RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLPP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028517

Ensembl transcript IDs: ENSMUST00000064139.8

Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGCAAGATCAACTCCTGCAAAGACCCTCGGGGCTCCCTTATCTTaGAGGGTAGCCTTTTGGGCACGAGACCCTCTGCTACTCTGGCTC +
Preference number: 1 (lower is better)
Translates to: TARSTPAKTLGAPLS*RVAFWARDPLLLWL
Trigger: GAGCCAGAGTAGCAGAGGGTCTCGTGCCCAAAAGGCTACCCTTCAAGATAAGGGAGCCCCGAGGGTCTTTGCAGGAGTTGATCTTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 90 bp TCCTTGACAAGCCCGTGCTCACTAGAACATGAACACTTAACTGGCTaGACAGCCAGCACTCAGGACTCCCGCACTGTTGTCTCCACACAG +
Preference number: 1 (lower is better)
Translates to: SLTSPCSLEHEHLTG*TASTQDSRTVVSTQ
Trigger: CTGTGTGGAGACAACAGTGCGGGAGTCCTGAGTGCTGGCTGTGCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 90 bp ACAGATTTAACCCATGTGTTCTGCCCAGCAGAACCCACCAAGAACTaGCCCAGGGGTCAACCCCGGGACAATAGTGCTCTACACAGCAAG +
Preference number: 1 (lower is better)
Translates to: TDLTHVFCPAEPTKN*PRGQPRDNSALHSK
Trigger: CTTGCTGTGTAGAGCACTATTGTCCCGGGGTTGACCCCTGGGGCAGTTCTTGGTGGGTTCTGCTGGGCAGAACACATGGGTTAAATCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CCA 90 bp GAGGCTCTTTCAATCAGCCAAAGATTGACCAGGTCTGTGCATCCCTaGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAA +
Preference number: 1 (lower is better)
Translates to: EALSISQRLTRSVHP*PSHEILVGIQQGSQ
Trigger: TTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGAGCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR TCA 90 bp TATTCTAGTGTTTTGCTCCTTGACAAGCCCGTGCTCACTAGAACATaGACACTTAACTGGCTGCACAGCCAGCACTCAGGACTCCCGCAC +
Preference number: 1 (lower is better)
Translates to: YSSVLLLDKPVLTRT*TLNWLHSQHSGLPH
Trigger: GTGCGGGAGTCCTGAGTGCTGGCTGTGCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAACACTAGAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CCA 90 bp TTCAGTAGAAGGGTCCTTGTCTACTGTCTAGAGGGGGACCTTGCTTaGAAGGACACTTGTGGATGGAGGATGAGGAAAACTCTCTACACA +
Preference number: 1 (lower is better)
Translates to: FSRRVLVYCLEGDLA*KDTCGWRMRKTLYT
Trigger: TGTGTAGAGAGTTTTCCTCATCCTCCATCCACAAGTGTCCTTCCAAGCAAGGTCCCCCTCTAGACAGTAGACAAGGACCCTTCTACTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 90 bp AGCCTCTGCTCAATTATTCTAGTGTTTTGCTCCTTGACAAGCCCGTaGTCACTAGAACATGAACACTTAACTGGCTGCACAGCCAGCACT +
Preference number: 1 (lower is better)
Translates to: SLCSIILVFCSLTSP*SLEHEHLTGCTAST
Trigger: AGTGCTGGCTGTGCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAACACTAGAATAATTGAGCAGAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CCA 90 bp GTCTACTGTCTAGAGGGGGACCTTGCTTGGAAGGACACTTGTGGATaGAGGATGAGGAAAACTCTCTACACAGATTTAACCCATGTGTTC +
Preference number: 1 (lower is better)
Translates to: VYCLEGDLAWKDTCG*RMRKTLYTDLTHVF
Trigger: GAACACATGGGTTAAATCTGTGTAGAGAGTTTTCCTCATCCTCCATCCACAAGTGTCCTTCCAAGCAAGGTCCCCCTCTAGACAGTAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR TCA 90 bp ATCCCTGGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAAGGGGCTGGGGATGGGGAGATaGCAGAGGCCTCAGGTCTTG +
Preference number: 2 (lower is better)
Translates to: IPGPHMKSWSASSKDLKGLGMGR*QRPQVL
Trigger: CAAGACCTGAGGCCTCTGTCATCTCCCCATCCCCAG...CCCCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 90 bp CACAGCAAGATCAACTCCTGCAAAGACCCTCGGGGCTCCCTTATCTaGAAGGGTAGCCTTTTGGGCACGAGACCCTCTGCTACTCTGGCT +
Preference number: 2 (lower is better)
Translates to: HSKINSCKDPRGSLI*KGSLLGTRPSATLA
Trigger: AGCCAGAGTAGCAGAGGGTCTCGTGCCCAAAAGGCTACCCTTCAAGATAAGGGAGCCCCGAGGGTCTTTGCAGGAGTTGATCTTGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CCA 90 bp CGGGACAATAGTGCTCTACACAGCAAGATCAACTCCTGCAAAGACCCTCGGGGCCCTCACATGAAATCCTaGTCGGCATCCAGCAAGGAT +
Preference number: 2 (lower is better)
Translates to: RDNSALHSKINSCKDPRGPHMKS*SASSKD
Trigger: ATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGG...GCCCCGAGGGTCTTTGCAGGAGTTGATCTTGCTGTGTAGAGCACTATTGTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR TCA 90 bp CTCTACACAGATTTAACCCATGTGTTCTGCCCAGCAGAACCCACCAAGAACTGCTCGGGTCACAAAAGATaGCCCCAGCCTCTGCTCAAT +
Preference number: 2 (lower is better)
Translates to: LYTDLTHVFCPAEPTKNCSGHKR*PQPLLN
Trigger: ATTGAGCAGAGGCTGGGGTCATCTTTTGTGACCCGA...GCAGTTCTTGGTGGGTTCTGCTGGGCAGAACACATGGGTTAAATCTGTGTAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR GCA 90 bp ATCCCTGGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAAGGGGGATGACCCCAGCCTCTaGTCAATTATTCTAGTGTTT +
Preference number: 2 (lower is better)
Translates to: IPGPHMKSWSASSKDLKGDDPSL*SIILVF
Trigger: AAACACTAGAATAATTGAGCAGAGGCTGGGGTCATC...CCCCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CCA 90 bp ATGAAAGGACGGAGTCTGGGAGGGTGTAGATGTGGTCATTCCAGATGGTTACATGAGGGGGACCTTGCTTaGAAGGACACTTGTGGATGG +
Preference number: 2 (lower is better)
Translates to: MKGRSLGGCRCGHSRWLHEGDLA*KDTCGW
Trigger: CCATCCACAAGTGTCCTTCCAAGCAAGGTCCCCCTC...ATGTAACCATCTGGAATGACCACATCTACACCCTCCCAGACTCCGTCCTTTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 90 bp CTCTCTCCTTGTCTCTTTACTGAGGCTCTTTCAATCAGCCAAAGATaGACCAGGTCTGTGCATCCCTGGCCCTCACATGAAATCCTGGTC +
Preference number: 2 (lower is better)
Translates to: LSPCLFTEALSISQR*TRSVHPWPSHEILV
Trigger: GACCAGGATTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGAGCCTCAGTAAAGAGACAAGGAGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 90 bp GGTCCTTGTCTACTGTCTAGAGGGGGACCTTGCTTGGAAGGACACTaGTGGATGGAGGATGAGGAAAACTCTCTACACAGATTTAACCCA +
Preference number: 2 (lower is better)
Translates to: GPCLLSRGGPCLEGH*WMEDEENSLHRFNP
Trigger: TGGGTTAAATCTGTGTAGAGAGTTTTCCTCATCCTCCATCCACAAGTGTCCTTCCAAGCAAGGTCCCCCTCTAGACAGTAGACAAGGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGAGAGGCCTCAGGTCTTaGGGGTTGGGATTCAGGATC +
Preference number: 2 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGRGLRS*GLGFRI
Trigger: GATCCTGAATCCCAACCCCCAAGACCTGAGGCCTCT...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 90 bp AAAGATGACCCCAGCCTCTGCTCAATTATTCTAGTGTTTTGCTCCTaGACAAGCCCGTGCTCACTAGAACATGAACACTTAACTGGCTGC +
Preference number: 2 (lower is better)
Translates to: KDDPSLCSIILVFCS*TSPCSLEHEHLTGC
Trigger: GCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAACACTAGAATAATTGAGCAGAGGCTGGGGTCATCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR GCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGTCCTTGACAAGCCCGTaGTCACTAGAACATGAACAC +
Preference number: 2 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGSLTSP*SLEHEH
Trigger: GTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGA...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR GCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGATTATTCTAGTGTTTTaGTCCTTGACAAGCCCGTGC +
Preference number: 2 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGIILVF*SLTSPC
Trigger: GCACGGGCTTGTCAAGGAGCAAAACACTAGAATAAT...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 72 bp ACCCATGTGTTCTGCCCAGCAGAACCCACCAAGAACTaGCCCAGGGGTCAACCCCGGGACAATAGTGCTCTA +
Preference number: 3 (lower is better)
Translates to: THVFCPAEPTKN*PRGQPRDNSAL
Trigger: TAGAGCACTATTGTCCCGGGGTTGACCCCTGGGGCAGTTCTTGGTGGGTTCTGCTGGGCAGAACACATGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CAA 90 bp ATCCCTGGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAAGGGGAGGACTCCCGCACTGTaGTCTCCACACAGGCAAACA +
Preference number: 3 (lower is better)
Translates to: IPGPHMKSWSASSKDLKGRTPAL*SPHRQT
Trigger: TGTTTGCCTGTGTGGAGACAACAGTGCGGGAGTCCT...CCCCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR TCA 72 bp TCAACTCCTGCAAAGACCCTCGGGGCTCCCTTATCTTaGAGGGTAGCCTTTTGGGCACGAGACCCTCTGCTA +
Preference number: 3 (lower is better)
Translates to: STPAKTLGAPLS*RVAFWARDPLL
Trigger: TAGCAGAGGGTCTCGTGCCCAAAAGGCTACCCTTCAAGATAAGGGAGCCCCGAGGGTCTTTGCAGGAGTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR TCA 72 bp AAGATTGACCAGGTCTGTGCATCCCTGGCCCTCACATaGAATCCTGGTCGGCATCCAGCAAGGATCTCAAGG +
Preference number: 3 (lower is better)
Translates to: KIDQVCASLALT*NPGRHPARISR
Trigger: CCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 72 bp CGGGACAATAGTGCTCTACACAGCAAGATCAACTCCTaGAAAGACCCTCGGGGCTCCCTTATCTTGAAGGGT +
Preference number: 3 (lower is better)
Translates to: RDNSALHSKINS*KDPRGSLILKG
Trigger: ACCCTTCAAGATAAGGGAGCCCCGAGGGTCTTTGCAGGAGTTGATCTTGCTGTGTAGAGCACTATTGTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR TCA 72 bp GTTTTGCTCCTTGACAAGCCCGTGCTCACTAGAACATaGACACTTAACTGGCTGCACAGCCAGCACTCAGGA +
Preference number: 3 (lower is better)
Translates to: VLLLDKPVLTRT*TLNWLHSQHSG
Trigger: TCCTGAGTGCTGGCTGTGCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CCA 72 bp AGGGTCCTTGTCTACTGTCTAGAGGGGGACCTTGCTTaGAAGGACACTTGTGGATGGAGGATGAGGAAAACT +
Preference number: 3 (lower is better)
Translates to: RVLVYCLEGDLA*KDTCGWRMRKT
Trigger: AGTTTTCCTCATCCTCCATCCACAAGTGTCCTTCCAAGCAAGGTCCCCCTCTAGACAGTAGACAAGGACCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CAA 90 bp CAAAGATTGACCAGGTCTGTGCATCCCTGGCCCTCACATGAAATCCTGGTCGGCAATTATTCTAGTGTTTaGCTCCTTGACAAGCCCGTG +
Preference number: 3 (lower is better)
Translates to: QRLTRSVHPWPSHEILVGNYSSV*LLDKPV
Trigger: CACGGGCTTGTCAAGGAGCAAAACACTAGAATAATT...GCCGACCAGGATTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR TCA 72 bp GTCTCTTTACTGAGGCTCTTTCAATCAGCCAAAGATTaGCCAGGTCTGTGCATCCCTGGCCCTCACATGAAA +
Preference number: 3 (lower is better)
Translates to: VSLLRLFQSAKD*PGLCIPGPHMK
Trigger: TTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGAGCCTCAGTAAAGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CAA 90 bp CTCTACACAGATTTAACCCATGTGTTCTGCCCAGCAGAACCCACCAAGAACTGCGGCAAACAACCTATTTaGGAAGGCCACAAGATAAGG +
Preference number: 3 (lower is better)
Translates to: LYTDLTHVFCPAEPTKNCGKQPI*EGHKIR
Trigger: CCTTATCTTGTGGCCTTCCAAAATAGGTTGTTTGCC...GCAGTTCTTGGTGGGTTCTGCTGGGCAGAACACATGGGTTAAATCTGTGTAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 72 bp GATGACCCCAGCCTCTGCTCAATTATTCTAGTGTTTTaGTCCTTGACAAGCCCGTGCTCACTAGAACATGAA +
Preference number: 3 (lower is better)
Translates to: DDPSLCSIILVF*SLTSPCSLEHE
Trigger: TTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAACACTAGAATAATTGAGCAGAGGCTGGGGTCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR TCA 72 bp AGACACCCTCTGTGTCTTCTGAACTTGTGCTATTTGTaGAGTTCACTCTTCCACAAAGGGTCTCCTAATCTC +
Preference number: 3 (lower is better)
Translates to: RHPLCLLNLCYL*SSLFHKGSPNL
Trigger: GAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAATAGCACAAGTTCAGAAGACACAGAGGGTGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR GCA 72 bp TCAATTATTCTAGTGTTTTGCTCCTTGACAAGCCCGTaGTCACTAGAACATGAACACTTAACTGGCTGCACA +
Preference number: 3 (lower is better)
Translates to: SIILVFCSLTSP*SLEHEHLTGCT
Trigger: TGTGCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAACACTAGAATAATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR-3UTR CAA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGCACACACAAACTTCCTaGAATCAAAGTCACAGTAGA +
Preference number: 3 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGHTQTS*NQSHSR
Trigger: TCTACTGTGACTTTGATTCAAGGAAGTTTGTGTGTG...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp CAAAGATTGACCAGGTCTGTGCATCCCTGGCCCTCACATGAAATCCTGGTCGGCTCCTCGGGTTGTTGTTaGGCGCCGGGCTGCCGCCGT +
Preference number: 4 (lower is better)
Translates to: QRLTRSVHPWPSHEILVGSSGCC*APGCRR
Trigger: ACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGA...GCCGACCAGGATTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp ATCCCTGGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAAGGGGCGCAGGGGCGGGCAGTaGGAGGCTCGTCTTAGTCTT +
Preference number: 4 (lower is better)
Translates to: IPGPHMKSWSASSKDLKGRRGGQ*EARLSL
Trigger: AAGACTAAGACGAGCCTCTCACTGCCCGCCCCTGCG...CCCCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CCA 90 bp CGGGACAATAGTGCTCTACACAGCAAGATCAACTCCTGCAAAGACCCTCGGGGCGCCTCAGGCGCCCGATaGACACTTTGGCGATGTCGG +
Preference number: 4 (lower is better)
Translates to: RDNSALHSKINSCKDPRGASGAR*TLWRCR
Trigger: CCGACATCGCCAAAGTGTCCATCGGGCGCCTGAGGC...GCCCCGAGGGTCTTTGCAGGAGTTGATCTTGCTGTGTAGAGCACTATTGTCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp GACCCTCGGGGCTCCCTTATCTTGAAGGGTAGCCTTTaGGGCACGAGACCCTCTGCTACTCTGGCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: DPRGSLILKGSL*GTRPSATLALS
Trigger: AGAGAGAGCCAGAGTAGCAGAGGGTCTCGTGCCCAAAAGGCTACCCTTCAAGATAAGGGAGCCCCGAGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR GCA 90 bp GCACAGCCAGCACTCAGGACTCCCGCACTGTTGTCTCCACACAGGCAAACAACCTGGCCTCCTGTACTTTaGTGTCTTCTCCTCTGCACC +
Preference number: 4 (lower is better)
Translates to: AQPALRTPALLSPHRQTTWPPVL*CLLLCT
Trigger: GGTGCAGAGGAGAAGACAGCAAAGTACAGGAGGCCA...GGTTGTTTGCCTGTGTGGAGACAACAGTGCGGGAGTCCTGAGTGCTGGCTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp ATCCCTGGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAAGGGGGATTGTTCCTGTCGATaGTGTCCACGGGAGACAGGA +
Preference number: 4 (lower is better)
Translates to: IPGPHMKSWSASSKDLKGDCSCR*CPRETG
Trigger: TCCTGTCTCCCGTGGACATCATCGACAGGAACAATC...CCCCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp ATCAACTCCTGCAAAGACCCTCGGGGCTCCCTTATCTaGAAGGGTAGCCTTTTGGGCACGAGACCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: INSCKDPRGSLI*KGSLLGTRPSA
Trigger: AGCAGAGGGTCTCGTGCCCAAAAGGCTACCCTTCAAGATAAGGGAGCCCCGAGGGTCTTTGCAGGAGTTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp ATGAAAGGACGGAGTCTGGGAGGGTGTAGATGTGGTCATTCCAGATGGTTACATAGAGGTCCAGGCAGATaGGCAGCACCCGCTTGCTGC +
Preference number: 4 (lower is better)
Translates to: MKGRSLGGCRCGHSRWLHRGPGR*AAPACC
Trigger: GCAGCAAGCGGGTGCTGCTCATCTGCCTGGACCTCT...ATGTAACCATCTGGAATGACCACATCTACACCCTCCCAGACTCCGTCCTTTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGGGGCCCCGCGCCAGGTaGAGCGGGCCTGAAGGTAGA +
Preference number: 4 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGGPRAR*SGPEGR
Trigger: TCTACCTTCAGGCCCGCTTCACCTGGCGCGGGGCCC...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CCA 90 bp TTCTGGCCTGGGATTTCTCGGGTCACAAAAGATGACCCCAGCCTCTGCTCAATTGCCACCAGAGCTCCTTaGGCAAATCCTGCCAGGACA +
Preference number: 4 (lower is better)
Translates to: FWPGISRVTKDDPSLCSIATRAP*ANPART
Trigger: TGTCCTGGCAGGATTTGCCCAAGGAGCTCTGGTGGC...AATTGAGCAGAGGCTGGGGTCATCTTTTGTGACCCGAGAAATCCCAGGCCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CCA 90 bp ACAAGCCCGTGCTCACTAGAACATGAACACTTAACTGGCTGCACAGCCAGCACTATGGAGAAGGAGGCGTaGCCCGAGAAGAAGGACTTC +
Preference number: 4 (lower is better)
Translates to: TSPCSLEHEHLTGCTASTMEKEA*PEKKDF
Trigger: GAAGTCCTTCTTCTCGGGCCACGCCTCCTTCTCCAT...AGTGCTGGCTGTGCAGCCAGTTAAGTGTTCATGTTCTAGTGAGCACGGGCTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp CAAAGATTGACCAGGTCTGTGCATCCCTGGCCCTCACATGAAATCCTGGTCGGCCTTTCAGGGGATACTTaGTGCTCTCGTCATTGCAGT +
Preference number: 4 (lower is better)
Translates to: QRLTRSVHPWPSHEILVGLSGDT*CSRHCS
Trigger: ACTGCAATGACGAGAGCATCAAGTATCCCCTGAAAG...GCCGACCAGGATTTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR GCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGGCAGCACCCGCTTGCTaGCGCCCTTCCTCGGGTTGT +
Preference number: 4 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGAAPAC*RPSSGC
Trigger: ACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGC...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp TTCTGGCCTGGGATTTCTCGGGTCACAAAAGATGACCCCAGCCTCTGCTCAATTAGCGGGACTTCTCCTTaGGGTAATAGATCCGGTAGA +
Preference number: 4 (lower is better)
Translates to: FWPGISRVTKDDPSLCSISGTSP*GNRSGR
Trigger: TCTACCGGATCTATTACCTCAAGGAGAAGTCCCGCT...AATTGAGCAGAGGCTGGGGTCATCTTTTGTGACCCGAGAAATCCCAGGCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp AAGGGTCCTTGTCTACTGTCTAGAGGGGGACCTTGCTaGGAAGGACACTTGTGGATGGAGGATGAGGAAAAC +
Preference number: 4 (lower is better)
Translates to: KGPCLLSRGGPC*EGHLWMEDEEN
Trigger: GTTTTCCTCATCCTCCATCCACAAGTGTCCTTCCAAGCAAGGTCCCCCTCTAGACAGTAGACAAGGACCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp TTTGAGGCACACACACACACACACACACAAACTTCCTaGAATCAAAGTCACAGTAGAGTGGGGCGGGCAGAG +
Preference number: 4 (lower is better)
Translates to: FEAHTHTHTQTS*NQSHSRVGRAE
Trigger: CTCTGCCCGCCCCACTCTACTGTGACTTTGATTCAAGGAAGTTTGTGTGTGTGTGTGTGTGTGTGCCTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CCA 90 bp ATGAAAGGACGGAGTCTGGGAGGGTGTAGATGTGGTCATTCCAGATGGTTACATATGTCGGTGAAGGACTaGCTAATGGCACAGCCGAAA +
Preference number: 4 (lower is better)
Translates to: MKGRSLGGCRCGHSRWLHMSVKD*LMAQPK
Trigger: TTTCGGCTGTGCCATTAGCCAGTCCTTCACCGACAT...ATGTAACCATCTGGAATGACCACATCTACACCCTCCCAGACTCCGTCCTTTCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp TGTCTCTTTACTGAGGCTCTTTCAATCAGCCAAAGATaGACCAGGTCTGTGCATCCCTGGCCCTCACATGAA +
Preference number: 4 (lower is better)
Translates to: CLFTEALSISQR*TRSVHPWPSHE
Trigger: TTCATGTGAGGGCCAGGGATGCACAGACCTGGTCAATCTTTGGCTGATTGAAAGAGCCTCAGTAAAGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp ACGGGACTGAAAAATTGTGTGCCCATTCCCGGAATTTaGAGGCACACACACACACACACACACAAACTTCCT +
Preference number: 4 (lower is better)
Translates to: TGLKNCVPIPGI*RHTHTHTHKLP
Trigger: AGGAAGTTTGTGTGTGTGTGTGTGTGTGTGCCTCAAAATTCCGGGAATGGGCACACAATTTTTCAGTCCCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
3UTR CAA 72 bp CCCAGCCTCTGCTCAATTATTCTAGTGTTTTGCTCCTaGACAAGCCCGTGCTCACTAGAACATGAACACTTA +
Preference number: 4 (lower is better)
Translates to: PSLCSIILVFCS*TSPCSLEHEHL
Trigger: TAAGTGTTCATGTTCTAGTGAGCACGGGCTTGTCAAGGAGCAAAACACTAGAATAATTGAGCAGAGGCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp TGTCTCCACACAGGCAAACAACCTATTTTGGAAGGCCACAAGATAAGGCTTTTTTCGGAGCAATTGATCTaGCTGAAATCAGGGTCACAG +
Preference number: 4 (lower is better)
Translates to: CLHTGKQPILEGHKIRLFSEQLI*LKSGSQ
Trigger: CTGTGACCCTGATTTCAGTCAGATCAATTGCTCCGA...AAAAAGCCTTATCTTGTGGCCTTCCAAAATAGGTTGTTTGCCTGTGTGGAGACA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR GCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGTTGCTTATAGAGAGCTaGCACATACGGGTTCTGAGT +
Preference number: 4 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGLLIES*HIRVLS
Trigger: ACTCAGAACCCGTATGTGGCAGCTCTCTATAAGCAA...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR TCA 90 bp ATTTGTGAAGTTCACTCTTCCACAAAGGGTCTCCTAATCTCTAAAAGTGAGGGGTACACCATGTTATGGTaGTTGTTCCTGTCGATGATG +
Preference number: 4 (lower is better)
Translates to: ICEVHSSTKGLLISKSEGYTMLW*LFLSMM
Trigger: CATCATCGACAGGAACAATCACCATAACATGGTGTA...CCCCTCACTTTTAGAGATTAGGAGACCCTTTGTGGAAGAGTGAACTTCACAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CAA 90 bp GCACAGCCAGCACTCAGGACTCCCGCACTGTTGTCTCCACACAGGCAAACAACCCCGCCCTTCCTCGGGTaGTTGTTGAGCGCCGGGCTG +
Preference number: 5 (lower is better)
Translates to: AQPALRTPALLSPHRQTTPPFLG*LLSAGL
Trigger: CAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGG...GGTTGTTTGCCTGTGTGGAGACAACAGTGCGGGAGTCCTGAGTGCTGGCTGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CAA 90 bp ATCCCTGGCCCTCACATGAAATCCTGGTCGGCATCCAGCAAGGATCTCAAGGGGATGAGCAGCACCCGCTaGCTGCCGCCCTTCCTCGGG +
Preference number: 5 (lower is better)
Translates to: IPGPHMKSWSASSKDLKGMSSTR*LPPFLG
Trigger: CCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCAT...CCCCTTGAGATCCTTGCTGGATGCCGACCAGGATTTCATGTGAGGGCCAGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CAA 90 bp CGGGACAATAGTGCTCTACACAGCAAGATCAACTCCTGCAAAGACCCTCGGGGCGGCCACCAGAGCTCCTaGGGCAAATCCTGCCAGGAC +
Preference number: 5 (lower is better)
Translates to: RDNSALHSKINSCKDPRGGHQSS*GKSCQD
Trigger: GTCCTGGCAGGATTTGCCCAAGGAGCTCTGGTGGCC...GCCCCGAGGGTCTTTGCAGGAGTTGATCTTGCTGTGTAGAGCACTATTGTCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CAA 90 bp CTCTACACAGATTTAACCCATGTGTTCTGCCCAGCAGAACCCACCAAGAACTGCCCCTTCCTCGGGTTGTaGTTGAGCGCCGGGCTGCCG +
Preference number: 5 (lower is better)
Translates to: LYTDLTHVFCPAEPTKNCPFLGL*LSAGLP
Trigger: CGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGG...GCAGTTCTTGGTGGGTTCTGCTGGGCAGAACACATGGGTTAAATCTGTGTAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CAA 90 bp ATGAAAGGACGGAGTCTGGGAGGGTGTAGATGTGGTCATTCCAGATGGTTACATTTCCTCGGGTTGTTGTaGAGCGCCGGGCTGCCGCCG +
Preference number: 5 (lower is better)
Translates to: MKGRSLGGCRCGHSRWLHFLGLL*SAGLPP
Trigger: CGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAA...ATGTAACCATCTGGAATGACCACATCTACACCCTCCCAGACTCCGTCCTTTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS GCA 90 bp AATGGCACAGCCGAAAAGGAAGCATCCCACTTGCTTATAGAGAGCTaGCACATACGGGTTCTGAGTGGTGGAGCGGGACTTCTCCTTGAG +
Preference number: 5 (lower is better)
Translates to: NGTAEKEASHLLIES*HIRVLSGGAGLLLE
Trigger: CTCAAGGAGAAGTCCCGCTCCACCACTCAGAACCCGTATGTGGCAGCTCTCTATAAGCAAGTGGGATGCTTCCTTTTCGGCTGTGCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS TCA 90 bp TCCTGCCAGGACATCGCTAGGATGATGCTTGTAGTCAGATACCCGTaGCAATCCCGTGTAGAAGGCCATCATGAGCAAAGTGAACTGCAG +
Preference number: 5 (lower is better)
Translates to: SCQDIARMMLVVRYP*QSRVEGHHEQSELQ
Trigger: CTGCAGTTCACTTTGCTCATGATGGCCTTCTACACGGGATTGTCACGGGTATCTGACTACAAGCATCATCCTAGCGATGTCCTGGCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS-3UTR CAA 90 bp TGTCTCCACACAGGCAAACAACCTATTTTGGAAGGCCACAAGATAAGGCTTTTTAGGCTCGTCTTAGTCTaGAAGAGGTCGGACACGAAG +
Preference number: 5 (lower is better)
Translates to: CLHTGKQPILEGHKIRLFRLVLV*KRSDTK
Trigger: CTTCGTGTCCGACCTCTTCAAGACTAAGACGAGCCT...AAAAAGCCTTATCTTGTGGCCTTCCAAAATAGGTTGTTTGCCTGTGTGGAGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS TCA 72 bp GCAGGAGGGGGCGGAGCAGTCGGGCCCCGCGCCAGGTaGAGCGGGCCTGAAGGTAGAGCACCAGATACAGCA +
Preference number: 6 (lower is better)
Translates to: AGGGGAVGPRAR*SGPEGRAPDTA
Trigger: TGCTGTATCTGGTGCTCTACCTTCAGGCCCGCTTCACCTGGCGCGGGGCCCGACTGCTCCGCCCCCTCCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS TCA 72 bp GCACCCGCTTGCTGCCGCCCTTCCTCGGGTTGTTGTTaGGCGCCGGGCTGCCGCCGTTCTTACTCTCAGGGA +
Preference number: 6 (lower is better)
Translates to: APACCRPSSGCC*APGCRRSYSQG
Trigger: TCCCTGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 72 bp AGCACCCGCTTGCTGCCGCCCTTCCTCGGGTTGTTGTaGAGCGCCGGGCTGCCGCCGTTCTTACTCTCAGGG +
Preference number: 6 (lower is better)
Translates to: STRLLPPFLGLL*SAGLPPFLLSG
Trigger: CCCTGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 90 bp CAGATGAGCAGCACCCGCTTGCTGCCGCCCTTCCTCGGGTTGTTGTaGAGCGCCGGGCTGCCGCCGTTCTTACTCTCAGGGACGATCGCC +
Preference number: 6 (lower is better)
Translates to: QMSSTRLLPPFLGLL*SAGLPPFLLSGTIA
Trigger: GGCGATCGTCCCTGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCATCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 90 bp TCCAGGCAGATGAGCAGCACCCGCTTGCTGCCGCCCTTCCTCGGGTaGTTGTTGAGCGCCGGGCTGCCGCCGTTCTTACTCTCAGGGACG +
Preference number: 6 (lower is better)
Translates to: SRQMSSTRLLPPFLG*LLSAGLPPFLLSGT
Trigger: CGTCCCTGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCATCTGCCTGGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 72 bp AGCAGCACCCGCTTGCTGCCGCCCTTCCTCGGGTTGTaGTTGAGCGCCGGGCTGCCGCCGTTCTTACTCTCA +
Preference number: 6 (lower is better)
Translates to: SSTRLLPPFLGL*LSAGLPPFLLS
Trigger: TGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 72 bp ATGAGCAGCACCCGCTTGCTGCCGCCCTTCCTCGGGTaGTTGTTGAGCGCCGGGCTGCCGCCGTTCTTACTC +
Preference number: 6 (lower is better)
Translates to: MSSTRLLPPFLG*LLSAGLPPFLL
Trigger: GAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCAT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 90 bp AGGCAGATGAGCAGCACCCGCTTGCTGCCGCCCTTCCTCGGGTTGTaGTTGAGCGCCGGGCTGCCGCCGTTCTTACTCTCAGGGACGATC +
Preference number: 6 (lower is better)
Translates to: RQMSSTRLLPPFLGL*LSAGLPPFLLSGTI
Trigger: GATCGTCCCTGAGAGTAAGAACGGCGGCAGCCCGGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCATCTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 72 bp AGGCAGAAGAGGTCCAGGCAGATGAGCAGCACCCGCTaGCTGCCGCCCTTCCTCGGGTTGTTGTTGAGCGCC +
Preference number: 6 (lower is better)
Translates to: RQKRSRQMSSTR*LPPFLGLLLSA
Trigger: GGCGCTCAACAACAACCCGAGGAAGGGCGGCAGCAAGCGGGTGCTGCTCATCTGCCTGGACCTCTTCTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS TCA 72 bp AGACAGGATCTCCCTCCTGATCGCAGGGGCGGGCAGTaGGAGGCTCGTCTTAGTCTTGAAGAGGTCGGACAC +
Preference number: 6 (lower is better)
Translates to: RQDLPPDRRGGQ*EARLSLEEVGH
Trigger: GTGTCCGACCTCTTCAAGACTAAGACGAGCCTCTCACTGCCCGCCCCTGCGATCAGGAGGGAGATCCTGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CCA 72 bp CGCCCGATGGACACTTTGGCGATGTCGGTGAAGGACTaGCTAATGGCACAGCCGAAAAGGAAGCATCCCACT +
Preference number: 6 (lower is better)
Translates to: RPMDTLAMSVKD*LMAQPKRKHPT
Trigger: AGTGGGATGCTTCCTTTTCGGCTGTGCCATTAGCCAGTCCTTCACCGACATCGCCAAAGTGTCCATCGGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 90 bp GAGGTCGGACACGAAGAACACTATGCAGCAGGCCACCAGAGCTCCTaGGGCAAATCCTGCCAGGACATCGCTAGGATGATGCTTGTAGTC +
Preference number: 6 (lower is better)
Translates to: EVGHEEHYAAGHQSS*GKSCQDIARMMLVV
Trigger: GACTACAAGCATCATCCTAGCGATGTCCTGGCAGGATTTGCCCAAGGAGCTCTGGTGGCCTGCTGCATAGTGTTCTTCGTGTCCGACCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 72 bp CACGAAGAACACTATGCAGCAGGCCACCAGAGCTCCTaGGGCAAATCCTGCCAGGACATCGCTAGGATGATG +
Preference number: 6 (lower is better)
Translates to: HEEHYAAGHQSS*GKSCQDIARMM
Trigger: CATCATCCTAGCGATGTCCTGGCAGGATTTGCCCAAGGAGCTCTGGTGGCCTGCTGCATAGTGTTCTTCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 90 bp GGTGAAGGACTGGCTAATGGCACAGCCGAAAAGGAAGCATCCCACTaGCTTATAGAGAGCTGCCACATACGGGTTCTGAGTGGTGGAGCG +
Preference number: 6 (lower is better)
Translates to: GEGLANGTAEKEASH*LIESCHIRVLSGGA
Trigger: CGCTCCACCACTCAGAACCCGTATGTGGCAGCTCTCTATAAGCAAGTGGGATGCTTCCTTTTCGGCTGTGCCATTAGCCAGTCCTTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS GCA 72 bp GCCGAAAAGGAAGCATCCCACTTGCTTATAGAGAGCTaGCACATACGGGTTCTGAGTGGTGGAGCGGGACTT +
Preference number: 6 (lower is better)
Translates to: AEKEASHLLIES*HIRVLSGGAGL
Trigger: AAGTCCCGCTCCACCACTCAGAACCCGTATGTGGCAGCTCTCTATAAGCAAGTGGGATGCTTCCTTTTCGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS GCA 72 bp TATGCAGCAGGCCACCAGAGCTCCTTGGGCAAATCCTaGCAGGACATCGCTAGGATGATGCTTGTAGTCAGA +
Preference number: 6 (lower is better)
Translates to: YAAGHQSSLGKS*QDIARMMLVVR
Trigger: TCTGACTACAAGCATCATCCTAGCGATGTCCTGGCAGGATTTGCCCAAGGAGCTCTGGTGGCCTGCTGCATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CCA 72 bp ACCAGATACAGCATAGTGAACATGGAGAAGGAGGCGTaGCCCGAGAAGAAGGACTTCCTGGCCTCCTGTACT +
Preference number: 6 (lower is better)
Translates to: TRYSIVNMEKEA*PEKKDFLASCT
Trigger: AGTACAGGAGGCCAGGAAGTCCTTCTTCTCGGGCCACGCCTCCTTCTCCATGTTCACTATGCTGTATCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS CAA 72 bp CTGGCTAATGGCACAGCCGAAAAGGAAGCATCCCACTaGCTTATAGAGAGCTGCCACATACGGGTTCTGAGT +
Preference number: 6 (lower is better)
Translates to: LANGTAEKEASH*LIESCHIRVLS
Trigger: ACTCAGAACCCGTATGTGGCAGCTCTCTATAAGCAAGTGGGATGCTTCCTTTTCGGCTGTGCCATTAGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8
CDS TCA 72 bp GACATCGCTAGGATGATGCTTGTAGTCAGATACCCGTaGCAATCCCGTGTAGAAGGCCATCATGAGCAAAGT +
Preference number: 6 (lower is better)
Translates to: DIARMMLVVRYP*QSRVEGHHEQS
Trigger: ACTTTGCTCATGATGGCCTTCTACACGGGATTGTCACGGGTATCTGACTACAAGCATCATCCTAGCGATGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064139.8