGGCGTGGCCCAGGGCTGGCAGCGCGTCGTACTCGCAC	+
Preference number: 5 (lower is better) Translates to: RRPSAAATPTSAMRL*PQAWPRAGSASYSH Trigger: GTGCGAGTACGACGCGCTGCCAGCCCTGGGCCACGCCTGCGGCCACAACCTCATCGCCGAGGTCGGGGTGGCTGCGGCGCTCGGCCTGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 90 bp	TGCCACCACCATCTTCTTCTGCAGGGGTTCCCAGGACAATCACCTTaGCCGGCGGCGGCGCAGCGATGCTCTCCAGCGCAGCCCGCAGGC	+
Preference number: 5 (lower is better) Translates to: CHHHLLLQGFPGQSP*PAAAQRCSPAQPAG Trigger: GCCTGCGGGCTGCGCTGGAGAGCATCGCTGCGCCGCCGCCGGTCAAGGTGATTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 90 bp	TGCCAGAGCCTTGGCTGTACGCAGCGTGTACAGCTGAGCCGCTTGTaGTCCTGCAGCTTCTGTGTACTGCTCCGTGTGATTCAAGGCATC	+
Preference number: 5 (lower is better) Translates to: CQSLGCTQRVQLSRL*SCSFCVLLRVIQGI Trigger: GATGCCTTGAATCACACGGAGCAGTACACAGAAGCTGCAGGATCACAAGCGGCTCAGCTGTACACGCTGCGTACAGCCAAGGCTCTGGCA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS GCA 90 bp	CTTCCTGACTCCTTCGAGCAATGCAGGCTTAAAGATGACGTCCAGTaGGGTCATTGCCAGAGCCTTGGCTGTACGCAGCGTGTACAGCTG	+
Preference number: 5 (lower is better) Translates to: LPDSFEQCRLKDDVQ*GHCQSLGCTQRVQL Trigger: CAGCTGTACACGCTGCGTACAGCCAAGGCTCTGGCAATGACCGCACTGGACGTCATCTTTAAGCCTGCATTGCTCGAAGGAGTCAGGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS GCA 90 bp	TACTGTGCAGCCCGTAGCCAAAGCCGCAGCTCTGAAGCAATCTTCTaGCTTTTTGGTCAGAACTTGAAGCTCCTTCATGGAGGGCGCACG	+
Preference number: 5 (lower is better) Translates to: YCAARSQSRSSEAIF*LFGQNLKLLHGGRT Trigger: CGTGCGCCCTCCATGAAGGAGCTTCAAGTTCTGACCAAAAAGGCAGAAGATTGCTTCAGAGCTGCGGCTTTGGCTACGGGCTGCACAGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 90 bp	TTCTTGAAGTTTACATTTAAACTCCTTCCTGACTCCTTCGAGCAATaGAGGCTTAAAGATGACGTCCAGTGCGGTCATTGCCAGAGCCTT	+
Preference number: 5 (lower is better) Translates to: FLKFTFKLLPDSFEQ*RLKDDVQCGHCQSL Trigger: AAGGCTCTGGCAATGACCGCACTGGACGTCATCTTTAAGCCTGCATTGCTCGAAGGAGTCAGGAAGGAGTTTAAATGTAAACTTCAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS TCA 90 bp	TCTTCCCGTTCTCCGTATACGCACTGCACAGGGTCTTATTGGGAATaGCATTGTAATAATCATGTGCTTCACTTTCAATGTCTACTGTGC	+
Preference number: 5 (lower is better) Translates to: SSRSPYTHCTGSYWE*HCNNHVLHFQCLLC Trigger: GCACAGTAGACATTGAAAGTGAAGCACATGATTATTACAATGTCATTCCCAATAAGACCCTGTGCAGTGCGTATACGGAGAACGGGAAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS GCA 72 bp	GCCCACTCGGCACGGAAGGCGGTGGGGAGCCCGAAGTaGGGCTGCACCGCCCACGAGGCGGCCGGCGGCTCG	+
Preference number: 6 (lower is better) Translates to: AHSARKAVGSPK*GCTAHEAAGGS Trigger: CGAGCCGCCGGCCGCCTCGTGGGCGGTGCAGCCGCACTTCGGGCTCCCCACCGCCTTCCGTGCCGAGTGGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 72 bp	CCGCTCGCCGTTTCAGCAGCTCCAGCTCGGCGGCGCTaGTCGTGCCGGGCTCGGCCGGCCGCTCCACCACCG	+
Preference number: 6 (lower is better) Translates to: PLAVSAAPARRR*SCRARPAAPPP Trigger: CGGTGGTGGAGCGGCCGGCCGAGCCCGGCACGAGCAGCGCCGCCGAGCTGGAGCTGCTGAAACGGCGAGCGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 72 bp	GCAGGCCGAGCGCCGCAGCCACCCCGACCTCGGCGATaGGGTTGTGGCCGCAGGCGTGGCCCAGGGCTGGCA	+
Preference number: 6 (lower is better) Translates to: AGRAPQPPRPRR*GCGRRRGPGLA Trigger: TGCCAGCCCTGGGCCACGCCTGCGGCCACAACCTCATCGCCGAGGTCGGGGTGGCTGCGGCGCTCGGCCTGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 72 bp	GCCGTTTCAGCAGCTCCAGCTCGGCGGCGCTGCTCGTaGCGGGCTCGGCCGGCCGCTCCACCACCGGACCCA	+
Preference number: 6 (lower is better) Translates to: AVSAAPARRRCS*RARPAAPPPDP Trigger: TGGGTCCGGTGGTGGAGCGGCCGGCCGAGCCCGGCACGAGCAGCGCCGCCGAGCTGGAGCTGCTGAAACGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CCA 72 bp	GGTGCTCTTCGTAGGCCAGCTCGGGCGCGCTCCAGATaGCGCGGCTCAGCGCGCCCAGGCGCTCGGCCGCCT	+
Preference number: 6 (lower is better) Translates to: GALRRPARARSR*RGSARPGARPP Trigger: AGGCGGCCGAGCGCCTGGGCGCGCTGAGCCGCGCCATCTGGAGCGCGCCCGAGCTGGCCTACGAAGAGCACC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 72 bp	GGCTCAGCGCGCCCAGGCGCTCGGCCGCCTCGTCGATaGGCTCGGCCGCTCGCCGTTTCAGCAGCTCCAGCT	+
Preference number: 6 (lower is better) Translates to: GSARPGARPPRR*ARPLAVSAAPA Trigger: AGCTGGAGCTGCTGAAACGGCGAGCGGCCGAGCGCATCGACGAGGCGGCCGAGCGCCTGGGCGCGCTGAGCC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CAA 90 bp	TTGCCACCACCATCTTCTTCTGCAGGGGTTCCCAGGACAATCACCTaGACCGGCGGCGGCGCAGCGATGCTCTCCAGCGCAGCCCGCAGG	+
Preference number: 6 (lower is better) Translates to: LPPPSSSAGVPRTIT*TGGGAAMLSSAARR Trigger: CCTGCGGGCTGCGCTGGAGAGCATCGCTGCGCCGCCGCCGGTCAAGGTGATTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 72 bp	CATCTTCTTCTGCAGGGGTTCCCAGGACAATCACCTTaGCCGGCGGCGGCGCAGCGATGCTCTCCAGCGCAG	+
Preference number: 6 (lower is better) Translates to: HLLLQGFPGQSP*PAAAQRCSPAQ Trigger: CTGCGCTGGAGAGCATCGCTGCGCCGCCGCCGGTCAAGGTGATTGTCCTGGGAACCCCTGCAGAAGAAGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CAA 72 bp	CCATCTTCTTCTGCAGGGGTTCCCAGGACAATCACCTaGACCGGCGGCGGCGCAGCGATGCTCTCCAGCGCA	+
Preference number: 6 (lower is better) Translates to: PSSSAGVPRTIT*TGGGAAMLSSA Trigger: TGCGCTGGAGAGCATCGCTGCGCCGCCGCCGGTCAAGGTGATTGTCCTGGGAACCCCTGCAGAAGAAGATGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 72 bp	ATTGCCAGAGCCTTGGCTGTACGCAGCGTGTACAGCTaGGCCGCTTGTGATCCTGCAGCTTCTGTGTACTGC	+
Preference number: 6 (lower is better) Translates to: IARALAVRSVYS*AACDPAASVYC Trigger: GCAGTACACAGAAGCTGCAGGATCACAAGCGGCTCAGCTGTACACGCTGCGTACAGCCAAGGCTCTGGCAAT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS GCA 72 bp	TCCTTCGAGCAATGCAGGCTTAAAGATGACGTCCAGTaGGGTCATTGCCAGAGCCTTGGCTGTACGCAGCGT	+
Preference number: 6 (lower is better) Translates to: SFEQCRLKDDVQ*GHCQSLGCTQR Trigger: ACGCTGCGTACAGCCAAGGCTCTGGCAATGACCGCACTGGACGTCATCTTTAAGCCTGCATTGCTCGAAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS GCA 72 bp	GCCCGTAGCCAAAGCCGCAGCTCTGAAGCAATCTTCTaGCTTTTTGGTCAGAACTTGAAGCTCCTTCATGGA	+
Preference number: 6 (lower is better) Translates to: ARSQSRSSEAIF*LFGQNLKLLHG Trigger: TCCATGAAGGAGCTTCAAGTTCTGACCAAAAAGGCAGAAGATTGCTTCAGAGCTGCGGCTTTGGCTACGGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CAA 90 bp	CAAAGCCGCAGCTCTGAAGCAATCTTCTGCCTTTTTGGTCAGAACTaGAAGCTCCTTCATGGAGGGCGCACGGAAGTAATAGACGAGTTC	+
Preference number: 6 (lower is better) Translates to: QSRSSEAIFCLFGQN*KLLHGGRTEVIDEF Trigger: GAACTCGTCTATTACTTCCGTGCGCCCTCCATGAAGGAGCTTCAAGTTCTGACCAAAAAGGCAGAAGATTGCTTCAGAGCTGCGGCTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS TCA 72 bp	AGCCTGAAGGGCCATTCAGTACCGCATCTTCTGAAATaGACTCCATTCCCAGTTTCTTCCCGTTCTCCGTAT	+
Preference number: 6 (lower is better) Translates to: SLKGHSVPHLLK*TPFPVSSRSPY Trigger: ATACGGAGAACGGGAAGAAACTGGGAATGGAGTTCATTTCAGAAGATGCGGTACTGAATGGCCCTTCAGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS CCA 72 bp	CTTCTGCCTTTTTGGTCAGAACTTGAAGCTCCTTCATaGAGGGCGCACGGAAGTAATAGACGAGTTCAGAGT	+
Preference number: 6 (lower is better) Translates to: LLPFWSELEAPS*RAHGSNRRVQS Trigger: ACTCTGAACTCGTCTATTACTTCCGTGCGCCCTCCATGAAGGAGCTTCAAGTTCTGACCAAAAAGGCAGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CAA 72 bp	AGGTTTTCGAAGGCACCTGCTTCAATTAGATCAATTTaGCCACCACCATCTTCTTCTGCAGGGGTTCCCAGG	+
Preference number: 6 (lower is better) Translates to: RFSKAPASIRSI*PPPSSSAGVPR Trigger: CCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATCTAATTGAAGCAGGTGCCTTCGAAAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CAA 90 bp	ACAACATCAAGGTTTTCGAAGGCACCTGCTTCAATTAGATCAATTTaGCCACCACCATCTTCTTCTGCAGGGGTTCCCAGGACAATCACC	+
Preference number: 6 (lower is better) Translates to: TTSRFSKAPASIRSI*PPPSSSAGVPRTIT Trigger: GGTGATTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATCTAATTGAAGCAGGTGCCTTCGAAAACCTTGATGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS CAA 72 bp	AGCTCTGAAGCAATCTTCTGCCTTTTTGGTCAGAACTaGAAGCTCCTTCATGGAGGGCGCACGGAAGTAATA	+
Preference number: 6 (lower is better) Translates to: SSEAIFCLFGQN*KLLHGGRTEVI Trigger: TATTACTTCCGTGCGCCCTCCATGAAGGAGCTTCAAGTTCTGACCAAAAAGGCAGAAGATTGCTTCAGAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098181.9 ENSMUST00000119167.2
CDS GCA 72 bp	TTTACATTTAAACTCCTTCCTGACTCCTTCGAGCAATaGAGGCTTAAAGATGACGTCCAGTGCGGTCATTGC	+
Preference number: 6 (lower is better) Translates to: FTFKLLPDSFEQ*RLKDDVQCGHC Trigger: GCAATGACCGCACTGGACGTCATCTTTAAGCCTGCATTGCTCGAAGGAGTCAGGAAGGAGTTTAAATGTAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9
CDS TCA 72 bp	TCTCCGTATACGCACTGCACAGGGTCTTATTGGGAATaGCATTGTAATAATCATGTGCTTCACTTTCAATGT	+
Preference number: 6 (lower is better) Translates to: SPYTHCTGSYWE*HCNNHVLHFQC Trigger: ACATTGAAAGTGAAGCACATGATTATTACAATGTCATTCCCAATAAGACCCTGTGCAGTGCGTATACGGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000098181.9

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