RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLXNC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000074785

Ensembl transcript IDs: ENSMUST00000099337.5, ENSMUST00000181244.2

Found 368 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGAAAACTGCTGTTGCATTTCAGTGAGACCCACCCACTCTCCTTaGTTTAGAGCTGCGTTGATGAGATGGAGGTGGGCTGAGGAGCCC +
Preference number: 1 (lower is better)
Translates to: WENCCCISVRPTHSP*FRAALMRWRWAEEP
Trigger: GGGCTCCTCAGCCCACCTCCATCTCATCAACGCAGCTCTAAAGCAAGGAGAGTGGGTGGGTCTCACTGAAATGCAACAGCAGTTTTCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 90 bp CTTCTCCACAGCAACTTGACAGAGCTCCTGATTCCTCTCATAGTCTaGTGGTTCGCAGGGGGTGAAGGGGTGGATGCATTTCTTGTCCCG +
Preference number: 1 (lower is better)
Translates to: LLHSNLTELLIPLIV*WFAGGEGVDAFLVP
Trigger: CGGGACAAGAAATGCATCCACCCCTTCACCCCCTGCGAACCATCAGACTATGAGAGGAATCAGGAGCTCTGTCAAGTTGCTGTGGAGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR CCA 90 bp GGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGCTGTaGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTG +
Preference number: 1 (lower is better)
Translates to: GQGPPGVAFVTQLKL*LSLCVSVPQRREGL
Trigger: CAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 90 bp AAGGCTCACACAGGACTCATGTCAGAGAGCTGGACAGGGACCCCCTaGTGTAGCATTTGTAACACAGCTAAAGCTGTGGCTCAGCCTTTG +
Preference number: 1 (lower is better)
Translates to: KAHTGLMSESWTGTP*CSICNTAKAVAQPL
Trigger: CAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACATGAGTCCTGTGTGAGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 90 bp CCTGAAAGAGGCGGTAAGGCTCACACAGGACTCATGTCAGAGAGCTaGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGCT +
Preference number: 1 (lower is better)
Translates to: PERGGKAHTGLMSES*TGTPWCSICNTAKA
Trigger: AGCTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACATGAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 90 bp TTTAGAGCTGCGTTGATGAGATGGAGGTGGGCTGAGGAGCCCGGCTaGCAACCACTGAAAAACACGAGCCCTTTCAACAATGTTGCAACA +
Preference number: 1 (lower is better)
Translates to: FRAALMRWRWAEEPG*QPLKNTSPFNNVAT
Trigger: TGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGTGGTTGCCAGCCGGGCTCCTCAGCCCACCTCCATCTCATCAACGCAGCTCTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 90 bp AGTCACAAGAAACAAGATTGGGAGGGCGTCTGTCAGGGCAGCCACTaGACTGTTGAGGTGTCAGATAGTAAGGAAGAGAAAGGACTGCCA +
Preference number: 1 (lower is better)
Translates to: SHKKQDWEGVCQGSH*TVEVSDSKEEKGLP
Trigger: TGGCAGTCCTTTCTCTTCCTTACTATCTGACACCTCAACAGTGCAGTGGCTGCCCTGACAGACGCCCTCCCAATCTTGTTTCTTGTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 90 bp TTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTaGGAGGGCGTCTGTCAGGGCAGCCACTGCACTGTTGAGGTGTCA +
Preference number: 1 (lower is better)
Translates to: LRCVHWTDSSHKKQD*EGVCQGSHCTVEVS
Trigger: TGACACCTCAACAGTGCAGTGGCTGCCCTGACAGACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 90 bp ACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGATGTCCTaGACAGCCCCGTCAGTTCTGTTTCTCTTGCTCTCCTTGACTCTT +
Preference number: 1 (lower is better)
Translates to: TSDPGSNPVCCFWMS*TAPSVLFLLLSLTL
Trigger: AAGAGTCAAGGAGAGCAAGAGAAACAGAACTGACGGGGCTGTGCAGGACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR GCA 90 bp CCTGGTGTAGCATTTGTAACACAGCTAAAGCTGTGGCTCAGCCTTTaGGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCT +
Preference number: 1 (lower is better)
Translates to: PGVAFVTQLKLWLSL*VSVPQRREGLLGNS
Trigger: AGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGCTACACCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 90 bp AAGGGTAGGGGTGCCTGCCACAAGGTAAGTGAGAGGGCCGTCAGGTaGCACTTTTTACTTCTGTTTAATAGAAGGAAAGCACAGTGGTAT +
Preference number: 1 (lower is better)
Translates to: KGRGACHKVSERAVR*HFLLLFNRRKAQWY
Trigger: ATACCACTGTGCTTTCCTTCTATTAAACAGAAGTAAAAAGTGTCACCTGACGGCCCTCTCACTTACCTTGTGGCAGGCACCCCTACCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 90 bp AGCTCTATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTaGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCC +
Preference number: 1 (lower is better)
Translates to: SSIYRKVPTIYPQAQ*LITLSKSCACALVS
Trigger: GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 90 bp AAACACACACACTCACGAATGCTAAGTGTACACACTACCAAATTCTaGCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGC +
Preference number: 1 (lower is better)
Translates to: KHTHSRMLSVHTTKF*LQPFQELLGKEEEC
Trigger: GCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAATTTGGTAGTGTGTACACTTAGCATTCGTGAGTGTGTGTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 90 bp CACTTGCTTACTGGCCCTGTATTCTCTGTAAACAAGGAGGCTGTTTaGAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATA +
Preference number: 1 (lower is better)
Translates to: HLLTGPVFSVNKEAV*NNHFSSIYRKVPTI
Trigger: TATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACAGAGAATACAGGGCCAGTAAGCAAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 90 bp TACTTAGAAATAGACTATTTGGTAGTAGTTTTGAGATGTGTCCATTaGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCTGT +
Preference number: 1 (lower is better)
Translates to: YLEIDYLVVVLRCVH*TDSSHKKQDWEGVC
Trigger: ACAGACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAAATAGTCTATTTCTAAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp TGCATTTCAGTGAGACCCACCCACTCTCCTTGCTTTAGAGCTGCGTaGATGAGATGGAGGTGGGCTGAGGAGCCCGGCTGGCAACCACTG +
Preference number: 2 (lower is better)
Translates to: CISVRPTHSPCFRAA*MRWRWAEEPGWQPL
Trigger: CAGTGGTTGCCAGCCGGGCTCCTCAGCCCACCTCCATCTCATCAACGCAGCTCTAAAGCAAGGAGAGTGGGTGGGTCTCACTGAAATGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp CTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTaGTTGGGCAATTCTCCTACCCTTGGCTCTCAAGTCTCCTCCAAC +
Preference number: 2 (lower is better)
Translates to: LWLSLCVSVPQRREG*LGNSPTLGSQVSSN
Trigger: GTTGGAGGAGACTTGAGAGCCAAGGGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp GGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTaGGATGTCCTGCACAGCCCCGTCAGTTCTGTTTCTCTTGCTCTC +
Preference number: 2 (lower is better)
Translates to: GLGNFRPRVKSCLLF*DVLHSPVSSVSLAL
Trigger: GAGAGCAAGAGAAACAGAACTGACGGGGCTGTGCAGGACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR-3UTR TCA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCGCTGTTGCATTTCAGTaGGACCCACCCACTCTCCTT +
Preference number: 2 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLAVAFQ*DPPTLL
Trigger: AAGGAGAGTGGGTGGGTCTCACTGAAATGCAACAGC...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR TCA 90 bp GGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGATGTCATGGTTCGCAGGGGGTaGAGGGGTGGATGCATTTCT +
Preference number: 2 (lower is better)
Translates to: GLGNFRPRVKSCLLFLDVMVRRG*RGGCIS
Trigger: AGAAATGCATCCACCCCTTCACCCCCTGCGAACCAT...GACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR-3UTR GCA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCCCCACCCACTCTCCTTaGTTTAGAGCTGCGTTGATG +
Preference number: 2 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTPTHSP*FRAALM
Trigger: CATCAACGCAGCTCTAAAGCAAGGAGAGTGGGTGGG...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp AGAAACAAGATTGGGAGGGCGTCTGTCAGGGCAGCCACTGCACTGTaGAGGTGTCAGATAGTAAGGAAGAGAAAGGACTGCCATTTACCA +
Preference number: 2 (lower is better)
Translates to: RNKIGRASVRAATAL*RCQIVRKRKDCHLP
Trigger: TGGTAAATGGCAGTCCTTTCTCTTCCTTACTATCTGACACCTCAACAGTGCAGTGGCTGCCCTGACAGACGCCCTCCCAATCTTGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp CCCTGGTGTAGCATTTGTAACACAGCTAAAGCTGTGGCTCAGCCTTaGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTC +
Preference number: 2 (lower is better)
Translates to: PWCSICNTAKAVAQP*RFCSPEKGRFVGQF
Trigger: GAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGCTACACCAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR GCA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCTGGGAAAACTGCTGTTaGATTTCAGTGAGACCCACC +
Preference number: 2 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLWENCC*ISVRPT
Trigger: GGTGGGTCTCACTGAAATGCAACAGCAGTTTTCCCA...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR GCA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCTGTCAGGGCAGCCACTaGACTGTTGAGGTGTCAGAT +
Preference number: 2 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVCQGSH*TVEVSD
Trigger: ATCTGACACCTCAACAGTGCAGTGGCTGCCCTGACA...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp CTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCCTaGGCTCTCAAGTCTCCTCCAACTTTTCTCTTAGGAATGCCTTCA +
Preference number: 2 (lower is better)
Translates to: LFPREGKVCWAILLP*ALKSPPTFLLGMPS
Trigger: TGAAGGCATTCCTAAGAGAAAAGTTGGAGGAGACTTGAGAGCCAAGGGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR CCA 90 bp GGGATGGGGATTAGCAACGACTTCAAGATAAATCCCTTGCAAATGTCAAGTGTGCTCCTCCTGAGTCCTTaGGCGACTTCTCCACAGCAA +
Preference number: 2 (lower is better)
Translates to: GMGISNDFKINPLQMSSVLLLSP*ATSPQQ
Trigger: TTGCTGTGGAGAAGTCGCCCAAGGACTCAGGAGGAG...CACACTTGACATTTGCAAGGGATTTATCTTGAAGTCGTTGCTAATCCCCATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR-3UTR CCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGTGCTCAAGGTTTGATTaGCTGATTGAAAGAAAAGTC +
Preference number: 2 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGCSRFD*LIERKV
Trigger: GACTTTTCTTTCAATCAGCCAATCAAACCTTGAGCA...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR TCA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCGTAAGATTACAGGAGTaGCTTACACATCCACAGACA +
Preference number: 2 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTVRLQE*LTHPQT
Trigger: TGTCTGTGGATGTGTAAGTCACTCCTGTAATCTTAC...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR GCA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCGAAGTGGAACCCATGTaGAAACTTAAGAAATTAACG +
Preference number: 2 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVEVEPM*KLKKLT
Trigger: CGTTAATTTCTTAAGTTTGCACATGGGTTCCACTTC...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR CCA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACCTTTCCAAGAACTACTaGGGAAAGAGGAGGAATGCC +
Preference number: 2 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYLSKNY*GKRRNA
Trigger: GGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAG...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR GCA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAATACAATACTGACACTTaGTTACTGGCCCTGTATTCT +
Preference number: 2 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQYNTDT*LLALYS
Trigger: AGAATACAGGGCCAGTAAGCAAGTGTCAGTATTGTA...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 90 bp GACCTCTCACCTTTCTACTTAGAAATAGACTATTTGGTAGTAGTTTaGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGAT +
Preference number: 2 (lower is better)
Translates to: DLSPFYLEIDYLVVV*RCVHWTDSSHKKQD
Trigger: ATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAAATAGTCTATTTCTAAGTAGAAAGGTGAGAGGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 72 bp GATGGAGGTGGGCTGAGGAGCCCGGCTGGCAACCACTaGAAAACACGAGCCCTTTCAACAATGTTGCAACAC +
Preference number: 3 (lower is better)
Translates to: DGGGLRSPAGNH*KTRALSTMLQH
Trigger: GTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGTGGTTGCCAGCCGGGCTCCTCAGCCCACCTCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp TCTCCTTGCTTTAGAGCTGCGTTGATGAGATGGAGGTaGGCTGAGGAGCCCGGCTGGCAACCACTGAAAAAC +
Preference number: 3 (lower is better)
Translates to: SPCFRAALMRWR*AEEPGWQPLKN
Trigger: GTTTTTCAGTGGTTGCCAGCCGGGCTCCTCAGCCCACCTCCATCTCATCAACGCAGCTCTAAAGCAAGGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp GGCGGTAAGGCTCACACAGGACTCATGTCAGAGAGCTaGACAGGGACCCCCTGGTGTAGCATTTGTAACACA +
Preference number: 3 (lower is better)
Translates to: GGKAHTGLMSES*TGTPWCSICNT
Trigger: TGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACATGAGTCCTGTGTGAGCCTTACCGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp CAGCAGCTGCTAGGTAAAGGTAGGCATGGTATGTGGTaGGGGGCAGATCAAGGGCTAGGAAACTTCAGACCC +
Preference number: 3 (lower is better)
Translates to: QQLLGKGRHGMW*GADQGLGNFRP
Trigger: GGGTCTGAAGTTTCCTAGCCCTTGATCTGCCCCCCACCACATACCATGCCTACCTTTACCTAGCAGCTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR-3UTR CAA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGCTCAAGCAGCCAGTTaGCTCCCAAGCTGTCTGAAG +
Preference number: 3 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQAQAAS*LPSCLK
Trigger: CTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGC...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR-3UTR CAA 90 bp TCCTGTCTGCTGTTTTTGGATGTCCTGCACAGCCCCGTCAGTTCTGTTTCTCTTCCTCCTCCTGAGTCCTaGGGCGACTTCTCCACAGCA +
Preference number: 3 (lower is better)
Translates to: SCLLFLDVLHSPVSSVSLPPPES*GDFSTA
Trigger: TGCTGTGGAGAAGTCGCCCAAGGACTCAGGAGGAGG...AAGAGAAACAGAACTGACGGGGCTGTGCAGGACATCCAAAAACAGCAGACAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR GCA 72 bp TGCTGTTGCATTTCAGTGAGACCCACCCACTCTCCTTaGTTTAGAGCTGCGTTGATGAGATGGAGGTGGGCT +
Preference number: 3 (lower is better)
Translates to: CCCISVRPTHSP*FRAALMRWRWA
Trigger: AGCCCACCTCCATCTCATCAACGCAGCTCTAAAGCAAGGAGAGTGGGTGGGTCTCACTGAAATGCAACAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 72 bp CCAGGGTCAAATCCTGTCTGCTGTTTTTGGATGTCCTaGACAGCCCCGTCAGTTCTGTTTCTCTTGCTCTCC +
Preference number: 3 (lower is better)
Translates to: PGSNPVCCFWMS*TAPSVLFLLLS
Trigger: GGAGAGCAAGAGAAACAGAACTGACGGGGCTGTGCAGGACATCCAAAAACAGCAGACAGGATTTGACCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR CCA 72 bp GTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTaGGAGGGCGTCTGTCAGGGCAGCCACTGCACTGTT +
Preference number: 3 (lower is better)
Translates to: VHWTDSSHKKQD*EGVCQGSHCTV
Trigger: AACAGTGCAGTGGCTGCCCTGACAGACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp CCCCCTGGTGTAGCATTTGTAACACAGCTAAAGCTGTaGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGG +
Preference number: 3 (lower is better)
Translates to: PPGVAFVTQLKL*LSLCVSVPQRR
Trigger: CCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGCTACACCAGGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp ACAGGACTCATGTCAGAGAGCTGGACAGGGACCCCCTaGTGTAGCATTTGTAACACAGCTAAAGCTGTGGCT +
Preference number: 3 (lower is better)
Translates to: TGLMSESWTGTP*CSICNTAKAVA
Trigger: AGCCACAGCTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACATGAGTCCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 72 bp CCCCCTCCGGGTTTCCAAAGGACTCCTTCCACACTCTaGGCTTTGTTAGTATCCCCTTTCTTCTGCAGAAGT +
Preference number: 3 (lower is better)
Translates to: PPPGFQRTPSTL*ALLVSPFFCRS
Trigger: ACTTCTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGGAAACCCGGAGGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 72 bp AGCAACTTGACAGAGCTCCTGATTCCTCTCATAGTCTaGTGGTTCGCAGGGGGTGAAGGGGTGGATGCATTT +
Preference number: 3 (lower is better)
Translates to: SNLTELLIPLIV*WFAGGEGVDAF
Trigger: AAATGCATCCACCCCTTCACCCCCTGCGAACCATCAGACTATGAGAGGAATCAGGAGCTCTGTCAAGTTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR CCA 72 bp ACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTaGATGTCCTGCACAGCCCCGTCAGTTCTGTTTCTC +
Preference number: 3 (lower is better)
Translates to: TSDPGSNPVCCF*MSCTAPSVLFL
Trigger: GAGAAACAGAACTGACGGGGCTGTGCAGGACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR-3UTR CAA 90 bp CTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGATGTCCTGCACAGCCCTCAGTTCTGTTTCTCTaGCTCTCCTTGACTCTTCCT +
Preference number: 3 (lower is better)
Translates to: LQTQGQILSAVFGCPAQPSVLFL*LSLTLP
Trigger: AGGAAGAGTCAAGGAGAGCAAGAGAAACAGAACTGA...GGGCTGTGCAGGACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
3UTR GCA 72 bp GTAAGGAAGAGAAAGGACTGCCATTTACCAGGACATTaGAGTCTAGATGGGCCAGGCAGTGCTGGTAAATGG +
Preference number: 3 (lower is better)
Translates to: VRKRKDCHLPGH*SLDGPGSAGKW
Trigger: CCATTTACCAGCACTGCCTGGCCCATCTAGACTGCAATGTCCTGGTAAATGGCAGTCCTTTCTCTTCCTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 72 bp AAACAAGATTGGGAGGGCGTCTGTCAGGGCAGCCACTaGACTGTTGAGGTGTCAGATAGTAAGGAAGAGAAA +
Preference number: 3 (lower is better)
Translates to: KQDWEGVCQGSH*TVEVSDSKEEK
Trigger: TTTCTCTTCCTTACTATCTGACACCTCAACAGTGCAGTGGCTGCCCTGACAGACGCCCTCCCAATCTTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR GCA 72 bp GCATTTGTAACACAGCTAAAGCTGTGGCTCAGCCTTTaGGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTG +
Preference number: 3 (lower is better)
Translates to: AFVTQLKLWLSL*VSVPQRREGLL
Trigger: CAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 72 bp GGTGCCTGCCACAAGGTAAGTGAGAGGGCCGTCAGGTaGCACTTTTTACTTCTGTTTAATAGAAGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: GACHKVSERAVR*HFLLLFNRRKA
Trigger: TGCTTTCCTTCTATTAAACAGAAGTAAAAAGTGTCACCTGACGGCCCTCTCACTTACCTTGTGGCAGGCACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp TACAGAAAGGTTCCCACGATATACCCACAGGCACAGTaGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCC +
Preference number: 3 (lower is better)
Translates to: YRKVPTIYPQAQ*LITLSKSCACA
Trigger: GGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp GTGGAGACTGTAGTTACAATACTGACACTTGCTTACTaGCCCTGTATTCTCTGTAAACAAGGAGGCTGTTTG +
Preference number: 3 (lower is better)
Translates to: VETVVTILTLAY*PCILCKQGGCL
Trigger: CAAACAGCCTCCTTGTTTACAGAGAATACAGGGCCAGTAAGCAAGTGTCAGTATTGTAACTACAGTCTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CCA 72 bp TGCCTTCACCTCTTTAAAGACGGTAGCAGCTTTAAATaGGGACCAGACCTCTCACCTTTCTACTTAGAAATA +
Preference number: 3 (lower is better)
Translates to: CLHLFKDGSSFK*GPDLSPFYLEI
Trigger: TATTTCTAAGTAGAAAGGTGAGAGGTCTGGTCCCCATTTAAAGCTGCTACCGTCTTTAAAGAGGTGAAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR TCA 72 bp GATTACAGGAGTGACTTACACATCCACAGACAGTTCTaGTCAAACAGAAGTAAAGTCATGAACTCTTTTTCT +
Preference number: 3 (lower is better)
Translates to: DYRSDLHIHRQF*SNRSKVMNSFS
Trigger: AGAAAAAGAGTTCATGACTTTACTTCTGTTTGATCAGAACTGTCTGTGGATGTGTAAGTCACTCCTGTAATC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGGGGGAGCGCCTCTCCTaGCCCTCTCCAGTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGGERLS*PSPVAA
Trigger: CGCGGCCACTGGAGAGGGCCAGGAGAGGCGCTCCCC...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
63% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGAGCTGCGGTTCAGGTTaGCCAGGGGCCGCACCTCGC +
Preference number: 4 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGSCGSG*PGAAPR
Trigger: GCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCT...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCGTTGCGCAGGGAGCTaGGGTTCAGGTTGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGRCAGS*GSGCPG
Trigger: CCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACG...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCAGGCGGCCCAGCTCCTaGGTGGCCAGACTGCGCCCC +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSRRPSS*VARLRP
Trigger: GGGGCGCAGTCTGGCCACGCAGGAGCTGGGCCGCCT...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCGCGCGATGCGCGCCATaGTGGGCCAGCCGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSARCAP*WASRWQ
Trigger: CTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGC...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGCCCGGCTCGCCGCGATaGCTCCGATGGCTTGCTCAG +
Preference number: 4 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQPGSPR*LRWLAQ
Trigger: CTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGG...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCGGCCCAGCTCCTGCGTaGCCAGACTGCGCCCCTCCG +
Preference number: 4 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTGPAPA*PDCAPP
Trigger: CGGAGGGGCGCAGTCTGGCCACGCAGGAGCTGGGCC...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCCCCTCAGGGTGGCCGTaGTCGCAGTCGAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSPSGWP*SQSRAA
Trigger: GGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGG...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCACCTCGGTGCCGTTaGGCAGGGAGCTGCGGTTCA +
Preference number: 4 (lower is better)
Translates to: FCLQPFQELLGKEEECRRPPRCR*AGSCGS
Trigger: TGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGG...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGGTCGAACCCTGCGGGTaGCATGACACCACCTCGGTG +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKVEPCG*HDTTSV
Trigger: CACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGAC...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGATGGCTCCGATGGCTTaGTCAGATCGCCACACCGGC +
Preference number: 4 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQMAPMA*SDRHTG
Trigger: GCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCAT...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGAAGCACCTCTGTGCTCTaGGCGATGCGCGCCATGCTG +
Preference number: 4 (lower is better)
Translates to: FCLQPFQELLGKEEECRRSTSVL*AMRAML
Trigger: CAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCT...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTCGATGCGCGCCATGCTaGGCCAGCCGGTGGCAGCGC +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNARCAPC*ASRWQR
Trigger: GCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCG...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCAGGCACCAGCCACAGTaGGGGTCTGCCGCTGCTAAG +
Preference number: 4 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLRHQPQ*GSAAAK
Trigger: CTTAGCAGCGGCAGACCCCCACTGTGGCTGGTGCCT...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAACTGTGCTCTGCGCGATaGGCGCCATGCTGGGCCAGC +
Preference number: 4 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKLCSAR*APCWAS
Trigger: GCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAG...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGCCCAGCTGCAGCTCCTaGCGTGCGCCTGGATCTCAC +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQPSCSS*RAPGSH
Trigger: GTGAGATCCAGGCGCACGCCAGGAGCTGCAGCTGGG...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGGCACCTCCAGGATGCTaGTCAGGTAGACCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGAPPGC*SGRPVW
Trigger: CCAAACTGGTCTACCTGACCAGCATCCTGGAGGTGC...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGGCTCCATCAGGTCCCTaGTCAGCACCTCCAGGATGC +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKAPSGP*SAPPGC
Trigger: GCATCCTGGAGGTGCTGACCAGGGACCTGATGGAGC...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGTGTTTTGCCCACCGCTaGTCCAGGTGGTGGCAGGAA +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKCFAHR*SRWWQE
Trigger: TTCCTGCCACCACCTGGATCAGCGGTGGGCAAAACA...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCACAGCGCTTTGCAGGTaGTCACGTCCACGGGACCCT +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSTALCR*SRPRDP
Trigger: AGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGT...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGATGACACCACCTCGGTaGCGTTGCGCAGGGAGCTGC +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQMTPPR*RCAGSC
Trigger: GCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCAT...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTGTCTGCTGGGGATATTaGAGGCACAGGTCCAGTTCA +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVVCWGY*RHRSSS
Trigger: TGAACTGGACCTGTGCCTGCAATATCCCCAGCAGAC...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTCCGGCAGCACATAGGTaGCGGCCACCGCCAGGTACC +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNAPAAHR*RPPPGT
Trigger: GGTACCTGGCGGTGGCCGCCACCTATGTGCTGCCGG...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTAGAGGCAGAGAGCCGTaGTGGCGGGGGAGCGCCTCT +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNARGREP*WRGSAS
Trigger: AGAGGCGCTCCCCCGCCACCACGGCTCTCTGCCTCT...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 72 bp ATTGGGAGGGCGTCTGTCAGGGCAGCCACTGCACTGTaGAGGTGTCAGATAGTAAGGAAGAGAAAGGACTGC +
Preference number: 4 (lower is better)
Translates to: IGRASVRAATAL*RCQIVRKRKDC
Trigger: GCAGTCCTTTCTCTTCCTTACTATCTGACACCTCAACAGTGCAGTGGCTGCCCTGACAGACGCCCTCCCAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTACGAGACGGGCTCCGTaGAGTTGCCCGCTTGGTCCC +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNATRRAP*SCPLGP
Trigger: GGGACCAAGCGGGCAACTGCACGGAGCCCGTCTCGT...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCCCGCGATGGCTCCGATaGCTTGCTCAGATCGCCACA +
Preference number: 4 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVPRWLR*LAQIAT
Trigger: TGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGG...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAACAGTCGAGGGCAGCCTaGCCCTGGAACAGCACCTCT +
Preference number: 4 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKQSRAA*PWNSTS
Trigger: AGAGGTGCTGTTCCAGGGCCAGGCTGCCCTCGACTG...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGAGTTGGCTTCTCCCCTaGCAGAGCAGCTTGCCCGTG +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQSWLLP*QSSLPV
Trigger: CACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAACT...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTTGCTTCTCCAGGGTATaGATGACGGTAACCAGGAAG +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVCFSRV*MTVTRK
Trigger: CTTCCTGGTTACCGTCATCCATACCCTGGAGAAGCA...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGATGGGGCCCTGCTATTaGGCAAACTCCAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGMGPCY*ANSKCF
Trigger: GAAGCATTTGGAGTTTGCCCAATAGCAGGGCCCCAT...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTTTCTGTATCAATCTCTaGCTCCACTCGGTACCCTGT +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVFCINL*LHSVPC
Trigger: ACAGGGTACCGAGTGGAGTCAGAGATTGATACAGAA...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTGCTGGTCCAGGCAGCTaGCGCTCGCCACGAACACGC +
Preference number: 4 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGAGPGS*RSPRTR
Trigger: GCGTGTTCGTGGCGAGCGGCAGCTGCCTGGACCAGC...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAAAGGCGTCCACGAAGTaGAGGCTGCCCGCACTACCG +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSEKASTK*RLPALP
Trigger: CGGTAGTGCGGGCAGCCTGCACTTCGTGGACGCCTT...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTGGAACAGCACCTCTGTaGTCTGCGCGATGCGCGCCA +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNAGTAPL*SARCAP
Trigger: TGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCC...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGATCAGCACCTCCAGGATaGTGGTCAGGTAGACCAGTT +
Preference number: 4 (lower is better)
Translates to: FCLQPFQELLGKEEECRRSAPPG*WSGRPV
Trigger: AACTGGTCTACCTGACCAGCATCCTGGAGGTGCTGA...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATTGCTGGGCCAGCCGGTaGCAGCGCCACTCGTGTAGT +
Preference number: 4 (lower is better)
Translates to: RLFATTTSALFTERFPRYCWASR*QRHSCS
Trigger: ACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCA...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp ACTGAAAAACACGAGCCCTTTCAACAATGTTGCAACACTGTTAGTTTTTGGTTTCGGCGGCCCTCAGGGTaGCCGTGGTCGCAGTCGAGG +
Preference number: 4 (lower is better)
Translates to: TEKHEPFQQCCNTVSFWFRRPSG*PWSQSR
Trigger: CCTCGACTGCGACCACGGCCACCCTGAGGGCCGCCG...AAACCAAAAACTAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCACAACCTTCAGTAACTaGCCATCTCCGGTCCCCAAG +
Preference number: 4 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLTTFSN*PSPVPK
Trigger: CTTGGGGACCGGAGATGGCCAGTTACTGAAGGTTGT...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTGTGTCATTTAGCACATaGCTAACCCGGATCACATCC +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVVSFST*LTRITS
Trigger: GGATGTGATCCGGGTTAGCCATGTGCTAAATGACAC...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAAGGATCTCACTCATCCTaGAGAGGCAGAGAGCCGTGG +
Preference number: 4 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKGSHSS*RGREPW
Trigger: CCACGGCTCTCTGCCTCTTCAGGATGAGTGAGATCC...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTGTCGCGATCGGATGCTaGGGGGTTGCAGCGGTTCGC +
Preference number: 4 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGVAIGC*GVAAVR
Trigger: GCGAACCGCTGCAACCCCGCAGCATCCGATCGCGAC...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGAATCCCCTTGAAAAGTaGACCTTTGTAACGGGAGGC +
Preference number: 4 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQNPLEK*TFVTGG
Trigger: GCCTCCCGTTACAAAGGTGCACTTTTCAAGGGGATT...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp GGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGATGTCGTCTGCTGGGGATATTaGAGGCACAGGTCCAGTTCA +
Preference number: 4 (lower is better)
Translates to: GLGNFRPRVKSCLLFLDVVCWGY*RHRSSS
Trigger: TGAACTGGACCTGTGCCTGCAATATCCCCAGCAGAC...GACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS-3UTR CCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTGTGCAGTTGCCCGCTTaGTCCCGGTATAGGCGAGAG +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNAVQLPA*SRYRRE
Trigger: CTCTCGCCTATACCGGGACCAAGCGGGCAACTGCAC...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGCCCTTGTTTATTTTCTaGTTCAGGGTCGTCACCAGC +
Preference number: 4 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQPLFIF*FRVVTS
Trigger: GCTGGTGACGACCCTGAACCAGAAAATAAACAAGGG...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTACCCTGCGGGTGACATaGCACCACCTCGGTGCCGTT +
Preference number: 4 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGTLRVT*HHLGAV
Trigger: AACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGT...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCCAAGACCAATCTCATTaGGCTGGAGTCCGTATGGAG +
Preference number: 4 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTQDQSH*AGVRME
Trigger: CTCCATACGGACTCCAGCTCAATGAGATTGGTCTTG...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGATGCTTGGGCAATCACTaGCAAACAGCTGTCTATGTG +
Preference number: 4 (lower is better)
Translates to: FCLQPFQELLGKEEECRRCLGNH*QTAVYV
Trigger: CACATAGACAGCTGTTTGTCAGTGATTGCCCAAGCA...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTCGTGTCGCGATCGGATaGTGCGGGGTTGCAGCGGTT +
Preference number: 4 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGRVAIG*CGVAAV
Trigger: AACCGCTGCAACCCCGCAGCATCCGATCGCGACACG...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATCTGCAGCTCCTGGCGTaGGCCTGGATCTCACTCATC +
Preference number: 4 (lower is better)
Translates to: RLFATTTSALFTERFPRYLQLLA*AWISLI
Trigger: GATGAGTGAGATCCAGGCGCACGCCAGGAGCTGCAG...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTCGTCTTTCATTTCTTTaGGGCTTGATGGAAGTGAGA +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVRLSFL*GLMEVR
Trigger: TCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACG...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAACTCCTGGCGTGCGCCTaGATCTCACTCATCCTGAAG +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSELLACA*ISLILK
Trigger: CTTCAGGATGAGTGAGATCCAGGCGCACGCCAGGAG...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTTCAGGTAGACCAGTTTaGTTTGCAGAGCAATGGTTA +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVSGRPV*FAEQWL
Trigger: TAACCATTGCTCTGCAAACCAAACTGGTCTACCTGA...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGTCTGGCAGAATCAAGTaGCAGTGGTCATCTGAGTAC +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKSGRIK*QWSSEY
Trigger: GTACTCAGATGACCACTGCCACTTGATTCTGCCAGA...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 72 bp AACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTaGGATGTCCTGCACAGCCCCGTCAGTTCTGTTTCT +
Preference number: 4 (lower is better)
Translates to: NFRPRVKSCLLF*DVLHSPVSSVS
Trigger: AGAAACAGAACTGACGGGGCTGTGCAGGACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS-3UTR TCA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCCCACGTGGAAGGAACTaGTTCCTGTTCCACATAGAG +
Preference number: 4 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVPRGRN*FLFHIE
Trigger: CTCTATGTGGAACAGGAATCAGTTCCTTCCACGTGG...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAAGTGCGTGAAGCCACCTaGCTCAGGGAAGAAAGTTCT +
Preference number: 4 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKVREAT*LREESS
Trigger: AGAACTTTCTTCCCTGAGTCAGGTGGCTTCACGCAC...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGTGCAAGAGTTGTTTCTaGGCTTCTTCCAGCCCTCGT +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQCKSCF*ASSSPR
Trigger: ACGAGGGCTGGAAGAAGCTCAGAAACAACTCTTGCA...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CTGAGTCCTTGGGCGACTTCTCCACAGCAACTTGACAGAGCTCCTGATTCCTCTAGGAGAAGGTCGCATTaGCAACTAAGACATCTAAGA +
Preference number: 4 (lower is better)
Translates to: LSPWATSPQQLDRAPDSSRRRSH*QLRHLR
Trigger: TCTTAGATGTCTTAGTTGTCAATGCGACCTTCTCCT...AGAGGAATCAGGAGCTCTGTCAAGTTGCTGTGGAGAAGTCGCCCAAGGACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS-3UTR GCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGAAACCTGCAGAAAGTTaGTGCGCAGTATTCAGAGAC +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKKPAES*CAVFRD
Trigger: GTCTCTGAATACTGCGCAGCAACTTTCTGCAGGTTT...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAAGCAGCTCCAGCTGTTaGCTCTGCTTTCGACTGAGC +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSESSSSC*LCFRLS
Trigger: GCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCT...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCTCAGCATCAGCTTTaGTTGCATATTACTGCACTG +
Preference number: 4 (lower is better)
Translates to: FCLQPFQELLGKEEECRRPQHQL*LHITAL
Trigger: CAGTGCAGTAATATGCAACCAAAGCTGATGCTGAGG...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGAAGGAGAAGGTCGCATTaGCAACTAAGACATTATAGC +
Preference number: 4 (lower is better)
Translates to: FCLQPFQELLGKEEECRRRRRSH*QLRHYS
Trigger: GCTATAATGTCTTAGTTGTCAATGCGACCTTCTCCT...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATATGGTTCGCAGGGGGTaGAGGGGTGGATGCATTTCT +
Preference number: 4 (lower is better)
Translates to: RLFATTTSALFTERFPRYMVRRG*RGGCIS
Trigger: AGAAATGCATCCACCCCTTCACCCCCTGCGAACCAT...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTAGTGAGAATTTCATATaGGTGTCATTTAGCACATGG +
Preference number: 4 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVSENFI*VSFSTW
Trigger: CCATGTGCTAAATGACACGCATATGAAATTCTCACT...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCTTGGCGTCTCTGTTGTaGATATCTTCAGTGAAGATG +
Preference number: 4 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLLASLL*ISSVKM
Trigger: CATCTTCACTGAAGATATGCACAACAGAGACGCCAA...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATCTCCTCCTGAGTCCTTaGGCGACTTCTCCACAGCAA +
Preference number: 4 (lower is better)
Translates to: RLFATTTSALFTERFPRYLLLSP*ATSPQQ
Trigger: TTGCTGTGGAGAAGTCGCCCAAGGACTCAGGAGGAG...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGTTAGAAAATACCACGTaGAAGGAACTGATTCCTGTT +
Preference number: 4 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGLENTT*KELIPV
Trigger: AACAGGAATCAGTTCCTTCCACGTGGTATTTTCTAA...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCTCTCGTTCTTGTCATTaGCGTCTCTGTTGTGCATAT +
Preference number: 4 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLSRSCH*RLCCAY
Trigger: ATATGCACAACAGAGACGCCAATGACAAGAACGAGA...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCCTTTGGCTTGGCCTATaGTATCGCAGTCAAGAACGT +
Preference number: 4 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVLWLGL*YRSQER
Trigger: ACGTTCTTGACTGCGATACCATAGGCCAAGCCAAAG...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCGCATCCATGAATGCTTaGGCAATCACTGACAAACAG +
Preference number: 4 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTASMNA*AITDKQ
Trigger: CTGTTTGTCAGTGATTGCCCAAGCATTCATGGATGC...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCGAGAAGTTTATTGGTTaGTGCTTCCTTCCCCAGTTG +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSEKFIG*CFLPQL
Trigger: CAACTGGGGAAGGAAGCACCAACCAATAAACTTCTC...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAACGCAGTCAAGAACGTTaGCTGAAATATTCCGGCAGA +
Preference number: 4 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKRSQER*LKYSGR
Trigger: TCTGCCGGAATATTTCAGTCAACGTTCTTGACTGCG...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGCGATGTCTCTTCCCTTaGACTACTTGGAATGCTTCT +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQRCLFP*TTWNAS
Trigger: AGAAGCATTCCAAGTAGTTCAAGGGAAGAGACATCG...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCACTGAGAAGTTCTTCTaGTTCTCCAGGGTATGGATG +
Preference number: 4 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVTEKFF*FSRVWM
Trigger: CATCCATACCCTGGAGAAGCAGAAGAACTTCTCAGT...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCTGTAGATGTTCTTCATaGGATGAGGAACGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSCRCSS*DEERAC
Trigger: ACAAGCTCGTTCCTCATCCCATGAAGAACATCTACA...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGGTCCCACCGTCAAACTaGATGCAAACGTCTTTCATT +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQVPPSN*MQTSFI
Trigger: AATGAAAGACGTTTGCATCCAGTTTGACGGTGGGAC...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGTCTCATAGTGGCCAATaGTGTTTAGCTTGGTTATTC +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKSHSGQ*CLAWLF
Trigger: GAATAACCAAGCTAAACACCATTGGCCACTATGAGA...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCCATAGAGAAGTTTATTaGTTGGTGCTTCCTTCCCCA +
Preference number: 4 (lower is better)
Translates to: QAQWLITLSKSCACALVSHREVY*LVLPSP
Trigger: TGGGGAAGGAAGCACCAACCAATAAACTTCTCTATG...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 72 bp AGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTaGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTG +
Preference number: 4 (lower is better)
Translates to: RKVPTIYPQAQW*ITLSKSCACAL
Trigger: CAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 72 bp AGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCCTaGGCTCTCAAGTCTCCTCCAACTTTTCTCTTAGGA +
Preference number: 4 (lower is better)
Translates to: REGKVCWAILLP*ALKSPPTFLLG
Trigger: TCCTAAGAGAAAAGTTGGAGGAGACTTGAGAGCCAAGGGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 72 bp AGCATTTGTAACACAGCTAAAGCTGTGGCTCAGCCTTaGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTT +
Preference number: 4 (lower is better)
Translates to: SICNTAKAVAQP*RFCSPEKGRFV
Trigger: AACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGCTTTAGCTGTGTTACAAATGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGAACCTCTGGACAGTTTaGAGTCAAATTCTCACCAAG +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQNLWTV*SQILTK
Trigger: CTTGGTGAGAATTTGACTTCAAACTGTCCAGAGGTT...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR TCA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGCAAAATTTCTGCCCATaGTGGTTATGTTTTGCCCAC +
Preference number: 4 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQQNFCP*WLCFAH
Trigger: GTGGGCAAAACATAACCATCATGGGCAGAAATTTTG...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCCACCGTCAAACTGGATaGAAACGTCTTTCATTTCTT +
Preference number: 4 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTHRQTG*KRLSFL
Trigger: AAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTG...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGATGGAGAACCATTTTTaGTTAGGAAGGCTTGGAAAA +
Preference number: 4 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKMENHF*LGRLGK
Trigger: TTTTCCAAGCCTTCCTAAGCAAAAATGGTTCTCCAT...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATTCTTCAGTGAAGATGTaGGTGAAGCCACCTGACTCA +
Preference number: 4 (lower is better)
Translates to: RLFATTTSALFTERFPRYSSVKM*VKPPDS
Trigger: TGAGTCAGGTGGCTTCACGCACATCTTCACTGAAGA...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAAAGTTTATTGGTTGGTaGTTCCTTCCCCAGTTGCTG +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSEKFIGW*FLPQLL
Trigger: CAGCAACTGGGGAAGGAAGCACCAACCAATAAACTT...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAACTAAGACATTATAGCTaGGTCTGCTGGGGATATTGC +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSELRHYS*VCWGYC
Trigger: GCAATATCCCCAGCAGACCCAGCTATAATGTCTTAG...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTTATCAGGGAACAATGTaGCAGAGCAATGTAGGACAG +
Preference number: 4 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNAYQGTM*QSNVGQ
Trigger: CTGTCCTACATTGCTCTGCCACATTGTTCCCTGATA...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATCCAATCTCATTGAGCTaGAGTCCGTATGGAGAACCA +
Preference number: 4 (lower is better)
Translates to: RLFATTTSALFTERFPRYPISLS*SPYGEP
Trigger: TGGTTCTCCATACGGACTCCAGCTCAATGAGATTGG...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAAGTATTTTATAGCAAATaGGGCCCTGCTATTGGGCAA +
Preference number: 4 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKVFYSK*GPAIGQ
Trigger: TTGCCCAATAGCAGGGCCCCATTTGCTATAAAATAC...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AGGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGATGTCAAGTGAAGGTGTTCTaGTTTGCTTCTGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: RARKLQTQGQILSAVFGCQVKVF*FASENL
Trigger: AAGGTTTTCAGAAGCAAACCAGAACACCTTCACTTG...ACATCCAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS-3UTR TCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAATACTTGGAATGCTTCTaGATCTGGCAGAATCAAGTG +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSEYLECF*IWQNQV
Trigger: CACTTGATTCTGCCAGATTCAGAAGCATTCCAAGTA...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAACACCAGCAAATAGAATaGCTCTCCAACAGTCTCCCG +
Preference number: 4 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQHQQIE*LSNSLP
Trigger: CGGGAGACTGTTGGAGAGCCATTCTATTTGCTGGTG...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACAGGGGAAGTAGACACTaGCGTTCCAGAGAAAGGCGT +
Preference number: 4 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYRGSRH*RSRERR
Trigger: ACGCCTTTCTCTGGAACGGCAGTGTCTACTTCCCCT...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AAATTAACGACAAAGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAATTTATGTTCACATTTaGGTTTCCCTTCAGCTCGTG +
Preference number: 4 (lower is better)
Translates to: KLTTKSSSSSQFAPKLSEIYVHI*VSLQLV
Trigger: CACGAGCTGAAGGGAAACGCAAATGTGAACATAAAT...TTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCTTTGTCGTTAATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp ACTGAAAAACACGAGCCCTTTCAACAATGTTGCAACACTGTTAGTTTTTGGTTTATTCCGGCAGACATCTaGACTCTCGTTTTCCGGGAT +
Preference number: 4 (lower is better)
Translates to: TEKHEPFQQCCNTVSFWFIPADI*TLVFRD
Trigger: ATCCCGGAAAACGAGAGTGCAGATGTCTGCCGGAAT...AAACCAAAAACTAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp ACTGAAAAACACGAGCCCTTTCAACAATGTTGCAACACTGTTAGTTTTTGGTTTAGTGAATTGCCACCTTaGTCGACAGCAGCTTGGTCA +
Preference number: 4 (lower is better)
Translates to: TEKHEPFQQCCNTVSFWFSELPP*STAAWS
Trigger: TGACCAAGCTGCTGTCGACCAAGGTGGCAATTCACT...AAACCAAAAACTAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACAGATGCTTCCCACAATaGTCACTGTGGTTCTCTCTC +
Preference number: 4 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYRCFPQ*SLWFSL
Trigger: GAGAGAGAACCACAGTGACCATTGTGGGAAGCATCT...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAAGGATTTCCGTTTACTaGAGTTTGCAACAGGAATTC +
Preference number: 4 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQRISVY*SLQQEF
Trigger: GAATTCCTGTTGCAAACTGCAGTAAACGGAAATCCT...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAATTCCTCTTTGTAGGTTaGTATATCCTTGGCATAGAG +
Preference number: 4 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQFLFVG*YILGIE
Trigger: CTCTATGCCAAGGATATACCAACCTACAAAGAGGAA...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACCCGTTTACTGCAGTTTaGAACAGGAATTCTTCTCAC +
Preference number: 4 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYPFTAV*NRNSSH
Trigger: GTGAGAAGAATTCCTGTTGCAAACTGCAGTAAACGG...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp ACTGAAAAACACGAGCCCTTTCAACAATGTTGCAACACTGTTAGTTTTTGGTTTGCTAGCGATGGTGTTTaGATTCTTGATACTCTTGAT +
Preference number: 4 (lower is better)
Translates to: TEKHEPFQQCCNTVSFWFASDGV*ILDTLD
Trigger: ATCAAGAGTATCAAGAATGCAAACACCATCGCTAGC...AAACCAAAAACTAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
3UTR CAA 72 bp CCTTTCTACTTAGAAATAGACTATTTGGTAGTAGTTTaGAGATGTGTCCATTGGACAGACAGTAGTCACAAG +
Preference number: 4 (lower is better)
Translates to: PFYLEIDYLVVV*RCVHWTDSSHK
Trigger: CTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAAATAGTCTATTTCTAAGTAGAAAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR GCA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACAGGCAAATCCCTGATTaGTTTGTAGTAAGACTTCAC +
Preference number: 4 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYRQIPD*FVVRLH
Trigger: GTGAAGTCTTACTACAAAGCAATCAGGGATTTGCCT...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAACAATGGTGTTTAGCTTaGTTATTCCATCTTCAAGAA +
Preference number: 4 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQQWCLA*LFHLQE
Trigger: TTCTTGAAGATGGAATAACCAAGCTAAACACCATTG...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp ACTGAAAAACACGAGCCCTTTCAACAATGTTGCAACACTGTTAGTTTTTGGTTTAGGTTGGTATATCCTTaGCATAGAGAAGTTTATTGG +
Preference number: 4 (lower is better)
Translates to: TEKHEPFQQCCNTVSFWFRLVYP*HREVYW
Trigger: CCAATAAACTTCTCTATGCCAAGGATATACCAACCT...AAACCAAAAACTAACAGTGTTGCAACATTGTTGAAAGGGCTCGTGTTTTTCAGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CCA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACTTTTTGTTTTCAGCTTaGGCATCCAGAAAGTCAAAG +
Preference number: 4 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYFLFSA*ASRKSK
Trigger: CTTTGACTTTCTGGATGCCCAAGCTGAAAACAAAAA...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp ACGAACACGCCGTCCGCCCGGCTCGCCGCGATGGCTCCGATGGCTTaGTCAGATCGCCACACCGGCTCGTCCGCGCCCCGGGCGGGCGCT +
Preference number: 5 (lower is better)
Translates to: TNTPSARLAAMAPMA*SDRHTGSSAPRAGA
Trigger: AGCGCCCGCCCGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp TCGCCACGAACACGCCGTCCGCCCGGCTCGCCGCGATGGCTCCGATaGCTTGCTCAGATCGCCACACCGGCTCGTCCGCGCCCCGGGCGG +
Preference number: 5 (lower is better)
Translates to: SPRTRRPPGSPRWLR*LAQIATPARPRPGR
Trigger: CCGCCCGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGTGGCGA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp TTGCTCAGATCGCCACACCGGCTCGTCCGCGCCCCGGGCGGGCGCTaGCAGCGCCAGCAGATAGGCGATCAGGGGCAACGGTGCGGCGGG +
Preference number: 5 (lower is better)
Translates to: LLRSPHRLVRAPGGR*QRQQIGDQGQRCGG
Trigger: CCCGCCGCACCGTTGCCCCTGATCGCCTATCTGCTGGCGCTGGCAGCGCCCGCCCGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp AGCTGCCGCTCGCCACGAACACGCCGTCCGCCCGGCTCGCCGCGATaGCTCCGATGGCTTGCTCAGATCGCCACACCGGCTCGTCCGCGC +
Preference number: 5 (lower is better)
Translates to: SCRSPRTRRPPGSPR*LRWLAQIATPARPR
Trigger: GCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGTGGCGAGCGGCAGCT
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp TGGTGGCGGGGGAGCGCCTCTCCTGGCCCTCTCCAGTGGCCGCGCTaGACACGCCGGCCCAGATGTCCACAGCCTCCACCAGGCTGGAGG +
Preference number: 5 (lower is better)
Translates to: WWRGSASPGPLQWPR*TRRPRCPQPPPGWR
Trigger: CCTCCAGCCTGGTGGAGGCTGTGGACATCTGGGCCGGCGTGTTCAGCGCGGCCACTGGAGAGGGCCAGGAGAGGCGCTCCCCCGCCACCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CCTGCGGGTGACATGACACCACCTCGGTGCCGTTGCGCAGGGAGCTaGGGTTCAGGTTGCCCAGGGGCCGCACCTCGCAGGCGCCCCGGT +
Preference number: 5 (lower is better)
Translates to: PAGDMTPPRCRCAGS*GSGCPGAAPRRRPG
Trigger: ACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp CGGGGTTGCAGCGGTTCGCGGTCTCCGGCTCCGGCAGCACATAGGTaGCGGCCACCGCCAGGTACCAGAGGTCGGTGCCACTCGCGCGGT +
Preference number: 5 (lower is better)
Translates to: RGCSGSRSPAPAAHR*RPPPGTRGRCHSRG
Trigger: ACCGCGCGAGTGGCACCGACCTCTGGTACCTGGCGGTGGCCGCCACCTATGTGCTGCCGGAGCCGGAGACCGCGAACCGCTGCAACCCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp AGGCGGCGGCCCTCAGGGTGGCCGTGGTCGCAGTCGAGGGCAGCCTaGCCCTGGAACAGCACCTCTGTGCTCTGCGCGATGCGCGCCATG +
Preference number: 5 (lower is better)
Translates to: RRRPSGWPWSQSRAA*PWNSTSVLCAMRAM
Trigger: CATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCCAGGGCCAGGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGGCCGCCGCCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp GCCTCCACCAGGCTGGAGGAAAGCAGTAGGCGGCGGCCCTCAGGGTaGCCGTGGTCGCAGTCGAGGGCAGCCTGGCCCTGGAACAGCACC +
Preference number: 5 (lower is better)
Translates to: ASTRLEESSRRRPSG*PWSQSRAAWPWNST
Trigger: GGTGCTGTTCCAGGGCCAGGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGGCCGCCGCCTACTGCTTTCCTCCAGCCTGGTGGAGGC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CAGCCGTCGAACCCTGCGGGTGACATGACACCACCTCGGTGCCGTTaGGCAGGGAGCTGCGGTTCAGGTTGCCCAGGGGCCGCACCTCGC +
Preference number: 5 (lower is better)
Translates to: QPSNPAGDMTPPRCR*AGSCGSGCPGAAPR
Trigger: GCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CCGGCAGCACATAGGTGGCGGCCACCGCCAGGTACCAGAGGTCGGTaGCACTCGCGCGGTACACCACACCAGCCGTCGAACCCTGCGGGT +
Preference number: 5 (lower is better)
Translates to: PAAHRWRPPPGTRGR*HSRGTPHQPSNPAG
Trigger: ACCCGCAGGGTTCGACGGCTGGTGTGGTGTACCGCGCGAGTGGCACCGACCTCTGGTACCTGGCGGTGGCCGCCACCTATGTGCTGCCGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp GCGCCCCTCCGTGTTCTTGAGCGCGATAGCCGTGTCGCGATCGGATaGTGCGGGGTTGCAGCGGTTCGCGGTCTCCGGCTCCGGCAGCAC +
Preference number: 5 (lower is better)
Translates to: APLRVLERDSRVAIG*CGVAAVRGLRLRQH
Trigger: GTGCTGCCGGAGCCGGAGACCGCGAACCGCTGCAACCCCGCAGCATCCGATCGCGACACGGCTATCGCGCTCAAGAACACGGAGGGGCGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp GAGAGAGCCTGTTCTTCAGGCTGTAGTCCAGCTGGTCCAGGCAGCTaGCGCTCGCCACGAACACGCCGTCCGCCCGGCTCGCCGCGATGG +
Preference number: 5 (lower is better)
Translates to: ERACSSGCSPAGPGS*RSPRTRRPPGSPRW
Trigger: CCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGTGGCGAGCGGCAGCTGCCTGGACCAGCTGGACTACAGCCTGAAGAACAGGCTCTCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CCACACCAGCCGTCGAACCCTGCGGGTGACATGACACCACCTCGGTaGCGTTGCGCAGGGAGCTGCGGTTCAGGTTGCCCAGGGGCCGCA +
Preference number: 5 (lower is better)
Translates to: PHQPSNPAGDMTPPR*RCAGSCGSGCPGAA
Trigger: TGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTGGTGTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp TGCAGGCTGCCCGCACTACCGCGCAGTTTCAGGCGGCCCAGCTCCTaGGTGGCCAGACTGCGCCCCTCCGTGTTCTTGAGCGCGATAGCC +
Preference number: 5 (lower is better)
Translates to: CRLPALPRSFRRPSS*VARLRPSVFLSAIA
Trigger: GGCTATCGCGCTCAAGAACACGGAGGGGCGCAGTCTGGCCACGCAGGAGCTGGGCCGCCTGAAACTGCGCGGTAGTGCGGGCAGCCTGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp ACCAGGCTGGAGGAAAGCAGTAGGCGGCGGCCCTCAGGGTGGCCGTaGTCGCAGTCGAGGGCAGCCTGGCCCTGGAACAGCACCTCTGTG +
Preference number: 5 (lower is better)
Translates to: TRLEESSRRRPSGWP*SQSRAAWPWNSTSV
Trigger: CACAGAGGTGCTGTTCCAGGGCCAGGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGGCCGCCGCCTACTGCTTTCCTCCAGCCTGGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp GTGCCACTCGCGCGGTACACCACACCAGCCGTCGAACCCTGCGGGTaGCATGACACCACCTCGGTGCCGTTGCGCAGGGAGCTGCGGTTC +
Preference number: 5 (lower is better)
Translates to: VPLARYTTPAVEPCG*HDTTSVPLRRELRF
Trigger: GAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTGGTGTGGTGTACCGCGCGAGTGGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CCCCTCCGTGTTCTTGAGCGCGATAGCCGTGTCGCGATCGGATGCTaGGGGGTTGCAGCGGTTCGCGGTCTCCGGCTCCGGCAGCACATA +
Preference number: 5 (lower is better)
Translates to: PLRVLERDSRVAIGC*GVAAVRGLRLRQHI
Trigger: TATGTGCTGCCGGAGCCGGAGACCGCGAACCGCTGCAACCCCGCAGCATCCGATCGCGACACGGCTATCGCGCTCAAGAACACGGAGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CCTGGCCCTGGAACAGCACCTCTGTGCTCTGCGCGATGCGCGCCATaGTGGGCCAGCCGGTGGCAGCGCCACTCGTGTAGTTGTAGGGAT +
Preference number: 5 (lower is better)
Translates to: PGPGTAPLCSARCAP*WASRWQRHSCSCRD
Trigger: ATCCCTACAACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCCAGGGCCAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp ACTCGCGCGGTACACCACACCAGCCGTCGAACCCTGCGGGTGACATaGCACCACCTCGGTGCCGTTGCGCAGGGAGCTGCGGTTCAGGTT +
Preference number: 5 (lower is better)
Translates to: TRAVHHTSRRTLRVT*HHLGAVAQGAAVQV
Trigger: AACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTGGTGTGGTGTACCGCGCGAGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp GGCCCTGGAACAGCACCTCTGTGCTCTGCGCGATGCGCGCCATGCTaGGCCAGCCGGTGGCAGCGCCACTCGTGTAGTTGTAGGGATAGT +
Preference number: 5 (lower is better)
Translates to: GPGTAPLCSARCAPC*ASRWQRHSCSCRDS
Trigger: ACTATCCCTACAACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCCAGGGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp AGTAGACACTGCCGTTCCAGAGAAAGGCGTCCACGAAGTGCAGGCTaGCCGCACTACCGCGCAGTTTCAGGCGGCCCAGCTCCTGCGTGG +
Preference number: 5 (lower is better)
Translates to: SRHCRSRERRPRSAG*PHYRAVSGGPAPAW
Trigger: CCACGCAGGAGCTGGGCCGCCTGAAACTGCGCGGTAGTGCGGGCAGCCTGCACTTCGTGGACGCCTTTCTCTGGAACGGCAGTGTCTACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp GCACCTCTGTGCTCTGCGCGATGCGCGCCATGCTGGGCCAGCCGGTaGCAGCGCCACTCGTGTAGTTGTAGGGATAGTAGGGGAAGTAGA +
Preference number: 5 (lower is better)
Translates to: APLCSARCAPCWASR*QRHSCSCRDSRGSR
Trigger: TCTACTTCCCCTACTATCCCTACAACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp CCCACCGCTGATCCAGGTGGTGGCAGGAACTATCAGGGAACAATGTaGCAGAGCAATGTAGGACAGAGCCCCTGCAGACGAGCAGGTCCC +
Preference number: 5 (lower is better)
Translates to: PTADPGGGRNYQGTM*QSNVGQSPCRRAGP
Trigger: GGGACCTGCTCGTCTGCAGGGGCTCTGTCCTACATTGCTCTGCCACATTGTTCCCTGATAGTTCCTGCCACCACCTGGATCAGCGGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CAGCGCCACTCGTGTAGTTGTAGGGATAGTAGGGGAAGTAGACACTaGCGTTCCAGAGAAAGGCGTCCACGAAGTGCAGGCTGCCCGCAC +
Preference number: 5 (lower is better)
Translates to: QRHSCSCRDSRGSRH*RSRERRPRSAGCPH
Trigger: GTGCGGGCAGCCTGCACTTCGTGGACGCCTTTCTCTGGAACGGCAGTGTCTACTTCCCCTACTATCCCTACAACTACACGAGTGGCGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGAACCACCTCGGTGCCGTaGCGCAGGGAGCTGCGGTTC +
Preference number: 5 (lower is better)
Translates to: FCLQPFQELLGKEEECRRTTSVP*RRELRF
Trigger: GAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGT...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp GACTCCGTGCGCCTCAGCATCAGCTTTGGTTGCATATTACTGCACTaGTCCATCAGGTCCCTGGTCAGCACCTCCAGGATGCTGGTCAGG +
Preference number: 5 (lower is better)
Translates to: DSVRLSISFGCILLH*SIRSLVSTSRMLVR
Trigger: CCTGACCAGCATCCTGGAGGTGCTGACCAGGGACCTGATGGAGCAGTGCAGTAATATGCAACCAAAGCTGATGCTGAGGCGCACGGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp CCACAGACTCCGTGCGCCTCAGCATCAGCTTTGGTTGCATATTACTaGACTGCTCCATCAGGTCCCTGGTCAGCACCTCCAGGATGCTGG +
Preference number: 5 (lower is better)
Translates to: PQTPCASASALVAYY*TAPSGPWSAPPGCW
Trigger: CCAGCATCCTGGAGGTGCTGACCAGGGACCTGATGGAGCAGTGCAGTAATATGCAACCAAAGCTGATGCTGAGGCGCACGGAGTCTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp TCGCGGATCTCCTTCCGGAGTTCGCTCTCCAGCAGCTCCAGCTGTTaGCTCTGCTTTCGACTGAGCTCCTTGGATTTGTACCTCGTCACC +
Preference number: 5 (lower is better)
Translates to: SRISFRSSLSSSSSC*LCFRLSSLDLYLVT
Trigger: GGTGACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCTGGAGAGCGAACTCCGGAAGGAGATCCGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp GGAGTTCGCTCTCCAGCAGCTCCAGCTGTTGGCTCTGCTTTCGACTaGGCTCCTTGGATTTGTACCTCGTCACCACCACAGCCACAACGA +
Preference number: 5 (lower is better)
Translates to: GVRSPAAPAVGSAFD*APWICTSSPPQPQR
Trigger: TCGTTGTGGCTGTGGTGGTGACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCTGGAGAGCGAACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AGAGTAGCTCAAGCAGCCAGTTTGCTCCCAAGCTGTCTGAAGAACTTTGTCAAAGAGCTGCGGTTCAGGTaGCCCAGGGGCCGCACCTCG +
Preference number: 5 (lower is better)
Translates to: RVAQAASLLPSCLKNFVKELRFR*PRGRTS
Trigger: CGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTC...TTTGACAAAGTTCTTCAGACAGCTTGGGAGCAAACTGGCTGCTTGAGCTACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp ATCTCCTTCCGGAGTTCGCTCTCCAGCAGCTCCAGCTGTTGGCTCTaGTTTCGACTGAGCTCCTTGGATTTGTACCTCGTCACCACCACA +
Preference number: 5 (lower is better)
Translates to: ISFRSSLSSSSSCWL*FRLSSLDLYLVTTT
Trigger: TGTGGTGGTGACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCTGGAGAGCGAACTCCGGAAGGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp GGTCCCTGGTCAGCACCTCCAGGATGCTGGTCAGGTAGACCAGTTTaGTTTGCAGAGCAATGGTTAGGAAGGAGGCGAAGAGACACCTGT +
Preference number: 5 (lower is better)
Translates to: GPWSAPPGCWSGRPV*FAEQWLGRRRRDTC
Trigger: ACAGGTGTCTCTTCGCCTCCTTCCTAACCATTGCTCTGCAAACCAAACTGGTCTACCTGACCAGCATCCTGGAGGTGCTGACCAGGGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp GCCAGAGTAGCCAGTCTTCGTTCAGGGTGTACAGCGCTTTGCAGGTaGTCACGTCCACGGGACCCTTGTTTATTTTCTGGTTCAGGGTCG +
Preference number: 5 (lower is better)
Translates to: ARVASLRSGCTALCR*SRPRDPCLFSGSGS
Trigger: CGACCCTGAACCAGAAAATAAACAAGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGTACACCCTGAACGAAGACTGGCTACTCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AGTCCTTGGGCGACTTCTCCACAGCAACTTGACAGAGCTCCTGATTCCTCTCATACAGGTCCAGTTCAGTaGGCTTCTCCCCTGGCAGAG +
Preference number: 5 (lower is better)
Translates to: SPWATSPQQLDRAPDSSHTGPVQ*ASPLAE
Trigger: CTCTGCCAGGGGAGAAGCCAACTGAACTGGACCTGT...ATGAGAGGAATCAGGAGCTCTGTCAAGTTGCTGTGGAGAAGTCGCCCAAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS TCA 90 bp ATATCCAGCCAGTTTTCAAAGCTCCCAGCATGTGTGCAATCCCCTTaGAAAGTGCACCTTTGTAACGGGAGGCACCAGCCACAGTGGGGG +
Preference number: 5 (lower is better)
Translates to: ISSQFSKLPACVQSP*KVHLCNGRHQPQWG
Trigger: CCCCCACTGTGGCTGGTGCCTCCCGTTACAAAGGTGCACTTTTCAAGGGGATTGCACACATGCTGGGAGCTTTGAAAACTGGCTGGATAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp GGTGCCATAAACAGACGTCAGGTCAGAGTGGATCAGTGTAGACGATaGAATTGGCTGGACCCGTTCAGGCCGATCCCCTTCTTTGCAGTT +
Preference number: 5 (lower is better)
Translates to: GAINRRQVRVDQCRR*NWLDPFRPIPFFAV
Trigger: AACTGCAAAGAAGGGGATCGGCCTGAACGGGTCCAGCCAATTGCATCGTCTACACTGATCCACTCTGACCTGACGTCTGTTTATGGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp AAGGGTACTGTTCCAAAGCTATCAACCACATCCAACTTATCCATCTaGAGCTCGGCAAAGCCGTCGCGGATCTCCTTCCGGAGTTCGCTC +
Preference number: 5 (lower is better)
Translates to: KGTVPKLSTTSNLSI*SSAKPSRISFRSSL
Trigger: GAGCGAACTCCGGAAGGAGATCCGCGACGGCTTTGCCGAGCTCCAGATGGATAAGTTGGATGTGGTTGATAGCTTTGGAACAGTACCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCACAGGTCCAGTTCAGTaGGCTTCTCCCCTGGCAGAG +
Preference number: 5 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTTGPVQ*ASPLAE
Trigger: CTCTGCCAGGGGAGAAGCCAACTGAACTGGACCTGT...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCGGTCTGCTGGGGATATaGCAGGCACAGGTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTGLLGI*QAQVQF
Trigger: GAACTGGACCTGTGCCTGCAATATCCCCAGCAGACC...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCCAGCAGCTCCAGCTGTaGGCTCTGCTTTCGACTGAG +
Preference number: 5 (lower is better)
Translates to: QAQWLITLSKSCACALVSQQLQL*ALLSTE
Trigger: CTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCTG...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGAATGGGGCCCTGCTATaGGGCAAACTCCAAATGCTT +
Preference number: 5 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGNGALL*GKLQML
Trigger: AAGCATTTGGAGTTTGCCCAATAGCAGGGCCCCATT...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp ATAAACAGACGTCAGGTCAGAGTGGATCAGTGTAGACGATGCAATTaGCTGGACCCGTTCAGGCCGATCCCCTTCTTTGCAGTTGTGCTC +
Preference number: 5 (lower is better)
Translates to: INRRQVRVDQCRRCN*LDPFRPIPFFAVVL
Trigger: GAGCACAACTGCAAAGAAGGGGATCGGCCTGAACGGGTCCAGCCAATTGCATCGTCTACACTGATCCACTCTGACCTGACGTCTGTTTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp GCATCAGCTTTGGTTGCATATTACTGCACTGCTCCATCAGGTCCCTaGTCAGCACCTCCAGGATGCTGGTCAGGTAGACCAGTTTGGTTT +
Preference number: 5 (lower is better)
Translates to: ASALVAYYCTAPSGP*SAPPGCWSGRPVWF
Trigger: AAACCAAACTGGTCTACCTGACCAGCATCCTGGAGGTGCTGACCAGGGACCTGATGGAGCAGTGCAGTAATATGCAACCAAAGCTGATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCCCACGATATACGGGCTCCGTGCAGTaGCCCGCTTGGTCCCGGTAT +
Preference number: 5 (lower is better)
Translates to: RLFATTTSALFTERFPRYTGSVQ*PAWSRY
Trigger: ATACCGGGACCAAGCGGGCAACTGCACGGAGCCCGT...ATATCGTGGGAACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GATCAAGGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGGTCTGCTGGGGATATaGCAGGCACAGGTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: DQGLGNFRPRVKSCLLFLGLLGI*QAQVQF
Trigger: GAACTGGACCTGTGCCTGCAATATCCCCAGCAGACC...CAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCCTTGATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS GCA 90 bp GGGGGTCTGCCGCTGCTAAGCACTCTGAACAGGATTTCCGTTTACTaGAGTTTGCAACAGGAATTCTTCTCACCTCCTTCCCAGCTGTTA +
Preference number: 5 (lower is better)
Translates to: GGLPLLSTLNRISVY*SLQQEFFSPPSQLL
Trigger: TAACAGCTGGGAAGGAGGTGAGAAGAATTCCTGTTGCAAACTGCAGTAAACGGAAATCCTGTTCAGAGTGCTTAGCAGCGGCAGACCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp AGGACAGAGCCCCTGCAGACGAGCAGGTCCCACCGTCAAACTGGATaGAAACGTCTTTCATTTCTTTGCGGCTTGATGGAAGTGAGAATT +
Preference number: 5 (lower is better)
Translates to: RTEPLQTSRSHRQTG*KRLSFLCGLMEVRI
Trigger: AATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGACCTGCTCGTCTGCAGGGGCTCTGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp TCTTCACCACGCACTCCGAGTGTCTTGCGGAGATGCTTCCCACAATaGTCACTGTGGTTCTCTCTCGGAGGCTTCGAAGTATCTGAATTT +
Preference number: 5 (lower is better)
Translates to: SSPRTPSVLRRCFPQ*SLWFSLGGFEVSEF
Trigger: AAATTCAGATACTTCGAAGCCTCCGAGAGAGAACCACAGTGACCATTGTGGGAAGCATCTCCGCAAGACACTCGGAGTGCGTGGTGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp CGGCTTGATGGAAGTGAGAATTTCATATGCGTGTCATTTAGCACATaGCTAACCCGGATCACATCCCTCTCGCAGGTACTGGTTCCTCGC +
Preference number: 5 (lower is better)
Translates to: RLDGSENFICVSFST*LTRITSLSQVLVPR
Trigger: GCGAGGAACCAGTACCTGCGAGAGGGATGTGATCCGGGTTAGCCATGTGCTAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp CCTCCAGGATGCTGGTCAGGTAGACCAGTTTGGTTTGCAGAGCAATaGTTAGGAAGGAGGCGAAGAGACACCTGTCCTTTACTGAGAAGT +
Preference number: 5 (lower is better)
Translates to: PPGCWSGRPVWFAEQ*LGRRRRDTCPLLRS
Trigger: ACTTCTCAGTAAAGGACAGGTGTCTCTTCGCCTCCTTCCTAACCATTGCTCTGCAAACCAAACTGGTCTACCTGACCAGCATCCTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TATTTACAGAAAGGTTCCCACGATATACCCACAGGCACAGTGGTTGATAACGCTCCTCCTCCTGAGTCCTaGGGCGACTTCTCCACAGCA +
Preference number: 5 (lower is better)
Translates to: YLQKGSHDIPTGTVVDNAPPPES*GDFSTA
Trigger: TGCTGTGGAGAAGTCGCCCAAGGACTCAGGAGGAGG...AGCGTTATCAACCACTGTGCCTGTGGGTATATCGTGGGAACCTTTCTGTAAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGAACGTCCACGGGACCCTaGTTTATTTTCTGGTTCAGG +
Preference number: 5 (lower is better)
Translates to: FCLQPFQELLGKEEECRRTSTGP*FIFWFR
Trigger: CCTGAACCAGAAAATAAACAAGGGTCCCGTGGACGT...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp GAGGAACTGTCAATGTCCAGGAGTTCTTTCTGCCGTGTTCCCACCTaGAGCTCAAGACCAATCTCATTGAGCTGGAGTCCGTATGGAGAA +
Preference number: 5 (lower is better)
Translates to: EELSMSRSSFCRVPT*SSRPISLSWSPYGE
Trigger: TTCTCCATACGGACTCCAGCTCAATGAGATTGGTCTTGAGCTTCAGGTGGGAACACGGCAGAAAGAACTCCTGGACATTGACAGTTCCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp ACCCTTGTTTATTTTCTGGTTCAGGGTCGTCACCAGCAAATAGAATaGCTCTCCAACAGTCTCCCGGAGGAAACCGGAGAGACAGACAGA +
Preference number: 5 (lower is better)
Translates to: TLVYFLVQGRHQQIE*LSNSLPEETGETDR
Trigger: TCTGTCTGTCTCTCCGGTTTCCTCCGGGAGACTGTTGGAGAGCCATTCTATTTGCTGGTGACGACCCTGAACCAGAAAATAAACAAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAACGCCCCTCCGTGTTCTaGAGCGCGATAGCCGTGTCG +
Preference number: 5 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQRPSVF*SAIAVS
Trigger: CGACACGGCTATCGCGCTCAAGAACACGGAGGGGCG...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCGGGTGGATGCATTTCTaGTCCCGTTTACACCAAGCA +
Preference number: 5 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTGWMHF*SRLHQA
Trigger: TGCTTGGTGTAAACGGGACAAGAAATGCATCCACCC...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGTCATTGGCGTCTCTGTaGTGCATATCTTCAGTGAAG +
Preference number: 5 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQSLASL*CISSVK
Trigger: CTTCACTGAAGATATGCACAACAGAGACGCCAATGA...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TGTCAGAGAGCTGGACAGGGACCCCCTGGTGTAGCATTTGTAACACAGCTAAAGCTCTCGTTCTTGTCATaGGCGTCTCTGTTGTGCATA +
Preference number: 5 (lower is better)
Translates to: CQRAGQGPPGVAFVTQLKLSFLS*ASLLCI
Trigger: TATGCACAACAGAGACGCCAATGACAAGAACGAGAG...CTTTAGCTGTGTTACAAATGCTACACCAGGGGGTCCCTGTCCAGCTCTCTGACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGATGCTTCCTTCCCCAGTaGCTGTTCTGTGAGAGAAAA +
Preference number: 5 (lower is better)
Translates to: FCLQPFQELLGKEEECRRCFLPQ*LFCERK
Trigger: TTTTCTCTCACAGAACAGCAACTGGGGAAGGAAGCA...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GATCAAGGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGGGCCCAATGATCTCCTaGGAGTCACCTACTGTCAAG +
Preference number: 5 (lower is better)
Translates to: DQGLGNFRPRVKSCLLFLGPMIS*ESPTVK
Trigger: CTTGACAGTAGGTGACTCCAAGGAGATCATTGGGCC...CAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCCTTGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS GCA 90 bp TTTTCAAAGACGACATTTAATGCCACAGTGTTGAATTCGGGGACCTaGCAGAGTAGCCAGTCTTCGTTCAGGGTGTACAGCGCTTTGCAG +
Preference number: 5 (lower is better)
Translates to: FSKTTFNATVLNSGT*QSSQSSFRVYSALQ
Trigger: CTGCAAAGCGCTGTACACCCTGAACGAAGACTGGCTACTCTGGCAGGTCCCCGAATTCAACACTGTGGCATTAAATGTCGTCTTTGAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCTGCCTTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGATGGAAAACCTTTTCTTaGGCTTGGCCTATGGTATCG +
Preference number: 5 (lower is better)
Translates to: FCLQPFQELLGKEEECRRWKTFS*AWPMVS
Trigger: CGATACCATAGGCCAAGCCAAAGAAAAGGTTTTCCA...TCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAAGGCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GCTGTGGCTCAGCCTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGTATGGAGAACCATTTTaGCTTAGGAAGGCTTGGAAA +
Preference number: 5 (lower is better)
Translates to: AVAQPLRFCSPEKGRFVGYGEPF*LRKAWK
Trigger: TTTCCAAGCCTTCCTAAGCAAAAATGGTTCTCCATA...CCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAGGCTGAGCCACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGTTGGTCGACAGCAGCTaGGTCAGATACATTTCTTTT +
Preference number: 5 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQLVDSS*VRYISF
Trigger: AAAAGAAATGTATCTGACCAAGCTGCTGTCGACCAA...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTTTTTACATGCAAGAGTaGTTTCTGAGCTTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVFYMQE*FLSFFQ
Trigger: CTGGAAGAAGCTCAGAAACAACTCTTGCATGTAAAA...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp ATCCCTCTCGCAGGTACTGGTTCCTCGCAGGATCATGGTGATATTTaGCGCCTGGGTGAAGTTTGCTCCAGTAACAATCACATTGCTTTT +
Preference number: 5 (lower is better)
Translates to: IPLAGTGSSQDHGDI*RLGEVCSSNNHIAF
Trigger: AAAAGCAATGTGATTGTTACTGGAGCAAACTTCACCCAGGCGTCAAATATCACCATGATCCTGCGAGGAACCAGTACCTGCGAGAGGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp GTTCTTTCTGCCGTGTTCCCACCTGAAGCTCAAGACCAATCTCATTaGGCTGGAGTCCGTATGGAGAACCATTTTTGCTTAGGAAGGCTT +
Preference number: 5 (lower is better)
Translates to: VLSAVFPPEAQDQSH*AGVRMENHFCLGRL
Trigger: AAGCCTTCCTAAGCAAAAATGGTTCTCCATACGGACTCCAGCTCAATGAGATTGGTCTTGAGCTTCAGGTGGGAACACGGCAGAAAGAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp TCGCAGGTACTGGTTCCTCGCAGGATCATGGTGATATTTGACGCCTaGGTGAAGTTTGCTCCAGTAACAATCACATTGCTTTTCCCTAAG +
Preference number: 5 (lower is better)
Translates to: SQVLVPRRIMVIFDA*VKFAPVTITLLFPK
Trigger: CTTAGGGAAAAGCAATGTGATTGTTACTGGAGCAAACTTCACCCAGGCGTCAAATATCACCATGATCCTGCGAGGAACCAGTACCTGCGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTCAGCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGCACAGTTGGTGAAGTaGAATCTTTCTGATAAGTTC +
Preference number: 5 (lower is better)
Translates to: FSLSKNYWGKRRNAADPQAQLVK*NLSDKF
Trigger: GAACTTATCAGAAAGATTCAACTTCACCAACTGTGC...CTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GCCTTTCCAAGAACTACTGGGGAAAGAGGAGGAATGCCGCAGACCCTCAGGGTTTTTAATGACGCACAGTaGGTGAAGTTGAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: AFPRTTGERGGMPQTLRVFNDAQ*VKLNLS
Trigger: AGAAAGATTCAACTTCACCAACTGTGCGTCATTAAA...AACCCTGAGGGTCTGCGGCATTCCTCCTCTTTCCCCAGTAGTTCTTGGAAAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCTCAGTTCTGTTTCTCTaGCTCTCCTTGACTCTTCCT +
Preference number: 5 (lower is better)
Translates to: QAQWLITLSKSCACALVSSVLFL*LSLTLP
Trigger: AGGAAGAGTCAAGGAGAGCAAGAGAAACAGAACTGA...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTGTCCAAGTAGGTGTCTaGGACCCTCAGCTTCACGGC +
Preference number: 5 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGVQVGV*DPQLHG
Trigger: GCCGTGAAGCTGAGGGTCCAAGACACCTACTTGGAC...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CTTTGCGTTTCTGTTCCCCAGAGAAGGGAAGGTTTGTTGGGCAATTCTCCTACCTCGATGTCTCTTCCCTaGAACTACTTGGAATGCTTC +
Preference number: 5 (lower is better)
Translates to: LCVSVPQRREGLLGNSPTSMSLP*NYLECF
Trigger: GAAGCATTCCAAGTAGTTCAAGGGAAGAGACATCGA...GGTAGGAGAATTGCCCAACAAACCTTCCCTTCTCTGGGGAACAGAAACGCAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp ACTTGCCCAAAGTTCCTAACTCCTGAAAGAGGCGGTAAGGCTCACACAGGACTCCTTCCTCTTTGTAGGTaGGTATATCCTTGGCATAGA +
Preference number: 5 (lower is better)
Translates to: TCPKFLTPERGGKAHTGLLPLCR*VYPWHR
Trigger: TCTATGCCAAGGATATACCAACCTACAAAGAGGAAG...GAGTCCTGTGTGAGCCTTACCGCCTCTTTCAGGAGTTAGGAACTTTGGGCAAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp AAACCTTTTCTTTGGCTTGGCCTATGGTATCGCAGTCAAGAACGTTaGCTGAAATATTCCGGCAGACATCTGCACTCTCGTTTTCCGGGA +
Preference number: 5 (lower is better)
Translates to: KPFLWLGLWYRSQER*LKYSGRHLHSRFPG
Trigger: TCCCGGAAAACGAGAGTGCAGATGTCTGCCGGAATATTTCAGTCAACGTTCTTGACTGCGATACCATAGGCCAAGCCAAAGAAAAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp AGGAAGGAGGCGAAGAGACACCTGTCCTTTACTGAGAAGTTCTTCTaGTTCTCCAGGGTATGGATGACGGTAACCAGGAAGCTTTTATTA +
Preference number: 5 (lower is better)
Translates to: RKEAKRHLSFTEKFF*FSRVWMTVTRKLLL
Trigger: TAATAAAAGCTTCCTGGTTACCGTCATCCATACCCTGGAGAAGCAGAAGAACTTCTCAGTAAAGGACAGGTGTCTCTTCGCCTCCTTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACGATGGCTCCGATGGCTaGCTCAGATCGCCACACCGG +
Preference number: 5 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYDGSDG*LRSPHR
Trigger: CCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATC...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGATTGGGAGGGCGTCACGTCTTTCATTTCTTaGCGGCTTGATGGAAGTGAG +
Preference number: 5 (lower is better)
Translates to: RCVHWTDSSHKKQDWEGVTSFIS*RLDGSE
Trigger: CTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGT...GACGCCCTCCCAATCTTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp CTTTTCTTTGGCTTGGCCTATGGTATCGCAGTCAAGAACGTTGACTaGAATATTCCGGCAGACATCTGCACTCTCGTTTTCCGGGATTTT +
Preference number: 5 (lower is better)
Translates to: LFFGLAYGIAVKNVD*NIPADICTLVFRDF
Trigger: AAAATCCCGGAAAACGAGAGTGCAGATGTCTGCCGGAATATTTCAGTCAACGTTCTTGACTGCGATACCATAGGCCAAGCCAAAGAAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp ACGTCTTTCATTTCTTTGCGGCTTGATGGAAGTGAGAATTTCATATaGGTGTCATTTAGCACATGGCTAACCCGGATCACATCCCTCTCG +
Preference number: 5 (lower is better)
Translates to: TSFISLRLDGSENFI*VSFSTWLTRITSLS
Trigger: CGAGAGGGATGTGATCCGGGTTAGCCATGTGCTAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp CAGGCACAGTGGTTGATAACGCTTTCTAAAAGCTGTGCATGTGCCTTGGTCTCCCCAGTAACAATCACATaGCTTTTCCCTAAGGTTGAT +
Preference number: 5 (lower is better)
Translates to: QAQWLITLSKSCACALVSPVTIT*LFPKVD
Trigger: ATCAACCTTAGGGAAAAGCAATGTGATTGTTACTGG...GGAGACCAAGGCACATGCACAGCTTTTAGAAAGCGTTATCAACCACTGTGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp CCACCTTGGTCGACAGCAGCTTGGTCAGATACATTTCTTTTACTTTaGACTTGTGTTTCCCTCGATGTCTCTTCCCTTGAACTACTTGGA +
Preference number: 5 (lower is better)
Translates to: PPWSTAAWSDTFLLL*TCVSLDVSSLELLG
Trigger: TCCAAGTAGTTCAAGGGAAGAGACATCGAGGGAAACACAAGTTCAAAGTAAAAGAAATGTATCTGACCAAGCTGCTGTCGACCAAGGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 90 bp AGCAGGTCCCACCGTCAAACTGGATGCAAACGTCTTTCATTTCTTTaGGGCTTGATGGAAGTGAGAATTTCATATGCGTGTCATTTAGCA +
Preference number: 5 (lower is better)
Translates to: SRSHRQTGCKRLSFL*GLMEVRISYACHLA
Trigger: TGCTAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGACCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp CTGTTCTGTGAGAGAAAAGGCATCCATGAATGCTTGGGCAATCACTaGCAAACAGCTGTCTATGTGTGGTGTCTTCTTAATGTCAAAGAC +
Preference number: 5 (lower is better)
Translates to: LFCERKGIHECLGNH*QTAVYVWCLLNVKD
Trigger: GTCTTTGACATTAAGAAGACACCACACATAGACAGCTGTTTGTCAGTGATTGCCCAAGCATTCATGGATGCCTTTTCTCTCACAGAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp TTCAGCTTGGGCATCCAGAAAGTCAAAGAAGTATTTTATAGCAAATaGGGCCCTGCTATTGGGCAAACTCCAAATGCTTCGGAAGAGTTT +
Preference number: 5 (lower is better)
Translates to: FSLGIQKVKEVFYSK*GPAIGQTPNASEEF
Trigger: AAACTCTTCCGAAGCATTTGGAGTTTGCCCAATAGCAGGGCCCCATTTGCTATAAAATACTTCTTTGACTTTCTGGATGCCCAAGCTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GATCAAGGGCTAGGAAACTTCAGACCCAGGGTCAAATCCTGTCTGCTGTTTTTGTTTAATGACGCACAGTaGGTGAAGTTGAATCTTTCT +
Preference number: 5 (lower is better)
Translates to: DQGLGNFRPRVKSCLLFLFNDAQ*VKLNLS
Trigger: AGAAAGATTCAACTTCACCAACTGTGCGTCATTAAA...CAAAAACAGCAGACAGGATTTGACCCTGGGTCTGAAGTTTCCTAGCCCTTGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS-3UTR CAA 90 bp CCAAAGGACTCCTTCCACACTCTGAGCTTTGTTAGTATCCCCTTTCTTCTGCAGTGTGAAATGATGAGGTaGTCGATGACGTCAAAATTT +
Preference number: 5 (lower is better)
Translates to: PKDSFHTLSFVSIPFLLQCEMMR*SMTSKF
Trigger: AAATTTTGACGTCATCGACAACCTCATCATTTCACA...CTGCAGAAGAAAGGGGATACTAACAAAGCTCAGAGTGTGGAAGGAGTCCTTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTTCGCAGTCAAGAACGTaGACTGAAATATTCCGGCAG +
Preference number: 5 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGSQSRT*TEIFRQ
Trigger: CTGCCGGAATATTTCAGTCAACGTTCTTGACTGCGA...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp GGGATGGGGATTAGCAACGACTTCAAGATAAATCCCTTGCAAATGTCAAGTGTGGCACAGTTGGTGAAGTaGAATCTTTCTGATAAGTTC +
Preference number: 5 (lower is better)
Translates to: GMGISNDFKINPLQMSSVAQLVK*NLSDKF
Trigger: GAACTTATCAGAAAGATTCAACTTCACCAACTGTGC...CACACTTGACATTTGCAAGGGATTTATCTTGAAGTCGTTGCTAATCCCCATCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS-3UTR CAA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAAGAAACCTGCAGAAAGTaGCTGCGCAGTATTCAGAGA +
Preference number: 5 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQETCRK*LRSIQR
Trigger: TCTCTGAATACTGCGCAGCAACTTTCTGCAGGTTTC...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTAGAGAAGTTTATTGGTaGGTGCTTCCTTCCCCAGTT +
Preference number: 5 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGREVYW*VLPSPV
Trigger: AACTGGGGAAGGAAGCACCAACCAATAAACTTCTCT...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp TTCAGAGACATTTATGTTCACATTTGCGTTTCCCTTCAGCTCGTGTaGAATGATGAGGTTGTCGATGACGTCAAAATTTCTGCCCATGAT +
Preference number: 5 (lower is better)
Translates to: FRDIYVHICVSLQLV*NDEVVDDVKISAHD
Trigger: ATCATGGGCAGAAATTTTGACGTCATCGACAACCTCATCATTTCACACGAGCTGAAGGGAAACGCAAATGTGAACATAAATGTCTCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACTTTAATGCCACAGTGTaGAATTCGGGGACCTGCCAG +
Preference number: 5 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYFNATV*NSGTCQ
Trigger: CTGGCAGGTCCCCGAATTCAACACTGTGGCATTAAA...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 90 bp ATCCCTGATTGCTTTGTAGTAAGACTTCACTTCCTCTTTGTAGGTTaGTATATCCTTGGCATAGAGAAGTTTATTGGTTGGTGCTTCCTT +
Preference number: 5 (lower is better)
Translates to: IPDCFVVRLHFLFVG*YILGIEKFIGWCFL
Trigger: AAGGAAGCACCAACCAATAAACTTCTCTATGCCAAGGATATACCAACCTACAAAGAGGAAGTGAAGTCTTACTACAAAGCAATCAGGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TTGGTAGTAGTTTTGAGATGTGTCCATTGGACAGACAGTAGTCACAAGAAACAATCCGTTTACTGCAGTTaGCAACAGGAATTCTTCTCA +
Preference number: 5 (lower is better)
Translates to: LVVVLRCVHWTDSSHKKQSVYCS*QQEFFS
Trigger: TGAGAAGAATTCCTGTTGCAAACTGCAGTAAACGGA...TTGTTTCTTGTGACTACTGTCTGTCCAATGGACACATCTCAAAACTACTACCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACAACCTTTTCTTTGGCTaGGCCTATGGTATCGCAGTC +
Preference number: 5 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYNLFFG*AYGIAV
Trigger: GACTGCGATACCATAGGCCAAGCCAAAGAAAAGGTT...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp TGTAAACAAGGAGGCTGTTTGCAACAACCACTTCAGCTCTATTTACAGAAAGGTCCAATGGTGTTTAGCTaGGTTATTCCATCTTCAAGA +
Preference number: 5 (lower is better)
Translates to: CKQGGCLQQPLQLYLQKGPMVFS*VIPSSR
Trigger: TCTTGAAGATGGAATAACCAAGCTAAACACCATTGG...ACCTTTCTGTAAATAGAGCTGAAGTGGTTGTTGCAAACAGCCTCCTTGTTTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACGAAGAGGGAGGCTGTTaGTTTTCCAGATGTGTACAA +
Preference number: 5 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYEEGGC*FSRCVQ
Trigger: TTGTACACATCTGGAAAACAAACAGCCTCCCTCTTC...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 90 bp TTAAGAATTCTTCCATTTCTAAAGATGACAATGGAGGCAAATCCCTaGTTGCTTTGTAGTAAGACTTCACTTCCTCTTTGTAGGTTGGTA +
Preference number: 5 (lower is better)
Translates to: LRILPFLKMTMEANP*LLCSKTSLPLCRLV
Trigger: TACCAACCTACAAAGAGGAAGTGAAGTCTTACTACAAAGCAATCAGGGATTTGCCTCCATTGTCATCTTTAGAAATGGAAGAATTCTTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS-3UTR CAA 90 bp AACAGAAGTAAAGTCATGAACTCTTTTTCTTACAATACCCAACATGTCCACTACATGGTGTTTGCATTCTaGATACTCTTGATCTTGCAA +
Preference number: 5 (lower is better)
Translates to: NRSKVMNSFSYNTQHVHYMVFAF*ILLILQ
Trigger: TTGCAAGATCAAGAGTATCAAGAATGCAAACACCAT...GTAGTGGACATGTTGGGTATTGTAAGAAAAAGAGTTCATGACTTTACTTCTGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp CACGAACACGCCGTCCGCCCGGCTCGCCGCGATGGCTCCGATGGCTaGCTCAGATCGCCACACCGGCTCGTCCGCGCCCCGGGCGGGCGC +
Preference number: 6 (lower is better)
Translates to: HEHAVRPARRDGSDG*LRSPHRLVRAPGGR
Trigger: GCGCCCGCCCGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGTG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCGTCCGCCCGGCTCGCCGCGATGGCTCCGATGGCTTaGTCAGATCGCCACACCGGCTCGTCCGCGCCCCGG +
Preference number: 6 (lower is better)
Translates to: PSARLAAMAPMA*SDRHTGSSAPR
Trigger: CCGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp GCCGTCCGCCCGGCTCGCCGCGATGGCTCCGATGGCTaGCTCAGATCGCCACACCGGCTCGTCCGCGCCCCG +
Preference number: 6 (lower is better)
Translates to: AVRPARRDGSDG*LRSPHRLVRAP
Trigger: CGGGGCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCTCGGTGCCGTTGCGCAGGGAGCTGCGGTTCAGGTTaGCCAGGGGCCGCACCTCGCAGGCGCCCCGGTCGA +
Preference number: 6 (lower is better)
Translates to: PRCRCAGSCGSG*PGAAPRRRPGR
Trigger: TCGACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp ACCTCGGTGCCGTTGCGCAGGGAGCTGCGGTTCAGGTaGCCCAGGGGCCGCACCTCGCAGGCGCCCCGGTCG +
Preference number: 6 (lower is better)
Translates to: TSVPLRRELRFR*PRGRTSQAPRS
Trigger: CGACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp ACACGCCGTCCGCCCGGCTCGCCGCGATGGCTCCGATaGCTTGCTCAGATCGCCACACCGGCTCGTCCGCGC +
Preference number: 6 (lower is better)
Translates to: TRRPPGSPRWLR*LAQIATPARPR
Trigger: GCGCGGACGAGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGCGTGT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCTGGCCCTGGAACAGCACCTCTGTGCTCTGCGCGATaGGCGCCATGCTGGGCCAGCCGGTGGCAGCGCCAC +
Preference number: 6 (lower is better)
Translates to: PGPGTAPLCSAR*APCWASRWQRH
Trigger: GTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCCAGGGCCAGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp AGGCTGGAGGAAAGCAGTAGGCGGCGGCCCTCAGGGTaGCCGTGGTCGCAGTCGAGGGCAGCCTGGCCCTGG +
Preference number: 6 (lower is better)
Translates to: RLEESSRRRPSG*PWSQSRAAWPW
Trigger: CCAGGGCCAGGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGGCCGCCGCCTACTGCTTTCCTCCAGCCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp CATGACACCACCTCGGTGCCGTTGCGCAGGGAGCTGCGGTTCAGGTaGCCCAGGGGCCGCACCTCGCAGGCGCCCCGGTCGAAGGTCCAG +
Preference number: 6 (lower is better)
Translates to: HDTTSVPLRRELRFR*PRGRTSQAPRSKVQ
Trigger: CTGGACCTTCGACCGGGGCGCCTGCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GGGAGCGCCTCTCCTGGCCCTCTCCAGTGGCCGCGCTaGACACGCCGGCCCAGATGTCCACAGCCTCCACCA +
Preference number: 6 (lower is better)
Translates to: GSASPGPLQWPR*TRRPRCPQPPP
Trigger: TGGTGGAGGCTGTGGACATCTGGGCCGGCGTGTTCAGCGCGGCCACTGGAGAGGGCCAGGAGAGGCGCTCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp TCGCCACGAACACGCCGTCCGCCCGGCTCGCCGCGATaGCTCCGATGGCTTGCTCAGATCGCCACACCGGCT +
Preference number: 6 (lower is better)
Translates to: SPRTRRPPGSPR*LRWLAQIATPA
Trigger: AGCCGGTGTGGCGATCTGAGCAAGCCATCGGAGCCATCGCGGCGAGCCGGGCGGACGGCGTGTTCGTGGCGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp AGCGGTTCGCGGTCTCCGGCTCCGGCAGCACATAGGTaGCGGCCACCGCCAGGTACCAGAGGTCGGTGCCAC +
Preference number: 6 (lower is better)
Translates to: SGSRSPAPAAHR*RPPPGTRGRCH
Trigger: GTGGCACCGACCTCTGGTACCTGGCGGTGGCCGCCACCTATGTGCTGCCGGAGCCGGAGACCGCGAACCGCT
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp GAGGAAAGCAGTAGGCGGCGGCCCTCAGGGTGGCCGTaGTCGCAGTCGAGGGCAGCCTGGCCCTGGAACAGC +
Preference number: 6 (lower is better)
Translates to: EESSRRRPSGWP*SQSRAAWPWNS
Trigger: GCTGTTCCAGGGCCAGGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGGCCGCCGCCTACTGCTTTCCTC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp GACATGACACCACCTCGGTGCCGTTGCGCAGGGAGCTaGGGTTCAGGTTGCCCAGGGGCCGCACCTCGCAGG +
Preference number: 6 (lower is better)
Translates to: DMTPPRCRCAGS*GSGCPGAAPRR
Trigger: CCTGCGAGGTGCGGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCCGCACTACCGCGCAGTTTCAGGCGGCCCAGCTCCTaGGTGGCCAGACTGCGCCCCTCCGTGTTCTTGAGC +
Preference number: 6 (lower is better)
Translates to: PALPRSFRRPSS*VARLRPSVFLS
Trigger: GCTCAAGAACACGGAGGGGCGCAGTCTGGCCACGCAGGAGCTGGGCCGCCTGAAACTGCGCGGTAGTGCGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp CCCTCAGGGTGGCCGTGGTCGCAGTCGAGGGCAGCCTaGCCCTGGAACAGCACCTCTGTGCTCTGCGCGATG +
Preference number: 6 (lower is better)
Translates to: PSGWPWSQSRAA*PWNSTSVLCAM
Trigger: CATCGCGCAGAGCACAGAGGTGCTGTTCCAGGGCCAGGCTGCCCTCGACTGCGACCACGGCCACCCTGAGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp AGCGCGATAGCCGTGTCGCGATCGGATGCTGCGGGGTaGCAGCGGTTCGCGGTCTCCGGCTCCGGCAGCACA +
Preference number: 6 (lower is better)
Translates to: SAIAVSRSDAAG*QRFAVSGSGST
Trigger: TGTGCTGCCGGAGCCGGAGACCGCGAACCGCTGCAACCCCGCAGCATCCGATCGCGACACGGCTATCGCGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GCGCGGTACACCACACCAGCCGTCGAACCCTGCGGGTaGCATGACACCACCTCGGTGCCGTTGCGCAGGGAG +
Preference number: 6 (lower is better)
Translates to: ARYTTPAVEPCG*HDTTSVPLRRE
Trigger: CTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTGGTGTGGTGTACCGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp AACCCTGCGGGTGACATGACACCACCTCGGTGCCGTTaGGCAGGGAGCTGCGGTTCAGGTTGCCCAGGGGCC +
Preference number: 6 (lower is better)
Translates to: NPAGDMTPPRCR*AGSCGSGCPGA
Trigger: GGCCCCTGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CATAGGTGGCGGCCACCGCCAGGTACCAGAGGTCGGTaGCACTCGCGCGGTACACCACACCAGCCGTCGAAC +
Preference number: 6 (lower is better)
Translates to: HRWRPPPGTRGR*HSRGTPHQPSN
Trigger: GTTCGACGGCTGGTGTGGTGTACCGCGCGAGTGGCACCGACCTCTGGTACCTGGCGGTGGCCGCCACCTATG
68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp GTTCTTGAGCGCGATAGCCGTGTCGCGATCGGATGCTaGGGGGTTGCAGCGGTTCGCGGTCTCCGGCTCCGG +
Preference number: 6 (lower is better)
Translates to: VLERDSRVAIGC*GVAAVRGLRLR
Trigger: CCGGAGCCGGAGACCGCGAACCGCTGCAACCCCGCAGCATCCGATCGCGACACGGCTATCGCGCTCAAGAAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp GGAACAGCACCTCTGTGCTCTGCGCGATGCGCGCCATaGTGGGCCAGCCGGTGGCAGCGCCACTCGTGTAGT +
Preference number: 6 (lower is better)
Translates to: GTAPLCSARCAP*WASRWQRHSCS
Trigger: ACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGTTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GTACACCACACCAGCCGTCGAACCCTGCGGGTGACATaGCACCACCTCGGTGCCGTTGCGCAGGGAGCTGCG +
Preference number: 6 (lower is better)
Translates to: VHHTSRRTLRVT*HHLGAVAQGAA
Trigger: CGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGGCTGGTGTGGTGTAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCGTCGAACCCTGCGGGTGACATGACACCACCTCGGTaGCGTTGCGCAGGGAGCTGCGGTTCAGGTTGCCCA +
Preference number: 6 (lower is better)
Translates to: PSNPAGDMTPPR*RCAGSCGSGCP
Trigger: TGGGCAACCTGAACCGCAGCTCCCTGCGCAACGGCACCGAGGTGGTGTCATGTCACCCGCAGGGTTCGACGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CGTGTTCTTGAGCGCGATAGCCGTGTCGCGATCGGATaGTGCGGGGTTGCAGCGGTTCGCGGTCTCCGGCTC +
Preference number: 6 (lower is better)
Translates to: RVLERDSRVAIG*CGVAAVRGLRL
Trigger: GAGCCGGAGACCGCGAACCGCTGCAACCCCGCAGCATCCGATCGCGACACGGCTATCGCGCTCAAGAACACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp ACAGCACCTCTGTGCTCTGCGCGATGCGCGCCATGCTaGGCCAGCCGGTGGCAGCGCCACTCGTGTAGTTGT +
Preference number: 6 (lower is better)
Translates to: TAPLCSARCAPC*ASRWQRHSCSC
Trigger: ACAACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCACAGAGGTGCTGT
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp AGCTCCTGCGTGGCCAGACTGCGCCCCTCCGTGTTCTaGAGCGCGATAGCCGTGTCGCGATCGGATGCTGCG +
Preference number: 6 (lower is better)
Translates to: SSCVARLRPSVF*SAIAVSRSDAA
Trigger: CGCAGCATCCGATCGCGACACGGCTATCGCGCTCAAGAACACGGAGGGGCGCAGTCTGGCCACGCAGGAGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp TGCCGTTCCAGAGAAAGGCGTCCACGAAGTGCAGGCTaGCCGCACTACCGCGCAGTTTCAGGCGGCCCAGCT +
Preference number: 6 (lower is better)
Translates to: CRSRERRPRSAG*PHYRAVSGGPA
Trigger: AGCTGGGCCGCCTGAAACTGCGCGGTAGTGCGGGCAGCCTGCACTTCGTGGACGCCTTTCTCTGGAACGGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp GGCGCCAACGAGACGGGCTCCGTGCAGTTGCCCGCTTaGTCCCGGTATAGGCGAGAGAGCCTGTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: GANETGSVQLPA*SRYRRESLFFR
Trigger: CCTGAAGAACAGGCTCTCTCGCCTATACCGGGACCAAGCGGGCAACTGCACGGAGCCCGTCTCGTTGGCGCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp TGCTCTGCGCGATGCGCGCCATGCTGGGCCAGCCGGTaGCAGCGCCACTCGTGTAGTTGTAGGGATAGTAGG +
Preference number: 6 (lower is better)
Translates to: CSARCAPCWASR*QRHSCSCRDSR
Trigger: CCTACTATCCCTACAACTACACGAGTGGCGCTGCCACCGGCTGGCCCAGCATGGCGCGCATCGCGCAGAGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp TTGGCTTCTCCCCTGGCAGAGCAGCTTGCCCGTGTCTaGGTTCTTCACCACGCACTCCGAGTGTCTTGCGGA +
Preference number: 6 (lower is better)
Translates to: LASPLAEQLARV*VLHHALRVSCG
Trigger: TCCGCAAGACACTCGGAGTGCGTGGTGAAGAACGCAGACACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp AGGCCGATCCCCTTCTTTGCAGTTGTGCTCAGTCGCTaGAAAGTCCCAGCTGCAGCTCCTGGCGTGCGCCTG +
Preference number: 6 (lower is better)
Translates to: RPIPFFAVVLSR*KVPAAAPGVRL
Trigger: CAGGCGCACGCCAGGAGCTGCAGCTGGGACTTTCAAGCGACTGAGCACAACTGCAAAGAAGGGGATCGGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp GTCCAGTTCAGTTGGCTTCTCCCCTGGCAGAGCAGCTaGCCCGTGTCTGCGTTCTTCACCACGCACTCCGAG +
Preference number: 6 (lower is better)
Translates to: VQFSWLLPWQSS*PVSAFFTTHSE
Trigger: CTCGGAGTGCGTGGTGAAGAACGCAGACACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAACTGAACTGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp TCCAGTTCAGTTGGCTTCTCCCCTGGCAGAGCAGCTTaGCCGTGTCTGCGTTCTTCACCACGCACTCCGAGT +
Preference number: 6 (lower is better)
Translates to: SSSVGFSPGRAA*PCLRSSPRTPS
Trigger: ACTCGGAGTGCGTGGTGAAGAACGCAGACACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAACTGAACTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp CTGCTGGGGATATTGCAGGCACAGGTCCAGTTCAGTTaGCTTCTCCCCTGGCAGAGCAGCTTGCCCGTGTCT +
Preference number: 6 (lower is better)
Translates to: LLGILQAQVQFS*LLPWQSSLPVS
Trigger: AGACACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAACTGAACTGGACCTGTGCCTGCAATATCCCCAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp TCTGCTGGGGATATTGCAGGCACAGGTCCAGTTCAGTaGGCTTCTCCCCTGGCAGAGCAGCTTGCCCGTGTC +
Preference number: 6 (lower is better)
Translates to: SAGDIAGTGPVQ*ASPLAEQLARV
Trigger: GACACGGGCAAGCTGCTCTGCCAGGGGAGAAGCCAACTGAACTGGACCTGTGCCTGCAATATCCCCAGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CTTTGCAGTTGTGCTCAGTCGCTTGAAAGTCCCAGCTaGAGCTCCTGGCGTGCGCCTGGATCTCACTCATCC +
Preference number: 6 (lower is better)
Translates to: LCSCAQSLESPS*SSWRAPGSHSS
Trigger: GGATGAGTGAGATCCAGGCGCACGCCAGGAGCTGCAGCTGGGACTTTCAAGCGACTGAGCACAACTGCAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CAATTGGCTGGACCCGTTCAGGCCGATCCCCTTCTTTaGAGTTGTGCTCAGTCGCTTGAAAGTCCCAGCTGC +
Preference number: 6 (lower is better)
Translates to: QLAGPVQADPLL*SCAQSLESPSC
Trigger: GCAGCTGGGACTTTCAAGCGACTGAGCACAACTGCAAAGAAGGGGATCGGCCTGAACGGGTCCAGCCAATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CGGAGTTCGCTCTCCAGCAGCTCCAGCTGTTGGCTCTaGTTTCGACTGAGCTCCTTGGATTTGTACCTCGTC +
Preference number: 6 (lower is better)
Translates to: RSSLSSSSSCWL*FRLSSLDLYLV
Trigger: GACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCTGGAGAGCGAACTCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp GGGGTCCTCGAGGTATTGCAGCGTTCCACAGTCCAAGTAGGTGTCTaGGACCCTCAGCTTCACGGCCACGTTTGTACGTACTTTGGAGCT +
Preference number: 6 (lower is better)
Translates to: GVLEVLQRSTVQVGV*DPQLHGHVCTYFGA
Trigger: AGCTCCAAAGTACGTACAAACGTGGCCGTGAAGCTGAGGGTCCAAGACACCTACTTGGACTGTGGAACGCTGCAATACCTCGAGGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CAAAGCTCCCAGCATGTGTGCAATCCCCTTGAAAAGTaGACCTTTGTAACGGGAGGCACCAGCCACAGTGGG +
Preference number: 6 (lower is better)
Translates to: QSSQHVCNPLEK*TFVTGGTSHSG
Trigger: CCCACTGTGGCTGGTGCCTCCCGTTACAAAGGTGCACTTTTCAAGGGGATTGCACACATGCTGGGAGCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp ACTGCTCCATCAGGTCCCTGGTCAGCACCTCCAGGATaGTGGTCAGGTAGACCAGTTTGGTTTGCAGAGCAA +
Preference number: 6 (lower is better)
Translates to: TAPSGPWSAPPG*WSGRPVWFAEQ
Trigger: TTGCTCTGCAAACCAAACTGGTCTACCTGACCAGCATCCTGGAGGTGCTGACCAGGGACCTGATGGAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CGCCTCAGCATCAGCTTTGGTTGCATATTACTGCACTaGTCCATCAGGTCCCTGGTCAGCACCTCCAGGATG +
Preference number: 6 (lower is better)
Translates to: RLSISFGCILLH*SIRSLVSTSRM
Trigger: CATCCTGGAGGTGCTGACCAGGGACCTGATGGAGCAGTGCAGTAATATGCAACCAAAGCTGATGCTGAGGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp CGTCAGGTCAGAGTGGATCAGTGTAGACGATGCAATTaGCTGGACCCGTTCAGGCCGATCCCCTTCTTTGCA +
Preference number: 6 (lower is better)
Translates to: RQVRVDQCRRCN*LDPFRPIPFFA
Trigger: TGCAAAGAAGGGGATCGGCCTGAACGGGTCCAGCCAATTGCATCGTCTACACTGATCCACTCTGACCTGACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp CGCACTCCGAGTGTCTTGCGGAGATGCTTCCCACAATaGTCACTGTGGTTCTCTCTCGGAGGCTTCGAAGTA +
Preference number: 6 (lower is better)
Translates to: RTPSVLRRCFPQ*SLWFSLGGFEV
Trigger: TACTTCGAAGCCTCCGAGAGAGAACCACAGTGACCATTGTGGGAAGCATCTCCGCAAGACACTCGGAGTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp AGCTCCAGCTGTTGGCTCTGCTTTCGACTGAGCTCCTaGGATTTGTACCTCGTCACCACCACAGCCACAACG +
Preference number: 6 (lower is better)
Translates to: SSSCWLCFRLSS*DLYLVTTTATT
Trigger: CGTTGTGGCTGTGGTGGTGACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp CTCTCCAGCAGCTCCAGCTGTTGGCTCTGCTTTCGACTGAGCTCCTaGGATTTGTACCTCGTCACCACCACAGCCACAACGATGACAATG +
Preference number: 6 (lower is better)
Translates to: LSSSSSCWLCFRLSS*DLYLVTTTATTMTM
Trigger: CATTGTCATCGTTGTGGCTGTGGTGGTGACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCTGGAGCTGCTGGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp GGGACCTGCCAGAGTAGCCAGTCTTCGTTCAGGGTGTACAGCGCTTaGCAGGTGATCACGTCCACGGGACCCTTGTTTATTTTCTGGTTC +
Preference number: 6 (lower is better)
Translates to: GTCQSSQSSFRVYSA*QVITSTGPLFIFWF
Trigger: GAACCAGAAAATAAACAAGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGTACACCCTGAACGAAGACTGGCTACTCTGGCAGGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp TCGTGTAGTTGTAGGGATAGTAGGGGAAGTAGACACTaGCGTTCCAGAGAAAGGCGTCCACGAAGTGCAGGC +
Preference number: 6 (lower is better)
Translates to: SCSCRDSRGSRH*RSRERRPRSAG
Trigger: GCCTGCACTTCGTGGACGCCTTTCTCTGGAACGGCAGTGTCTACTTCCCCTACTATCCCTACAACTACACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp AGGTCAGAGTGGATCAGTGTAGACGATGCAATTGGCTaGACCCGTTCAGGCCGATCCCCTTCTTTGCAGTTG +
Preference number: 6 (lower is better)
Translates to: RSEWISVDDAIG*TRSGRSPSLQL
Trigger: CAACTGCAAAGAAGGGGATCGGCCTGAACGGGTCCAGCCAATTGCATCGTCTACACTGATCCACTCTGACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp GTTCCAAAGCTATCAACCACATCCAACTTATCCATCTaGAGCTCGGCAAAGCCGTCGCGGATCTCCTTCCGG +
Preference number: 6 (lower is better)
Translates to: VPKLSTTSNLSI*SSAKPSRISFR
Trigger: CCGGAAGGAGATCCGCGACGGCTTTGCCGAGCTCCAGATGGATAAGTTGGATGTGGTTGATAGCTTTGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp TTGGTTGCATATTACTGCACTGCTCCATCAGGTCCCTaGTCAGCACCTCCAGGATGCTGGTCAGGTAGACCA +
Preference number: 6 (lower is better)
Translates to: LVAYYCTAPSGP*SAPPGCWSGRP
Trigger: TGGTCTACCTGACCAGCATCCTGGAGGTGCTGACCAGGGACCTGATGGAGCAGTGCAGTAATATGCAACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp GAGGTATTGCAGCGTTCCACAGTCCAAGTAGGTGTCTaGGACCCTCAGCTTCACGGCCACGTTTGTACGTAC +
Preference number: 6 (lower is better)
Translates to: EVLQRSTVQVGV*DPQLHGHVCTY
Trigger: GTACGTACAAACGTGGCCGTGAAGCTGAGGGTCCAAGACACCTACTTGGACTGTGGAACGCTGCAATACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp CACTCGGTACCCTGTAAATCTGGGGTCCTCGAGGTATaGCAGCGTTCCACAGTCCAAGTAGGTGTCTTGGAC +
Preference number: 6 (lower is better)
Translates to: HSVPCKSGVLEV*QRSTVQVGVLD
Trigger: GTCCAAGACACCTACTTGGACTGTGGAACGCTGCAATACCTCGAGGACCCCAGATTTACAGGGTACCGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GCCAGTCTTCGTTCAGGGTGTACAGCGCTTTGCAGGTaGTCACGTCCACGGGACCCTTGTTTATTTTCTGGT +
Preference number: 6 (lower is better)
Translates to: ASLRSGCTALCR*SRPRDPCLFSG
Trigger: ACCAGAAAATAAACAAGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGTACACCCTGAACGAAGACTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCCCTGCAGACGAGCAGGTCCCACCGTCAAACTGGATaGAAACGTCTTTCATTTCTTTGCGGCTTGATGGAA +
Preference number: 6 (lower is better)
Translates to: PLQTSRSHRQTG*KRLSFLCGLME
Trigger: TTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGACCTGCTCGTCTGCAGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp AGAGCCCCTGCAGACGAGCAGGTCCCACCGTCAAACTaGATGCAAACGTCTTTCATTTCTTTGCGGCTTGAT +
Preference number: 6 (lower is better)
Translates to: RAPADEQVPPSN*MQTSFISLRLD
Trigger: ATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGACCTGCTCGTCTGCAGGGGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp TCAGCACCTCCAGGATGCTGGTCAGGTAGACCAGTTTaGTTTGCAGAGCAATGGTTAGGAAGGAGGCGAAGA +
Preference number: 6 (lower is better)
Translates to: SAPPGCWSGRPV*FAEQWLGRRRR
Trigger: TCTTCGCCTCCTTCCTAACCATTGCTCTGCAAACCAAACTGGTCTACCTGACCAGCATCCTGGAGGTGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp AGCTGTTGGCTCTGCTTTCGACTGAGCTCCTTGGATTaGTACCTCGTCACCACCACAGCCACAACGATGACA +
Preference number: 6 (lower is better)
Translates to: SCWLCFRLSSLD*YLVTTTATTMT
Trigger: TGTCATCGTTGTGGCTGTGGTGGTGACGAGGTACAAATCCAAGGAGCTCAGTCGAAAGCAGAGCCAACAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp CAGAGTAGCCAGTCTTCGTTCAGGGTGTACAGCGCTTaGCAGGTGATCACGTCCACGGGACCCTTGTTTATT +
Preference number: 6 (lower is better)
Translates to: QSSQSSFRVYSA*QVITSTGPLFI
Trigger: AATAAACAAGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGTACACCCTGAACGAAGACTGGCTACTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp CAGTTTTCAAAGCTCCCAGCATGTGTGCAATCCCCTTaGAAAGTGCACCTTTGTAACGGGAGGCACCAGCCA +
Preference number: 6 (lower is better)
Translates to: QFSKLPACVQSP*KVHLCNGRHQP
Trigger: TGGCTGGTGCCTCCCGTTACAAAGGTGCACTTTTCAAGGGGATTGCACACATGCTGGGAGCTTTGAAAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp TCAATGTCCAGGAGTTCTTTCTGCCGTGTTCCCACCTaGAGCTCAAGACCAATCTCATTGAGCTGGAGTCCG +
Preference number: 6 (lower is better)
Translates to: SMSRSSFCRVPT*SSRPISLSWSP
Trigger: CGGACTCCAGCTCAATGAGATTGGTCTTGAGCTTCAGGTGGGAACACGGCAGAAAGAACTCCTGGACATTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp TCCCCAAGAACAGAACAGTCCTGTTCATCACCACGGTaGCATAAACAGACGTCAGGTCAGAGTGGATCAGTG +
Preference number: 6 (lower is better)
Translates to: SPRTEQSCSSPR*HKQTSGQSGSV
Trigger: CACTGATCCACTCTGACCTGACGTCTGTTTATGGCACCGTGGTGATGAACAGGACTGTTCTGTTCTTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp ACGACATTTAATGCCACAGTGTTGAATTCGGGGACCTaGCAGAGTAGCCAGTCTTCGTTCAGGGTGTACAGC +
Preference number: 6 (lower is better)
Translates to: TTFNATVLNSGT*QSSQSSFRVYS
Trigger: GCTGTACACCCTGAACGAAGACTGGCTACTCTGGCAGGTCCCCGAATTCAACACTGTGGCATTAAATGTCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp TATTTTCTGGTTCAGGGTCGTCACCAGCAAATAGAATaGCTCTCCAACAGTCTCCCGGAGGAAACCGGAGAG +
Preference number: 6 (lower is better)
Translates to: YFLVQGRHQQIE*LSNSLPEETGE
Trigger: CTCTCCGGTTTCCTCCGGGAGACTGTTGGAGAGCCATTCTATTTGCTGGTGACGACCCTGAACCAGAAAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp TACAGCGCTTTGCAGGTGATCACGTCCACGGGACCCTaGTTTATTTTCTGGTTCAGGGTCGTCACCAGCAAA +
Preference number: 6 (lower is better)
Translates to: YSALQVITSTGP*FIFWFRVVTSK
Trigger: TTTGCTGGTGACGACCCTGAACCAGAAAATAAACAAGGGTCCCGTGGACGTGATCACCTGCAAAGCGCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GCAGGTACTGGTTCCTCGCAGGATCATGGTGATATTTaGCGCCTGGGTGAAGTTTGCTCCAGTAACAATCAC +
Preference number: 6 (lower is better)
Translates to: AGTGSSQDHGDI*RLGEVCSSNNH
Trigger: GTGATTGTTACTGGAGCAAACTTCACCCAGGCGTCAAATATCACCATGATCCTGCGAGGAACCAGTACCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp TGGATTTGTACCTCGTCACCACCACAGCCACAACGATaGCAATGGCCAGCAAGATTGGAAGCGCGATTAGAA +
Preference number: 6 (lower is better)
Translates to: WICTSSPPQPQR*QWPARLEARLE
Trigger: TTCTAATCGCGCTTCCAATCTTGCTGGCCATTGTCATCGTTGTGGCTGTGGTGGTGACGAGGTACAAATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp GCGAAGAGACACCTGTCCTTTACTGAGAAGTTCTTCTaGTTCTCCAGGGTATGGATGACGGTAACCAGGAAG +
Preference number: 6 (lower is better)
Translates to: AKRHLSFTEKFF*FSRVWMTVTRK
Trigger: CTTCCTGGTTACCGTCATCCATACCCTGGAGAAGCAGAAGAACTTCTCAGTAAAGGACAGGTGTCTCTTCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GGCTTGGCCTATGGTATCGCAGTCAAGAACGTTGACTaGAATATTCCGGCAGACATCTGCACTCTCGTTTTC +
Preference number: 6 (lower is better)
Translates to: GLAYGIAVKNVD*NIPADICTLVF
Trigger: GAAAACGAGAGTGCAGATGTCTGCCGGAATATTTCAGTCAACGTTCTTGACTGCGATACCATAGGCCAAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp CTTTGGCTTGGCCTATGGTATCGCAGTCAAGAACGTTaGCTGAAATATTCCGGCAGACATCTGCACTCTCGT +
Preference number: 6 (lower is better)
Translates to: LWLGLWYRSQER*LKYSGRHLHSR
Trigger: ACGAGAGTGCAGATGTCTGCCGGAATATTTCAGTCAACGTTCTTGACTGCGATACCATAGGCCAAGCCAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GCCGTGTTCCCACCTGAAGCTCAAGACCAATCTCATTaGGCTGGAGTCCGTATGGAGAACCATTTTTGCTTA +
Preference number: 6 (lower is better)
Translates to: AVFPPEAQDQSH*AGVRMENHFCL
Trigger: TAAGCAAAAATGGTTCTCCATACGGACTCCAGCTCAATGAGATTGGTCTTGAGCTTCAGGTGGGAACACGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CCGCTGCTAAGCACTCTGAACAGGATTTCCGTTTACTaGAGTTTGCAACAGGAATTCTTCTCACCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: PLLSTLNRISVY*SLQQEFFSPPS
Trigger: GGAAGGAGGTGAGAAGAATTCCTGTTGCAAACTGCAGTAAACGGAAATCCTGTTCAGAGTGCTTAGCAGCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp ATGACGTCAAAATTTCTGCCCATGATGGTTATGTTTTaGCCACCGCTGATCCAGGTGGTGGCAGGAACTATC +
Preference number: 6 (lower is better)
Translates to: MTSKFLPMMVMF*PPLIQVVAGTI
Trigger: GATAGTTCCTGCCACCACCTGGATCAGCGGTGGGCAAAACATAACCATCATGGGCAGAAATTTTGACGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp AGTGTCTTGCGGAGATGCTTCCCACAATGGTCACTGTaGTTCTCTCTCGGAGGCTTCGAAGTATCTGAATTT +
Preference number: 6 (lower is better)
Translates to: SVLRRCFPQWSL*FSLGGFEVSEF
Trigger: AAATTCAGATACTTCGAAGCCTCCGAGAGAGAACCACAGTGACCATTGTGGGAAGCATCTCCGCAAGACACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp GGAAGTGAGAATTTCATATGCGTGTCATTTAGCACATaGCTAACCCGGATCACATCCCTCTCGCAGGTACTG +
Preference number: 6 (lower is better)
Translates to: GSENFICVSFST*LTRITSLSQVL
Trigger: CAGTACCTGCGAGAGGGATGTGATCCGGGTTAGCCATGTGCTAAATGACACGCATATGAAATTCTCACTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp GATGACGTCAAAATTTCTGCCCATGATGGTTATGTTTaGCCCACCGCTGATCCAGGTGGTGGCAGGAACTAT +
Preference number: 6 (lower is better)
Translates to: DDVKISAHDGYV*PTADPGGGRNY
Trigger: ATAGTTCCTGCCACCACCTGGATCAGCGGTGGGCAAAACATAACCATCATGGGCAGAAATTTTGACGTCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp TGGACCCTCAGCTTCACGGCCACGTTTGTACGTACTTaGGAGCTCTTTAAATTAGGAGCTAGAAACCTGCAG +
Preference number: 6 (lower is better)
Translates to: WTLSFTATFVRT*ELFKLGARNLQ
Trigger: CTGCAGGTTTCTAGCTCCTAATTTAAAGAGCTCCAAAGTACGTACAAACGTGGCCGTGAAGCTGAGGGTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp CAGCCGCTTCTGATACACGCCGGGCATTCTTTTAATGACGCACAGTaGGTGAAGTTGAATCTTTCTGATAAGTTCCAAGACGGAAAGGAG +
Preference number: 6 (lower is better)
Translates to: QPLLIHAGHSFNDAQ*VKLNLSDKFQDGKE
Trigger: CTCCTTTCCGTCTTGGAACTTATCAGAAAGATTCAACTTCACCAACTGTGCGTCATTAAAAGAATGCCCGGCGTGTATCAGAAGCGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099337.5
ENSMUST00000181244.2
CDS TCA 72 bp CTGATAAGTTCCAAGACGGAAAGGAGAAGGTCGCATTaGCAACTAAGACATTATAGCTGGGTCTGCTGGGGA +
Preference number: 6 (lower is better)
Translates to: LISSKTERRRSH*QLRHYSWVCWG
Trigger: TCCCCAGCAGACCCAGCTATAATGTCTTAGTTGTCAATGCGACCTTCTCCTTTCCGTCTTGGAACTTATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp CTGATACACGCCGGGCATTCTTTTAATGACGCACAGTTGGTGAAGTaGAATCTTTCTGATAAGTTCCAAGACGGAAAGGAGAAGGTCGCA +
Preference number: 6 (lower is better)
Translates to: LIHAGHSFNDAQLVK*NLSDKFQDGKEKVA
Trigger: TGCGACCTTCTCCTTTCCGTCTTGGAACTTATCAGAAAGATTCAACTTCACCAACTGTGCGTCATTAAAAGAATGCCCGGCGTGTATCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099337.5
ENSMUST00000181244.2
CDS CAA 90 bp GAGCAGGTCCCACCGTCAAACTGGATGCAAACGTCTTTCATTTCTTaGCGGCTTGATGGAAGTGAGAATTTCATATGCGTGTCATTTAGC +
Preference number: 6 (lower is better)
Translates to: EQVPPSNWMQTSFIS*RLDGSENFICVSFS
Trigger: GCTAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGACCTGCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp CTGATAAGTTCCAAGACGGAAAGGAGAAGGTCGCATTaGCAACTAAGACATCTAAGAAACCCTGAACGCCGT +
Preference number: 6 (lower is better)
Translates to: LISSKTERRRSH*QLRHLRNPERR
Trigger: ACGGCGTTCAGGGTTTCTTAGATGTCTTAGTTGTCAATGCGACCTTCTCCTTTCCGTCTTGGAACTTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS CAA 90 bp TCCCACCGTCAAACTGGATGCAAACGTCTTTCATTTCTTTGCGGCTaGATGGAAGTGAGAATTTCATATGCGTGTCATTTAGCACATGGC +
Preference number: 6 (lower is better)
Translates to: SHRQTGCKRLSFLCG*MEVRISYACHLAHG
Trigger: GCCATGTGCTAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GGCCCAATGATCTCCTTGGAGTCACCTACTGTCAAGTaGAGGTGTTCTGGTTTGCTTCTGAAAACCTTATTA +
Preference number: 6 (lower is better)
Translates to: GPMISLESPTVK*RCSGLLLKTLL
Trigger: TAATAAGGTTTTCAGAAGCAAACCAGAACACCTTCACTTGACAGTAGGTGACTCCAAGGAGATCATTGGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS CCA 72 bp CTCCTTGGAGTCACCTACTGTCAAGTGAAGGTGTTCTaGTTTGCTTCTGAAAACCTTATTATAGCTGGGTCT +
Preference number: 6 (lower is better)
Translates to: LLGVTYCQVKVF*FASENLIIAGS
Trigger: AGACCCAGCTATAATAAGGTTTTCAGAAGCAAACCAGAACACCTTCACTTGACAGTAGGTGACTCCAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181244.2
CDS CAA 72 bp TTTGCGTTTCCCTTCAGCTCGTGTGAAATGATGAGGTaGTCGATGACGTCAAAATTTCTGCCCATGATGGTT +
Preference number: 6 (lower is better)
Translates to: FAFPFSSCEMMR*SMTSKFLPMMV
Trigger: AACCATCATGGGCAGAAATTTTGACGTCATCGACAACCTCATCATTTCACACGAGCTGAAGGGAAACGCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp TCCAGAAAGTCAAAGAAGTATTTTATAGCAAATGGGGCCCTGCTATaGGGCAAACTCCAAATGCTTCGGAAGAGTTTCTCAAGCACAGAG +
Preference number: 6 (lower is better)
Translates to: SRKSKKYFIANGALL*GKLQMLRKSFSSTE
Trigger: CTCTGTGCTTGAGAAACTCTTCCGAAGCATTTGGAGTTTGCCCAATAGCAGGGCCCCATTTGCTATAAAATACTTCTTTGACTTTCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp GAGAGAAAAGGCATCCATGAATGCTTGGGCAATCACTaGCAAACAGCTGTCTATGTGTGGTGTCTTCTTAAT +
Preference number: 6 (lower is better)
Translates to: ERKGIHECLGNH*QTAVYVWCLLN
Trigger: ATTAAGAAGACACCACACATAGACAGCTGTTTGTCAGTGATTGCCCAAGCATTCATGGATGCCTTTTCTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp ATTTCTTTGCGGCTTGATGGAAGTGAGAATTTCATATaGGTGTCATTTAGCACATGGCTAACCCGGATCACA +
Preference number: 6 (lower is better)
Translates to: ISLRLDGSENFI*VSFSTWLTRIT
Trigger: TGTGATCCGGGTTAGCCATGTGCTAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS GCA 72 bp CACCGTCAAACTGGATGCAAACGTCTTTCATTTCTTTaGGGCTTGATGGAAGTGAGAATTTCATATGCGTGT +
Preference number: 6 (lower is better)
Translates to: HRQTGCKRLSFL*GLMEVRISYAC
Trigger: ACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTGACGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp CTGATACACGCCGGGCATTCTTTTAATGACGCACAGTaGGTGAAGTTGAATCTTTCTGATAAGTTCCAAGAC +
Preference number: 6 (lower is better)
Translates to: LIHAGHSFNDAQ*VKLNLSDKFQD
Trigger: GTCTTGGAACTTATCAGAAAGATTCAACTTCACCAACTGTGCGTCATTAAAAGAATGCCCGGCGTGTATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099337.5
ENSMUST00000181244.2
CDS CAA 90 bp ATGTTCACATTTGCGTTTCCCTTCAGCTCGTGTGAAATGATGAGGTaGTCGATGACGTCAAAATTTCTGCCCATGATGGTTATGTTTTGC +
Preference number: 6 (lower is better)
Translates to: MFTFAFPFSSCEMMR*SMTSKFLPMMVMFC
Trigger: GCAAAACATAACCATCATGGGCAGAAATTTTGACGTCATCGACAACCTCATCATTTCACACGAGCTGAAGGGAAACGCAAATGTGAACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp TCGACAGCAGCTTGGTCAGATACATTTCTTTTACTTTaGACTTGTGTTTCCCTCGATGTCTCTTCCCTTGAA +
Preference number: 6 (lower is better)
Translates to: STAAWSDTFLLL*TCVSLDVSSLE
Trigger: TTCAAGGGAAGAGACATCGAGGGAAACACAAGTTCAAAGTAAAAGAAATGTATCTGACCAAGCTGCTGTCGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp AAGACTTCACTTCCTCTTTGTAGGTTGGTATATCCTTaGCATAGAGAAGTTTATTGGTTGGTGCTTCCTTCC +
Preference number: 6 (lower is better)
Translates to: KTSLPLCRLVYP*HREVYWLVLPS
Trigger: GGAAGGAAGCACCAACCAATAAACTTCTCTATGCCAAGGATATACCAACCTACAAAGAGGAAGTGAAGTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp CTAGCGATGGTGTTTGCATTCTTGATACTCTTGATCTaGCAAAGGATGGTTGTGAGATCCTGGTTTCTAGTA +
Preference number: 6 (lower is better)
Translates to: LAMVFAFLILLI*QRMVVRSWFLV
Trigger: TACTAGAAACCAGGATCTCACAACCATCCTTTGCAAGATCAAGAGTATCAAGAATGCAAACACCATCGCTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp TCAAAGAAGTATTTTATAGCAAATGGGGCCCTGCTATaGGGCAAACTCCAAATGCTTCGGAAGAGTTTCTCA +
Preference number: 6 (lower is better)
Translates to: SKKYFIANGALL*GKLQMLRKSFS
Trigger: TGAGAAACTCTTCCGAAGCATTTGGAGTTTGCCCAATAGCAGGGCCCCATTTGCTATAAAATACTTCTTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 90 bp TTAGAGGAGCTAGCGATGGTGTTTGCATTCTTGATACTCTTGATCTaGCAAAGGATGGTTGTGAGATCCTGGTTTCTAGTAATATTTTCA +
Preference number: 6 (lower is better)
Translates to: LEELAMVFAFLILLI*QRMVVRSWFLVIFS
Trigger: TGAAAATATTACTAGAAACCAGGATCTCACAACCATCCTTTGCAAGATCAAGAGTATCAAGAATGCAAACACCATCGCTAGCTCCTCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS TCA 72 bp ATTTATGTTCACATTTGCGTTTCCCTTCAGCTCGTGTaGAATGATGAGGTTGTCGATGACGTCAAAATTTCT +
Preference number: 6 (lower is better)
Translates to: IYVHICVSLQLV*NDEVVDDVKIS
Trigger: AGAAATTTTGACGTCATCGACAACCTCATCATTTCACACGAGCTGAAGGGAAACGCAAATGTGAACATAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CCA 72 bp CATTTGATATCTCATAGTGGCCAATGGTGTTTAGCTTaGTTATTCCATCTTCAAGAATCACAGAGGAACTGT +
Preference number: 6 (lower is better)
Translates to: HLISHSGQWCLA*LFHLQESQRNC
Trigger: ACAGTTCCTCTGTGATTCTTGAAGATGGAATAACCAAGCTAAACACCATTGGCCACTATGAGATATCAAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5
CDS CAA 72 bp CAAACTGGATGCAAACGTCTTTCATTTCTTTGCGGCTaGATGGAAGTGAGAATTTCATATGCGTGTCATTTA +
Preference number: 6 (lower is better)
Translates to: QTGCKRLSFLCG*MEVRISYACHL
Trigger: TAAATGACACGCATATGAAATTCTCACTTCCATCAAGCCGCAAAGAAATGAAAGACGTTTGCATCCAGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099337.5