RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLXNA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026640

Ensembl transcript IDs: ENSMUST00000027952.12, ENSMUST00000135664.2

Found 464 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCATTCAGCTCAGACCTAGGAGGCCTGGTCTGTGCAGTCCCCAGGTaGCTGGCTTGTGGGTCTCTTTTCAGAGTCCTTAAGGAGGAGGTG +
Preference number: 1 (lower is better)
Translates to: PFSSDLGGLVCAVPR*LACGSLFRVLKEEV
Trigger: CACCTCCTCCTTAAGGACTCTGAAAAGAGACCCACAAGCCAGGCACCTGGGGACTGCACAGACCAGGCCTCCTAGGTCTGAGCTGAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp CTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCCCATaGCCTAGGTCCCTGAAGCCACTTTGCATTTCCTCACCCTCCTGG +
Preference number: 1 (lower is better)
Translates to: LTTSSSLLPTIRSAP*PRSLKPLCISSPSW
Trigger: CCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGGGACCTAGGGCATGGGGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp GTCCTGCTACAACAGAGCTTGCCTCTGGGCCCAAGGATGGAGCCTTaGCCTCTGCTTGGAAGCTATACTCAGGAAGGCTGGCCATCTATG +
Preference number: 1 (lower is better)
Translates to: VLLQQSLPLGPRMEP*PLLGSYTQEGWPSM
Trigger: CATAGATGGCCAGCCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTGTAGCAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp AAAGGGCCACCTTCTCCTTGCCCGTTGTGTCCTGAGCTCACACTGTaGTGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGAT +
Preference number: 1 (lower is better)
Translates to: KGPPSPCPLCPELTL*WVVFTVLLEGTGCD
Trigger: ATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACAGTGTGAGCTCAGGACACAACGGGCAAGGAGAAGGTGGCCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp GTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATaGCTGCCATTGACAGAGGAGCCTTTCCTTCTTCCGTCAGTGAGG +
Preference number: 1 (lower is better)
Translates to: VVFTVLLEGTGCDET*LPLTEEPFLLPSVR
Trigger: CCTCACTGACGGAAGAAGGAAAGGCTCCTCTGTCAATGGCAGCCATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp GGTGAGCAATCTCAGAGAAGTCCAAGCCCAGGTTCACGCCATGGATaGTCACACGAGTCCCTCCTTCAGGTGGTCCTGATACTGTCAAAA +
Preference number: 1 (lower is better)
Translates to: GEQSQRSPSPGSRHG*SHESLLQVVLILSK
Trigger: TTTTGACAGTATCAGGACCACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGAGATTGCTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR TCA 90 bp TCTCCATACTCTCCAAACATCTTCAGTGAAGCATGCCAGAGGCAGTaGACGGGTACCATAAGTGGCTGCTGGGATATACCAGGTAGGCAC +
Preference number: 1 (lower is better)
Translates to: SPYSPNIFSEACQRQ*TGTISGCWDIPGRH
Trigger: GTGCCTACCTGGTATATCCCAGCAGCCACTTATGGTACCCGTTCACTGCCTCTGGCATGCTTCACTGAAGATGTTTGGAGAGTATGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp TACAGATTCCAGTGTGTCATGGGGAAAGGTCTGAGTAGGAGAGGATaGGGAGAGGCAGCTTGGCTCAAGGCCTTCATGTGCCTGCATAAA +
Preference number: 1 (lower is better)
Translates to: YRFQCVMGKGLSRRG*GEAAWLKAFMCLHK
Trigger: TTTATGCAGGCACATGAAGGCCTTGAGCCAAGCTGCCTCTCCTCATCCTCTCCTACTCAGACCTTTCCCCATGACACACTGGAATCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp CAGTTGCATCTGGCTGTGGTGGGATTCAGGTCTTCCTGGCTTATTTaGCAAATGGTTAGTACGAACTTCTGCTCCTTCCTGCCTCTCCTC +
Preference number: 1 (lower is better)
Translates to: QLHLAVVGFRSSWLI*QMVSTNFCSFLPLL
Trigger: GAGGAGAGGCAGGAAGGAGCAGAAGTTCGTACTAACCATTTGGCAAATAAGCCAGGAAGACCTGAATCCCACCACAGCCAGATGCAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp CTTCTTCCGTCAGTGAGGTTTCAGAGGATAGCCAGCTCTGGGGTCTaGTACCCTTCACTCATCCCATCTTTCCTTTTGAGAAGCCAGTGT +
Preference number: 1 (lower is better)
Translates to: LLPSVRFQRIASSGV*YPSLIPSFLLRSQC
Trigger: ACACTGGCTTCTCAAAAGGAAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAACCTCACTGACGGAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp GGTGTTCTCACAGGTCCTTGTTGGGTACTTCCTCCTCTTAGGAGATaGGGATACACAAGGGCACAGCACAGAAGGCAGTTTCCTATTAGC +
Preference number: 1 (lower is better)
Translates to: GVLTGPCWVLPPLRR*GYTRAQHRRQFPIS
Trigger: GCTAATAGGAAACTGCCTTCTGTGCTGTGCCCTTGTGTATCCTCATCTCCTAAGAGGAGGAAGTACCCAACAAGGACCTGTGAGAACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp TGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACATCTTCAGTaGAGCATGCCAGAGGCAGTGAACGGGTACCATAAGTGGCTGCTG +
Preference number: 1 (lower is better)
Translates to: CSLPIILSILSKHLQ*SMPEAVNGYHKWLL
Trigger: CAGCAGCCACTTATGGTACCCGTTCACTGCCTCTGGCATGCTTCACTGAAGATGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp TTCAGGTCTTCCTGGCTTATTTGCCAAATGGTTAGTACGAACTTCTaGTCCTTCCTGCCTCTCCTCCTTCCTCTCAGTTCAAGGGAGAGG +
Preference number: 1 (lower is better)
Translates to: FRSSWLICQMVSTNF*SFLPLLLPLSSRER
Trigger: CCTCTCCCTTGAACTGAGAGGAAGGAGGAGAGGCAGGAAGGAGCAGAAGTTCGTACTAACCATTTGGCAAATAAGCCAGGAAGACCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp GCCTTTCCTTCTTCCGTCAGTGAGGTTTCAGAGGATAGCCAGCTCTaGGGTCTGATACCCTTCACTCATCCCATCTTTCCTTTTGAGAAG +
Preference number: 1 (lower is better)
Translates to: AFPSSVSEVSEDSQL*GLIPFTHPIFPFEK
Trigger: CTTCTCAAAAGGAAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAACCTCACTGACGGAAGAAGGAAAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp CACATCCATGGTTTCATGACAGACAGAGATGATGGTCATTTCTACTaGGGCAAACGCAGATGCCCAGTTGGTCAGGGGCTTCTGGTTATG +
Preference number: 1 (lower is better)
Translates to: HIHGFMTDRDDGHFY*GKRRCPVGQGLLVM
Trigger: CATAACCAGAAGCCCCTGACCAACTGGGCATCTGCGTTTGCCTCAGTAGAAATGACCATCATCTCTGTCTGTCATGAAACCATGGATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp TCTGATCAGCTTCTGCAATTTCCACAAAGGCCTGAAGTTCTCAGTTaGATCTGGCTGTGGTGGGATTCAGGTCTTCCTGGCTTATTTGCC +
Preference number: 1 (lower is better)
Translates to: SDQLLQFPQRPEVLS*IWLWWDSGLPGLFA
Trigger: GGCAAATAAGCCAGGAAGACCTGAATCCCACCACAGCCAGATGCAACTGAGAACTTCAGGCCTTTGTGGAAATTGCAGAAGCTGATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp TACATTCCATGGAAGCCGCCTTCTTGGCTTTTCTTCTTTGCCCTGTaGAGGCAGTCAGATCTGGTGAGCAGAATCTCAGATACTGGAATC +
Preference number: 1 (lower is better)
Translates to: YIPWKPPSWLFFFAL*RQSDLVSRISDTGI
Trigger: GATTCCAGTATCTGAGATTCTGCTCACCAGATCTGACTGCCTGCACAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCATGGAATGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp GTGAGCCTGTGCAAGGCAGGAGACTCTCTATTTTGTTTATTGTGTTaGGGCCTGTCTGACAGGCATTGGCCTTGCTTGTCTCTTGTAACA +
Preference number: 1 (lower is better)
Translates to: VSLCKAGDSLFCLLC*GLSDRHWPCLSLVT
Trigger: TGTTACAAGAGACAAGCAAGGCCAATGCCTGTCAGACAGGCCTCAACACAATAAACAAAATAGAGAGTCTCCTGCCTTGCACAGGCTCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp AGACAGCTATCTGAAGATATATACATTCCATGGAAGCCGCCTTCTTaGCTTTTCTTCTTTGCCCTGTGCAGGCAGTCAGATCTGGTGAGC +
Preference number: 1 (lower is better)
Translates to: RQLSEDIYIPWKPPS*LFFFALCRQSDLVS
Trigger: GCTCACCAGATCTGACTGCCTGCACAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCATGGAATGTATATATCTTCAGATAGCTGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp GCTTGTCCCTTTCTCTCCCATACATTCAGGAACTTTGGTCCTGTTTaGTGGGGACCACACTTCTTTATGCGTGGATGTCAAAATGGAGAC +
Preference number: 1 (lower is better)
Translates to: ACPFLSHTFRNFGPV*WGPHFFMRGCQNGD
Trigger: GTCTCCATTTTGACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp CCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTCCTTTTaGGAAGCCAGTGTGATAGCTTATATGAGTCTCTCTTCCAAGAAC +
Preference number: 1 (lower is better)
Translates to: PALGSDTLHSSHLSF*EASVIAYMSLSSKN
Trigger: GTTCTTGGAAGAGAGACTCATATAAGCTATCACACTGGCTTCTCAAAAGGAAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp CAGAATCTCAGATACTGGAATCAACTGGAAAAATCAGCTGAGGCCTaGGTTAATTGTGAAGGAAGTAACCCAGGGCCAGTCTCTGTTGGG +
Preference number: 1 (lower is better)
Translates to: QNLRYWNQLEKSAEA*VNCEGSNPGPVSVG
Trigger: CCCAACAGAGACTGGCCCTGGGTTACTTCCTTCACAATTAACTCAGGCCTCAGCTGATTTTTCCAGTTGATTCCAGTATCTGAGATTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp AGATATATACATTCCATGGAAGCCGCCTTCTTGGCTTTTCTTCTTTaGCCTGTGCAGGCAGTCAGATCTGGTGAGCAGAATCTCAGATAC +
Preference number: 1 (lower is better)
Translates to: RYIHSMEAAFLAFLL*PVQAVRSGEQNLRY
Trigger: GTATCTGAGATTCTGCTCACCAGATCTGACTGCCTGCACAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCATGGAATGTATATATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp CAATTTCCACAAAGGCCTGAAGTTCTCAGTTGCATCTGGCTGTGGTaGGATTCAGGTCTTCCTGGCTTATTTGCCAAATGGTTAGTACGA +
Preference number: 1 (lower is better)
Translates to: QFPQRPEVLSCIWLW*DSGLPGLFAKWLVR
Trigger: TCGTACTAACCATTTGGCAAATAAGCCAGGAAGACCTGAATCCCACCACAGCCAGATGCAACTGAGAACTTCAGGCCTTTGTGGAAATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp GGTGCCTGGCTTGTGGGTCTCTTTTCAGAGTCCTTAAGGAGGAGGTaGCTGTTCTATGAAAGCCTCATCTCTTCAGTTTCTGATATCAAT +
Preference number: 1 (lower is better)
Translates to: GAWLVGLFSESLRRR*LFYESLISSVSDIN
Trigger: ATTGATATCAGAAACTGAAGAGATGAGGCTTTCATAGAACAGCCACCTCCTCCTTAAGGACTCTGAAAAGAGACCCACAAGCCAGGCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp TGTCCCTTTCTCTCCCATACATTCAGGAACTTTGGTCCTGTTTGGTaGGGACCACACTTCTTTATGCGTGGATGTCAAAATGGAGACCAA +
Preference number: 1 (lower is better)
Translates to: CPFLSHTFRNFGPVW*GPHFFMRGCQNGDQ
Trigger: TTGGTCTCCATTTTGACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp GGATGTCAAAATGGAGACCAAGCGTGTCAAAATGATGACCTTGACTaGGTCTCAAAGAAGCTTCTTACTGCCTTCTCTGTGTTCCTAGGG +
Preference number: 1 (lower is better)
Translates to: GCQNGDQACQNDDLD*VSKKLLTAFSVFLG
Trigger: CCCTAGGAACACAGAGAAGGCAGTAAGAAGCTTCTTTGAGACTCAGTCAAGGTCATCATTTTGACACGCTTGGTCTCCATTTTGACATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp TTCCTGAGTATTTTGCTGAATGCTTTTCTCTCTCCACTTGTCAGTTaGATTCAGGCAAGAAACAAGCTGAACAGCCCAGACAGCTTCAGC +
Preference number: 1 (lower is better)
Translates to: FLSILLNAFLSPLVS*IQARNKLNSPDSFS
Trigger: GCTGAAGCTGTCTGGGCTGTTCAGCTTGTTTCTTGCCTGAATGCAACTGACAAGTGGAGAGAGAAAAGCATTCAGCAAAATACTCAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp TTGAGATTCAAACCACAGAAAGAGGTAGAACATCAGACACAGAAGTaGCTGATCCACACAGAAGGCAAGAGGTGTTGTTCAGTTGAGGGA +
Preference number: 1 (lower is better)
Translates to: LRFKPQKEVEHQTQK*LIHTEGKRCCSVEG
Trigger: TCCCTCAACTGAACAACACCTCTTGCCTTCTGTGTGGATCAGGCACTTCTGTGTCTGATGTTCTACCTCTTTCTGTGGTTTGAATCTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp CTTCAGCTATATGTGAGACAGCTATCTGAAGATATATACATTCCATaGAAGCCGCCTTCTTGGCTTTTCTTCTTTGCCCTGTGCAGGCAG +
Preference number: 1 (lower is better)
Translates to: LQLYVRQLSEDIYIP*KPPSWLFFFALCRQ
Trigger: CTGCCTGCACAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCATGGAATGTATATATCTTCAGATAGCTGTCTCACATATAGCTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 90 bp CAACTCATGGAATCCTTAGCAAAGTGTCTAGACTATCTTTCAGGTTaGCCCTTCTCCCTTCATCTACATTCTTTGATTTGCTCTCTTCCC +
Preference number: 1 (lower is better)
Translates to: QLMESLAKCLDYLSG*PFSLHLHSLICSLP
Trigger: GGGAAGAGAGCAAATCAAAGAATGTAGATGAAGGGAGAAGGGCCAACCTGAAAGATAGTCTAGACACTTTGCTAAGGATTCCATGAGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 90 bp AAACTAAAGCAAAGAACTGGTGGAATGATAGGTAGAAAGCTAAAATaGGAGCAAGACTCTACAATAACTCACCCTCCTGGCATGGCATGG +
Preference number: 1 (lower is better)
Translates to: KLKQRTGGMIGRKLK*EQDSTITHPPGMAW
Trigger: CCATGCCATGCCAGGAGGGTGAGTTATTGTAGAGTCTTGCTCTCATTTTAGCTTTCTACCTATCATTCCACCAGTTCTTTGCTTTAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 90 bp TATCTTTCAGGTTGGCCCTTCTCCCTTCATCTACATTCTTTGATTTaGTCTCTTCCCATCATTCTCTCCATACTCTCCAAACATCTTCAG +
Preference number: 1 (lower is better)
Translates to: YLSGWPFSLHLHSLI*SLPIILSILSKHLQ
Trigger: CTGAAGATGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATGAAGGGAGAAGGGCCAACCTGAAAGATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTCCTTCAGGTGGTCGAACAGGGTGGGTGGTaGAGGCAGAGGCTTCCCTGT +
Preference number: 2 (lower is better)
Translates to: PSPGSRHGWSHESLLQVVEQGGW*RQRLPC
Trigger: ACAGGGAAGCCTCTGCCTCCACCACCCACCCTGTTC...GACCACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR-3UTR CCA 90 bp CTCAGCGATGATGTATTCCCCTGGGATAGGTGTGCAGGGCACTCCAGCCACCTGCCCAGGTTCACGCCATaGATGGTCACACGAGTCCCT +
Preference number: 2 (lower is better)
Translates to: LSDDVFPWDRCAGHSSHLPRFTP*MVTRVP
Trigger: AGGGACTCGTGTGACCATCCATGGCGTGAACCTGGG...CAGGTGGCTGGAGTGCCCTGCACACCTATCCCAGGGGAATACATCATCGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR-3UTR TCA 90 bp CCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTCCTTCAGGTGGTCCTGATTTTGGGTGTCCTCTGTaGAGCCAGCAGCCTGTCAGT +
Preference number: 2 (lower is better)
Translates to: PRFTPWMVTRVPPSGGPDFGCPL*SQQPVS
Trigger: ACTGACAGGCTGCTGGCTTCACAGAGGACACCCAAA...ATCAGGACCACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR-3UTR GCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTAGGAGGCCTGGTCTGTaGAGTCCCCAGGTGCCTGGC +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILRRPGL*SPQVPG
Trigger: GCCAGGCACCTGGGGACTGCACAGACCAGGCCTCCT...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp CCTGAGGGCTTACCAGTTGAATTTCTTGTCCTGCTACAACAGAGCTaGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGC +
Preference number: 2 (lower is better)
Translates to: PEGLPVEFLVLLQQS*PLGPRMEPWPLLGS
Trigger: GCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTGTAGCAGGACAAGAAATTCAACTGGTAAGCCCTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp TGGCCCATCTCACAGACGATCTGCTCAGCGATGATGTATTCCCCTGGGATAGGTTCAGTCCTCAGTCTGTaGACAGGGTGGGTGGTGGAG +
Preference number: 2 (lower is better)
Translates to: WPISQTICSAMMYSPGIGSVLSL*TGWVVE
Trigger: CTCCACCACCCACCCTGTTCACAGACTGAGGACTGA...ACCTATCCCAGGGGAATACATCATCGCTGAGCAGATCGTCTGTGAGATGGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR-3UTR CCA 90 bp TATAACGGCATGGCCCATCTCACAGACGATCTGCTCAGCGATGATGTATTCCCCTGTGAACAGGGTGGGTaGTGGAGGCAGAGGCTTCCC +
Preference number: 2 (lower is better)
Translates to: YNGMAHLTDDLLSDDVFPCEQGG*WRQRLP
Trigger: GGGAAGCCTCTGCCTCCACCACCCACCCTGTTCACA...GGGGAATACATCATCGCTGAGCAGATCGTCTGTGAGATGGGCCATGCCGTTATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR-3UTR TCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGAAACATGGCTGCCATTaGCAGAGGAGCCTTTCCTTC +
Preference number: 2 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQKHGCH*QRSLSF
Trigger: GAAGGAAAGGCTCCTCTGTCAATGGCAGCCATGTTT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCTTCTGGTTATGAGTaGAGGTTGGCCTCCCCTCTC +
Preference number: 2 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSASGYE*RLASPL
Trigger: GAGAGGGGAGGCCAACCTTCACTCATAACCAGAAGC...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGTGTTCACTGTCCTTCTaGAAGGAACCGGCTGTGATG +
Preference number: 2 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQCSLSF*KEPAVM
Trigger: CATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACA...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGTCCTTAAGGAGGAGGTaGCTGTTCTATGAAAGCCTC +
Preference number: 2 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQSLRRR*LFYESL
Trigger: GAGGCTTTCATAGAACAGCCACCTCCTCCTTAAGGA...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCAACGGGTACCATAAGTaGCTGCTGGGATATACCAGG +
Preference number: 2 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSANGYHK*LLGYTR
Trigger: CCTGGTATATCCCAGCAGCCACTTATGGTACCCGTT...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCCCTAGTGTTTTCTGCTaGGGAGGGTGGGAAAACCAT +
Preference number: 2 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSAPSVFC*GGWENH
Trigger: ATGGTTTTCCCACCCTCCCCAGCAGAAAACACTAGG...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp ACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATGGCTGCCATaGACAGAGGAGCCTTTCCTTCTTCCGTCAGTGAGGTTTCAGAGG +
Preference number: 2 (lower is better)
Translates to: TVLLEGTGCDETWLP*TEEPFLLPSVRFQR
Trigger: CCTCTGAAACCTCACTGACGGAAGAAGGAAAGGCTCCTCTGTCAATGGCAGCCATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATAACAGAGCTTGCCTCTaGGCCCAAGGATGGAGCCTT +
Preference number: 2 (lower is better)
Translates to: PAVSACCIRTASSLLCFYNRACL*AQGWSL
Trigger: AAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTT...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTTGGAAGCCGCCTTCTTaGCTTTTCTTCTTTGCCCTG +
Preference number: 2 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSWKPPS*LFFFAL
Trigger: CAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCA...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCTCCCATCTTTCCTTTTaGGAAGCCAGTGTGATAGCT +
Preference number: 2 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSASHLSF*EASVIA
Trigger: AGCTATCACACTGGCTTCTCAAAAGGAAAGATGGGA...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR GCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATTGTGCAGTCCCCAGGTaGCTGGCTTGTGGGTCTCTT +
Preference number: 2 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYCAVPR*LACGSL
Trigger: AAGAGACCCACAAGCCAGGCACCTGGGGACTGCACA...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGAGAGCATTTCCATACTaGTTCTACTCAGCATCTCTC +
Preference number: 2 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQRAFPY*FYSASL
Trigger: GAGAGATGCTGAGTAGAACCAGTATGGAAATGCTCT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTGCCTTGGCCTCTGCTTaGAAGCTATACTCAGGAAGG +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILALASA*KLYSGR
Trigger: CCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGC...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp GAGAGGCAGCTTGGCTCAAGGCCTTCATGTGCCTGCATAAAGAGCTaGTCCCTTTCTCTCCCATACATTCAGGAACTTTGGTCCTGTTTG +
Preference number: 2 (lower is better)
Translates to: ERQLGSRPSCACIKS*SLSLPYIQELWSCL
Trigger: CAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACAAGCTCTTTATGCAGGCACATGAAGGCCTTGAGCCAAGCTGCCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCCTCCTCTTAGGAGATaGGGATACACAAGGGCACAG +
Preference number: 2 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDPPLRR*GYTRAQ
Trigger: CTGTGCCCTTGTGTATCCTCATCTCCTAAGAGGAGG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCGGATTGTTCTCCAAATaGATGAGTGAAGGACACAGT +
Preference number: 2 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSAGLFSK*MSEGHS
Trigger: ACTGTGTCCTTCACTCATTCATTTGGAGAACAATCC...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR GCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCGAAACAGATGCTAATTaGAAAGCTGTTGGAGTTGGC +
Preference number: 2 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSAETDAN*KAVGVG
Trigger: GCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTC...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR GCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTGGTACCATAAGTGGCTaGTGGGATATACCAGGTAGG +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILGTISG*WDIPGR
Trigger: CCTACCTGGTATATCCCAGCAGCCACTTATGGTACC...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTTCACACTGTGATGGGTaGTGTTCACTGTCCTTCTGG +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILSHCDG*CSLSFW
Trigger: CCAGAAGGACAGTGAACACCACCCATCACAGTGTGA...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTTTATCAGAAGAAAAGTaGCCTTGGCATGGCTGGTTG +
Preference number: 2 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSLSEEK*PWHGWL
Trigger: CAACCAGCCATGCCAAGGCCACTTTTCTTCTGATAA...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGGCTGTGATGAAACATaGCTGCCATTGACAGAGGAG +
Preference number: 2 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDGCDET*LPLTEE
Trigger: CTCCTCTGTCAATGGCAGCCATGTTTCATCACAGCC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGTGACACAATGTGGTTaGAAAGGGTCCTTTTTGAGT +
Preference number: 2 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSVTQCG*KGSFLS
Trigger: ACTCAAAAAGGACCCTTTCCAACCACATTGTGTCAC...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp GGACATATGTTCACCATTCCCTCATGCCCACCCTTTGTCATCCTCTaGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGA +
Preference number: 2 (lower is better)
Translates to: GHMFTIPSCPPFVIL*SSSLETDANCKAVG
Trigger: TCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGTGAACATATGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp CTGCATAAAGAGCTTGTCCCTTTCTCTCCCATACATTCAGGAACTTaGGTCCTGTTTGGTGGGGACCACACTTCTTTATGCGTGGATGTC +
Preference number: 2 (lower is better)
Translates to: LHKELVPFSPIHSGT*VLFGGDHTSLCVDV
Trigger: GACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACAAGCTCTTTATGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATAAGCTTTGGGTGATATaGGGAGCAAACACTTTGGCT +
Preference number: 2 (lower is better)
Translates to: PAVSACCIRTASSLLCFYKLWVI*GANTLA
Trigger: AGCCAAAGTGTTTGCTCCTCATATCACCCAAAGCTT...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTTGTTCTCCAAATGAATaGGTGAAGGACACAGTTCCC +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILCSPNE*VKDTVP
Trigger: GGGAACTGTGTCCTTCACTCATTCATTTGGAGAACA...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR GCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATTTCTTCTTTGCCCTGTaGAGGCAGTCAGATCTGGTG +
Preference number: 2 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYFFFAL*RQSDLV
Trigger: CACCAGATCTGACTGCCTGCACAGGGCAAAGAAGAA...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp AGCTTGTCCCTTTCTCTCCCATACATTCAGGAACTTTGGTCCTGTTaGGTGGGGACCACACTTCTTTATGCGTGGATGTCAAAATGGAGA +
Preference number: 2 (lower is better)
Translates to: SLSLSLPYIQELWSC*VGTTLLYAWMSKWR
Trigger: TCTCCATTTTGACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACATTTCCACAAAGGCCTaGAGTTCTCAGTTGCATCTG +
Preference number: 2 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDISTKA*SSQLHL
Trigger: CAGATGCAACTGAGAACTTCAGGCCTTTGTGGAAAT...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATAAATCAGCTGAGGCCTaGGTTAATTGTGAAGGAAGT +
Preference number: 2 (lower is better)
Translates to: PAVSACCIRTASSLLCFYKSAEA*VNCEGS
Trigger: ACTTCCTTCACAATTAACTCAGGCCTCAGCTGATTT...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATAAAAGTTGGACGGGATaGACAGGGAGGATTTATGTT +
Preference number: 2 (lower is better)
Translates to: PAVSACCIRTASSLLCFYKSWTG*TGRIYV
Trigger: AACATAAATCCTCCCTGTCCATCCCGTCCAACTTTT...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp TGCGTGGATGTCAAAATGGAGACCAAGCGTGTCAAAATGATGACCTaGACTGAGTCTCAAAGAAGCTTCTTACTGCCTTCTCTGTGTTCC +
Preference number: 2 (lower is better)
Translates to: CVDVKMETKRVKMMT*TESQRSFLLPSLCS
Trigger: GGAACACAGAGAAGGCAGTAAGAAGCTTCTTTGAGACTCAGTCAAGGTCATCATTTTGACACGCTTGGTCTCCATTTTGACATCCACGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACACCTGAGCTCACACTGTaGTGGGTGGTGTTCACTGTC +
Preference number: 2 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTPELTL*WVVFTV
Trigger: GACAGTGAACACCACCCATCACAGTGTGAGCTCAGG...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATCATGACAGACAGAGATaGTGGTCATTTCTACTGAGG +
Preference number: 2 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYHDRQR*WSFLLR
Trigger: CCTCAGTAGAAATGACCATCATCTCTGTCTGTCATG...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTAGCTTCAGCTATATGTaGGACAGCTATCTGAAGATA +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILSFSYM*DSYLKI
Trigger: TATCTTCAGATAGCTGTCTCACATATAGCTGAAGCT...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR GCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTTCTTCCTGGCTTATTTaGCAAATGGTTAGTACGAAC +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILSSWLI*QMVSTN
Trigger: GTTCGTACTAACCATTTGGCAAATAAGCCAGGAAGA...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGGATTCAGGTCTTCCTaGCTTATTTGCCAAATGGTT +
Preference number: 2 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDGFRSS*LICQMV
Trigger: AACCATTTGGCAAATAAGCCAGGAAGACCTGAATCC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATGACTATCTTTCAGGTTaGCCCTTCTCCCTTCATCTA +
Preference number: 2 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYDYLSG*PFSLHL
Trigger: TAGATGAAGGGAGAAGGGCCAACCTGAAAGATAGTC...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp TTTCCTGAGTATTTTGCTGAATGCTTTTCTCTCTCCACTTGTCAGTaGCATTCAGGCAAGAAACAAGCTGAACAGCCCAGACAGCTTCAG +
Preference number: 2 (lower is better)
Translates to: FPEYFAECFSLSTCQ*HSGKKQAEQPRQLQ
Trigger: CTGAAGCTGTCTGGGCTGTTCAGCTTGTTTCTTGCCTGAATGCAACTGACAAGTGGAGAGAGAAAAGCATTCAGCAAAATACTCAGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR GCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTCTACATTCTTTGATTTaGTCTCTTCCCATCATTCTC +
Preference number: 2 (lower is better)
Translates to: PEATLHFLTLLALCISILLHSLI*SLPIIL
Trigger: GAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAG...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATACAAAGCTGTTGGAGTTaGCTGCTAGGGGTCATCCCA +
Preference number: 2 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIQSCWS*LLGVIP
Trigger: TGGGATGACCCCTAGCAGCCAACTCCAACAGCTTTG...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp CCAACTCATGGAATCCTTAGCAAAGTGTCTAGACTATCTTTCAGGTaGGCCCTTCTCCCTTCATCTACATTCTTTGATTTGCTCTCTTCC +
Preference number: 2 (lower is better)
Translates to: PTHGILSKVSRLSFR*ALLPSSTFFDLLSS
Trigger: GGAAGAGAGCAAATCAAAGAATGTAGATGAAGGGAGAAGGGCCAACCTGAAAGATAGTCTAGACACTTTGCTAAGGATTCCATGAGTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATAGGCTTGGGATTAAGTaGAACAAAGAAAAGGTGTTC +
Preference number: 2 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYRLGIK*NKEKVF
Trigger: GAACACCTTTTCTTTGTTTCACTTAATCCCAAGCCT...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGAGGAGCAAACACTTTaGCTTGGTGTGAAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: HLHSLICSLPIILSILSKEEQTL*LGVKGQ
Trigger: CTGGCCTTTCACACCAAGCCAAAGTGTTTGCTCCTC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp CTATCTTTCAGGTTGGCCCTTCTCCCTTCATCTACATTCTTTGATTaGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACATCTTCA +
Preference number: 2 (lower is better)
Translates to: LSFRLALLPSSTFFD*LSSHHSLHTLQTSS
Trigger: TGAAGATGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATGAAGGGAGAAGGGCCAACCTGAAAGATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 90 bp CTAGACTATCTTTCAGGTTGGCCCTTCTCCCTTCATCTACATTCTTaGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACAT +
Preference number: 2 (lower is better)
Translates to: LDYLSGWPFSLHLHS*ICSLPIILSILSKH
Trigger: ATGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATGAAGGGAGAAGGGCCAACCTGAAAGATAGTCTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGAGGTGGCTGTTCTATaGAAGCCTCATCTCTTCAGT +
Preference number: 2 (lower is better)
Translates to: HLHSLICSLPIILSILSKEVAVL*KPHLFS
Trigger: ACTGAAGAGATGAGGCTTTCATAGAACAGCCACCTC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATCAGAATCTCAGATACTaGAATCAACTGGAAAAATCA +
Preference number: 2 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYQNLRY*NQLEKS
Trigger: TGATTTTTCCAGTTGATTCCAGTATCTGAGATTCTG...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACAAAAGTGGCCTTGGCATaGCTGGTTGTGAATCATCAT +
Preference number: 2 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTKVALA*LVVNHH
Trigger: ATGATGATTCACAACCAGCCATGCCAAGGCCACTTT...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR TCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATATGGCATGGCTGGTTGTaGATCATCATAAAATCAGCA +
Preference number: 2 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIWHGWL*IIIKSA
Trigger: TGCTGATTTTATGATGATTCACAACCAGCCATGCCA...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACAACACTTTCACATCCATaGTTTCATGACAGACAGAGA +
Preference number: 2 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTTLSHP*FHDRQR
Trigger: TCTCTGTCTGTCATGAAACCATGGATGTGAAAGTGT...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp GCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTaGAAGCTATACTCAGGAAGGCTGGCCATCTATGGC +
Preference number: 3 (lower is better)
Translates to: ASGPKDGALASA*KLYSGRLAIYG
Trigger: GCCATAGATGGCCAGCCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp GCCTGTCAGTCCTCAGTCTGTGAACAGGGTGGGTGGTaGAGGCAGAGGCTTCCCTGTGAGCATCTTGCCTTG +
Preference number: 3 (lower is better)
Translates to: ACQSSVCEQGGW*RQRLPCEHLAL
Trigger: CAAGGCAAGATGCTCACAGGGAAGCCTCTGCCTCCACCACCCACCCTGTTCACAGACTGAGGACTGACAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR GCA 72 bp GCTTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTaGTTGGAAGCTATACTCAGGAAGGCTGGCCATCTA +
Preference number: 3 (lower is better)
Translates to: ACLWAQGWSLGL*LEAILRKAGHL
Trigger: TAGATGGCCAGCCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp CAACAGAGCTTGCCTCTGGGCCCAAGGATGGAGCCTTaGCCTCTGCTTGGAAGCTATACTCAGGAAGGCTGG +
Preference number: 3 (lower is better)
Translates to: QQSLPLGPRMEP*PLLGSYTQEGW
Trigger: CCAGCCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp TCAGACCTAGGAGGCCTGGTCTGTGCAGTCCCCAGGTaGCTGGCTTGTGGGTCTCTTTTCAGAGTCCTTAAG +
Preference number: 3 (lower is better)
Translates to: SDLGGLVCAVPR*LACGSLFRVLK
Trigger: CTTAAGGACTCTGAAAAGAGACCCACAAGCCAGGCACCTGGGGACTGCACAGACCAGGCCTCCTAGGTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TCCTGCTACAACAGAGCTTGCCTCTGGGCCCAAGGATaGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGG +
Preference number: 3 (lower is better)
Translates to: SCYNRACLWAQG*SLGLCLEAILR
Trigger: CCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTGTAGCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp GCAATCTCAGAGAAGTCCAAGCCCAGGTTCACGCCATaGATGGTCACACGAGTCCCTCCTTCAGGTGGTCCT +
Preference number: 3 (lower is better)
Translates to: AISEKSKPRFTP*MVTRVPPSGGP
Trigger: AGGACCACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGAGATTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR CCA 72 bp AGGCGCACAGGCCCAGATGTGGTACCTATAACGGCATaGCCCATCTCACAGACGATCTGCTCAGCGATGATG +
Preference number: 3 (lower is better)
Translates to: RRTGPDVVPITA*PISQTICSAMM
Trigger: CATCATCGCTGAGCAGATCGTCTGTGAGATGGGCCATGCCGTTATAGGTACCACATCTGGGCCTGTGCGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR TCA 72 bp CAGTGTGTCATGGGGAAAGGTCTGAGTAGGAGAGGATaGGGAGAGGCAGCTTGGCTCAAGGCCTTCATGTGC +
Preference number: 3 (lower is better)
Translates to: QCVMGKGLSRRG*GEAAWLKAFMC
Trigger: GCACATGAAGGCCTTGAGCCAAGCTGCCTCTCCTCATCCTCTCCTACTCAGACCTTTCCCCATGACACACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TCTCAGAGAAGTCCAAGCCCAGGTTCACGCCATGGATaGTCACACGAGTCCCTCCTTCAGGTGGTCCTGATA +
Preference number: 3 (lower is better)
Translates to: SQRSPSPGSRHG*SHESLLQVVLI
Trigger: TATCAGGACCACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR-3UTR CAA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGTCCCTGAAGCCACTTaGCATTTCCTCACCCTCCTG +
Preference number: 3 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSVPEAT*HFLTLL
Trigger: CAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGGGAC...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp TACCAGTTGAATTTCTTGTCCTGCTACAACAGAGCTTaGCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGC +
Preference number: 3 (lower is better)
Translates to: YQLNFLSCYNRA*LWAQGWSLGLC
Trigger: GCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTGTAGCAGGACAAGAAATTCAACTGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp TCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTaGTTTTATCTCATGTGCAGCAGGCCCAGGGGCCTT +
Preference number: 3 (lower is better)
Translates to: SACCIRTASSLL*FYLMCSRPRGL
Trigger: AAGGCCCCTGGGCCTGCTGCACATGAGATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp TCTTCCAGCCTTCTTCCCACCATAAGATCTGCCCCATaGCCTAGGTCCCTGAAGCCACTTTGCATTTCCTCA +
Preference number: 3 (lower is better)
Translates to: SSSLLPTIRSAP*PRSLKPLCISS
Trigger: TGAGGAAATGCAAAGTGGCTTCAGGGACCTAGGGCATGGGGCAGATCTTATGGTGGGAAGAAGGCTGGAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp GTACCTATAACGGCATGGCCCATCTCACAGACGATCTaGTCAGCGATGATGTATTCCCCTGGGATAGGTGTG +
Preference number: 3 (lower is better)
Translates to: VPITAWPISQTI*SAMMYSPGIGV
Trigger: CACACCTATCCCAGGGGAATACATCATCGCTGAGCAGATCGTCTGTGAGATGGGCCATGCCGTTATAGGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR CCA 72 bp ACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATaGCTGCCATTGACAGAGGAGCCTTTCCTTCTTCCG +
Preference number: 3 (lower is better)
Translates to: TVLLEGTGCDET*LPLTEEPFLLP
Trigger: CGGAAGAAGGAAAGGCTCCTCTGTCAATGGCAGCCATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TTGAATTTCTTGTCCTGCTACAACAGAGCTTGCCTCTaGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAA +
Preference number: 3 (lower is better)
Translates to: LNFLSCYNRACL*AQGWSLGLCLE
Trigger: TTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTGTAGCAGGACAAGAAATTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGCAAATTAAACAAAAGTaGGACGGGATGGACAGGGAG +
Preference number: 3 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQQIKQK*DGMDRE
Trigger: CTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTG...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCTGCTACAACAGAGCTaGCCTCTGGGCCCAAGGATG +
Preference number: 3 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDLLQQS*PLGPRM
Trigger: CATCCTTGGGCCCAGAGGCAAGCTCTGTTGTAGCAG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACAGAAACATGGCTGCCATaGACAGAGGAGCCTTTCCTT +
Preference number: 3 (lower is better)
Translates to: TIPSCPPFVILLSSSLETETWLP*TEEPFL
Trigger: AAGGAAAGGCTCCTCTGTCAATGGCAGCCATGTTTC...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp TGCCTTCTTAGGGGACATATGTTCACCATTCCCTCATaGCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTA +
Preference number: 3 (lower is better)
Translates to: CLLRGHMFTIPS*PPFVILLSSSL
Trigger: TAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGTGAACATATGTCCCCTAAGAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp CATTCCATGGAAGCCGCCTTCTTGGCTTTTCTTCTTTaGCCTGTGCAGGCAGTCAGATCTGGTGAGCAGAAT +
Preference number: 3 (lower is better)
Translates to: HSMEAAFLAFLL*PVQAVRSGEQN
Trigger: ATTCTGCTCACCAGATCTGACTGCCTGCACAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCATGGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp GAGGAGAGGCAGCTTGGCTCAAGGCCTTCATGTGCCTaGATAAAGAGCTTGTCCCTTTCTCTCCCATACATT +
Preference number: 3 (lower is better)
Translates to: EERQLGSRPSCA*IKSLSLSLPYI
Trigger: AATGTATGGGAGAGAAAGGGACAAGCTCTTTATGCAGGCACATGAAGGCCTTGAGCCAAGCTGCCTCTCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TCTTCCGTCAGTGAGGTTTCAGAGGATAGCCAGCTCTaGGGTCTGATACCCTTCACTCATCCCATCTTTCCT +
Preference number: 3 (lower is better)
Translates to: SSVSEVSEDSQL*GLIPFTHPIFP
Trigger: AGGAAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAACCTCACTGACGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp ACAGGTCCTTGTTGGGTACTTCCTCCTCTTAGGAGATaGGGATACACAAGGGCACAGCACAGAAGGCAGTTT +
Preference number: 3 (lower is better)
Translates to: TGPCWVLPPLRR*GYTRAQHRRQF
Trigger: AAACTGCCTTCTGTGCTGTGCCCTTGTGTATCCTCATCTCCTAAGAGGAGGAAGTACCCAACAAGGACCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp GGTTTCATGACAGACAGAGATGATGGTCATTTCTACTaGGGCAAACGCAGATGCCCAGTTGGTCAGGGGCTT +
Preference number: 3 (lower is better)
Translates to: GFMTDRDDGHFY*GKRRCPVGQGL
Trigger: AAGCCCCTGACCAACTGGGCATCTGCGTTTGCCTCAGTAGAAATGACCATCATCTCTGTCTGTCATGAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp TCTCCAAACATCTTCAGTGAAGCATGCCAGAGGCAGTaGACGGGTACCATAAGTGGCTGCTGGGATATACCA +
Preference number: 3 (lower is better)
Translates to: SPNIFSEACQRQ*TGTISGCWDIP
Trigger: TGGTATATCCCAGCAGCCACTTATGGTACCCGTTCACTGCCTCTGGCATGCTTCACTGAAGATGTTTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp CTGGCTGTGGTGGGATTCAGGTCTTCCTGGCTTATTTaGCAAATGGTTAGTACGAACTTCTGCTCCTTCCTG +
Preference number: 3 (lower is better)
Translates to: LAVVGFRSSWLI*QMVSTNFCSFL
Trigger: CAGGAAGGAGCAGAAGTTCGTACTAACCATTTGGCAAATAAGCCAGGAAGACCTGAATCCCACCACAGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TGGTGGGATTCAGGTCTTCCTGGCTTATTTGCCAAATaGTTAGTACGAACTTCTGCTCCTTCCTGCCTCTCC +
Preference number: 3 (lower is better)
Translates to: WWDSGLPGLFAK*LVRTSAPSCLS
Trigger: GGAGAGGCAGGAAGGAGCAGAAGTTCGTACTAACCATTTGGCAAATAAGCCAGGAAGACCTGAATCCCACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp CAAAGGCCTGAAGTTCTCAGTTGCATCTGGCTGTGGTaGGATTCAGGTCTTCCTGGCTTATTTGCCAAATGG +
Preference number: 3 (lower is better)
Translates to: QRPEVLSCIWLW*DSGLPGLFAKW
Trigger: CCATTTGGCAAATAAGCCAGGAAGACCTGAATCCCACCACAGCCAGATGCAACTGAGAACTTCAGGCCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCCCTTTGTCATCCTCTaGTCCTCCTCCCTAGAAACA +
Preference number: 3 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDPFVIL*SSSLET
Trigger: TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp CCCATCATTCTCTCCATACTCTCCAAACATCTTCAGTaGAGCATGCCAGAGGCAGTGAACGGGTACCATAAG +
Preference number: 3 (lower is better)
Translates to: PIILSILSKHLQ*SMPEAVNGYHK
Trigger: CTTATGGTACCCGTTCACTGCCTCTGGCATGCTTCACTGAAGATGTTTGGAGAGTATGGAGAGAATGATGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp CAGTTGCATCTGGCTGTGGTGGGATTCAGGTCTTCCTaGCTTATTTGCCAAATGGTTAGTACGAACTTCTGC +
Preference number: 3 (lower is better)
Translates to: QLHLAVVGFRSS*LICQMVSTNFC
Trigger: GCAGAAGTTCGTACTAACCATTTGGCAAATAAGCCAGGAAGACCTGAATCCCACCACAGCCAGATGCAACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTATCCCATCTTTCCTTTaGAGAAGCCAGTGTGATAGC +
Preference number: 3 (lower is better)
Translates to: PEATLHFLTLLALCISILIPSFL*RSQCDS
Trigger: GCTATCACACTGGCTTCTCAAAAGGAAAGATGGGAT...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACCTTCTCCTTGCCCGTaGTGTCCTGAGCTCACACTG +
Preference number: 3 (lower is better)
Translates to: HLHSLICSLPIILSILSKPSPCP*CPELTL
Trigger: CAGTGTGAGCTCAGGACACAACGGGCAAGGAGAAGG...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCGGACCAACTTCTCATTaGTTGAGGCTTGGGATTAAG +
Preference number: 3 (lower is better)
Translates to: LSSSLETDANCKAVGVGCGPTSH*LRLGIK
Trigger: CTTAATCCCAAGCCTCAACAAATGAGAAGTTGGTCC...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATCTGAGGGCTTACCAGTaGAATTTCTTGTCCTGCTAC +
Preference number: 3 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYLRAYQ*NFLSCY
Trigger: GTAGCAGGACAAGAAATTCAACTGGTAAGCCCTCAG...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACAGCAAAGCTGTTGGAGTaGGCTGCTAGGGGTCATCCC +
Preference number: 3 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTAKLLE*AARGHP
Trigger: GGGATGACCCCTAGCAGCCAACTCCAACAGCTTTGC...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp ACTCACCCTCCTGGCATGGCATGGCCTCTCTCTAGCTaGATTTTCCTCCTTAGTTTTTCTATAATTGTGCCC +
Preference number: 3 (lower is better)
Translates to: THPPGMAWPLSS*IFLLSFSIIVP
Trigger: GGGCACAATTATAGAAAAACTAAGGAGGAAAATTCAGCTAGAGAGAGGCCATGCCATGCCAGGAGGGTGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp TGCAAGGCAGGAGACTCTCTATTTTGTTTATTGTGTTaGGGCCTGTCTGACAGGCATTGGCCTTGCTTGTCT +
Preference number: 3 (lower is better)
Translates to: CKAGDSLFCLLC*GLSDRHWPCLS
Trigger: AGACAAGCAAGGCCAATGCCTGTCAGACAGGCCTCAACACAATAAACAAAATAGAGAGTCTCCTGCCTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp GAGGATTCAGGGCTCTTAGCTGTGACACAATGTGGTTaGAAAGGGTCCTTTTTGAGTAACTGCCAGCTTAGT +
Preference number: 3 (lower is better)
Translates to: EDSGLLAVTQCG*KGSFLSNCQLS
Trigger: ACTAAGCTGGCAGTTACTCAAAAAGGACCCTTTCCAACCACATTGTGTCACAGCTAAGAGCCCTGAATCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAAACGCAGATGCCCAGTaGGTCAGGGGCTTCTGGTTA +
Preference number: 3 (lower is better)
Translates to: HLHSLICSLPIILSILSKNADAQ*VRGFWL
Trigger: TAACCAGAAGCCCCTGACCAACTGGGCATCTGCGTT...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATCTCTCCACTTGTCAGTaGCATTCAGGCAAGAAACAA +
Preference number: 3 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYLSTCQ*HSGKKQ
Trigger: TTGTTTCTTGCCTGAATGCAACTGACAAGTGGAGAG...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp ACACTTTCACATCCATGGTTTCATGACAGACAGAGATaGTGGTCATTTCTACTGAGGCAAACGCAGATGCCC +
Preference number: 3 (lower is better)
Translates to: TLSHPWFHDRQR*WSFLLRQTQMP
Trigger: GGGCATCTGCGTTTGCCTCAGTAGAAATGACCATCATCTCTGTCTGTCATGAAACCATGGATGTGAAAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp AGATACTGGAATCAACTGGAAAAATCAGCTGAGGCCTaGGTTAATTGTGAAGGAAGTAACCCAGGGCCAGTC +
Preference number: 3 (lower is better)
Translates to: RYWNQLEKSAEA*VNCEGSNPGPV
Trigger: GACTGGCCCTGGGTTACTTCCTTCACAATTAACTCAGGCCTCAGCTGATTTTTCCAGTTGATTCCAGTATCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp GCCCAGACAGCTTCAGCTATATGTGAGACAGCTATCTaGAGATATATACATTCCATGGAAGCCGCCTTCTTG +
Preference number: 3 (lower is better)
Translates to: AQTASAICETAI*RYIHSMEAAFL
Trigger: CAAGAAGGCGGCTTCCATGGAATGTATATATCTTCAGATAGCTGTCTCACATATAGCTGAAGCTGTCTGGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp AAACCACAGAAAGAGGTAGAACATCAGACACAGAAGTaGCTGATCCACACAGAAGGCAAGAGGTGTTGTTCA +
Preference number: 3 (lower is better)
Translates to: KPQKEVEHQTQK*LIHTEGKRCCS
Trigger: TGAACAACACCTCTTGCCTTCTGTGTGGATCAGGCACTTCTGTGTCTGATGTTCTACCTCTTTCTGTGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp CTTGTGGGTCTCTTTTCAGAGTCCTTAAGGAGGAGGTaGCTGTTCTATGAAAGCCTCATCTCTTCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: LVGLFSESLRRR*LFYESLISSVS
Trigger: AGAAACTGAAGAGATGAGGCTTTCATAGAACAGCCACCTCCTCCTTAAGGACTCTGAAAAGAGACCCACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp CTCTCCCATACATTCAGGAACTTTGGTCCTGTTTGGTaGGGACCACACTTCTTTATGCGTGGATGTCAAAAT +
Preference number: 3 (lower is better)
Translates to: LSHTFRNFGPVW*GPHFFMRGCQN
Trigger: ATTTTGACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TTTCTCTCCCATACATTCAGGAACTTTGGTCCTGTTTaGTGGGGACCACACTTCTTTATGCGTGGATGTCAA +
Preference number: 3 (lower is better)
Translates to: FLSHTFRNFGPV*WGPHFFMRGCQ
Trigger: TTGACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp GGGTCTGATACCCTTCACTCATCCCATCTTTCCTTTTaGGAAGCCAGTGTGATAGCTTATATGAGTCTCTCT +
Preference number: 3 (lower is better)
Translates to: GSDTLHSSHLSF*EASVIAYMSLS
Trigger: AGAGAGACTCATATAAGCTATCACACTGGCTTCTCAAAAGGAAAGATGGGATGAGTGAAGGGTATCAGACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp TTTTCTTCTTTGCCCTGTGCAGGCAGTCAGATCTGGTaGGCAGAATCTCAGATACTGGAATCAACTGGAAAA +
Preference number: 3 (lower is better)
Translates to: FSSLPCAGSQIW*AESQILESTGK
Trigger: TTTTCCAGTTGATTCCAGTATCTGAGATTCTGCTCACCAGATCTGACTGCCTGCACAGGGCAAAGAAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp GGTTGGCCCTTCTCCCTTCATCTACATTCTTTGATTTaGTCTCTTCCCATCATTCTCTCCATACTCTCCAAA +
Preference number: 3 (lower is better)
Translates to: GWPFSLHLHSLI*SLPIILSILSK
Trigger: TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATGAAGGGAGAAGGGCCAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR GCA 72 bp ATACAGTCCTCTAGAACTCTGTCTTGCCAAACCCTCTaGAGTCCTATTCCTTTCCTAGAGAATTGCCTTTTG +
Preference number: 3 (lower is better)
Translates to: IQSSRTLSCQTL*SPIPFLENCLL
Trigger: CAAAAGGCAATTCTCTAGGAAAGGAATAGGACTGCAGAGGGTTTGGCAAGACAGAGTTCTAGAGGACTGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp CAAAGAACTGGTGGAATGATAGGTAGAAAGCTAAAATaGGAGCAAGACTCTACAATAACTCACCCTCCTGGC +
Preference number: 3 (lower is better)
Translates to: QRTGGMIGRKLK*EQDSTITHPPG
Trigger: GCCAGGAGGGTGAGTTATTGTAGAGTCTTGCTCTCATTTTAGCTTTCTACCTATCATTCCACCAGTTCTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp GATCTGGTGAGCAGAATCTCAGATACTGGAATCAACTaGAAAAATCAGCTGAGGCCTGAGTTAATTGTGAAG +
Preference number: 3 (lower is better)
Translates to: DLVSRISDTGIN*KNQLRPELIVK
Trigger: CTTCACAATTAACTCAGGCCTCAGCTGATTTTTCCAGTTGATTCCAGTATCTGAGATTCTGCTCACCAGATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CCA 72 bp TATGTGAGACAGCTATCTGAAGATATATACATTCCATaGAAGCCGCCTTCTTGGCTTTTCTTCTTTGCCCTG +
Preference number: 3 (lower is better)
Translates to: YVRQLSEDIYIP*KPPSWLFFFAL
Trigger: CAGGGCAAAGAAGAAAAGCCAAGAAGGCGGCTTCCATGGAATGTATATATCTTCAGATAGCTGTCTCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATTCTACATTCTTTGATTaGCTCTCTTCCCATCATTCT +
Preference number: 3 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYSTFFD*LSSHHS
Trigger: AGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp AACAAGCTGAACAGCCCAGACAGCTTCAGCTATATGTaGGACAGCTATCTGAAGATATATACATTCCATGGA +
Preference number: 3 (lower is better)
Translates to: NKLNSPDSFSYM*DSYLKIYTFHG
Trigger: TCCATGGAATGTATATATCTTCAGATAGCTGTCTCACATATAGCTGAAGCTGTCTGGGCTGTTCAGCTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp AGACTCTCTATTTTGTTTATTGTGTTGAGGCCTGTCTaGCAGGCATTGGCCTTGCTTGTCTCTTGTAACATT +
Preference number: 3 (lower is better)
Translates to: RLSILFIVLRPV*QALALLVSCNI
Trigger: AATGTTACAAGAGACAAGCAAGGCCAATGCCTGTCAGACAGGCCTCAACACAATAAACAAAATAGAGAGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR-3UTR CAA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATAAGTTTCCTGAGTATTTaGCTGAATGCTTTTCTCTCT +
Preference number: 3 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMISFLSI*LNAFLS
Trigger: AGAGAGAAAAGCATTCAGCAAAATACTCAGGAAACT...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR TCA 72 bp TTCAAAATTCTAAGTTCTAAGATGATAAGCTTTGGGTaGTATGAGGAGCAAACACTTTGGCTTGGTGTGAAA +
Preference number: 3 (lower is better)
Translates to: FKILSSKMISFG*YEEQTLWLGVK
Trigger: TTTCACACCAAGCCAAAGTGTTTGCTCCTCATATCACCCAAAGCTTATCATCTTAGAACTTAGAATTTTGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTCCTCGCTGGCCAGACTaGGGCTGGGGCAGGTTTCGG +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSPRWPD*GWGRFR
Trigger: CCGAAACCTGCCCCAGCCCCAGTCTGGCCAGCGAGG...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GAGCAATCTCAGAGAAGTCCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGGTGCTGGGGCAGTGCTaGTGGAGGGTACATCTGCGC +
Preference number: 4 (lower is better)
Translates to: EQSQRSPSPGSRHGWSHEVLGQC*WRVHLR
Trigger: GCGCAGATGTACCCTCCACCAGCACTGCCCCAGCAC...CTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGAGATTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR TCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGCAGCCGGCTGTGATCTaGCACAGAGATGCTGTTGGG +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQQPAVI*HRDAVG
Trigger: CCCAACAGCATCTCTGTGTCAGATCACAGCCGGCTG...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGCTGAGCAGCCGGCTGTaGTCTGACACAGAGATGCTG +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQLSSRL*SDTEML
Trigger: CAGCATCTCTGTGTCAGATCACAGCCGGCTGCTCAG...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GAAGTCCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTCCTTCAGGGGGGGTTGGAACACTTaGCATTGTGGCTGGACCAGT +
Preference number: 4 (lower is better)
Translates to: EVQAQVHAMDGHTSPSFRGGWNT*HCGWTS
Trigger: ACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCC...CCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTC
58% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR TCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTTCTCCAAGTCTGGGGTaGTCATGGGGACCCGGGACC +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSSPSLG*SWGPGT
Trigger: GGTCCCGGGTCCCCATGATCACCCCAGACTTGGAGA...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TCTGTGAAGCCAGCAGCCTGTCAGTCCTCAGTCTGTGAACAGGGTGGGTGGTGGATCTGCGCTCACCACTaGACCAGCCACACTCGAACT +
Preference number: 4 (lower is better)
Translates to: SVKPAACQSSVCEQGGWWICAHH*TSHTRT
Trigger: AGTTCGAGTGTGGCTGGTGCAGTGGTGAGCGCAGAT...CCACCACCCACCCTGTTCACAGACTGAGGACTGACAGGCTGCTGGCTTCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR GCA 90 bp AAGTCCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTCCTTCAGGTGAAGTGCTGGGGCAGTaGTGGTGGAGGGTACATCTG +
Preference number: 4 (lower is better)
Translates to: KSKPRFTPWMVTRVPPSGEVLGQ*WWRVHL
Trigger: CAGATGTACCCTCCACCAGCACTGCCCCAGCACTTC...ACCTGAAGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR GCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGATTGCCCAGGTACACTaGCACACTGCTCCCAGCACC +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQIAQVH*HTAPST
Trigger: GGTGCTGGGAGCAGTGTGGCAGTGTACCTGGGCAAT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGCCGCAAAAGCTTCCTTaGACTCCAGTGCCACCCTGG +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQPQKLP*TPVPPW
Trigger: CCAGGGTGGCACTGGAGTGCAAGGAAGCTTTTGCGG...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CTCACAGACGATCTGCTCAGCGATGATGTATTCCCCTGGGATAGGTGTGCAGGGCTGGGGCAGTGCTGGTaGAGGGTACATCTGCGCTCA +
Preference number: 4 (lower is better)
Translates to: LTDDLLSDDVFPWDRCAGLGQCW*RVHLRS
Trigger: TGAGCGCAGATGTACCCTCCACCAGCACTGCCCCAG...CCCTGCACACCTATCCCAGGGGAATACATCATCGCTGAGCAGATCGTCTGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTCCTGCAACACCACTCTaGCAATCCGGCCTTGGCGCC +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSPATPL*QSGLGA
Trigger: GGCGCCAAGGCCGGATTGCCAGAGTGGTGTTGCAGG...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp TGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTaGGAAGCTATACTCAGGAAGGCTGGCCATCTATGG +
Preference number: 4 (lower is better)
Translates to: CLWAQGWSLGLC*EAILRKAGHLW
Trigger: CCATAGATGGCCAGCCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGGGGGGTTGGAACACTTaGCATTGTGGCTGGACCAGT +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQGGWNT*HCGWTS
Trigger: ACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCC...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TCTGTGAAGCCAGCAGCCTGTCAGTCCTCAGTCTGTGAACAGGGTGGGTGGTGGGCTTTCCCGCTGGGCTaGACACTTGTAGAGATGTAC +
Preference number: 4 (lower is better)
Translates to: SVKPAACQSSVCEQGGWWAFPLG*TLVEMY
Trigger: GTACATCTCTACAAGTGTGCAGCCCAGCGGGAAAGC...CCACCACCCACCCTGTTCACAGACTGAGGACTGACAGGCTGCTGGCTTCACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR GCA 90 bp GCGCACAGGCCCAGATGTGGTACCTATAACGGCATGGCCCATCTCACAGACGATACAGACACCAGGCTTTaGAGTCCCAGAGCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: AHRPRCGTYNGMAHLTDDTDTRL*SPRASV
Trigger: CACAGAGGCTCTGGGACTGCAAAGCCTGGTGTCTGT...ATCGTCTGTGAGATGGGCCATGCCGTTATAGGTACCACATCTGGGCCTGTGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
3UTR CAA 72 bp ACAACAGAGCTTGCCTCTGGGCCCAAGGATGGAGCCTaGGCCTCTGCTTGGAAGCTATACTCAGGAAGGCTG +
Preference number: 4 (lower is better)
Translates to: TTELASGPKDGA*ASAWKLYSGRL
Trigger: CAGCCTTCCTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAAGCTCTGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTTTCCCAGCAGCCAGTTaGGCTCCAAGTTGCCCTCTC +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSFPAAS*APSCPL
Trigger: GAGAGGGCAACTTGGAGCTCAACTGGCTGCTGGGAA...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGACTTGTGGTCAGCCTTaGGGCAGAGACCACAGCTTT +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQTCGQP*GRDHSF
Trigger: AAAGCTGTGGTCTCTGCCTCAAGGCTGACCACAAGT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTCACCATGGTACCTCCTaGCTCTGGTCCCCGGATCGG +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFHHGTS*LWSPDR
Trigger: CCGATCCGGGGACCAGAGTCAGGAGGTACCATGGTG...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGCTCACGGAGCCAGGTaGGAACACCATCCCGCCCAC +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDAHGAR*EHHPAH
Trigger: GTGGGCGGGATGGTGTTCTCACCTGGCTCCGTGAGC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGAGAGGTTACGGTACTTaGACCAATGGCAGCGGAAGG +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQRGYGT*TNGSGR
Trigger: CCTTCCGCTGCCATTGGTGCAAGTACCGTAACCTCT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTACTGGTCAGAGAGGGTaGCAGACAGGTGAGGGTGGT +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSTGQRG*QTGEGG
Trigger: ACCACCCTCACCTGTCTGGCACCCTCTCTGACCAGT...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGCTCGCATGGAGAAGCTaGGCTGTAGTTCCAGTGTAC +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQLAWRS*AVVPVY
Trigger: GTACACTGGAACTACAGCGCAGCTTCTCCATGCGAG...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACACGGGCCTGTTCATCCTaGTCTAGTGCCCCGATGAGC +
Preference number: 4 (lower is better)
Translates to: TIPSCPPFVILLSSSLETRACSS*SSAPMS
Trigger: GCTCATCGGGGCACTAGAGCAGGATGAACAGGCCCG...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTTGGCCAGACTGGGGCTaGGGCAGGTTTCGGGCCTTA +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFWPDWG*GRFRAL
Trigger: TAAGGCCCGAAACCTGCCCCAGCCCCAGTCTGGCCA...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TCAGAGAAGTCCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTCCTCCACACTCGAACTTGTaGTCAGCCTTGAGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: SEKSKPRFTPWMVTRVPPPHSNL*SALRQR
Trigger: TCTCTGCCTCAAGGCTGACCACAAGTTCGAGTGTGG...AGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR CCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTGTGCTGGGGCAGTGCTaGTGGAGGGTACATCTGCGC +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFVLGQC*WRVHLR
Trigger: GCGCAGATGTACCCTCCACCAGCACTGCCCCAGCAC...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTCAGGAGCCAGGCCACTaGGAGCAGAACCACAGACAG +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFQEPGH*EQNHRQ
Trigger: CTGTCTGTGGTTCTGCTCTCAGTGGCCTGGCTCCTG...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATTCTGGCCCTGTCTTGTaGGCCACCTGGATGGTGAGG +
Preference number: 4 (lower is better)
Translates to: PAVSACCIRTASSLLCFYSGPVL*ATWMVR
Trigger: CCTCACCATCCAGGTGGCTCACAAGACAGGGCCAGA...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp ATCTCAGAGAAGTCCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTACTTGTGGTCAGCCTTaGGGCAGAGACCACAGCTTT +
Preference number: 4 (lower is better)
Translates to: ISEKSKPRFTPWMVTRVPTCGQP*GRDHSF
Trigger: AAAGCTGTGGTCTCTGCCTCAAGGCTGACCACAAGT...AGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR TCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGTCATTACTGTGTAGTTaGGTTTGGCCCCTCCAGAGG +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQSLLCS*VWPLQR
Trigger: CCTCTGGAGGGGCCAAACTCAACTACACAGTAATGA...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCGAGCCTCCCAGAGGCTaGTTGATGTCCAGGCCGCAG +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCEPPRG*LMSRPQ
Trigger: CTGCGGCCTGGACATCAACCAGCCTCTGGGAGGCTC...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGTGGTACGAGCTGTTTTaGCACTGCACACTGGAACTG +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQWYELF*HCTLEL
Trigger: CAGTTCCAGTGTGCAGTGCCAAAACAGCTCGTACCA...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TCAGAGAAGTCCAAGCCCAGGTTCACGCCATGGATGGTCACACGAGTCCCTCCTGAACACTTGACATTGTaGCTGGACCAGTCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: SEKSKPRFTPWMVTRVPPEHLTL*LDQSSQ
Trigger: CTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTC...AGGAGGGACTCGTGTGACCATCCATGGCGTGAACCTGGGCTTGGACTTCTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR CCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCGATGATGTATTCCCCTaGGATAGGTGTGCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSADDVFP*DRCAGH
Trigger: GTGCCCTGCACACCTATCCCAGGGGAATACATCATC...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGCTGGTCCTAGTCCATTaGATGATGGGGGTGAAACAC +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQLVLVH*MMGVKH
Trigger: GTGTTTCACCCCCATCATCCAATGGACTAGGACCAG...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGGGAACAGGACTCTCATaGCATAGGTACGGTAGTCCA +
Preference number: 4 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQGTGLS*HRYGSP
Trigger: TGGACTACCGTACCTATGCCATGAGAGTCCTGTTCC...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATACCGCTCTCCAAGTCTaGGGTGATCATGGGGACCCG +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHTALQV*GDHGDP
Trigger: CGGGTCCCCATGATCACCCCAGACTTGGAGAGCGGT...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp CTGGAAGGAACCGGCTGTGATGAAACATGGCTGCCATaGACAGAGGAGCCTTTCCTTCTTCCGTCAGTGAGG +
Preference number: 4 (lower is better)
Translates to: LEGTGCDETWLP*TEEPFLLPSVR
Trigger: CCTCACTGACGGAAGAAGGAAAGGCTCCTCTGTCAATGGCAGCCATGTTTCATCACAGCCGGTTCCTTCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTATGGCTCCACCAGGATaGAGAGGTCATCTAGTCGCA +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSMAPPG*RGHLVA
Trigger: TGCGACTAGATGACCTCTTCATCCTGGTGGAGCCAT...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACAATAGTCCAGCATTGCTaGAGACTCAGGGTCACGGGG +
Preference number: 4 (lower is better)
Translates to: TIPSCPPFVILLSSSLETIVQHC*RLRVTG
Trigger: CCCCGTGACCCTGAGTCTTCAGCAATGCTGGACTAT...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTCATGTCCCGGAGGATTaGGCTCCCATCTTTGAACAC +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSHVPED*APIFEH
Trigger: GTGTTCAAAGATGGGAGCCCAATCCTCCGGGACATG...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATCACAGTGTCCAGACCTaGGCGGTAGTCACTGGTCAG +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHHSVQT*AVVTGQ
Trigger: CTGACCAGTGACTACCGCCCAGGTCTGGACACTGTG...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTCAGGTGAGATGCAGATaGCTTGACTCCCAGATACCT +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSQVRCR*LDSQIP
Trigger: AGGTATCTGGGAGTCAAGTCATCTGCATCTCACCTG...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCAGCCCCTTGAATGCTaGGCACACACTCGTAGCCTC +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDQPLEC*AHTRSL
Trigger: GAGGCTACGAGTGTGTGCTCAGCATTCAAGGGGCTG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTGCCACCTGCACATGGTaGGCAATCTCAGAGAAGTCC +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFATCTW*AISEKS
Trigger: GGACTTCTCTGAGATTGCTCACCATGTGCAGGTGGC...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCCCGGATCGGGCTGAGTaGCAGCACAGAAGGATTCAC +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCPDRAE*QHRRIH
Trigger: GTGAATCCTTCTGTGCTGTCACTCAGCCCGATCCGG...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGGTGAGCCTGGCTTCTaGTCCAAGATTCCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDGEPGF*SKIPVG
Trigger: CCCCACTGGAATCTTGGATCAGAAGCCAGGCTCACC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACAGGAAGTAATCCTGCTTaGCATCCACAGCAGTGCCGA +
Preference number: 4 (lower is better)
Translates to: TIPSCPPFVILLSSSLETGSNPA*HPQQCR
Trigger: TCGGCACTGCTGTGGATGGCAAGCAGGATTACTTCC...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCACTTGGGGTCATCCTTaGAGAGACGCACAATTCTTG +
Preference number: 4 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSATWGHP*RDAQFL
Trigger: CAAGAATTGTGCGTCTCTGCAAGGATGACCCCAAGT...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATGGCAGCAAATCGATTTaGTTCCCAGGCCCGTTGGCA +
Preference number: 4 (lower is better)
Translates to: PAVSACCIRTASSLLCFYGSKSI*FPGPLA
Trigger: TGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCC...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATCAGACACCATTTTGCTaGCCCGGTCACCCTCCTTCT +
Preference number: 4 (lower is better)
Translates to: PAVSACCIRTASSLLCFYQTPFC*PGHPPS
Trigger: AGAAGGAGGGTGACCGGGGCAGCAAAATGGTGTCTG...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTAGAGCACTACCCCGGTaGACAGTGCTGAACAAGGTC +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFRALPR*TVLNKV
Trigger: GACCTTGTTCAGCACTGTGCACCGGGGTAGTGCTCT...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTTTCCTTCTTGTGGGATaGCTCCACCAGGATGAAGAG +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSFLLVG*LHQDEE
Trigger: CTCTTCATCCTGGTGGAGCCATCCCACAAGAAGGAA...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTCGGTACTTGCACCAATaGCAGCGGAAGGCGCTGTTA +
Preference number: 4 (lower is better)
Translates to: PEATLHFLTLLALCISILRYLHQ*QRKALL
Trigger: TAACAGCGCCTTCCGCTGCCATTGGTGCAAGTACCG...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCGAAGAGGTCTCCAGCTaGATTGATGGCCATGCCGTC +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCEEVSS*IDGHAV
Trigger: GACGGCATGGCCATCAATTCAGCTGGAGACCTCTTC...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTGGCTCATGCACTGGCTaGTACTGGCAGCAAATCGAT +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFGSCTG*YWQQID
Trigger: ATCGATTTGCTGCCAGTATCAGCCAGTGCATGAGCC...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATGAGATGCAGATGACTTaGCTCCCAGATACCTGTCCC +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHEMQMT*LPDTCP
Trigger: GGGACAGGTATCTGGGAGTCAAGTCATCTGCATCTC...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTCCCGGTGCACAGTGCTaGACAAGGTCTCAAACAAGT +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFPGAQC*TRSQTS
Trigger: ACTTGTTTGAGACCTTGTTCAGCACTGTGCACCGGG...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCATCTGCGCTCACCACTaGACCAGCCACACTCGAACT +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCICAHH*TSHTRT
Trigger: AGTTCGAGTGTGGCTGGTGCAGTGGTGAGCGCAGAT...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCCAGGGTGGTCCTCAATaGCTGGGAACAGGACTCTCA +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCQGGPQ*LGTGLS
Trigger: TGAGAGTCCTGTTCCCAGGCATTGAGGACCACCCTG...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTTCGTCCACAAATTTCTaGAGGGTGCCCTTGGTGGCT +
Preference number: 4 (lower is better)
Translates to: PEATLHFLTLLALCISILSSTNF*RVPLVA
Trigger: AGCCACCAAGGGCACCCTGCAGAAATTTGTGGACGA...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATTCAGGCGGTCCCTGCTaGTGGTATACAGGGTCAGTC +
Preference number: 4 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYSGGPC*WYTGSV
Trigger: GACTGACCCTGTATACCACCAGCAGGGACCGCCTGA...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTTTGATCCTGCCTTCCTaGAAGGAACAGGTAGTGGGG +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFLILPS*KEQVVG
Trigger: CCCCACTACCTGTTCCTTCCAGGAAGGCAGGATCAA...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGGCCTTAAGGGTGATTaGTTTTACTTCCCCAACTGG +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSGLKGD*FYFPNW
Trigger: CCAGTTGGGGAAGTAAAACCAATCACCCTTAAGGCC...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCGGTTCACGCCATGGATaGTCACACGAGTCCCTCCTT +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCGSRHG*SHESLL
Trigger: AAGGAGGGACTCGTGTGACCATCCATGGCGTGAACC...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTTCTGGCTCAATACGTTaGACCCGTGGGTCATCTATA +
Preference number: 4 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSSGSIR*TRGSSI
Trigger: TATAGATGACCCACGGGTCCAACGTATTGAGCCAGA...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATATGTCCGAGAGATGCTaGCAGAGGCAGGGATGTTGT +
Preference number: 4 (lower is better)
Translates to: PAVSACCIRTASSLLCFYMSERC*QRQGCC
Trigger: ACAACATCCCTGCCTCTGCCAGCATCTCTCGGACAT...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp TGCTGGGGAGGGTGGGAAAACCATCCTGCTGCTATATaGGTGGTAGGTCTAGCAGCTTGGAGAATCTGCATT +
Preference number: 4 (lower is better)
Translates to: CWGGWENHPAAI*VVGLAAWRICI
Trigger: AATGCAGATTCTCCAAGCTGCTAGACCTACCACCAATATAGCAGCAGGATGGTTTTCCCACCCTCCCCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCTGGAAAGTGCTGTACTaGGGCATACCTGTGGTCCCA +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCWKVLY*GIPVVP
Trigger: TGGGACCACAGGTATGCCTCAGTACAGCACTTTCCA...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATGAGCCACCTGGATGGTaGGGTTGCCAGTCAACTTGT +
Preference number: 4 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYEPPGW*GCQSTC
Trigger: ACAAGTTGACTGGCAACCTCACCATCCAGGTGGCTC...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTATCCTTGGGTCCAGGTaGGATGCAGATGACTTGACT +
Preference number: 4 (lower is better)
Translates to: PEATLHFLTLLALCISILILGSR*DADDLT
Trigger: AGTCAAGTCATCTGCATCTCACCTGGACCCAAGGAT...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCTGGGGACAGTCCTCTaGAACATTGATCCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDLGTVL*NIDPAF
Trigger: GAAGGCAGGATCAATGTTTCAGAGGACTGTCCCCAG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCCAAGGTAATGGCCTGTaGTGGTCACCATGGTACCTC +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCQGNGL*WSPWYL
Trigger: GAGGTACCATGGTGACCATCACAGGCCATTACCTTG...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCAGGGCTTTCTCCACGTaGTGCTGTCCATTTCCCTGT +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCRAFST*CCPFPC
Trigger: ACAGGGAAATGGACAGCAGCACGTGGAGAAAGCCCT...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCGAAGTGGAAGGCAGTTaGTTTTCCAGGTGTGCCGCA +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCEVEGS*FSRCAA
Trigger: TGCGGCACACCTGGAAAAGCAACTGCCTTCCACTTC...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCCTTGTTGTCCTCTTCTaGCCCTGTCTTGTGAGCCAC +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCLVVLF*PCLVSH
Trigger: GTGGCTCACAAGACAGGGCCAGAAGAGGACAACAAG...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATCTGTACAATGAGGGGTaGGTAGCAAGCCTTGTTGTC +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHLYNEG*VASLVV
Trigger: GACAACAAGGCTTGCTACCCACCCCTCATTGTACAG...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCCCACACTCGAACTTGTaGTCAGCCTTGAGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCPHSNL*SALRQR
Trigger: TCTCTGCCTCAAGGCTGACCACAAGTTCGAGTGTGG...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATGTACCTATAACGGCATaGCCCATCTCACAGACGATC +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHVPITA*PISQTI
Trigger: GATCGTCTGTGAGATGGGCCATGCCGTTATAGGTAC...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTTGGGCTCCCATCTTTaGACACAGAGACCATCTCAT +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHLGSHL*TQRPSH
Trigger: ATGAGATGGTCTCTGTGTTCAAAGATGGGAGCCCAA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGTGTCTCAGACACAGTaGCTGTACAAGGTGTCTCTC +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDVSQTQ*LYKVSL
Trigger: GAGAGACACCTTGTACAGTCACTGTGTCTGAGACAC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCACTGGTTAGCTCATTaGTGTCTGTCTGAAGCTCCG +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDHWLAH*CLSEAP
Trigger: CGGAGCTTCAGACAGACATCAATGAGCTAACCAGTG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCTATTCTAGGCGACCCTaGAGGCCTGTCATGATGAGA +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCYSRRP*RPVMMR
Trigger: TCTCATCATGACAGGCCTTCAGGGTCGCCTAGAATA...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTTGCACAGTATAGCATaGAGAGTGGTTCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDLHSIA*RVVPQH
Trigger: GTGCTGGGGAACCACTCTTCATGCTATACTGTGCAA...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTGGTCACCATGGTCATaGTTCTTCACCAGATGCCAA +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHWSPWS*FFTRCQ
Trigger: TTGGCATCTGGTGAAGAATCATGACCATGGTGACCA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATGTACTTGCTGACATATaGGTAGATCTCGTTGAGGGC +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHVLADI*VDLVEG
Trigger: GCCCTCAACGAGATCTACTCATATGTCAGCAAGTAC...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTCTTTGCAAGGTAAGCTaGCTGCAGAAGGCGATATTC +
Preference number: 4 (lower is better)
Translates to: PEATLHFLTLLALCISILLCKVS*LQKAIF
Trigger: GAATATCGCCTTCTGCAGGCAGCTTACCTTGCAAAG...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCAACCGCTCCTTGATTTaGAAGTTGATGGCCCGGATG +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCNRSLI*KLMARM
Trigger: CATCCGGGCCATCAACTTGCAAATCAAGGAGCGGTT...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATGCTTTCCCGCTGGGCTaGACACTTGTAGAGATGTAC +
Preference number: 4 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYAFPLG*TLVEMY
Trigger: GTACATCTCTACAAGTGTGCAGCCCAGCGGGAAAGC...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGAAGTTATCATCGATTaGGACAGGCGCCTTGGTGCA +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDEVIID*DRRLGA
Trigger: TGCACCAAGGCGCCTGTCCCAATCGATGATAACTTC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTCAAGGCTCATGCACTaGCTGATACTGGCAGCAAAT +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHSRLMH*LILAAN
Trigger: ATTTGCTGCCAGTATCAGCCAGTGCATGAGCCTTGA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTAAATCCAAACTCATCTaGCCGTTCCACAGTGTCCAG +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFKSKLI*PFHSVQ
Trigger: CTGGACACTGTGGAACGGCCAGATGAGTTTGGATTT...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTTTCACTGGGATCTCTaGGCTGTTCTCATTGTCAGG +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHFHWDL*AVLIVR
Trigger: CCTGACAATGAGAACAGCCCAGAGATCCCAGTGAAA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATCACCCAGAAACGAAGTaGAAGGCAGTTGCTTTTCCA +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHHPETK*KAVAFP
Trigger: TGGAAAAGCAACTGCCTTCCACTTCGTTTCTGGGTG...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp GAGCTTGTCCCTTTCTCTCCCATACATTCAGGAACTTaGGTCCTGTTTGGTGGGGACCACACTTCTTTATGC +
Preference number: 4 (lower is better)
Translates to: ELVPFSPIHSGT*VLFGGDHTSLC
Trigger: GCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp CTTGGCTCAAGGCCTTCATGTGCCTGCATAAAGAGCTaGTCCCTTTCTCTCCCATACATTCAGGAACTTTGG +
Preference number: 4 (lower is better)
Translates to: LGSRPSCACIKS*SLSLPYIQELW
Trigger: CCAAAGTTCCTGAATGTATGGGAGAGAAAGGGACAAGCTCTTTATGCAGGCACATGAAGGCCTTGAGCCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCGAGACGCACAATTCTTaGGGTATAGAAGAGGTCTCC +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCETHNS*GIEEVS
Trigger: GGAGACCTCTTCTATACCTCAAGAATTGTGCGTCTC...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACACTCCCAGAGGCTGGTTaGTGTCCAGGCCGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTLPEAG*CPGRRS
Trigger: ACTTCTGCGGCCTGGACATCAACCAGCCTCTGGGAG...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTCCTTCAGGTGGTCCTaGTACTGTCAAAATCTCTGT +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHSFRWS*YCQNLC
Trigger: ACAGAGATTTTGACAGTATCAGGACCACCTGAAGGA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTCATTGATGTCTGTCTaGAGCTCCGCAAAAGCTTCC +
Preference number: 4 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDSLMSV*SSAKAS
Trigger: GGAAGCTTTTGCGGAGCTTCAGACAGACATCAATGA...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATGTTCCAGTGTACGGATaGAGGTCAGCAAGAACACCT +
Preference number: 4 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYVPVYG*RSARTP
Trigger: AGGTGTTCTTGCTGACCTTCATCCGTACACTGGAAC...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATCGGTGTACAGTCAAATaGTTGAAAGTCCAGTCACGA +
Preference number: 4 (lower is better)
Translates to: PAVSACCIRTASSLLCFYRCTVK*LKVQSR
Trigger: TCGTGACTGGACTTTCAACCATTTGACTGTACACCG...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATAGGCGGTCCCTGCTGGTaGTATACAGGGTCAGTCCCT +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIGGPCW*YTGSVP
Trigger: AGGGACTGACCCTGTATACCACCAGCAGGGACCGCC...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATACTGGGGCAGTGCTGGTaGAGGGTACATCTGCGCTCA +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMILGQCW*RVHLRS
Trigger: TGAGCGCAGATGTACCCTCCACCAGCACTGCCCCAG...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACAAAAGTATACTGCTGGTaGGACTTGGTCATGAACTCT +
Preference number: 4 (lower is better)
Translates to: TIPSCPPFVILLSSSLETKVYCW*DLVMNS
Trigger: AGAGTTCATGACCAAGTCCCACCAGCAGTATACTTT...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTGAGCAGTTCAAACGTTaGGTTGGGGTAGTAGATGAA +
Preference number: 4 (lower is better)
Translates to: PEATLHFLTLLALCISILEQFKR*VGVVDE
Trigger: TTCATCTACTACCCCAACCCAACGTTTGAACTGCTC...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACAGGACCGGAGGCTGTCTaGGCTGCCTGTGTACCTGAA +
Preference number: 4 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTGPEAV*AACVPE
Trigger: TTCAGGTACACAGGCAGCCCAGACAGCCTCCGGTCC...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTGTACAGTCAAATGGTTaGAAGTCCAGTCACGATTCT +
Preference number: 4 (lower is better)
Translates to: PEATLHFLTLLALCISILVQSNG*KSSHDS
Trigger: AGAATCGTGACTGGACTTTCAACCATTTGACTGTAC...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTGTACTTTCAGGTCCTaGGGGTTGTCAATAATGAAG +
Preference number: 4 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHCTFRS*GLSIMK
Trigger: CTTCATTATTGACAACCCTCAGGACCTGAAAGTACA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAAGTCCCCGGATCGGGCTaGGTGACAGCACAGAAGGAT +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKVPGSG*VTAQKD
Trigger: ATCCTTCTGTGCTGTCACTCAGCCCGATCCGGGGAC...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATAGAAGTGCTGGGGCAGTaGTGGTGGAGGGTACATCTG +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIEVLGQ*WWRVHL
Trigger: CAGATGTACCCTCCACCAGCACTGCCCCAGCACTTC...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACACCACAGACTCAGTCCTaGGGAGAAGCAGCTTGGGGT +
Preference number: 4 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTPQTQS*GEAAWG
Trigger: ACCCCAAGCTGCTTCTCCGCAGGACTGAGTCTGTGG...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGGTTGTCAGCCTGCATaGCCCGCAGATAGAACCTCC +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKGCQPA*PADRTS
Trigger: GGAGGTTCTATCTGCGGGCCATGCAGGCTGACAACC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCTCTTTCCTGTCTCTTTaGATCTCAGCTGCAGCTCTA +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCSFLSL*ISAAAL
Trigger: TAGAGCTGCAGCTGAGATCCAAAGAGACAGGAAAGA...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAATCCGTGGGCACGAGCTaGGGACAGTCCTCTGAAACA +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKSVGTS*GQSSET
Trigger: TGTTTCAGAGGACTGTCCCCAGCTCGTGCCCACGGA...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCTTTTACTTCCCCAACTaGGATCAGAATCTCCTCCGT +
Preference number: 4 (lower is better)
Translates to: LSSSLETDANCKAVGVGCFYFPN*DQNLLR
Trigger: ACGGAGGAGATTCTGATCCCAGTTGGGGAAGTAAAA...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAACTGGGCGGTAGTCACTaGTCAGAGAGGGTGCCAGAC +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKLGGSH*SERVPD
Trigger: GTCTGGCACCCTCTCTGACCAGTGACTACCGCCCAG...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATTTGTCCATTTGCATTTaGAGCCGCTTGAGTGTGAGG +
Preference number: 4 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYLSICI*SRLSVR
Trigger: CCTCACACTCAAGCGGCTCCAAATGCAAATGGACAA...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp TTCACCATTCCCTCATGCCCACCCTTTGTCATCCTCTaGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAA +
Preference number: 4 (lower is better)
Translates to: FTIPSCPPFVIL*SSSLETDANCK
Trigger: TTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp CCATCCTGCTGCTATATTGGTGGTAGGTCTAGCAGCTaGGAGAATCTGCATTTGCTGAAAGAAGGACCTTTG +
Preference number: 4 (lower is better)
Translates to: PSCCYIGGRSSS*ENLHLLKEGPL
Trigger: CAAAGGTCCTTCTTTCAGCAAATGCAGATTCTCCAAGCTGCTAGACCTACCACCAATATAGCAGCAGGATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp TTAGCTGTGACACAATGTGGTTGGAAAGGGTCCTTTTaGAGTAACTGCCAGCTTAGTATTGCCAGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: LAVTQCGWKGSF*SNCQLSIARQQ
Trigger: CTGCTGCCTGGCAATACTAAGCTGGCAGTTACTCAAAAAGGACCCTTTCCAACCACATTGTGTCACAGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp CTTTCTCTCCCATACATTCAGGAACTTTGGTCCTGTTaGGTGGGGACCACACTTCTTTATGCGTGGATGTCA +
Preference number: 4 (lower is better)
Translates to: LSLPYIQELWSC*VGTTLLYAWMS
Trigger: TGACATCCACGCATAAAGAAGTGTGGTCCCCACCAAACAGGACCAAAGTTCCTGAATGTATGGGAGAGAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACACTTGATCCAGAGGGATaGCAGGGACATCCTTGGGTC +
Preference number: 4 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTLDPEG*QGHPWV
Trigger: GACCCAAGGATGTCCCTGTCATCCCTCTGGATCAAG...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACAAGCTTCCCCTGGCTTTaGAAGGTAAGCTGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTSFPWL*KVSCLQ
Trigger: CTGCAGGCAGCTTACCTTGCAAAGCCAGGGGAAGCT...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATAACTCGAACTGCAGACTaGTATCCACCCGGGCTCTGT +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMITRTAD*YPPGLC
Trigger: ACAGAGCCCGGGTGGATAGCAGTCTGCAGTTCGAGT...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATATGGATGTCCGAGAGATaGTGGCAGAGGCAGGGATGT +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIWMSER*WQRQGC
Trigger: ACATCCCTGCCTCTGCCAGCATCTCTCGGACATCCA...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGCCGTCAGGGGTCTCTaGCTGGACAGTGAGAAAGTA +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKAVRGL*LDSEKV
Trigger: TACTTTCTCACTGTCCAGCCAGAGACCCCTGACGGC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTCCCAGGTTCACGCCATaGATGGTCACACGAGTCCCT +
Preference number: 4 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVPRFTP*MVTRVP
Trigger: AGGGACTCGTGTGACCATCCATGGCGTGAACCTGGG...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATATCTCTGGCTGGACAGTaGGAAAGTAGACAAACCCCC +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMISLAGQ*ESRQTP
Trigger: GGGGGTTTGTCTACTTTCTCACTGTCCAGCCAGAGA...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTTACAATCTCATTCATTaGCCTCCCATAGAATTCACA +
Preference number: 4 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFYNLIH*PPIEFT
Trigger: TGTGAATTCTATGGGAGGTCAATGAATGAGATTGTA...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAACTAGTCGCAGGAGCTTaGAAACACCCTGGTAGAGGC +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKLVAGA*KHPGRG
Trigger: GCCTCTACCAGGGTGTTTGCAAGCTCCTGCGACTAG...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATAGCTTTCTCCACGTGCTaGTGTCCATTTCCCTGTACC +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIAFSTC*CPFPCT
Trigger: GGTACAGGGAAATGGACAGCAGCACGTGGAGAAAGC...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATATTGCTTTTCCAGGTGTaGCGCACATCTGTGTCGTGG +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMILLFQV*RTSVSW
Trigger: CCACGACACAGATGTGCGGCACACCTGGAAAAGCAA...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAATCCCACGGTCTCGCATaGAGAAGCTGCGCTGTAGTT +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKSHGLA*RSCAVV
Trigger: AACTACAGCGCAGCTTCTCCATGCGAGACCGTGGGA...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp AGCTTGGAGAATCTGCATTTGCTGAAAGAAGGACCTTaGAGGTCTTATTCACCCTGGTCTGTAGGACCTTTA +
Preference number: 4 (lower is better)
Translates to: SLENLHLLKEGP*RSYSPWSVGPL
Trigger: TAAAGGTCCTACAGACCAGGGTGAATAAGACCTCAAAGGTCCTTCTTTCAGCAAATGCAGATTCTCCAAGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAAGTCCTCTGAAACATTaGTCCTGCCTTCCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKSPLKH*SCLPGR
Trigger: CCTTCCAGGAAGGCAGGATCAATGTTTCAGAGGACT...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATACAGGTAAGGGATTCCTaGTCGATCCAAGTCACTGGT +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIQVRDS*SIQVTG
Trigger: ACCAGTGACTTGGATCGATCAGGAATCCCTTACCTG...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACATAGGAGTGGAACTTaGGGTCATCCTTGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKHRSGT*GHPCRD
Trigger: GTCTCTGCAAGGATGACCCCAAGTTCCACTCCTATG...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAAGTGATACTCCACTCTaGCTCAATACGTTGGACCCG +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKSDTPL*LNTLDP
Trigger: CGGGTCCAACGTATTGAGCCAGAGTGGAGTATCACT...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp GTCAAAATGGAGACCAAGCGTGTCAAAATGATGACCTaGACTGAGTCTCAAAGAAGCTTCTTACTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: VKMETKRVKMMT*TESQRSFLLPS
Trigger: AGAAGGCAGTAAGAAGCTTCTTTGAGACTCAGTCAAGGTCATCATTTTGACACGCTTGGTCTCCATTTTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAATAGGTATAGCTGATTaGTGGAGAAGGCCATGTCCC +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKIGIAD*WRRPCP
Trigger: GGGACATGGCCTTCTCCATCAATCAGCTATACCTAT...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTGCCCCTTGGAGAAGATaGCAAACAGGACATCTTCGT +
Preference number: 4 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVAPWRR*QTGHLR
Trigger: ACGAAGATGTCCTGTTTGCCATCTTCTCCAAGGGGC...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTGAACACTTGACATTGTaGCTGGACCAGTCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVEHLTL*LDQSSQ
Trigger: CTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTC...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp TCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAACACTTGGTCATGAACTCTaGCTTGCATTCCCCAATGCA +
Preference number: 4 (lower is better)
Translates to: STFFDLLSSHHSLHTLQTLGHEL*LAFPNA
Trigger: TGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAG...TGTTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATATGTATACTGTTCACATaGTTCAACAGGGACCCTGGT +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMICILFT*FNRDPG
Trigger: ACCAGGGTCCCTGTTGAATCATGTGAACAGTATACA...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGGTTGGGGTAGTAGATaGACTTGGTGTCGTTATAGA +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKGWGSR*TWCRYR
Trigger: TCTATAACGACACCAAGTTCATCTACTACCCCAACC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTCTGTGTCTGTCTGCCTaGTCATCCAGGAAATCAAAC +
Preference number: 4 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVLCLSA*SSRKSN
Trigger: GTTTGATTTCCTGGATGAGCAGGCAGACAGACACAG...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTGATACTGTGTCTGTCTaGCTGCTCATCCAGGAAATC +
Preference number: 4 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVDTVSV*LLIQEI
Trigger: GATTTCCTGGATGAGCAGGCAGACAGACACAGTATC...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTCCTCACTGTACTTGCTaGCATATGAGTAGATCTCGT +
Preference number: 4 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVPHCTC*HMSRSR
Trigger: ACGAGATCTACTCATATGTCAGCAAGTACAGTGAGG...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAAGAGCTGTTTTGGCACTaGACACTGGAACTGTTGAAA +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKELFWH*TLELLK
Trigger: TTTCAACAGTTCCAGTGTGCAGTGCCAAAACAGCTC...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAAGGGCCTTTTTCCATCTaGTGCTTGATTGCACAGTAT +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKGPFSI*CLIAQY
Trigger: ATACTGTGCAATCAAGCAGCAGATGGAAAAAGGCCC...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR TCA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAACCTGTCTCTCAGACATaGCATATAGGTATAGCTGAT +
Preference number: 4 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKPVSQT*HIGIAD
Trigger: ATCAGCTATACCTATATGTCATGTCTGAGAGACAGG...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR GCA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGAGCTTGGCAATATCTaGATAGTATCTTTCTACCCA +
Preference number: 4 (lower is better)
Translates to: HLHSLICSLPIILSILSKELGNI*IVSFYP
Trigger: TGGGTAGAAAGATACTATGCAGATATTGCCAAGCTC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CCA 90 bp GGGAGTAGACTATCAGTGACTAGTAAACTAAAGCAAAGAACTGGTGGAATGATAAAAATCTCTGTGATTTaGGGGTTGGAACACTTGACA +
Preference number: 4 (lower is better)
Translates to: GSRLSVTSKLKQRTGGMIKISVI*GLEHLT
Trigger: TGTCAAGTGTTCCAACCCCCAAATCACAGAGATTTT...TATCATTCCACCAGTTCTTTGCTTTAGTTTACTAGTCACTGATAGTCTACTCCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
3UTR CAA 72 bp CTGCACTCTATAAAGAAAGAGGGATCAGAAGTAATTTaGAGATTCAAACCACAGAAAGAGGTAGAACATCAG +
Preference number: 4 (lower is better)
Translates to: LHSIKKEGSEVI*RFKPQKEVEHQ
Trigger: CTGATGTTCTACCTCTTTCTGTGGTTTGAATCTCAAAATTACTTCTGATCCCTCTTTCTTTATAGAGTGCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp TGGCAGGGTCAACAGGCTGTCGGAGATGACGCTCACGGAGCCAGGTaGGAACACCATCCCGCCCACGTGAACCATGACCTTGTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: WQGQQAVGDDAHGAR*EHHPAHVNHDLVLP
Trigger: GGGCAGCACAAGGTCATGGTTCACGTGGGCGGGATGGTGTTCTCACCTGGCTCCGTGAGCGTCATCTCCGACAGCCTGTTGACCCTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp TTGTGGCTGGACCAGTCAAGCCAGGGGCTAGAAGTGCTGGGGCAGTaGTGGTGGAGGGTACATCTGCGCTCACCACTGCACCAGCCACAC +
Preference number: 5 (lower is better)
Translates to: LWLDQSSQGLEVLGQ*WWRVHLRSPLHQPH
Trigger: GTGTGGCTGGTGCAGTGGTGAGCGCAGATGTACCCTCCACCAGCACTGCCCCAGCACTTCTAGCCCCTGGCTTGACTGGTCCAGCCACAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027952.12
ENSMUST00000135664.2
CDS CCA 90 bp CTGGACCAGTCAAGCCAGGGGCTAGAAGTGCTGGGGCAGTGCTGGTaGAGGGTACATCTGCGCTCACCACTGCACCAGCCACACTCGAAC +
Preference number: 5 (lower is better)
Translates to: LDQSSQGLEVLGQCW*RVHLRSPLHQPHSN
Trigger: GTTCGAGTGTGGCTGGTGCAGTGGTGAGCGCAGATGTACCCTCCACCAGCACTGCCCCAGCACTTCTAGCCCCTGGCTTGACTGGTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000027952.12
ENSMUST00000135664.2
CDS CCA 90 bp CATTGTAAACATAGGAGGCCACAGAGGTCAGGCGGTCCCTGCTGGTaGTATACAGGGTCAGTCCCTCCACAGGAGTGGAGCCTCCCAGAG +
Preference number: 5 (lower is better)
Translates to: HCKHRRPQRSGGPCW*YTGSVPPQEWSLPE
Trigger: CTCTGGGAGGCTCCACTCCTGTGGAGGGACTGACCCTGTATACCACCAGCAGGGACCGCCTGACCTCTGTGGCCTCCTATGTTTACAATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp AGCCATTGTAAACATAGGAGGCCACAGAGGTCAGGCGGTCCCTGCTaGTGGTATACAGGGTCAGTCCCTCCACAGGAGTGGAGCCTCCCA +
Preference number: 5 (lower is better)
Translates to: SHCKHRRPQRSGGPC*WYTGSVPPQEWSLP
Trigger: TGGGAGGCTCCACTCCTGTGGAGGGACTGACCCTGTATACCACCAGCAGGGACCGCCTGACCTCTGTGGCCTCCTATGTTTACAATGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp TGTAGCCATTGTAAACATAGGAGGCCACAGAGGTCAGGCGGTCCCTaGTGGTGGTATACAGGGTCAGTCCCTCCACAGGAGTGGAGCCTC +
Preference number: 5 (lower is better)
Translates to: CSHCKHRRPQRSGGP*WWYTGSVPPQEWSL
Trigger: GAGGCTCCACTCCTGTGGAGGGACTGACCCTGTATACCACCAGCAGGGACCGCCTGACCTCTGTGGCCTCCTATGTTTACAATGGCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTGGGTCACGGGGCAGCTaGCGGCTGGACAGAGTAGGG +
Preference number: 5 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFGSRGS*RLDRVG
Trigger: CCCTACTCTGTCCAGCCGCAAGCTGCCCCGTGACCC...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGAGGTCTCCAGCTGAATaGATGGCCATGCCGTCAGGG +
Preference number: 5 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQRSPAE*MAMPSG
Trigger: CCCTGACGGCATGGCCATCAATTCAGCTGGAGACCT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp GAGGGAGGAGACAAAATCACTGTGGAGCTCATAGTCCAGCATTGCTaGAGACTCAGGGTCACGGGGCAGCTTGCGGCTGGACAGAGTAGG +
Preference number: 5 (lower is better)
Translates to: EGGDKITVELIVQHC*RLRVTGQLAAGQSR
Trigger: CCTACTCTGTCCAGCCGCAAGCTGCCCCGTGACCCTGAGTCTTCAGCAATGCTGGACTATGAGCTCCACAGTGATTTTGTCTCCTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp GGGCTGTACAATGAGGGGTGGGTAGCAAGCCTTGTTGTCCTCTTCTaGCCCTGTCTTGTGAGCCACCTGGATGGTGAGGTTGCCAGTCAA +
Preference number: 5 (lower is better)
Translates to: GLYNEGWVASLVVLF*PCLVSHLDGEVASQ
Trigger: TTGACTGGCAACCTCACCATCCAGGTGGCTCACAAGACAGGGCCAGAAGAGGACAACAAGGCTTGCTACCCACCCCTCATTGTACAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp GTTGGGAGCATCATTCACAACCAGGCTGAGCAGCCGGCTGTGATCTaGCACAGAGATGCTGTTGGGGTGTACCTCAAGGCTCATGCACTG +
Preference number: 5 (lower is better)
Translates to: VGSIIHNQAEQPAVI*HRDAVGVYLKAHAL
Trigger: CAGTGCATGAGCCTTGAGGTACACCCCAACAGCATCTCTGTGTCAGATCACAGCCGGCTGCTCAGCCTGGTTGTGAATGATGCTCCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp GAGAGGTTGGGAGCATCATTCACAACCAGGCTGAGCAGCCGGCTGTaGTCTGACACAGAGATGCTGTTGGGGTGTACCTCAAGGCTCATG +
Preference number: 5 (lower is better)
Translates to: ERLGASFTTRLSSRL*SDTEMLLGCTSRLM
Trigger: CATGAGCCTTGAGGTACACCCCAACAGCATCTCTGTGTCAGATCACAGCCGGCTGCTCAGCCTGGTTGTGAATGATGCTCCCAACCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp CAATACGTTGGACCCGTGGGTCATCTATATACTCGAACTGCAGACTaGTATCCACCCGGGCTCTGTCGACACTCACGGAGACAGGGACTG +
Preference number: 5 (lower is better)
Translates to: QYVGPVGHLYTRTAD*YPPGLCRHSRRQGL
Trigger: CAGTCCCTGTCTCCGTGAGTGTCGACAGAGCCCGGGTGGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp CACTGGCTGATACTGGCAGCAAATCGATTTGCTTCCCAGGCCCGTTaGCATTTGTCTCTTCGGGAGCACATGTTGTGCAGGGCACACCAG +
Preference number: 5 (lower is better)
Translates to: HWLILAANRFASQAR*HLSLREHMLCRAHQ
Trigger: CTGGTGTGCCCTGCACAACATGTGCTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp GGCACGAGCTGGGGACAGTCCTCTGAAACATTGATCCTGCCTTCCTaGAAGGAACAGGTAGTGGGGTCATGTGTGCAGAGGTTACGGTAC +
Preference number: 5 (lower is better)
Translates to: GTSWGQSSETLILPS*KEQVVGSCVQRLRY
Trigger: GTACCGTAACCTCTGCACACATGACCCCACTACCTGTTCCTTCCAGGAAGGCAGGATCAATGTTTCAGAGGACTGTCCCCAGCTCGTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTCCTCCCAGAGGCTGGTaGATGTCCAGGCCGCAGAAG +
Preference number: 5 (lower is better)
Translates to: PEATLHFLTLLALCISILPPRGW*MSRPQK
Trigger: CTTCTGCGGCCTGGACATCAACCAGCCTCTGGGAGG...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCATGACAGGGACATCCTaGGGTCCAGGTGAGATGCAG +
Preference number: 5 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSAMTGTS*GPGEMQ
Trigger: CTGCATCTCACCTGGACCCAAGGATGTCCCTGTCAT...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCCAGAGGTTACGGTACTaGCACCAATGGCAGCGGAAG +
Preference number: 5 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSAQRLRY*HQWQRK
Trigger: CTTCCGCTGCCATTGGTGCAAGTACCGTAACCTCTG...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACACCGGTGGACAGCCCCTaGAATGCTGAGCACACACTC +
Preference number: 5 (lower is better)
Translates to: TIPSCPPFVILLSSSLETPVDSP*NAEHTL
Trigger: GAGTGTGTGCTCAGCATTCAAGGGGCTGTCCACCGG...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGGTCATGAACTCTGGCTaGCATTCCCCAATGCACAGG +
Preference number: 5 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQVMNSG*HSPMHR
Trigger: CCTGTGCATTGGGGAATGCAAGCCAGAGTTCATGAC...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGACCCTGGACTCCAGGTaGTCCATTTGCATTTGGAGC +
Preference number: 5 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQTLDSR*SICIWS
Trigger: GCTCCAAATGCAAATGGACAACCTGGAGTCCAGGGT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AGGCATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTCGAAGTGGAAGGCAGTaGCTTTTCCAGGTGTGCCGC +
Preference number: 5 (lower is better)
Translates to: RHQEDLTTSSSLLPTIRSRSGRQ*LFQVCR
Trigger: GCGGCACACCTGGAAAAGCAACTGCCTTCCACTTCG...AGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp TGGTTGAAAGTCCAGTCACGATTCTCAGAGTGGAAAGTGCTGTACTaGGGCATACCTGTGGTCCCACGAGCTAGCAGGAGCCAGGCCACT +
Preference number: 5 (lower is better)
Translates to: WLKVQSRFSEWKVLY*GIPVVPRASRSQAT
Trigger: AGTGGCCTGGCTCCTGCTAGCTCGTGGGACCACAGGTATGCCTCAGTACAGCACTTTCCACTCTGAGAATCGTGACTGGACTTTCAACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp TCTGGCTCAATACGTTGGACCCGTGGGTCATCTATATACTCGAACTaGAGACTGCTATCCACCCGGGCTCTGTCGACACTCACGGAGACA +
Preference number: 5 (lower is better)
Translates to: SGSIRWTRGSSIYSN*RLLSTRALSTLTET
Trigger: TGTCTCCGTGAGTGTCGACAGAGCCCGGGTGGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp TTCCACAGTGTCCAGACCTGGGCGGTAGTCACTGGTCAGAGAGGGTaGCAGACAGGTGAGGGTGGTTGTGTTTACCACTGTGCATACATT +
Preference number: 5 (lower is better)
Translates to: FHSVQTWAVVTGQRG*QTGEGGCVYHCAYI
Trigger: AATGTATGCACAGTGGTAAACACAACCACCCTCACCTGTCTGGCACCCTCTCTGACCAGTGACTACCGCCCAGGTCTGGACACTGTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp GTGCCCACTAGTGATACTCCACTCTGGCTCAATACGTTGGACCCGTaGGTCATCTATATACTCGAACTGCAGACTGCTATCCACCCGGGC +
Preference number: 5 (lower is better)
Translates to: VPTSDTPLWLNTLDP*VIYILELQTAIHPG
Trigger: GCCCGGGTGGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGGAGTATCACTAGTGGGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCTCCTTGATTTGCAAGTaGATGGCCCGGATGGGGAAG +
Preference number: 5 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSASLICK*MARMGK
Trigger: CTTCCCCATCCGGGCCATCAACTTGCAAATCAAGGA...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATCTTCGGGAGCACATGTaGTGCAGGGCACACCAGCCA +
Preference number: 5 (lower is better)
Translates to: PAVSACCIRTASSLLCFYLREHM*CRAHQP
Trigger: TGGCTGGTGTGCCCTGCACAACATGTGCTCCCGAAG...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CTCAGCGATGATGTATTCCCCTGGGATAGGTGTGCAGGGCACTCCAGCCACCTGTCTGTGATTTGGGGGTaGGAACACTTGACATTGTGG +
Preference number: 5 (lower is better)
Translates to: LSDDVFPWDRCAGHSSHLSVIWG*EHLTLW
Trigger: CCACAATGTCAAGTGTTCCAACCCCCAAATCACAGA...CAGGTGGCTGGAGTGCCCTGCACACCTATCCCAGGGGAATACATCATCGCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR CAA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGTCTATGGACATGGCGTaGATGAGATGCTCCACCTTG +
Preference number: 5 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQSMDMA*MRCSTL
Trigger: CAAGGTGGAGCATCTCATCAACGCCATGTCCATAGA...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp ACACAGAGATGCTGTTGGGGTGTACCTCAAGGCTCATGCACTGGCTaGTACTGGCAGCAAATCGATTTGCTTCCCAGGCCCGTTGGCATT +
Preference number: 5 (lower is better)
Translates to: TQRCCWGVPQGSCTG*YWQQIDLLPRPVGI
Trigger: AATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGCATGAGCCTTGAGGTACACCCCAACAGCATCTCTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp GATGAGGACAATGATGACGATGATAAGAAGGAGGCTTCCACCAGCTaGGATGCTGATGATGGCTGGCAGGGTCAACAGGCTGTCGGAGAT +
Preference number: 5 (lower is better)
Translates to: DEDNDDDDKKEASTS*DADDGWQGQQAVGD
Trigger: ATCTCCGACAGCCTGTTGACCCTGCCAGCCATCATCAGCATCGCAGCTGGTGGAAGCCTCCTTCTTATCATCGTCATCATTGTCCTCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTGCCTCTGGGCCCAAGGATGGAGCCTTGGCCTCTGCTTGGAAGCTATACTCAGATTGGGCTCCCATCTTaGAACACAGAGACCATCTCA +
Preference number: 5 (lower is better)
Translates to: LPLGPRMEPWPLLGSYTQIGLPS*NTETIS
Trigger: TGAGATGGTCTCTGTGTTCAAAGATGGGAGCCCAAT...CTGAGTATAGCTTCCAAGCAGAGGCCAAGGCTCCATCCTTGGGCCCAGAGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATTGCTTCCCAGGCCCGTaGGCATTTGTCTCTTCGGGA +
Preference number: 5 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHCFPGP*AFVSSG
Trigger: TCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCA...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CATCAGGAGGACCTGACCACCTCTTCCAGCCTTCTTCCCACCATAAGATCTGCCCAGTCCTCTGAAACATaGATCCTGCCTTCCTGGAAG +
Preference number: 5 (lower is better)
Translates to: HQEDLTTSSSLLPTIRSAQSSET*ILPSWK
Trigger: CTTCCAGGAAGGCAGGATCAATGTTTCAGAGGACTG...GGCAGATCTTATGGTGGGAAGAAGGCTGGAAGAGGTGGTCAGGTCCTCCTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp GGCATGGCCCATCTCACAGACGATCTGCTCAGCGATGATGTATTCCCCTGGGATTTGGAACACTTGACATaGTGGCTGGACCAGTCAAGC +
Preference number: 5 (lower is better)
Translates to: GMAHLTDDLLSDDVFPWDLEHLT*WLDQSS
Trigger: GCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAA...ATCCCAGGGGAATACATCATCGCTGAGCAGATCGTCTGTGAGATGGGCCATGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS-3UTR CAA 90 bp TATAACGGCATGGCCCATCTCACAGACGATCTGCTCAGCGATGATGTATTCCCCTGGGGGTTGGAACACTaGACATTGTGGCTGGACCAG +
Preference number: 5 (lower is better)
Translates to: YNGMAHLTDDLLSDDVFPWGLEH*TLWLDQ
Trigger: CTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCA...GGGGAATACATCATCGCTGAGCAGATCGTCTGTGAGATGGGCCATGCCGTTATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS TCA 90 bp CACTGGACAAGTAGTGTTCCTTCTTGTGGGATGGCTCCACCAGGATaGAGAGGTCATCTAGTCGCAGGAGCTTGCAAACACCCTGGTAGA +
Preference number: 5 (lower is better)
Translates to: HWTSSVPSCGMAPPG*RGHLVAGACKHPGR
Trigger: TCTACCAGGGTGTTTGCAAGCTCCTGCGACTAGATGACCTCTTCATCCTGGTGGAGCCATCCCACAAGAAGGAACACTACTTGTCCAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp CCCCCTCAGAGCGCACAATCACACCATACATGGTGCCTGTCTTATTaGCACTGGACAAGTAGTGTTCCTTCTTGTGGGATGGCTCCACCA +
Preference number: 5 (lower is better)
Translates to: PPQSAQSHHTWCLSY*HWTSSVPSCGMAPP
Trigger: TGGTGGAGCCATCCCACAAGAAGGAACACTACTTGTCCAGTGTCAATAAGACAGGCACCATGTATGGTGTGATTGTGCGCTCTGAGGGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp TACCTCAAGGCTCATGCACTGGCTGATACTGGCAGCAAATCGATTTaGTTCCCAGGCCCGTTGGCATTTGTCTCTTCGGGAGCACATGTT +
Preference number: 5 (lower is better)
Translates to: YLKAHALADTGSKSI*FPGPLAFVSSGAHV
Trigger: AACATGTGCTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGCATGAGCCTTGAGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp ACATTCACCCAGAAACGAAGTGGAAGGCAGTTGCTTTTCCAGGTGTaGCGCACATCTGTGTCGTGGATACTGTGTCTGTCTGCCTGCTCA +
Preference number: 5 (lower is better)
Translates to: TFTQKRSGRQLLFQV*RTSVSWILCLSACS
Trigger: TGAGCAGGCAGACAGACACAGTATCCACGACACAGATGTGCGGCACACCTGGAAAAGCAACTGCCTTCCACTTCGTTTCTGGGTGAATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp AGGATTCACAAAAGTATACTGCTGGTGGGACTTGGTCATGAACTCTaGCTTGCATTCCCCAATGCACAGGCGCACAGGCCCAGATGTGGT +
Preference number: 5 (lower is better)
Translates to: RIHKSILLVGLGHEL*LAFPNAQAHRPRCG
Trigger: ACCACATCTGGGCCTGTGCGCCTGTGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp GGGCTCTGTCGACACTCACGGAGACAGGGACTGGTCCTAGTCCATTaGATGATGGGGGTGAAACACATACAATCTCATTCATTGACCTCC +
Preference number: 5 (lower is better)
Translates to: GLCRHSRRQGLVLVH*MMGVKHIQSHSLTS
Trigger: GGAGGTCAATGAATGAGATTGTATGTGTTTCACCCCCATCATCCAATGGACTAGGACCAGTCCCTGTCTCCGTGAGTGTCGACAGAGCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp AGGGGTGTGTGCCCACTAGTGATACTCCACTCTGGCTCAATACGTTaGACCCGTGGGTCATCTATATACTCGAACTGCAGACTGCTATCC +
Preference number: 5 (lower is better)
Translates to: RGVCPLVILHSGSIR*TRGSSIYSNCRLLS
Trigger: GGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGGAGTATCACTAGTGGGCACACACCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTTTTCCCAGCAGCCAGTaGAGCTCCAAGTTGCCCTCT +
Preference number: 5 (lower is better)
Translates to: PEATLHFLTLLALCISILFPSSQ*SSKLPS
Trigger: AGAGGGCAACTTGGAGCTCAACTGGCTGCTGGGAAA...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATTGGGGGTTGGAACACTaGACATTGTGGCTGGACCAG +
Preference number: 5 (lower is better)
Translates to: PAVSACCIRTASSLLCFYWGLEH*TLWLDQ
Trigger: CTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCA...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACATACTGCTGGTGGGACTaGGTCATGAACTCTGGCTTG +
Preference number: 5 (lower is better)
Translates to: TIPSCPPFVILLSSSLETYCWWD*VMNSGL
Trigger: CAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTA...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp AGCCAAAAGGCAGGGACACATAGGAGTGGAACTTGGGGTCATCCTTaGAGAGACGCACAATTCTTGAGGTATAGAAGAGGTCTCCAGCTG +
Preference number: 5 (lower is better)
Translates to: SQKAGTHRSGTWGHP*RDAQFLRYRRGLQL
Trigger: CAGCTGGAGACCTCTTCTATACCTCAAGAATTGTGCGTCTCTGCAAGGATGACCCCAAGTTCCACTCCTATGTGTCCCTGCCTTTTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp CAGCACGTGTGCAGCCAAAAGGCAGGGACACATAGGAGTGGAACTTaGGGTCATCCTTGCAGAGACGCACAATTCTTGAGGTATAGAAGA +
Preference number: 5 (lower is better)
Translates to: QHVCSQKAGTHRSGT*GHPCRDAQFLRYRR
Trigger: TCTTCTATACCTCAAGAATTGTGCGTCTCTGCAAGGATGACCCCAAGTTCCACTCCTATGTGTCCCTGCCTTTTGGCTGCACACGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATAGAAGTTATCATCGATaGGGACAGGCGCCTTGGTGC +
Preference number: 5 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHRSYHR*GQAPWC
Trigger: GCACCAAGGCGCCTGTCCCAATCGATGATAACTTCT...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTACAGGACAGGCACAGTaGGTGGGCACTGCAGTTATA +
Preference number: 5 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFTGQAQ*VGTAVI
Trigger: TATAACTGCAGTGCCCACCAACTGTGCCTGTCCTGT...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACAAAGTCCACTGCTAGGTaGCTGATGTCCATCCCATCA +
Preference number: 5 (lower is better)
Translates to: TIPSCPPFVILLSSSLETKSTAR*LMSIPS
Trigger: TGATGGGATGGACATCAGCAACCTAGCAGTGGACTT...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTCTCTGGCTCAATACGTaGGACCCGTGGGTCATCTAT +
Preference number: 5 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFLWLNT*DPWVIY
Trigger: ATAGATGACCCACGGGTCCAACGTATTGAGCCAGAG...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp CCCCCACATACACAGCCCCTGTTCTTCGGTGTACAGTCAAATGGTTaGAAGTCCAGTCACGATTCTCAGAGTGGAAAGTGCTGTACTGAG +
Preference number: 5 (lower is better)
Translates to: PPHTQPLFFGVQSNG*KSSHDSQSGKCCTE
Trigger: CTCAGTACAGCACTTTCCACTCTGAGAATCGTGACTGGACTTTCAACCATTTGACTGTACACCGAAGAACAGGGGCTGTGTATGTGGGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 90 bp CCAGGTAAGGGATTCCTGATCGATCCAAGTCACTGGTTAGCTCATTaGTGTCTGTCTGAAGCTCCGCAAAAGCTTCCTTGCACTCCAGTG +
Preference number: 5 (lower is better)
Translates to: PGKGFLIDPSHWLAH*CLSEAPQKLPCTPV
Trigger: CACTGGAGTGCAAGGAAGCTTTTGCGGAGCTTCAGACAGACATCAATGAGCTAACCAGTGACTTGGATCGATCAGGAATCCCTTACCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTACTGCTTCTGCCCCTaGGAGAAGATGGCAAACAGG +
Preference number: 5 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDYCFCP*EKMANR
Trigger: CCTGTTTGCCATCTTCTCCAAGGGGCAGAAGCAGTA...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACCAACCGCTCCTTGATTaGCAAGTTGATGGCCCGGAT +
Preference number: 5 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDQPLLD*QVDGPD
Trigger: ATCCGGGCCATCAACTTGCAAATCAAGGAGCGGTTG...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AACAGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACGACTGCAACCGCTCCTaGATTTGCAAGTTGATGGCC +
Preference number: 5 (lower is better)
Translates to: NSKNSDQSTFSPLHQGVDDCNRS*ICKLMA
Trigger: GGCCATCAACTTGCAAATCAAGGAGCGGTTGCAGTC...GTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATTCTTTGCCATTAAATTaGACTCGGACCCTGGGCTCC +
Preference number: 5 (lower is better)
Translates to: PAVSACCIRTASSLLCFYSLPLN*TRTLGS
Trigger: GGAGCCCAGGGTCCGAGTCAAATTTAATGGCAAAGA...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACACAGTCACCCTCTATTTaGGTGGTAATGTCTTCGTCC +
Preference number: 5 (lower is better)
Translates to: TIPSCPPFVILLSSSLETQSPSI*VVMSSS
Trigger: GGACGAAGACATTACCACCAAAATAGAGGGTGACTG...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp ATACAATCTCATTCATTGACCTCCCATAGAATTCACAGGTCTGATTaGCCAGGTACACTGCCACACTGCTCCCAGCACCAAGGTAATGGC +
Preference number: 5 (lower is better)
Translates to: IQSHSLTSHRIHRSD*PGTLPHCSQHQGNG
Trigger: GCCATTACCTTGGTGCTGGGAGCAGTGTGGCAGTGTACCTGGGCAATCAGACCTGTGAATTCTATGGGAGGTCAATGAATGAGATTGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 90 bp ATAGCCCCCACATACACAGCCCCTGTTCTTCGGTGTACAGTCAAATaGTTGAAAGTCCAGTCACGATTCTCAGAGTGGAAAGTGCTGTAC +
Preference number: 5 (lower is better)
Translates to: IAPTYTAPVLRCTVK*LKVQSRFSEWKVLY
Trigger: GTACAGCACTTTCCACTCTGAGAATCGTGACTGGACTTTCAACCATTTGACTGTACACCGAAGAACAGGGGCTGTGTATGTGGGGGCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATAACTTGGGGTCATCCTaGCAGAGACGCACAATTCTT +
Preference number: 5 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHNLGSS*QRRTIL
Trigger: AAGAATTGTGCGTCTCTGCAAGGATGACCCCAAGTT...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCTGAAGCCACTTTGCATTTCCTCACCCTCCTGGCCCTCTGTATCTCAATTCTTTCTGTGATTTGGGGGTaGGAACACTTGACATTGTGG +
Preference number: 5 (lower is better)
Translates to: PEATLHFLTLLALCISILSVIWG*EHLTLW
Trigger: CCACAATGTCAAGTGTTCCAACCCCCAAATCACAGA...AAGAATTGAGATACAGAGGGCCAGGAGGGTGAGGAAATGCAAAGTGGCTTCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TGTGATGGGTGGTGTTCACTGTCCTTCTGGAAGGAACCGGCTGTGATGAAACATAGAGACGCACAATTCTaGAGGTATAGAAGAGGTCTC +
Preference number: 5 (lower is better)
Translates to: CDGWCSLSFWKEPAVMKHRDAQF*RYRRGL
Trigger: GAGACCTCTTCTATACCTCAAGAATTGTGCGTCTCT...ATGTTTCATCACAGCCGGTTCCTTCCAGAAGGACAGTGAACACCACCCATCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATACTGGTCCTAGTCCATaGGATGATGGGGGTGAAACA +
Preference number: 5 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYTGPSP*DDGGET
Trigger: TGTTTCACCCCCATCATCCAATGGACTAGGACCAGT...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp GTTTCAGAGGATAGCCAGCTCTGGGGTCTGATACCCTTCACTCATCCCATCTTTCACTCCTTCAGGAACTaGTGTAGAAGAAAAGCAAAC +
Preference number: 5 (lower is better)
Translates to: VSEDSQLWGLIPFTHPIFHSFRN*CRRKAN
Trigger: GTTTGCTTTTCTTCTACACAAGTTCCTGAAGGAGTG...AAAGATGGGATGAGTGAAGGGTATCAGACCCCAGAGCTGGCTATCCTCTGAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATGTAGGCATTCATATCTaGGTCACTAATGGCTGGGAG +
Preference number: 5 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYVGIHI*VTNGWE
Trigger: CTCCCAGCCATTAGTGACCAAGATATGAATGCCTAC...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp ACCATTCCCTCATGCCCACCCTTTGTCATCCTCTTGTCCTCCTCCCTAGAAACATCAATGATCAGTAGTTaGTTGACATTGTTGGTGAGT +
Preference number: 5 (lower is better)
Translates to: TIPSCPPFVILLSSSLETSMISS*LTLLVS
Trigger: ACTCACCAACAATGTCAACAAACTACTGATCATTGA...TGTTTCTAGGGAGGAGGACAAGAGGATGACAAAGGGTGGGCATGAGGGAATGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CCAGCAGTCTCTGCTTGTTGTATCAGGACTGCTAGCAGCCTCCTCTGCTTTTATGACACTCTCCACAAGTaGTATACTGTTCACATGATT +
Preference number: 5 (lower is better)
Translates to: PAVSACCIRTASSLLCFYDTLHK*YTVHMI
Trigger: AATCATGTGAACAGTATACAACTTGTGGAGAGTGTC...ATAAAAGCAGAGGAGGCTGCTAGCAGTCCTGATACAACAAGCAGAGACTGCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAAGACACAGAGATGCTGTaGGGGTGTACCTCAAGGCTC +
Preference number: 5 (lower is better)
Translates to: HLHSLICSLPIILSILSKDTEML*GCTSRL
Trigger: GAGCCTTGAGGTACACCCCAACAGCATCTCTGTGTC...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTGTCCTCCTCCCTAGAAACAGATGCTAATTGCAAAGCTGTTGGAGTTGGCTGCAGTTTGTTGACATTGTaGGTGAGTGTAAGCACTTCA +
Preference number: 5 (lower is better)
Translates to: LSSSLETDANCKAVGVGCSLLTL*VSVSTS
Trigger: TGAAGTGCTTACACTCACCAACAATGTCAACAAACT...GCAGCCAACTCCAACAGCTTTGCAATTAGCATCTGTTTCTAGGGAGGAGGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATAGTAGTTTGTTGACATaGTTGGTGAGTGTAAGCACT +
Preference number: 5 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYSSLLT*LVSVST
Trigger: AGTGCTTACACTCACCAACAATGTCAACAAACTACT...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAAGCTCATAGTCCAGCATaGCTGAAGACTCAGGGTCAC +
Preference number: 5 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKAHSPA*LKTQGH
Trigger: GTGACCCTGAGTCTTCAGCAATGCTGGACTATGAGC...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATACCACTGTGCATACATaGACAGATTCTTTGCCATTA +
Preference number: 5 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYTTVHT*TDSLPL
Trigger: TAATGGCAAAGAATCTGTCAATGTATGCACAGTGGT...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAAACCAGATGCCAAACCTaGACACCGCTCTCCAAGTCT +
Preference number: 5 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKTRCQT*TPLSKS
Trigger: AGACTTGGAGAGCGGTGTCAAGGTTTGGCATCTGGT...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 90 bp GGCATTCATATCTTGGTCACTAATGGCTGGGAGCTTGGCAATATCTaGATAGTATCTTTCTACCCAGTTCTTATAACTGGGGATATCCTT +
Preference number: 5 (lower is better)
Translates to: GIHILVTNGWELGNI*IVSFYPVLITGDIL
Trigger: AAGGATATCCCCAGTTATAAGAACTGGGTAGAAAGATACTATGCAGATATTGCCAAGCTCCCAGCCATTAGTGACCAAGATATGAATGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAATTGGAACACTTGACATaGTGGCTGGACCAGTCAAGC +
Preference number: 5 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKLEHLT*WLDQSS
Trigger: GCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAA...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp AGCAAGAACAGTGACCAATCAACTTTCTCTCCTCTCCACCAGGGAGTAGACTATACATTGACAGATTCTTaGCCATTAAATTTGACTCGG +
Preference number: 5 (lower is better)
Translates to: SKNSDQSTFSPLHQGVDYTLTDS*PLNLTR
Trigger: CCGAGTCAAATTTAATGGCAAAGAATCTGTCAATGT...ATAGTCTACTCCCTGGTGGAGAGGAGAGAAAGTTGATTGGTCACTGTTCTTGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp ATCAAATTAAACAAAAGTTGGACGGGATGGACAGGGAGGATTTATGTTTCTGTTTGCATTTGGAGCCGCTaGAGTGTGAGGTCATTTTCC +
Preference number: 5 (lower is better)
Translates to: IKLNKSWTGWTGRIYVSVCIWSR*SVRSFS
Trigger: GGAAAATGACCTCACACTCAAGCGGCTCCAAATGCA...AACAGAAACATAAATCCTCCCTGTCCATCCCGTCCAACTTTTGTTTAATTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp TTTCCATACTGGTTCTACTCAGCATCTCTCAGGTATTTTTCTGACATTGAGAAAATCTTTCCTGTCTCTTaGGATCTCAGCTGCAGCTCT +
Preference number: 5 (lower is better)
Translates to: FPYWFYSASLRYFSDIEKIFPVS*DLSCSS
Trigger: AGAGCTGCAGCTGAGATCCAAAGAGACAGGAAAGAT...TTTCTCAATGTCAGAAAAATACCTGAGAGATGCTGAGTAGAACCAGTATGGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS-3UTR CAA 90 bp CATCTACATTCTTTGATTTGCTCTCTTCCCATCATTCTCTCCATACTCTCCAAATGTACAGTCAAATGGTaGAAAGTCCAGTCACGATTC +
Preference number: 5 (lower is better)
Translates to: HLHSLICSLPIILSILSKCTVKW*KVQSRF
Trigger: GAATCGTGACTGGACTTTCAACCATTTGACTGTACA...TTTGGAGAGTATGGAGAGAATGATGGGAAGAGAGCAAATCAAAGAATGTAGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TCTTCGTCCTGCAACACCACTCTGGCAATCCGGCCTTaGCGCCACTCCAGATCCATGTCCACAGCCCTTGGC +
Preference number: 6 (lower is better)
Translates to: SSSCNTTLAIRP*RHSRSMSTALG
Trigger: GCCAAGGGCTGTGGACATGGATCTGGAGTGGCGCCAAGGCCGGATTGCCAGAGTGGTGTTGCAGGACGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp GTCTTCGTCCTGCAACACCACTCTGGCAATCCGGCCTaGGCGCCACTCCAGATCCATGTCCACAGCCCTTGG +
Preference number: 6 (lower is better)
Translates to: VFVLQHHSGNPA*APLQIHVHSPW
Trigger: CCAAGGGCTGTGGACATGGATCTGGAGTGGCGCCAAGGCCGGATTGCCAGAGTGGTGTTGCAGGACGAAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp CAACAGGCTGTCGGAGATGACGCTCACGGAGCCAGGTaGGAACACCATCCCGCCCACGTGAACCATGACCTT +
Preference number: 6 (lower is better)
Translates to: QQAVGDDAHGAR*EHHPAHVNHDL
Trigger: AAGGTCATGGTTCACGTGGGCGGGATGGTGTTCTCACCTGGCTCCGTGAGCGTCATCTCCGACAGCCTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp AAACATAGGAGGCCACAGAGGTCAGGCGGTCCCTGCTaGTGGTATACAGGGTCAGTCCCTCCACAGGAGTGG +
Preference number: 6 (lower is better)
Translates to: KHRRPQRSGGPC*WYTGSVPPQEW
Trigger: CCACTCCTGTGGAGGGACTGACCCTGTATACCACCAGCAGGGACCGCCTGACCTCTGTGGCCTCCTATGTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp TGTAAACATAGGAGGCCACAGAGGTCAGGCGGTCCCTaGTGGTGGTATACAGGGTCAGTCCCTCCACAGGAG +
Preference number: 6 (lower is better)
Translates to: CKHRRPQRSGGP*WWYTGSVPPQE
Trigger: CTCCTGTGGAGGGACTGACCCTGTATACCACCAGCAGGGACCGCCTGACCTCTGTGGCCTCCTATGTTTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp CCTTGGTGCACTGCACATCCTTTCCCAGCAGCCAGTTaGGCTCCAAGTTGCCCTCTCCATGGTAGCAGGACT +
Preference number: 6 (lower is better)
Translates to: PWCTAHPFPAAS*APSCPLHGSRT
Trigger: AGTCCTGCTACCATGGAGAGGGCAACTTGGAGCTCAACTGGCTGCTGGGAAAGGATGTGCAGTGCACCAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp GGACCCGTGGGTCATCTATATACTCGAACTGCAGACTaGTATCCACCCGGGCTCTGTCGACACTCACGGAGA +
Preference number: 6 (lower is better)
Translates to: GPVGHLYTRTAD*YPPGLCRHSRR
Trigger: TCTCCGTGAGTGTCGACAGAGCCCGGGTGGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp CCAACTGGGATCAGAATCTCCTCCGTGGGCACGAGCTaGGGACAGTCCTCTGAAACATTGATCCTGCCTTCC +
Preference number: 6 (lower is better)
Translates to: PTGIRISSVGTS*GQSSETLILPS
Trigger: GGAAGGCAGGATCAATGTTTCAGAGGACTGTCCCCAGCTCGTGCCCACGGAGGAGATTCTGATCCCAGTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TCGGGCCTTAAGGGTGATTGGTTTTACTTCCCCAACTaGGATCAGAATCTCCTCCGTGGGCACGAGCTGGGG +
Preference number: 6 (lower is better)
Translates to: SGLKGDWFYFPN*DQNLLRGHELG
Trigger: CCCCAGCTCGTGCCCACGGAGGAGATTCTGATCCCAGTTGGGGAAGTAAAACCAATCACCCTTAAGGCCCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 90 bp GCACTGGCTGATACTGGCAGCAAATCGATTTGCTTCCCAGGCCCGTaGGCATTTGTCTCTTCGGGAGCACATGTTGTGCAGGGCACACCA +
Preference number: 6 (lower is better)
Translates to: ALADTGSKSICFPGP*AFVSSGAHVVQGTP
Trigger: TGGTGTGCCCTGCACAACATGTGCTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 90 bp AGGCTTTGCAGTCCCAGAGCCTCTGTGATTTGGGGGTTGGAACACTaGACATTGTGGCTGGACCAGTCAAGCCAGGGGCTAGAAGTGCTG +
Preference number: 6 (lower is better)
Translates to: RLCSPRASVIWGLEH*TLWLDQSSQGLEVL
Trigger: CAGCACTTCTAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCTGGGACTGCAAAGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS CAA 90 bp ACAGACACCAGGCTTTGCAGTCCCAGAGCCTCTGTGATTTGGGGGTaGGAACACTTGACATTGTGGCTGGACCAGTCAAGCCAGGGGCTA +
Preference number: 6 (lower is better)
Translates to: TDTRLCSPRASVIWG*EHLTLWLDQSSQGL
Trigger: TAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCTGGGACTGCAAAGCCTGGTGTCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS TCA 72 bp GACAAAATCACTGTGGAGCTCATAGTCCAGCATTGCTaGAGACTCAGGGTCACGGGGCAGCTTGCGGCTGGA +
Preference number: 6 (lower is better)
Translates to: DKITVELIVQHC*RLRVTGQLAAG
Trigger: TCCAGCCGCAAGCTGCCCCGTGACCCTGAGTCTTCAGCAATGCTGGACTATGAGCTCCACAGTGATTTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp TGCTGTTGGGGTGTACCTCAAGGCTCATGCACTGGCTaGTACTGGCAGCAAATCGATTTGCTTCCCAGGCCC +
Preference number: 6 (lower is better)
Translates to: CCWGVPQGSCTG*YWQQIDLLPRP
Trigger: GGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGCATGAGCCTTGAGGTACACCCCAACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp GGAGCATCATTCACAACCAGGCTGAGCAGCCGGCTGTaGTCTGACACAGAGATGCTGTTGGGGTGTACCTCA +
Preference number: 6 (lower is better)
Translates to: GASFTTRLSSRL*SDTEMLLGCTS
Trigger: TGAGGTACACCCCAACAGCATCTCTGTGTCAGATCACAGCCGGCTGCTCAGCCTGGTTGTGAATGATGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp GCAGCTCTAGGCCAAACCAGTCTTGATCCAGAGGGATaGCAGGGACATCCTTGGGTCCAGGTGAGATGCAGA +
Preference number: 6 (lower is better)
Translates to: AALGQTSLDPEG*QGHPWVQVRCR
Trigger: TCTGCATCTCACCTGGACCCAAGGATGTCCCTGTCATCCCTCTGGATCAAGACTGGTTTGGCCTAGAGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp ATAAGCTGGGCGAAGAGTTTCAGGGCTTTCTCCACGTaGTGCTGTCCATTTCCCTGTACCTCCAGTTCCCGC +
Preference number: 6 (lower is better)
Translates to: ISWAKSFRAFST*CCPFPCTSSSR
Trigger: GCGGGAACTGGAGGTACAGGGAAATGGACAGCAGCACGTGGAGAAAGCCCTGAAACTCTTCGCCCAGCTTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp CAGTCACCCTCTATTTTGGTGGTAATGTCTTCGTCCTaGAACACCACTCTGGCAATCCGGCCTTGGCGCCAC +
Preference number: 6 (lower is better)
Translates to: QSPSILVVMSSS*NTTLAIRPWRH
Trigger: GTGGCGCCAAGGCCGGATTGCCAGAGTGGTGTTGCAGGACGAAGACATTACCACCAAAATAGAGGGTGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp AATGAGGGGTGGGTAGCAAGCCTTGTTGTCCTCTTCTaGCCCTGTCTTGTGAGCCACCTGGATGGTGAGGTT +
Preference number: 6 (lower is better)
Translates to: NEGWVASLVVLF*PCLVSHLDGEV
Trigger: AACCTCACCATCCAGGTGGCTCACAAGACAGGGCCAGAAGAGGACAACAAGGCTTGCTACCCACCCCTCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp GCCTCTGTGATTTGGGGGTTGGAACACTTGACATTGTaGCTGGACCAGTCAAGCCAGGGGCTAGAAGTGCTG +
Preference number: 6 (lower is better)
Translates to: ASVIWGLEHLTL*LDQSSQGLEVL
Trigger: CAGCACTTCTAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS CCA 72 bp GACACCAGGCTTTGCAGTCCCAGAGCCTCTGTGATTTaGGGGTTGGAACACTTGACATTGTGGCTGGACCAG +
Preference number: 6 (lower is better)
Translates to: DTRLCSPRASVI*GLEHLTLWLDQ
Trigger: CTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCTGGGACTGCAAAGCCTGGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS CAA 72 bp GCAGCAAATCGATTTGCTTCCCAGGCCCGTTGGCATTaGTCTCTTCGGGAGCACATGTTGTGCAGGGCACAC +
Preference number: 6 (lower is better)
Translates to: AANRFASQARWH*SLREHMLCRAH
Trigger: GTGTGCCCTGCACAACATGTGCTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp CAGGTAGTGGGGTCATGTGTGCAGAGGTTACGGTACTaGCACCAATGGCAGCGGAAGGCGCTGTTAACACAG +
Preference number: 6 (lower is better)
Translates to: QVVGSCVQRLRY*HQWQRKALLTQ
Trigger: CTGTGTTAACAGCGCCTTCCGCTGCCATTGGTGCAAGTACCGTAACCTCTGCACACATGACCCCACTACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp GTATACTGCTGGTGGGACTTGGTCATGAACTCTGGCTaGCATTCCCCAATGCACAGGCGCACAGGCCCAGAT +
Preference number: 6 (lower is better)
Translates to: VYCWWDLVMNSG*HSPMHRRTGPD
Trigger: ATCTGGGCCTGTGCGCCTGTGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp AGTCCCAGAGCCTCTGTGATTTGGGGGTTGGAACACTaGACATTGTGGCTGGACCAGTCAAGCCAGGGGCTA +
Preference number: 6 (lower is better)
Translates to: SPRASVIWGLEH*TLWLDQSSQGL
Trigger: TAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCTGGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS TCA 72 bp AGAAGGCCATGTCCCGGAGGATTGGGCTCCCATCTTTaGACACAGAGACCATCTCATACTGGACCCCACCAT +
Preference number: 6 (lower is better)
Translates to: RRPCPGGLGSHL*TQRPSHTGPHH
Trigger: ATGGTGGGGTCCAGTATGAGATGGTCTCTGTGTTCAAAGATGGGAGCCCAATCCTCCGGGACATGGCCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp AAGTTATCATCGATTGGGACAGGCGCCTTGGTGCACTaGACATCCTTTCCCAGCAGCCAGTTGAGCTCCAAG +
Preference number: 6 (lower is better)
Translates to: KLSSIGTGALVH*TSFPSSQLSSK
Trigger: CTTGGAGCTCAACTGGCTGCTGGGAAAGGATGTGCAGTGCACCAAGGCGCCTGTCCCAATCGATGATAACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp GCTCATGCACTGGCTGATACTGGCAGCAAATCGATTTaGTTCCCAGGCCCGTTGGCATTTGTCTCTTCGGGA +
Preference number: 6 (lower is better)
Translates to: AHALADTGSKSI*FPGPLAFVSSG
Trigger: TCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGCATGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp ATACGTTGGACCCGTGGGTCATCTATATACTCGAACTaGAGACTGCTATCCACCCGGGCTCTGTCGACACTC +
Preference number: 6 (lower is better)
Translates to: IRWTRGSSIYSN*RLLSTRALSTL
Trigger: GAGTGTCGACAGAGCCCGGGTGGATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TGTAAGCACTTCACTGCAGGGCTGTACAATGAGGGGTaGGTAGCAAGCCTTGTTGTCCTCTTCTGGCCCTGT +
Preference number: 6 (lower is better)
Translates to: CKHFTAGLYNEG*VASLVVLFWPC
Trigger: ACAGGGCCAGAAGAGGACAACAAGGCTTGCTACCCACCCCTCATTGTACAGCCCTGCAGTGAAGTGCTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TGGGGACAGTCCTCTGAAACATTGATCCTGCCTTCCTaGAAGGAACAGGTAGTGGGGTCATGTGTGCAGAGG +
Preference number: 6 (lower is better)
Translates to: WGQSSETLILPS*KEQVVGSCVQR
Trigger: CCTCTGCACACATGACCCCACTACCTGTTCCTTCCAGGAAGGCAGGATCAATGTTTCAGAGGACTGTCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp AAAAGTATACTGCTGGTGGGACTTGGTCATGAACTCTaGCTTGCATTCCCCAATGCACAGGCGCACAGGCCC +
Preference number: 6 (lower is better)
Translates to: KSILLVGLGHEL*LAFPNAQAHRP
Trigger: GGGCCTGTGCGCCTGTGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp AGAGCCTCTGTGATTTGGGGGTTGGAACACTTGACATaGTGGCTGGACCAGTCAAGCCAGGGGCTAGAAGTG +
Preference number: 6 (lower is better)
Translates to: RASVIWGLEHLT*WLDQSSQGLEV
Trigger: CACTTCTAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS CAA 72 bp AGGCTTTGCAGTCCCAGAGCCTCTGTGATTTGGGGGTaGGAACACTTGACATTGTGGCTGGACCAGTCAAGC +
Preference number: 6 (lower is better)
Translates to: RLCSPRASVIWG*EHLTLWLDQSS
Trigger: GCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCTGGGACTGCAAAGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS CAA 72 bp AGACACCAGGCTTTGCAGTCCCAGAGCCTCTGTGATTaGGGGGTTGGAACACTTGACATTGTGGCTGGACCA +
Preference number: 6 (lower is better)
Translates to: RHQALQSQSLCD*GVGTLDIVAGP
Trigger: TGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGGCTCTGGGACTGCAAAGCCTGGTGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000135664.2
CDS TCA 72 bp CCATGGTACCTCCTGACTCTGGTCCCCGGATCGGGCTaGGTGACAGCACAGAAGGATTCACAAAAGTATACT +
Preference number: 6 (lower is better)
Translates to: PWYLLTLVPGSG*VTAQKDSQKYT
Trigger: AGTATACTTTTGTGAATCCTTCTGTGCTGTCACTCAGCCCGATCCGGGGACCAGAGTCAGGAGGTACCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp AGGAGGACAGAGATTTTTGCCCTTCAGGATGATGGGTaGGCCTGGCTTCTGATCCAAGATTCCAGTGGGGCT +
Preference number: 6 (lower is better)
Translates to: RRTEIFALQDDG*AWLLIQDSSGA
Trigger: AGCCCCACTGGAATCTTGGATCAGAAGCCAGGCTCACCCATCATCCTGAAGGGCAAAAATCTCTGTCCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp AATGATGACGATGATAAGAAGGAGGCTTCCACCAGCTaGGATGCTGATGATGGCTGGCAGGGTCAACAGGCT +
Preference number: 6 (lower is better)
Translates to: NDDDDKKEASTS*DADDGWQGQQA
Trigger: AGCCTGTTGACCCTGCCAGCCATCATCAGCATCGCAGCTGGTGGAAGCCTCCTTCTTATCATCGTCATCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TGCAGCCAAAAGGCAGGGACACATAGGAGTGGAACTTaGGGTCATCCTTGCAGAGACGCACAATTCTTGAGG +
Preference number: 6 (lower is better)
Translates to: CSQKAGTHRSGT*GHPCRDAQFLR
Trigger: CCTCAAGAATTGTGCGTCTCTGCAAGGATGACCCCAAGTTCCACTCCTATGTGTCCCTGCCTTTTGGCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp ATACTGGCAGCAAATCGATTTGCTTCCCAGGCCCGTTaGCATTTGTCTCTTCGGGAGCACATGTTGTGCAGG +
Preference number: 6 (lower is better)
Translates to: ILAANRFASQAR*HLSLREHMLCR
Trigger: CCTGCACAACATGTGCTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp GAGATGCTGTTGGGGTGTACCTCAAGGCTCATGCACTaGCTGATACTGGCAGCAAATCGATTTGCTTCCCAG +
Preference number: 6 (lower is better)
Translates to: EMLLGCTSRLMH*LILAANRFASQ
Trigger: CTGGGAAGCAAATCGATTTGCTGCCAGTATCAGCCAGTGCATGAGCCTTGAGGTACACCCCAACAGCATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp ATCTCTGTGATTTGGGGGTTGGAACACTTGACATTGTaGCTGGACCAGTCAAGCCAGGGGCTAGAAGTGCTG +
Preference number: 6 (lower is better)
Translates to: ISVIWGLEHLTL*LDQSSQGLEVL
Trigger: CAGCACTTCTAGCCCCTGGCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp GATACTGGCAGCAAATCGATTTGCTTCCCAGGCCCGTaGGCATTTGTCTCTTCGGGAGCACATGTTGTGCAG +
Preference number: 6 (lower is better)
Translates to: DTGSKSICFPGP*AFVSSGAHVVQ
Trigger: CTGCACAACATGTGCTCCCGAAGAGACAAATGCCAACGGGCCTGGGAAGCAAATCGATTTGCTGCCAGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp AGATTCCCAAAGGCACAAGCAATACCTTCAGAGAGGTaGGGAGCATCATTCACAACCAGGCTGAGCAGCCGG +
Preference number: 6 (lower is better)
Translates to: RFPKAQAIPSER*GASFTTRLSSR
Trigger: CCGGCTGCTCAGCCTGGTTGTGAATGATGCTCCCAACCTCTCTGAAGGTATTGCTTGTGCCTTTGGGAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 90 bp TTCACAAAAGTATACTGCTGGTGGGACTTGGTCATGAACTCTGGCTaGCATTCCCCAATGCACAGGCGCACAGGCCCAGATGTGGTACCT +
Preference number: 6 (lower is better)
Translates to: FTKVYCWWDLVMNSG*HSPMHRRTGPDVVP
Trigger: AGGTACCACATCTGGGCCTGTGCGCCTGTGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 90 bp CGGGCTCTGTCGACACTCACGGAGACAGGGACTGGTCCTAGTCCATaGGATGATGGGGGTGAAACACATACAATCTCATTCATTGACCTC +
Preference number: 6 (lower is better)
Translates to: RALSTLTETGTGPSP*DDGGETHTISFIDL
Trigger: GAGGTCAATGAATGAGATTGTATGTGTTTCACCCCCATCATCCAATGGACTAGGACCAGTCCCTGTCTCCGTGAGTGTCGACAGAGCCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp AGTAGTGTTCCTTCTTGTGGGATGGCTCCACCAGGATaGAGAGGTCATCTAGTCGCAGGAGCTTGCAAACAC +
Preference number: 6 (lower is better)
Translates to: SSVPSCGMAPPG*RGHLVAGACKH
Trigger: GTGTTTGCAAGCTCCTGCGACTAGATGACCTCTTCATCCTGGTGGAGCCATCCCACAAGAAGGAACACTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp CATTCATTGACCTCCCATAGAATTCACAGGTCTGATTaGCCAGGTACACTGCCACACTGCTCCCAGCACCAA +
Preference number: 6 (lower is better)
Translates to: HSLTSHRIHRSD*PGTLPHCSQHQ
Trigger: TTGGTGCTGGGAGCAGTGTGGCAGTGTACCTGGGCAATCAGACCTGTGAATTCTATGGGAGGTCAATGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp CAGAAACGAAGTGGAAGGCAGTTGCTTTTCCAGGTGTaGCGCACATCTGTGTCGTGGATACTGTGTCTGTCT +
Preference number: 6 (lower is better)
Translates to: QKRSGRQLLFQV*RTSVSWILCLS
Trigger: AGACAGACACAGTATCCACGACACAGATGTGCGGCACACCTGGAAAAGCAACTGCCTTCCACTTCGTTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TCCACTGCTAGGTTGCTGATGTCCATCCCATCATACTaGTACGAGCTGTTTTGGCACTGCACACTGGAACTG +
Preference number: 6 (lower is better)
Translates to: STARLLMSIPSY*YELFWHCTLEL
Trigger: CAGTTCCAGTGTGCAGTGCCAAAACAGCTCGTACCAGTATGATGGGATGGACATCAGCAACCTAGCAGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp GTGCCCACTAGTGATACTCCACTCTGGCTCAATACGTaGGACCCGTGGGTCATCTATATACTCGAACTGCAG +
Preference number: 6 (lower is better)
Translates to: VPTSDTPLWLNT*DPWVIYILELQ
Trigger: CTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGGAGTATCACTAGTGGGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 90 bp AGTGACAGCACAGAAGGATTCACAAAAGTATACTGCTGGTGGGACTaGGTCATGAACTCTGGCTTGCATTCCCCAATGCACAGGCGCACA +
Preference number: 6 (lower is better)
Translates to: SDSTEGFTKVYCWWD*VMNSGLHSPMHRRT
Trigger: TGTGCGCCTGTGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAATCCTTCTGTGCTGTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp GCAGGGACACATAGGAGTGGAACTTGGGGTCATCCTTaGAGAGACGCACAATTCTTGAGGTATAGAAGAGGT +
Preference number: 6 (lower is better)
Translates to: AGTHRSGTWGHP*RDAQFLRYRRG
Trigger: ACCTCTTCTATACCTCAAGAATTGTGCGTCTCTGCAAGGATGACCCCAAGTTCCACTCCTATGTGTCCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp ACATCCAAGTTGAAGCCTGTGATGGTTAGGGGTGTGTaGCCACTAGTGATACTCCACTCTGGCTCAATACGT +
Preference number: 6 (lower is better)
Translates to: TSKLKPVMVRGV*PLVILHSGSIR
Trigger: ACGTATTGAGCCAGAGTGGAGTATCACTAGTGGGCACACACCCCTAACCATCACAGGCTTCAACTTGGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp CGACACTCACGGAGACAGGGACTGGTCCTAGTCCATTaGATGATGGGGGTGAAACACATACAATCTCATTCA +
Preference number: 6 (lower is better)
Translates to: RHSRRQGLVLVH*MMGVKHIQSHS
Trigger: TGAATGAGATTGTATGTGTTTCACCCCCATCATCCAATGGACTAGGACCAGTCCCTGTCTCCGTGAGTGTCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TGCCCACTAGTGATACTCCACTCTGGCTCAATACGTTaGACCCGTGGGTCATCTATATACTCGAACTGCAGA +
Preference number: 6 (lower is better)
Translates to: CPLVILHSGSIR*TRGSSIYSNCR
Trigger: TCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGGAGTATCACTAGTGGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp TCGACACTCACGGAGACAGGGACTGGTCCTAGTCCATaGGATGATGGGGGTGAAACACATACAATCTCATTC +
Preference number: 6 (lower is better)
Translates to: STLTETGTGPSP*DDGGETHTISF
Trigger: GAATGAGATTGTATGTGTTTCACCCCCATCATCCAATGGACTAGGACCAGTCCCTGTCTCCGTGAGTGTCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp GGATTCCTGATCGATCCAAGTCACTGGTTAGCTCATTaGTGTCTGTCTGAAGCTCCGCAAAAGCTTCCTTGC +
Preference number: 6 (lower is better)
Translates to: GFLIDPSHWLAH*CLSEAPQKLPC
Trigger: GCAAGGAAGCTTTTGCGGAGCTTCAGACAGACATCAATGAGCTAACCAGTGACTTGGATCGATCAGGAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp TCAGGTGGTCCTGATACTGTCAAAATCTCTGTGATTTaGGGGTTGGAACACTTGACATTGTGGCTGGACCAG +
Preference number: 6 (lower is better)
Translates to: SGGPDTVKISVI*GLEHLTLWLDQ
Trigger: CTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGATTTTGACAGTATCAGGACCACCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp AGTGATACTCCACTCTGGCTCAATACGTTGGACCCGTaGGTCATCTATATACTCGAACTGCAGACTGCTATC +
Preference number: 6 (lower is better)
Translates to: SDTPLWLNTLDP*VIYILELQTAI
Trigger: GATAGCAGTCTGCAGTTCGAGTATATAGATGACCCACGGGTCCAACGTATTGAGCCAGAGTGGAGTATCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp AGTGAGGATCCCCTGAGCTTAGACACTCTCCACAAGTaGTATACTGTTCACATGATTCAACAGGGACCCTGG +
Preference number: 6 (lower is better)
Translates to: SEDPLSLDTLHK*YTVHMIQQGPW
Trigger: CCAGGGTCCCTGTTGAATCATGTGAACAGTATACAACTTGTGGAGAGTGTCTAAGCTCAGGGGATCCTCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp TTGCCATTCCATACTACAGCAAAGTCCACTGCTAGGTaGCTGATGTCCATCCCATCATACTGGTACGAGCTG +
Preference number: 6 (lower is better)
Translates to: LPFHTTAKSTAR*LMSIPSYWYEL
Trigger: CAGCTCGTACCAGTATGATGGGATGGACATCAGCAACCTAGCAGTGGACTTTGCTGTAGTATGGAATGGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp GGTCCTGATACTGTCAAAATCTCTGTGATTTGGGGGTaGGAACACTTGACATTGTGGCTGGACCAGTCAAGC +
Preference number: 6 (lower is better)
Translates to: GPDTVKISVIWG*EHLTLWLDQSS
Trigger: GCTTGACTGGTCCAGCCACAATGTCAAGTGTTCCAACCCCCAAATCACAGAGATTTTGACAGTATCAGGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp AGCGCACAATCACACCATACATGGTGCCTGTCTTATTaGCACTGGACAAGTAGTGTTCCTTCTTGTGGGATG +
Preference number: 6 (lower is better)
Translates to: SAQSHHTWCLSY*HWTSSVPSCGM
Trigger: CATCCCACAAGAAGGAACACTACTTGTCCAGTGTCAATAAGACAGGCACCATGTATGGTGTGATTGTGCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp TGGGAGGTTCACAAAGCAGCTGTGTCTCAGACACAGTaGCTGTACAAGGTGTCTCTCCAATCATTACTGTGT +
Preference number: 6 (lower is better)
Translates to: WEVHKAAVSQTQ*LYKVSLQSLLC
Trigger: ACACAGTAATGATTGGAGAGACACCTTGTACAGTCACTGTGTCTGAGACACAGCTGCTTTGTGAACCTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS GCA 72 bp CTGAGTGACAGCACAGAAGGATTCACAAAAGTATACTaGTGGTGGGACTTGGTCATGAACTCTGGCTTGCAT +
Preference number: 6 (lower is better)
Translates to: LSDSTEGFTKVY*WWDLVMNSGLH
Trigger: ATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAATCCTTCTGTGCTGTCACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CCA 72 bp AGTGACAGCACAGAAGGATTCACAAAAGTATACTGCTaGTGGGACTTGGTCATGAACTCTGGCTTGCATTCC +
Preference number: 6 (lower is better)
Translates to: SDSTEGFTKVYC*WDLVMNSGLHS
Trigger: GGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAATCCTTCTGTGCTGTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp TTGAATTCGGTGCTGACAAAGATCTTTCCTGTCTCTTaGGATCTCAGCTGCAGCTCTAGGCCAAACCAGTCT +
Preference number: 6 (lower is better)
Translates to: LNSVLTKIFPVS*DLSCSSRPNQS
Trigger: AGACTGGTTTGGCCTAGAGCTGCAGCTGAGATCCAAAGAGACAGGAAAGATCTTTGTCAGCACCGAATTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp ACAGAAGGATTCACAAAAGTATACTGCTGGTGGGACTaGGTCATGAACTCTGGCTTGCATTCCCCAATGCAC +
Preference number: 6 (lower is better)
Translates to: TEGFTKVYCWWD*VMNSGLHSPMH
Trigger: GTGCATTGGGGAATGCAAGCCAGAGTTCATGACCAAGTCCCACCAGCAGTATACTTTTGTGAATCCTTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 90 bp ATAATGAAGTTGCCATTCCATACTACAGCAAAGTCCACTGCTAGGTaGCTGATGTCCATCCCATCATACTGGTACGAGCTGTTTTGGCAC +
Preference number: 6 (lower is better)
Translates to: IMKLPFHTTAKSTAR*LMSIPSYWYELFWH
Trigger: GTGCCAAAACAGCTCGTACCAGTATGATGGGATGGACATCAGCAACCTAGCAGTGGACTTTGCTGTAGTATGGAATGGCAACTTCATTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS TCA 72 bp CATTCCATACTACAGCAAAGTCCACTGCTAGGTTGCTaGTGTCCATCCCATCATACTGGTACGAGCTGTTTT +
Preference number: 6 (lower is better)
Translates to: HSILQQSPLLGC*CPSHHTGTSCF
Trigger: AAAACAGCTCGTACCAGTATGATGGGATGGACATCAGCAACCTAGCAGTGGACTTTGCTGTAGTATGGAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12
CDS CAA 72 bp TGGATGATGGGGGTGAAACACATACAATCTCATTCATaGACCTCCCATAGAATTCACAGGTCTGATTGCCCA +
Preference number: 6 (lower is better)
Translates to: WMMGVKHIQSHS*TSHRIHRSDCP
Trigger: TGGGCAATCAGACCTGTGAATTCTATGGGAGGTCAATGAATGAGATTGTATGTGTTTCACCCCCATCATCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027952.12