Pregenerated sensors for PLSCR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032372Ensembl transcript IDs: ENSMUST00000034932.14, ENSMUST00000113044.3, ENSMUST00000180154.8
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTCTGTCCTCTTTCATTaGTTCCTACTGCAGGTCGGA | + |
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Preference number: 2 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLSVLFH*FLLQVG Trigger: TCCGACCTGCAGTAGGAATCAATGAAAGAGGACAGA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| 3UTR-3UTR CAA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTCTCTGTCCTCTTTCATaGATTCCTACTGCAGGTCGG | + |
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Preference number: 3 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLLCPLS*IPTAGR Trigger: CCGACCTGCAGTAGGAATCAATGAAAGAGGACAGAG...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTGCTAGCCTGAGGTCCTaGATAACCAGACTGGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLASLRS*ITRLGN Trigger: GTTCCCCAGTCTGGTTATCCAGGACCTCAGGCTAGC...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTACCCCTGGAGGAGCCTaGATTTCTATCTCCTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLTPGGA*ISISWR Trigger: CCTCCAGGAGATAGAAATCCAGGCTCCTCCAGGGGT...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTGAGCTTTGGCAGACATaGGTGCCAGGTCTGAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLELWQT*VPGLSH Trigger: GTGACTCAGACCTGGCACCCATGTCTGCCAAAGCTC...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTCCTTGGACTGCTGCTaGAGGATACTGAGGGGCATA | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLSLDCC*RILRGI Trigger: TATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTGCAGTTCAGAATAGGTaGTGGTGCTGGCATCCACTG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLAVQNR*WCWHPL Trigger: CAGTGGATGCCAGCACCACCACCTATTCTGAACTGC...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTAGTCACATAACCTATTaGCACCCCTGGAGGAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLSHITY*HPWRSL Trigger: CAGGCTCCTCCAGGGGTGCCAATAGGTTATGTGACT...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| 3UTR CAA 72 bp | TCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTaGTGTAGACTTCAGATCTTCTCTGTCCTCTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SKSPRSLNHMIS*CRLQIFSVLFH Trigger: ATGAAAGAGGACAGAGAAGATCTGAAGTCTACACAAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR TCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTCCCTCTTGTCGTTCTaGAGAGTGAGCTTTGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLSLLSF*RVSFGR Trigger: TCTGCCAAAGCTCACTCTTCAGAACGACAAGAGGGA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTAATAGGTGGTGGTGCTaGCATCCACTGAGTGTTTGC | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLNRWWC*HPLSVC Trigger: GCAAACACTCAGTGGATGCCAGCACCACCACCTATT...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTGTTCAGAATAGGTGGTaGTGCTGGCATCCACTGAGT | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLVQNRW*CWHPLS Trigger: ACTCAGTGGATGCCAGCACCACCACCTATTCTGAAC...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTGGATTTCTATCTCCTaGAGGCAGCAAGGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLWISIS*RQQGKQ Trigger: CTGCTTCCCTTGCTGCCTCCAGGAGATAGAAATCCA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR TCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTTCATGTCCAGATGTTaGGACTGTGTAGCTAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLFMSRC*DCVASL Trigger: CAGGCTAGCTACACAGTCTCAACATCTGGACATGAA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR GCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTATCTGAACAGCAGGTaGATGCAACACATGGACCAA | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLYLNSR*MQHMDQ Trigger: TTGGTCCATGTGTTGCATGCACCTGCTGTTCAGATA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTAGGTCTAGCGGGAATTaGATCCCAAAGTTATCCGAA | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLRSSGN*IPKLSE Trigger: TTCGGATAACTTTGGGATCCAATTCCCGCTAGACCT...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR TCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTAAAACATGTAATCTATaGGGAAGCAAGCACCAAGCG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLKTCNL*GSKHQA Trigger: CGCTTGGTGCTTGCTTCCTCATAGATTACATGTTTT...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR TCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTGCCCGAGGCTGTTCTTaGTTTCAAATTTGTTATTTG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLARGCS*FQICYL Trigger: CAAATAACAAATTTGAAATCAAGAACAGCCTCGGGC...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR GCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTCATCCACTGAGTGTTTaGAAGGACTATAGTCTGATT | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLHPLSV*KDYSLI Trigger: AATCAGACTATAGTCCTTGCAAACACTCAGTGGATG...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR TCA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTCTTCATCAAGAGACTTaGTCTCAAAGTCAATATCTG | + |
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Preference number: 4 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLLHQET*SQSQYL Trigger: CAGATATTGACTTTGAGATCAAGTCTCTTGATGAAG...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS GCA 90 bp | CTGGAATGTGGGGCGTCCAGTATGCTCTGGAGGTCCTTGGACTGCTaGTGGAGGATACTGAGGGGCATACCCAGCTGGCAAGTATGTTCC | + |
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Preference number: 5 (lower is better) Translates to: LECGASSMLWRSLDC*WRILRGIPSWQVCS Trigger: GGAACATACTTGCCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGCCCCACATTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS GCA 90 bp | AGTCTGGAATGTGGGGCGTCCAGTATGCTCTGGAGGTCCTTGGACTaGTGCTGGAGGATACTGAGGGGCATACCCAGCTGGCAAGTATGT | + |
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Preference number: 5 (lower is better) Translates to: SLECGASSMLWRSLD*CWRILRGIPSWQVC Trigger: ACATACTTGCCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGCCCCACATTCCAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS CCA 90 bp | GGGAACTTGGTAGTTAGTCTGGAATGTGGGGCGTCCAGTATGCTCTaGAGGTCCTTGGACTGCTGCTGGAGGATACTGAGGGGCATACCC | + |
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Preference number: 5 (lower is better) Translates to: GNLVVSLECGASSML*RSLDCCWRILRGIP Trigger: GGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGCCCCACATTCCAGACTAACTACCAAGTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS GCA 90 bp | TGGGCAGTTCAGAATAGGTGGTGGTGCTGGCATCCACTGAGTGTTTaGAAGGACTATAGTCTGATTATTTTGAATAGGAAGCCGTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: WAVQNRWWCWHPLSV*KDYSLIILNRKPCS Trigger: GCTACACGGCTTCCTATTCAAAATAATCAGACTATAGTCCTTGCAAACACTCAGTGGATGCCAGCACCACCACCTATTCTGAACTGCCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CAA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTATGCTCTGGAGGTCCTaGGACTGCTGCTGGAGGATA | + |
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Preference number: 5 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLMLWRS*DCCWRI Trigger: TATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCAT...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CAA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTGAGTCACATAACCTATaGGCACCCCTGGAGGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLESHNL*APLEEP Trigger: AGGCTCCTCCAGGGGTGCCAATAGGTTATGTGACTC...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CAA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTCAGAGTCATGACTTCTaGGCCCAGATGATCCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLQSHDF*AQMIQD Trigger: ATCCTGGATCATCTGGGCCAAGAAGTCATGACTCTG...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS-3UTR CAA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTATAGTCTGATTATTTaGAATAGGAAGCCGTGTAGC | + |
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Preference number: 5 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLYSLII*NRKPCS Trigger: GCTACACGGCTTCCTATTCAAAATAATCAGACTATA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS-3UTR CAA 90 bp | AATTTCAATGAAGAAATCAAAAAGCCCCAGGTCTCTCAATCATATGATCTCCTTTGCCCGAGGCTGTTCTaGATTTCAAATTTGTTATTT | + |
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Preference number: 5 (lower is better) Translates to: NFNEEIKKPQVSQSYDLLCPRLF*ISNLLF Trigger: AAATAACAAATTTGAAATCAAGAACAGCCTCGGGCA...AAGGAGATCATATGATTGAGAGACCTGGGGCTTTTTGATTTCTTCATTGAAATT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS GCA 72 bp | GGGGCGTCCAGTATGCTCTGGAGGTCCTTGGACTGCTaGTGGAGGATACTGAGGGGCATACCCAGCTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: GASSMLWRSLDC*WRILRGIPSWQ Trigger: TTGCCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS GCA 72 bp | TGTGGGGCGTCCAGTATGCTCTGGAGGTCCTTGGACTaGTGCTGGAGGATACTGAGGGGCATACCCAGCTGG | + |
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Preference number: 6 (lower is better) Translates to: CGASSMLWRSLD*CWRILRGIPSW Trigger: CCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGCCCCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS CCA 72 bp | GCGTCCAGTATGCTCTGGAGGTCCTTGGACTGCTGCTaGAGGATACTGAGGGGCATACCCAGCTGGCAAGTA | + |
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Preference number: 6 (lower is better) Translates to: ASSMLWRSLDCC*RILRGIPSWQV Trigger: TACTTGCCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS CAA 90 bp | GTAGTTAGTCTGGAATGTGGGGCGTCCAGTATGCTCTGGAGGTCCTaGGACTGCTGCTGGAGGATACTGAGGGGCATACCCAGCTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: VVSLECGASSMLWRS*DCCWRILRGIPSWQ Trigger: TTGCCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCCAAGGACCTCCAGAGCATACTGGACGCCCCACATTCCAGACTAACTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS CAA 72 bp | GCTAGCCTGAGGTCCTGGATAACCAGACTGGGGAACTaGGTAGTTAGTCTGGAATGTGGGGCGTCCAGTATG | + |
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Preference number: 6 (lower is better) Translates to: ASLRSWITRLGN*VVSLECGASSM Trigger: CATACTGGACGCCCCACATTCCAGACTAACTACCAAGTTCCCCAGTCTGGTTATCCAGGACCTCAGGCTAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS TCA 72 bp | AAGCCGTGTAGCAGCATAACCTTCATGTCCAGATGTTaGGACTGTGTAGCTAGCCTGAGGTCCTGGATAACC | + |
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Preference number: 6 (lower is better) Translates to: KPCSSITFMSRC*DCVASLRSWIT Trigger: GGTTATCCAGGACCTCAGGCTAGCTACACAGTCTCAACATCTGGACATGAAGGTTATGCTGCTACACGGCTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS GCA 72 bp | CAGAATAGGTGGTGGTGCTGGCATCCACTGAGTGTTTaGAAGGACTATAGTCTGATTATTTTGAATAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: QNRWWCWHPLSV*KDYSLIILNRK Trigger: CTTCCTATTCAAAATAATCAGACTATAGTCCTTGCAAACACTCAGTGGATGCCAGCACCACCACCTATTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034932.14 ENSMUST00000180154.8 |
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| CDS CAA 90 bp | CACTGCTTGGTGATCTTACCAATTCTAGTCACTTCATCAAGAGACTaGATCTCAAAGTCAATATCTGAACAGCAGGTGCATGCAACACAT | + |
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Preference number: 6 (lower is better) Translates to: HCLVILPILVTSSRD*ISKSISEQQVHATH Trigger: ATGTGTTGCATGCACCTGCTGTTCAGATATTGACTTTGAGATCAAGTCTCTTGATGAAGTGACTAGAATTGGTAAGATCACCAAGCAGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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| CDS CAA 72 bp | GTGATCTTACCAATTCTAGTCACTTCATCAAGAGACTaGATCTCAAAGTCAATATCTGAACAGCAGGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: VILPILVTSSRD*ISKSISEQQVH Trigger: ATGCACCTGCTGTTCAGATATTGACTTTGAGATCAAGTCTCTTGATGAAGTGACTAGAATTGGTAAGATCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000034932.14 ENSMUST00000113044.3 ENSMUST00000180154.8 |
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