Pregenerated sensors for PLS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049493Ensembl transcript IDs: ENSMUST00000093800.9, ENSMUST00000119760.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTaGCAGCACTTTCCTTGCATAGCACTATTGCTCACTGGCACTAAA | + |
|
Preference number: 1 (lower is better) Translates to: QWTRRRRTTHSHGER*QHFPCIALLLTGTK Trigger: TTTAGTGCCAGTGAGCAATAGTGCTATGCAAGGAAAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCACTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR GCA 90 bp | TTAGAGAAATACATATGTGTAACATCCTACCAACATATAGTATTATaGTTGATGGTGGAGACAAAGCTGTGTTATCAGACTAGCACATGT | + |
|
Preference number: 1 (lower is better) Translates to: LEKYICVTSYQHIVL*LMVETKLCYQTSTC Trigger: ACATGTGCTAGTCTGATAACACAGCTTTGTCTCCACCATCAAGCATAATACTATATGTTGGTAGGATGTTACACATATGTATTTCTCTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR-3UTR CCA 90 bp | GTAAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGTTGGTGCGTACAGTGTaGCAGATCACAGTAAACGCT | + |
|
Preference number: 2 (lower is better) Translates to: VKISYSLNKRVNVGVIQELVRTV*QITVNA Trigger: AGCGTTTACTGTGATCTGCCACACTGTACGCACCAA...CTCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTTAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR-3UTR GCA 90 bp | CTAAACACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGACAACATATAGTATTATaGTTGATGGTGGAGACAAAG | + |
|
Preference number: 2 (lower is better) Translates to: LNTQTLSLLLYVLISGQGQHIVL*LMVETK Trigger: CTTTGTCTCCACCATCAAGCATAATACTATATGTTG...TCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTGTTTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR-3UTR TCA 90 bp | AAGGTGGGTAACTCAGATGACTTAGAGAAATACATATGTGTAACATCCTACCAACAAAATTCTGTAAACTaGGACGTTTGGTGCGTACAG | + |
|
Preference number: 2 (lower is better) Translates to: KVGNSDDLEKYICVTSYQQNSVN*DVWCVQ Trigger: CTGTACGCACCAAACGTCTCAGTTTACAGAATTTTG...TTGGTAGGATGTTACACATATGTATTTCTCTAAGTCATCTGAGTTACCCACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR-3UTR TCA 90 bp | CATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCTACAGAAGCCAGATTATCCACAATTaGAAAGTGTCACACACATTG | + |
|
Preference number: 2 (lower is better) Translates to: HEKLRRTLAFIYTDLYRSQIIHN*KVSHTL Trigger: CAATGTGTGTGACACTTTTCAATTGTGGATAATCTG...GCTTCTGTAGAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR CCA 72 bp | ACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTaGACAAGGAGGAGGCGGACAACCCATTCACACGGA | + |
|
Preference number: 3 (lower is better) Translates to: TDTLPPAVCSDQ*TRRRRTTHSHG Trigger: TCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR TCA 72 bp | AGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTaGCAGCACTTTCCTTGCATAGCACTATTGCTCACT | + |
|
Preference number: 3 (lower is better) Translates to: RRRRTTHSHGER*QHFPCIALLLT Trigger: AGTGAGCAATAGTGCTATGCAAGGAAAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR-3UTR CAA 90 bp | GTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACTTGGATACAGAACTATTTaGAGCATACAGATATTCGGA | + |
|
Preference number: 3 (lower is better) Translates to: VDKEEADNPFTRREVTALGYRTI*SIQIFG Trigger: TCCGAATATCTGTATGCTCAAAATAGTTCTGTATCC...AAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR-3UTR CAA 90 bp | CACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGGAGGCATATAGTATTATGCTaGATGGTGGAGACAAAGCTG | + |
|
Preference number: 3 (lower is better) Translates to: HTDTLPPAVCSDQWTRRRHIVLC*MVETKL Trigger: CAGCTTTGTCTCCACCATCAAGCATAATACTATATG...CCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | TCAGTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCATGCGCCAGCCCGCATTaGTCAGATGGTAGTTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: SVDKEEADNPFTRREVTACASPH*SDGSSP Trigger: GGGTGAACTACCATCTGACCAATGCGGGCTGGCGCA...TGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCACTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | TCAGTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCAGAGGCTTTCCTTCCTTaGGGTCCTGAGCACCAATGT | + |
|
Preference number: 4 (lower is better) Translates to: SVDKEEADNPFTRREVTAEAFLP*GPEHQC Trigger: ACATTGGTGCTCAGGACCTCAAGGAAGGAAAGCCTC...TGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCACTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | GTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACTTCCTTCATTTAAGTCCTaGCCGGCGATGCCAACCAAA | + |
|
Preference number: 4 (lower is better) Translates to: VDKEEADNPFTRREVTALPSFKS*PAMPTK Trigger: TTTGGTTGGCATCGCCGGGCAGGACTTAAATGAAGG...AAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | CTAAACACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAAGTCCTGCCCGGCGATaGCAACCAAAGAGAACTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LNTQTLSLLLYVLISGQGSPARR*QPKRTW Trigger: CCAAGTTCTCTTTGGTTGGCATCGCCGGGCAGGACT...TCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTGTTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | GTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACTTTTTCTCATTAAATCCTaGAAGATCAATGGCTACGGC | + |
|
Preference number: 4 (lower is better) Translates to: VDKEEADNPFTRREVTALFLIKS*KINGYG Trigger: GCCGTAGCCATTGATCTTTCAGGATTTAATGAGAAA...AAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | TCAGTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACGCCTTCCAGTAAGTTaGGATCAATGTCATTATTGT | + |
|
Preference number: 4 (lower is better) Translates to: SVDKEEADNPFTRREVTARLPVS*DQCHYC Trigger: ACAATAATGACATTGATCTCAACTTACTGGAAGGCG...TGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCCCACGGTGCAACCGATaGCCGAGGCAGAGTTCAGTG | + |
|
Preference number: 4 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLPRCNR*PRQSSV Trigger: CACTGAACTCTGCCTCGGCCATCGGTTGCACCGTGG...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | CTAAACACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGATTCATGGGTAGGAGGTaGCTACAGTCTGCATCATTC | + |
|
Preference number: 4 (lower is better) Translates to: LNTQTLSLLLYVLISGQGFMGRR*LQSASF Trigger: GAATGATGCAGACTGTAGCCACCTCCTACCCATGAA...TCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTGTTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | AAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGTTTCACCTGGCTCCAGTTaGCTGGCACGCGGATCATCT | + |
|
Preference number: 4 (lower is better) Translates to: KNLLQLKQESERGGYSRVSPGSS*LARGSS Trigger: AGATGATCCGCGTGCCAGTCAACTGGAGCCAGGTGA...AACTCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | CTAAACACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGACTCTTGATCATTTCTTaGCGGACTGCATTTGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: LNTQTLSLLLYVLISGQGLLIIS*RTAFGA Trigger: TGCACCAAATGCAGTCCGTCAAGAAATGATCAAGAG...TCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTGTTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCCTGGCTCCAGTTGACTaGCACGCGGATCATCTCGTA | + |
|
Preference number: 4 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLLAPVD*HADHLV Trigger: TACGAGATGATCCGCGTGCCAGTCAACTGGAGCCAG...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | AAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGTTAGCCCCAAGACCAAGTaGGGCTTTCCTTCCTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KNLLQLKQESERGGYSRVSPKTK*GFPSLR Trigger: CCTCAAGGAAGGAAAGCCTCACTTGGTCTTGGGGCT...AACTCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCCCCACTTTGATGATCTaGCAGAGAAGCCCCAAGACC | + |
|
Preference number: 4 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLPTLMI*QRSPKT Trigger: GGTCTTGGGGCTTCTCTGGCAGATCATCAAAGTGGG...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | CATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCTACAGAAGCCCTTCCTTGAGGTCCTaGGCACCAATGTTGACCACG | + |
|
Preference number: 4 (lower is better) Translates to: HEKLRRTLAFIYTDLYRSPSLRS*APMLTT Trigger: CGTGGTCAACATTGGTGCTCAGGACCTCAAGGAAGG...GCTTCTGTAGAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | AAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGTTCAACTGCCACACCAGTaGCAGGGTAAGTGTTGCGTT | + |
|
Preference number: 4 (lower is better) Translates to: KNLLQLKQESERGGYSRVQLPHQ*QGKCCV Trigger: AACGCAACACTTACCCTGGCACTGGTGTGGCAGTTG...AACTCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | AGTAAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGCTCCTCCCGAGAAATaGTGGTGGTACTGTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SKNLLQLKQESERGGYSRAPPEK*WWYCFP Trigger: TGGAAAACAGTACCACCACCATTTCTCGGGAGGAGC...TCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCGAATCCTTGATGTCCTaGCTGAAGTTGTTGATGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLESLMS*LKLLMV Trigger: CACCATCAACAACTTCAGCCAGGACATCAAGGATTC...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | AAAACAGATCTCCACAGATCAGATTATCCACAATTGAAAAGTGTCACACACATTGAGAAGGATGCCATCTaGCAGCGACTTGAAAAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KTDLHRSDYPQLKSVTHIEKDAI*QRLEKA Trigger: AGCCTTTTCAAGTCGCTGGCAGATGGCATCCTTCTC...AATGTGTGTGACACTTTTCAATTGTGGATAATCTGATCTGTGGAGATCTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | AAAACAGATCTCCACAGATCAGATTATCCACAATTGAAAAGTGTCACACACATTATGTCCTCTCCTCCTTaGTCTCGCCTTCCAGTAAGT | + |
|
Preference number: 4 (lower is better) Translates to: KTDLHRSDYPQLKSVTHIMSSPP*SRLPVS Trigger: ACTTACTGGAAGGCGAGAGCAAGGAGGAGAGGACAT...AATGTGTGTGACACTTTTCAATTGTGGATAATCTGATCTGTGGAGATCTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | AGTAAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGATCTTCCGAGCAACTaGAATGGCGTATTTAGCATT | + |
|
Preference number: 4 (lower is better) Translates to: SKNLLQLKQESERGGYSRDLPSN*NGVFSI Trigger: AATGCTAAATACGCCATTTCAGTTGCTCGGAAGATC...TCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTTACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCAGAAGTGCTCTTGTTTaGACTTTTAAGGGTCTGGTT | + |
|
Preference number: 4 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLRSALV*TFKGLV Trigger: AACCAGACCCTTAAAAGTGCAAACAAGAGCACTTCT...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR TCA 90 bp | AAAACAGATCTCCACAGATCAGATTATCCACAATTGAAAAGTGTCACACACATTTCAAGTGCTCTCTCTTaGTCATTTCTTGACGGACTG | + |
|
Preference number: 4 (lower is better) Translates to: KTDLHRSDYPQLKSVTHISSALS*SFLDGL Trigger: CAGTCCGTCAAGAAATGATCAAGAGAGAGCACTTGA...AATGTGTGTGACACTTTTCAATTGTGGATAATCTGATCTGTGGAGATCTGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCCTGCATTTGGTGCAATaGCATCTATTAGATCTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLLHLVQ*HLLDLR Trigger: TCTTAGATCTAATAGATGCCATTGCACCAAATGCAG...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR GCA 90 bp | AAGGTGGGTAACTCAGATGACTTAGAGAAATACATATGTGTAACATCCTACCAATCCTCATCAGTCAAGTaGTCTCTCTTGATCATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KVGNSDDLEKYICVTSYQSSSVK*SLLIIS Trigger: AGAAATGATCAAGAGAGAGCACTTGACTGATGAGGA...TTGGTAGGATGTTACACATATGTATTTCTCTAAGTCATCTGAGTTACCCACCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | CATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCTACAGAAGCTCAAGGCTTCATTCCTaGAAATCTCGATATCAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: HEKLRRTLAFIYTDLYRSSRLHS*KSRYQQ Trigger: TTGCTGATATCGAGATTTCCAGGAATGAAGCCTTGA...GCTTCTGTAGAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CCA 90 bp | AAAACAGATCTCCACAGATCAGATTATCCACAATTGAAAAGTGTCACACACATTGCACTTTTAAGGGTCTaGTTGACCCATTTAATAATG | + |
|
Preference number: 4 (lower is better) Translates to: KTDLHRSDYPQLKSVTHIALLRV*LTHLIM Trigger: CATTATTAAATGGGTCAACCAGACCCTTAAAAGTGC...AATGTGTGTGACACTTTTCAATTGTGGATAATCTGATCTGTGGAGATCTGTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| 3UTR CAA 72 bp | GACAAGATATTCTTCATTGCTGGATACAGAACTATTTaGAGCATACAGATATTCGGATTTTATACCCACTAC | + |
|
Preference number: 4 (lower is better) Translates to: DKIFFIAGYRTI*SIQIFGFYTHY Trigger: GTAGTGGGTATAAAATCCGAATATCTGTATGCTCAAAATAGTTCTGTATCCAGCAATGAAGAATATCTTGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | GTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACTTCCATCTGCCAGCGACTaGAAAAGGCTGCCGTCGTTG | + |
|
Preference number: 5 (lower is better) Translates to: VDKEEADNPFTRREVTALPSASD*KRLPSL Trigger: CAACGACGGCAGCCTTTTCAAGTCGCTGGCAGATGG...AAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGGAGGTCCTGGCTGAAGTTGTaGATGGTGCGCCAGCCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: HTDTLPPAVCSDQWTRRRSWLKL*MVRQPA Trigger: TGCGGGCTGGCGCACCATCAACAACTTCAGCCAGGA...CCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | GTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACTTAATGTCCTCTCCTCCTaGCTCTCGCCTTCCAGTAAG | + |
|
Preference number: 5 (lower is better) Translates to: VDKEEADNPFTRREVTALNVLSS*LSPSSK Trigger: CTTACTGGAAGGCGAGAGCAAGGAGGAGAGGACATT...AAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGGAGGAGCGAGTTCATCCAGTaGCGGAATGTCCTCTCCTCC | + |
|
Preference number: 5 (lower is better) Translates to: HTDTLPPAVCSDQWTRRRSEFIQ*RNVLSS Trigger: GGAGGAGAGGACATTCCGCAACTGGATGAACTCGCT...CCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | GTGGACAAGGAGGAGGCGGACAACCCATTCACACGGAGAGAGGTGACAGCACTTTCTCTTGATCATTTCTaGACGGACTGCATTTGGTGC | + |
|
Preference number: 5 (lower is better) Translates to: VDKEEADNPFTRREVTALSLDHF*TDCIWC Trigger: GCACCAAATGCAGTCCGTCAAGAAATGATCAAGAGA...AAGTGCTGTCACCTCTCTCCGTGTGAATGGGTTGTCCGCCTCCTCCTTGTCCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS TCA 90 bp | GAGCATAAATCCAGCACGCTTCAGGTCGTTTTTCTCATTAAATCCTaGAAGATCAATGGCTACGGCAGGCCCATCATCTCGGTCGCCTTT | + |
|
Preference number: 5 (lower is better) Translates to: EHKSSTLQVVFLIKS*KINGYGRPIISVAF Trigger: AAAGGCGACCGAGATGATGGGCCTGCCGTAGCCATTGATCTTTCAGGATTTAATGAGAAAAACGACCTGAAGCGTGCTGGATTTATGCTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CCAGGAGACCATGAAAAACTACGACGGACATTAGCTTTTATATACACAGATCTCACAATCTCGCGCACCTaGTACCCAGGAAGGGGAAGG | + |
|
Preference number: 5 (lower is better) Translates to: PGDHEKLRRTLAFIYTDLTISRT*YPGRGR Trigger: CCTTCCCCTTCCTGGGTACAAGGTGCGCGAGATTGT...GAGATCTGTGTATATAAAAGCTAATGTCCGTCGTAGTTTTTCATGGTCTCCTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGGAGGAGATCAATGTCATTATaGTCAGGCTTGTGTAGGCAT | + |
|
Preference number: 5 (lower is better) Translates to: HTDTLPPAVCSDQWTRRRRSMSL*SGLCRH Trigger: ATGCCTACACAAGCCTGACAATAATGACATTGATCT...CCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGGAGGATGGCGTATTTAGCATaGTTCAGTTTGTCCTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: HTDTLPPAVCSDQWTRRRMAYLA*FSLSSS Trigger: TGATGAGGACAAACTGAACAATGCTAAATACGCCAT...CCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGGAGGGTTTTGCTGATATCTTaGCTTTTTAGCTCTTGCATC | + |
|
Preference number: 5 (lower is better) Translates to: HTDTLPPAVCSDQWTRRRVLLIS*LFSSCI Trigger: GATGCAAGAGCTAAAAAGCAAAGATATCAGCAAAAC...CCTCCTCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | AAGGTGGGTAACTCAGATGACTTAGAGAAATACATATGTGTAACATCCTACCAATTCACCTGGCTCCAGTaGACTGGCACGCGGATCATC | + |
|
Preference number: 5 (lower is better) Translates to: KVGNSDDLEKYICVTSYQFTWLQ*TGTRII Trigger: GATGATCCGCGTGCCAGTCAACTGGAGCCAGGTGAA...TTGGTAGGATGTTACACATATGTATTTCTCTAAGTCATCTGAGTTACCCACCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | CTAAACACACAGACACTCTCCCTCCTGCTGTATGTTCTGATCAGTGGACAAGGAGATAAGTTGATCATTTaGCAGAGAAGGATGCCATCT | + |
|
Preference number: 5 (lower is better) Translates to: LNTQTLSLLLYVLISGQGDKLII*QRRMPS Trigger: AGATGGCATCCTTCTCTGCAAAATGATCAACTTATC...TCCTTGTCCACTGATCAGAACATACAGCAGGAGGGAGAGTGTCTGTGTGTTTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | AAAACAGATCTCCACAGATCAGATTATCCACAATTGAAAAGTGTCACACACATTATGTCCTGGCTGAAGTaGTTGATGGTGCGCCAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: KTDLHRSDYPQLKSVTHIMSWLK*LMVRQP Trigger: GGGCTGGCGCACCATCAACAACTTCAGCCAGGACAT...AATGTGTGTGACACTTTTCAATTGTGGATAATCTGATCTGTGGAGATCTGTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS TCA 90 bp | TTCAGTTTGTCCTCATCAGTCAAGTGCTCTCTCTTGATCATTTCTTaGCGGACTGCATTTGGTGCAATGGCATCTATTAGATCTAAGACA | + |
|
Preference number: 5 (lower is better) Translates to: FSLSSSVKCSLLIIS*RTAFGAMASIRSKT Trigger: TGTCTTAGATCTAATAGATGCCATTGCACCAAATGCAGTCCGTCAAGAAATGATCAAGAGAGAGCACTTGACTGATGAGGACAAACTGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | GTAAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGTCGCCTTCCAGTAAGTaGAGATCAATGTCATTATTG | + |
|
Preference number: 5 (lower is better) Translates to: VKISYSLNKRVNVGVIQESPSSK*RSMSLL Trigger: CAATAATGACATTGATCTCAACTTACTGGAAGGCGA...CTCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | AAGGTGGGTAACTCAGATGACTTAGAGAAATACATATGTGTAACATCCTACCAACTTGACGGACTGCATTaGGTGCAATGGCATCTATTA | + |
|
Preference number: 5 (lower is better) Translates to: KVGNSDDLEKYICVTSYQLDGLH*VQWHLL Trigger: TAATAGATGCCATTGCACCAAATGCAGTCCGTCAAG...TTGGTAGGATGTTACACATATGTATTTCTCTAAGTCATCTGAGTTACCCACCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | AAAAATCTCCTACAGCTTAAACAAGAGAGTGAACGTGGGGGTTATTCAAGAGTTGAAATAGAAGTGCTCTaGTTTGCACTTTTAAGGGTC | + |
|
Preference number: 5 (lower is better) Translates to: KNLLQLKQESERGGYSRVEIEVL*FALLRV Trigger: GACCCTTAAAAGTGCAAACAAGAGCACTTCTATTTC...AACTCTTGAATAACCCCCACGTTCACTCTCTTGTTTAAGCTGTAGGAGATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS-3UTR CAA 90 bp | AAAACAGATCTCCACAGATCAGATTATCCACAATTGAAAAGTGTCACACACATTTTAGCATTGTTCAGTTaGTCCTCATCAGTCAAGTGC | + |
|
Preference number: 5 (lower is better) Translates to: KTDLHRSDYPQLKSVTHILALFS*SSSVKC Trigger: GCACTTGACTGATGAGGACAAACTGAACAATGCTAA...AATGTGTGTGACACTTTTCAATTGTGGATAATCTGATCTGTGGAGATCTGTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS TCA 72 bp | TCACCAAAGCGTCTGCAAGGTCACTGTACAGGTGATTaGTGTACGGGTTCACGCCCAGCGAGTTCATCCAGT | + |
|
Preference number: 6 (lower is better) Translates to: SPKRLQGHCTGD*CTGSRPASSSS Trigger: ACTGGATGAACTCGCTGGGCGTGAACCCGTACATCAATCACCTGTACAGTGACCTTGCAGACGCTTTGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS TCA 72 bp | AAGATCACCAAAGCGTCTGCAAGGTCACTGTACAGGTaGTTGATGTACGGGTTCACGCCCAGCGAGTTCATC | + |
|
Preference number: 6 (lower is better) Translates to: KITKASARSLYR*LMYGFTPSEFI Trigger: GATGAACTCGCTGGGCGTGAACCCGTACATCAATCACCTGTACAGTGACCTTGCAGACGCTTTGGTGATCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS CCA 72 bp | AAAAGGCTGCCGTCGTTGGGGTTCATGGGTAGGAGGTaGCTACAGTCTGCATCATTCTCCAGAGCTTTGTTT | + |
|
Preference number: 6 (lower is better) Translates to: KRLPSLGFMGRR*LQSASFSRALF Trigger: AAACAAAGCTCTGGAGAATGATGCAGACTGTAGCCACCTCCTACCCATGAACCCCAACGACGGCAGCCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS TCA 72 bp | TGGCTCTCTCGTCAATCGTATCTGGCTCGGATAAGTTaGTCATTTTGCAGAGAAGGATGCCATCTGCCAGCG | + |
|
Preference number: 6 (lower is better) Translates to: WLSRQSYLARIS*SFCREGCHLPA Trigger: CGCTGGCAGATGGCATCCTTCTCTGCAAAATGATCAACTTATCCGAGCCAGATACGATTGACGAGAGAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS TCA 72 bp | TCCAGCACGCTTCAGGTCGTTTTTCTCATTAAATCCTaGAAGATCAATGGCTACGGCAGGCCCATCATCTCG | + |
|
Preference number: 6 (lower is better) Translates to: SSTLQVVFLIKS*KINGYGRPIIS Trigger: CGAGATGATGGGCCTGCCGTAGCCATTGATCTTTCAGGATTTAATGAGAAAAACGACCTGAAGCGTGCTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS GCA 72 bp | TCTGATAACACTTTCAGCGTGTATCTTCTCATCAACTaGCACACCAGTGCCAGGGTAAGTGTTGCGTTCCCT | + |
|
Preference number: 6 (lower is better) Translates to: SDNTFSVYLLIN*HTSARVSVAFP Trigger: AGGGAACGCAACACTTACCCTGGCACTGGTGTGGCAGTTGATGAGAAGATACACGCTGAAAGTGTTATCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS CAA 90 bp | AGGTTCAGATTTTCCGACACCGTGAACGGAGTGAGCTTCTTCTTATaGATGGCTCTCTCGTCAATCGTATCTGGCTCGGATAAGTTGATC | + |
|
Preference number: 6 (lower is better) Translates to: RFRFSDTVNGVSFFL*MALSSIVSGSDKLI Trigger: GATCAACTTATCCGAGCCAGATACGATTGACGAGAGAGCCATCAATAAGAAGAAGCTCACTCCGTTCACGGTGTCGGAAAATCTGAACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS CAA 72 bp | GCAACTACTAATATTTTCTCCACAATCTCGCGCACCTaGTACCCAGGAAGGGGAAGGCTTGCCTCCTTAAAT | + |
|
Preference number: 6 (lower is better) Translates to: ATTNIFSTISRT*YPGRGRLASLN Trigger: ATTTAAGGAGGCAAGCCTTCCCCTTCCTGGGTACAAGGTGCGCGAGATTGTGGAGAAAATATTAGTAGTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093800.9 ENSMUST00000119760.2 |
||
| CDS TCA 72 bp | TCCTCATCAGTCAAGTGCTCTCTCTTGATCATTTCTTaGCGGACTGCATTTGGTGCAATGGCATCTATTAGA | + |
|
Preference number: 6 (lower is better) Translates to: SSSVKCSLLIIS*RTAFGAMASIR Trigger: TCTAATAGATGCCATTGCACCAAATGCAGTCCGTCAAGAAATGATCAAGAGAGAGCACTTGACTGATGAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS CAA 72 bp | CGAGCAACTGAAATGGCGTATTTAGCATTGTTCAGTTaGTCCTCATCAGTCAAGTGCTCTCTCTTGATCATT | + |
|
Preference number: 6 (lower is better) Translates to: RATEMAYLALFS*SSSVKCSLLII Trigger: AATGATCAAGAGAGAGCACTTGACTGATGAGGACAAACTGAACAATGCTAAATACGCCATTTCAGTTGCTCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS CCA 72 bp | GAAATAGAAGTGCTCTTGTTTGCACTTTTAAGGGTCTaGTTGACCCATTTAATAATGATATCATCAGTGACT | + |
|
Preference number: 6 (lower is better) Translates to: EIEVLLFALLRV*LTHLIMISSVT Trigger: AGTCACTGATGATATCATTATTAAATGGGTCAACCAGACCCTTAAAAGTGCAAACAAGAGCACTTCTATTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||
| CDS CAA 72 bp | ATAGAAGTGCTCTTGTTTGCACTTTTAAGGGTCTGGTaGACCCATTTAATAATGATATCATCAGTGACTTTT | + |
|
Preference number: 6 (lower is better) Translates to: IEVLLFALLRVW*THLIMISSVTF Trigger: AAAAGTCACTGATGATATCATTATTAAATGGGTCAACCAGACCCTTAAAAGTGCAAACAAGAGCACTTCTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093800.9 |
||