Pregenerated sensors for PLSCR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032369Ensembl transcript IDs: ENSMUST00000093801.10, ENSMUST00000186364.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAAGTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTaGTTCCTCAGTTTCCATTCAGGGTCCATAAAGTTGTCGTCCTTA | + |
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Preference number: 1 (lower is better) Translates to: ESYFSKGKEATVCAL*FLSFHSGSIKLSSL Trigger: TAAGGACGACAACTTTATGGACCCTGAATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAACTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| 3UTR CAA 90 bp | TGGGAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTaGATAGAAAGTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGT | + |
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Preference number: 2 (lower is better) Translates to: WEHNCTTGHPGITGE*IESYFSKGKEATVC Trigger: ACACACCGTGGCTTCTTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| 3UTR TCA 72 bp | TTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTaGTTCCTCAGTTTCCATTCAGGGTCCATAAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: FSKGKEATVCAL*FLSFHSGSIKL Trigger: CAACTTTATGGACCCTGAATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTACTAGGGCCACCACCTaGATAACCTCCTGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: EHNCTTGHPGITGELIESTRATT*ITSWWD Trigger: GTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGT...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTAGGTCCTTGGAAAGCTaGTGGTGGATACGGAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSIRSLES*WWIRRG Trigger: CCCCCTCCGTATCCACCAGCAGCTTTCCAAGGACCT...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAAACTAGGGCCACCACCTaGATAACCTCCTGGTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: GHPGITGELIESYFSKGKTRATT*ITSWWD Trigger: GTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGT...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTTGCATAACCTCCTGGTaGGACTGGGTAGCCAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSICITSW*DWVARL Trigger: CAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCA...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTGGATTTCTATCTCCTaGAGGCAGCAGGGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: EHNCTTGHPGITGELIESWISIS*RQQGKQ Trigger: CTGCTTCCCCTGCTGCCTCCAGGAGATAGAAATCCA...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAGAACTTGGGCAGACATaGGTGCCAGGTCTGAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: TGHPGITGELIESYFSKGELGQT*VPGLSH Trigger: GTGACTCAGACCTGGCACCCATGTCTGCCCAAGTTC...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAATGCATAACCTCCTGGTaGGACTGGGTAGCCAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: GHPGITGELIESYFSKGKCITSW*DWVARL Trigger: CAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCA...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTGAACTTGGGCAGACATaGGTGCCAGGTCTGAGTCAC | + |
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Preference number: 4 (lower is better) Translates to: VISVKEKKPRCVPCDSSVELGQT*VPGLSH Trigger: GTGACTCAGACCTGGCACCCATGTCTGCCCAAGTTC...AACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR TCA 90 bp | GTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTGTAAGCAGCATGGTCTaGAGGTCCTTGGAAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: VISVKEKKPRCVPCDSSVVSSMV*RSLESC Trigger: GCAGCTTTCCAAGGACCTTCAGACCATGCTGCTTAC...AACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR TCA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAAGTAAGCAGCATGGTCTaGAGGTCCTTGGAAAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: GHPGITGELIESYFSKGKVSSMV*RSLESC Trigger: GCAGCTTTCCAAGGACCTTCAGACCATGCTGCTTAC...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR TCA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAGTCTCTCCAGAGTCATaGCTTCTCGGCCCAGATTAT | + |
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Preference number: 4 (lower is better) Translates to: TGHPGITGELIESYFSKGVSPES*LLGPDY Trigger: ATAATCTGGGCCGAGAAGTCATGACTCTGGAGAGAC...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTTGGTCTGAAGGTCCTTaGAAAGCTGCTGGTGGATAC | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSIWSEGP*KAAGGY Trigger: GTATCCACCAGCAGCTTTCCAAGGACCTTCAGACCA...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTGGATTTCTATCTCCTaGAGGCAGCAGGGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VISVKEKKPRCVPCDSSVWISIS*RQQGKQ Trigger: CTGCTTCCCCTGCTGCCTCCAGGAGATAGAAATCCA...AACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTAGGTCTAGCGGGAACTaGATCCCAAAATTGTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: EHNCTTGHPGITGELIESRSSGN*IPKLSA Trigger: TGCAGACAATTTTGGGATCCAGTTCCCGCTAGACCT...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR TCA 90 bp | GTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTGTCTCTCCAGAGTCATaGCTTCTCGGCCCAGATTAT | + |
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Preference number: 4 (lower is better) Translates to: VISVKEKKPRCVPCDSSVVSPES*LLGPDY Trigger: ATAATCTGGGCCGAGAAGTCATGACTCTGGAGAGAC...AACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTCATGCTCCTGATCTTTaGTCCTCGTTTCCAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: EHNCTTGHPGITGELIESHAPDL*SSFPVL Trigger: AAGAACTGGAAACGAGGAGCAAAGATCAGGAGCATG...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTGGTCTGAAGGTCCTTaGAAAGCTGCTGGTGGATAC | + |
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Preference number: 4 (lower is better) Translates to: VISVKEKKPRCVPCDSSVWSEGP*KAAGGY Trigger: GTATCCACCAGCAGCTTTCCAAGGACCTTCAGACCA...AACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAGGTCTAGCGGGAACTaGATCCCAAAATTGTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: TGHPGITGELIESYFSKGRSSGN*IPKLSA Trigger: TGCAGACAATTTTGGGATCCAGTTCCCGCTAGACCT...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTACCTGGATGATTATATaGTGGCTGATTTTGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: EHNCTTGHPGITGELIESTWMII*WLILDR Trigger: CCTGTCCAAAATCAGCCAGCATATAATCATCCAGGT...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTACCTGGATGATTATATaGTGGCTGATTTTGGACAGG | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSITWMII*WLILDR Trigger: CCTGTCCAAAATCAGCCAGCATATAATCATCCAGGT...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAACATGCTCCTGATCTTTaGTCCTCGTTTCCAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GHPGITGELIESYFSKGKHAPDL*SSFPVL Trigger: AAGAACTGGAAACGAGGAGCAAAGATCAGGAGCATG...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTTGCTTCTTCTCATTTTaGAGAGTGAACTTGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSICFFSF*RVNLGR Trigger: TCTGCCCAAGTTCACTCTCCAAAATGAGAAGAAGCA...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR TCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTGCCCGAGGCTGTTCTTaGTTTCATATTTGTTATTTG | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSIARGCS*FHICYL Trigger: CAAATAACAAATATGAAATCAAGAACAGCCTCGGGC...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTACTTTCAGGACATCCTaGTTCTTCTCATTTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SVKEKKPRCVPCDSSVSITFRTS*FFSFWR Trigger: TCTCCAAAATGAGAAGAAGCAGGATGTCCTGAAAGT...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR GCA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAACTTTCAGGACATCCTaGTTCTTCTCATTTTGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TGHPGITGELIESYFSKGTFRTS*FFSFWR Trigger: TCTCCAAAATGAGAAGAAGCAGGATGTCCTGAAAGT...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAATGCTTCTTCTCATTTTaGAGAGTGAACTTGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GHPGITGELIESYFSKGKCFFSF*RVNLGR Trigger: TCTGCCCAAGTTCACTCTCCAAAATGAGAAGAAGCA...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| 3UTR CAA 72 bp | AATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTaGATAGAAAGTTATTTCAGTAAAGGAAAAGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: NCTTGHPGITGE*IESYFSKGKEA Trigger: GGCTTCTTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CCA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAATGGATGATTATATGCTaGCTGATTTTGGACAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: GHPGITGELIESYFSKGKWMIIC*LILDRK Trigger: TTTCCTGTCCAAAATCAGCCAGCATATAATCATCCA...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS CCA 90 bp | AGGAAAGCCACTAGGGCCACCACCTGCATAACCTCCTGGTGGGACTaGGTAGCCAGGTTGGGGCCCTGGATAGGGGCCCGGAGGCCCTTG | + |
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Preference number: 5 (lower is better) Translates to: RKATRATTCITSWWD*VARLGPWIGARRPL Trigger: CAAGGGCCTCCGGGCCCCTATCCAGGGCCCCAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGTGGCTTTCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS CCA 90 bp | TTGGACAGGAAAGCCACTAGGGCCACCACCTGCATAACCTCCTGGTaGGACTGGGTAGCCAGGTTGGGGCCCTGGATAGGGGCCCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LDRKATRATTCITSW*DWVARLGPWIGARR Trigger: CCTCCGGGCCCCTATCCAGGGCCCCAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGTGGCTTTCCTGTCCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS GCA 90 bp | ATATGCTGGCTGATTTTGGACAGGAAAGCCACTAGGGCCACCACCTaGATAACCTCCTGGTGGGACTGGGTAGCCAGGTTGGGGCCCTGG | + |
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Preference number: 5 (lower is better) Translates to: ICWLILDRKATRATT*ITSWWDWVARLGPW Trigger: CCAGGGCCCCAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGTGGCTTTCCTGTCCAAAATCAGCCAGCATAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTGACTGGGTAGCCAGGTaGGGGCCCTGGATAGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: EHNCTTGHPGITGELIESDWVAR*GPWIGA Trigger: GGCCCCTATCCAGGGCCCCAACCTGGCTACCCAGTC...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAAGACTGGGTAGCCAGGTaGGGGCCCTGGATAGGGGCC | + |
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Preference number: 5 (lower is better) Translates to: GHPGITGELIESYFSKGKDWVAR*GPWIGA Trigger: GGCCCCTATCCAGGGCCCCAACCTGGCTACCCAGTC...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAGTGGGGAGCCTCAGTTaGCTTGCTGTGGTTTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: TGHPGITGELIESYFSKGVGSLS*LAVVFH Trigger: ATGGAAAACCACAGCAAGCAAACTGAGGCTCCCCAC...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAAGTGGGGAGCCTCAGTTaGCTTGCTGTGGTTTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: GHPGITGELIESYFSKGKVGSLS*LAVVFH Trigger: ATGGAAAACCACAGCAAGCAAACTGAGGCTCCCCAC...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTATATGCTGGCTGATTTaGGACAGGAAAGCCACTAGG | + |
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Preference number: 5 (lower is better) Translates to: EHNCTTGHPGITGELIESICWLI*DRKATR Trigger: CCTAGTGGCTTTCCTGTCCAAAATCAGCCAGCATAT...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAATTTTGGAGAGTGAACTaGGGCAGACATGGGTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: GHPGITGELIESYFSKGKFWRVN*GRHGCQ Trigger: CTGGCACCCATGTCTGCCCAAGTTCACTCTCCAAAA...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GTTATTTCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTTTTGGAGAGTGAACTaGGGCAGACATGGGTGCCAG | + |
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Preference number: 5 (lower is better) Translates to: VISVKEKKPRCVPCDSSVFWRVN*GRHGCQ Trigger: CTGGCACCCATGTCTGCCCAAGTTCACTCTCCAAAA...AACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGAAATAAC 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAACTGGATCCCAAAATaGTCTGCATCCGTGAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: TGHPGITGELIESYFSKGNWIPK*SASVKA Trigger: GGCCTTCACGGATGCAGACAATTTTGGGATCCAGTT...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GAGCATAATTGTACAACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTTCCAGAAGCTCAATTaGCTGATGAACCAGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: EHNCTTGHPGITGELIESFQKLN*LMNQKL Trigger: CAGCTTCTGGTTCATCAGCAAATTGAGCTTCTGGAA...ACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGTTGTACAATTATGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTCTGCTTCTTCTCATTTaGGAGAGTGAACTTGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SVKEKKPRCVPCDSSVSILLLLI*ESELGQ Trigger: CTGCCCAAGTTCACTCTCCAAAATGAGAAGAAGCAG...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | ACAGGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGACTGCTTCTTCTCATTTaGGAGAGTGAACTTGGGCAG | + |
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Preference number: 5 (lower is better) Translates to: TGHPGITGELIESYFSKGLLLLI*ESELGQ Trigger: CTGCCCAAGTTCACTCTCCAAAATGAGAAGAAGCAG...TCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAATTCCAGAAGCTCAATTaGCTGATGAACCAGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GHPGITGELIESYFSKGKFQKLN*LMNQKL Trigger: CAGCTTCTGGTTCATCAGCAAATTGAGCTTCTGGAA...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS GCA 90 bp | AAATTGTCTGCATCCGTGAAGGCCTCTCTCACAAAACCAGACCACTaGTTAGAAATTTTGCCAACTACTGATTCTTCATCTAGAGATTTG | + |
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Preference number: 5 (lower is better) Translates to: KLSASVKASLTKPDH*LEILPTTDSSSRDL Trigger: CAAATCTCTAGATGAAGAATCAGTAGTTGGCAAAATTTCTAAGCAGTGGTCTGGTTTTGTGAGAGAGGCCTTCACGGATGCAGACAATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | TCAGTAAAGGAAAAGAAGCCACGGTGTGTGCCTTGTGATTCCTCAGTTTCCATTCACTGCTTAGAAATTTaGCCAACTACTGATTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SVKEKKPRCVPCDSSVSIHCLEI*PTTDSS Trigger: TGAAGAATCAGTAGTTGGCAAAATTTCTAAGCAGTG...AATGGAAACTGAGGAATCACAAGGCACACACCGTGGCTTCTTTTCCTTTACTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS-3UTR CAA 90 bp | GGGCACCCAGGCATCACAGGTGAGTTGATAGAAAGTTATTTCAGTAAAGGAAAACACTGCTTAGAAATTTaGCCAACTACTGATTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GHPGITGELIESYFSKGKHCLEI*PTTDSS Trigger: TGAAGAATCAGTAGTTGGCAAAATTTCTAAGCAGTG...TTTTCCTTTACTGAAATAACTTTCTATCAACTCACCTGTGATGCCTGGGTGCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS CCA 72 bp | ACTAGGGCCACCACCTGCATAACCTCCTGGTGGGACTaGGTAGCCAGGTTGGGGCCCTGGATAGGGGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: TRATTCITSWWD*VARLGPWIGAR Trigger: CCGGGCCCCTATCCAGGGCCCCAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS CCA 72 bp | AAAGCCACTAGGGCCACCACCTGCATAACCTCCTGGTaGGACTGGGTAGCCAGGTTGGGGCCCTGGATAGGG | + |
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Preference number: 6 (lower is better) Translates to: KATRATTCITSW*DWVARLGPWIG Trigger: CCCTATCCAGGGCCCCAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGTGGCTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS GCA 72 bp | CTGATTTTGGACAGGAAAGCCACTAGGGCCACCACCTaGATAACCTCCTGGTGGGACTGGGTAGCCAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: LILDRKATRATT*ITSWWDWVARL Trigger: CAACCTGGCTACCCAGTCCCACCAGGAGGTTATGCAGGTGGTGGCCCTAGTGGCTTTCCTGTCCAAAATCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS GCA 72 bp | GCATCCGTGAAGGCCTCTCTCACAAAACCAGACCACTaGTTAGAAATTTTGCCAACTACTGATTCTTCATCT | + |
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Preference number: 6 (lower is better) Translates to: ASVKASLTKPDH*LEILPTTDSSS Trigger: AGATGAAGAATCAGTAGTTGGCAAAATTTCTAAGCAGTGGTCTGGTTTTGTGAGAGAGGCCTTCACGGATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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| CDS TCA 72 bp | AAATTTTGCCAACTACTGATTCTTCATCTAGAGATTTaGGCTCAAAGTCAATGTCGGAACAGCAGCTACACA | + |
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Preference number: 6 (lower is better) Translates to: KFCQLLILHLEI*AQSQCRNSSYT Trigger: TGTGTAGCTGCTGTTCCGACATTGACTTTGAGCTCAAATCTCTAGATGAAGAATCAGTAGTTGGCAAAATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093801.10 ENSMUST00000186364.2 |
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