Pregenerated sensors for PLN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038583Ensembl transcript IDs: ENSMUST00000046221.8, ENSMUST00000163319.9, ENSMUST00000218468.2, ENSMUST00000219491.2, ENSMUST00000219921.2, ENSMUST00000220197.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTCTAGTTCTACTTCTAAAGTTAGGGGACAACCACTTCCTCTCTaGGAGATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGT | + |
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Preference number: 1 (lower is better) Translates to: LSSSTSKVRGQPLPL*EIRKRKSCVLLQLG Trigger: ACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATCTCCCAGAGAGGAAGTGGTTGTCCCCTAACTTTAGAAGTAGAACTAGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR TCA 90 bp | AACGCTATTAAACCAAGGAGATACATGAGAGCGACAAGCTTCAGGTaGGACTCTGGATCTTTAGTGATTATCACAGCCAACACAGCAAGA | + |
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Preference number: 1 (lower is better) Translates to: NAIKPRRYMRATSFR*DSGSLVIITANTAR Trigger: TCTTGCTGTGTTGGCTGTGATAATCACTAAAGATCCAGAGTCTCACCTGAAGCTTGTCGCTCTCATGTATCTCCTTGGTTTAATAGCGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR GCA 90 bp | AGACCTCTTACCAGTGGTTCTCAACCTGTGGGTTGCAACCCCTCATaGAAACCTGTTTCCAAAATATTTACAATTCATAGTGGAGGTAAG | + |
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Preference number: 1 (lower is better) Translates to: RPLTSGSQPVGCNPS*KPVSKIFTIHSGGK Trigger: CTTACCTCCACTATGAATTGTAAATATTTTGGAAACAGGTTTGCATGAGGGGTTGCAACCCACAGGTTGAGAACCACTGGTAAGAGGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046221.8 |
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| 3UTR TCA 90 bp | ATCATCGTCGTCATCATCATCATCGTCATCATTGTGTCATCTATGTaGGGACCCAGTGAGCTATTTTCAATAAGAACACTTCATTTAAAT | + |
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Preference number: 1 (lower is better) Translates to: IIVVIIIIVIIVSSM*GPSELFSIRTLHLN Trigger: ATTTAAATGAAGTGTTCTTATTGAAAATAGCTCACTGGGTCCTCACATAGATGACACAATGATGACGATGATGATGATGACGACGATGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR-3UTR CCA 90 bp | GTGACCCTCACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTGCGTTGCTTCCCCCGGCTTTAAGCTGAGTTaGCATGTTGCAGGTCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: VTLTKLFSAGRQRCVASPGFKLS*HVAGLE Trigger: CTCCAGACCTGCAACATGCCAACTCAGCTTAAAGCC...GGGGGAAGCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTGAGGGTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| 3UTR-3UTR CCA 90 bp | CTTAATCGTGACCCTCACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTGCGTTGCGGCTTTAAGCTGAGTTaGCATGTTGCAGGTCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: LNRDPHKAVLSRKAAVRCGFKLS*HVAGLE Trigger: CTCCAGACCTGCAACATGCCAACTCAGCTTAAAGCC...GCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTGAGGGTCACGATTAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| 3UTR-3UTR CCA 90 bp | CTTTCTACCAGGGGTTCAAACAGTTTAAATCAGCAGCCTTCAGCTGCTCTGCTACAACCACTTCCTCTCTaGGAGATCAGGAAAAGAAAG | + |
|
Preference number: 2 (lower is better) Translates to: LSTRGSNSLNQQPSAALLQPLPL*EIRKRK Trigger: CTTTCTTTTCCTGATCTCCCAGAGAGGAAGTGGTTG...TAGCAGAGCAGCTGAAGGCTGCTGATTTAAACTGTTTGAACCCCTGGTAGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000220197.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCCTTTCTACCAGGGGTTCAAACAGTTTAAATCAGCAGCCTTCAGCTGCTCTATTGTGTCATCTATGTaGGGACCCAGTGAGCTATTT | + |
|
Preference number: 2 (lower is better) Translates to: LPFYQGFKQFKSAAFSCSIVSSM*GPSELF Trigger: AAATAGCTCACTGGGTCCTCACATAGATGACACAAT...AGAGCAGCTGAAGGCTGCTGATTTAAACTGTTTGAACCCCTGGTAGAAAGGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000220197.2 |
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| 3UTR-3UTR TCA 90 bp | AGCCAACACAGCAAGATGTTCCTGCTTGTTGATCAAACCCTAGAGAGAGCAGATATTGTGTCATCTATGTaGGGACCCAGTGAGCTATTT | + |
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Preference number: 2 (lower is better) Translates to: SQHSKMFLLVDQTLERADIVSSM*GPSELF Trigger: AAATAGCTCACTGGGTCCTCACATAGATGACACAAT...ATCTGCTCTCTCTAGGGTTTGATCAACAAGCAGGAACATCTTGCTGTGTTGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR-3UTR CCA 90 bp | GGAAAGAAATTTATGAGCCATGTTGAGGAAATTGGCAGCTACATTATGCACACTGGCTTTAAGCTGAGTTaGCATGTTGCAGGTCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: GKKFMSHVEEIGSYIMHTGFKLS*HVAGLE Trigger: CTCCAGACCTGCAACATGCCAACTCAGCTTAAAGCC...AGTGTGCATAATGTAGCTGCCAATTTCCTCAACATGGCTCATAAATTTCTTTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGGTAGTGGCAATGCAGTATATATTCCATTTATTCCCCAGACTGGAGCTATAGGCTTTAAGCTGAGTTaGCATGTTGCAGGTCTGGAG | + |
|
Preference number: 2 (lower is better) Translates to: KGSGNAVYIPFIPQTGAIGFKLS*HVAGLE Trigger: CTCCAGACCTGCAACATGCCAACTCAGCTTAAAGCC...TATAGCTCCAGTCTGGGGAATAAATGGAATATATACTGCATTGCCACTACCTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR-3UTR CCA 90 bp | GCCACTGTAAAGTTTGTTTACAAGATCCAGCAGATGAATACACTGGCTAACAATGGCTTTAAGCTGAGTTaGCATGTTGCAGGTCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: ATVKFVYKIQQMNTLANNGFKLS*HVAGLE Trigger: CTCCAGACCTGCAACATGCCAACTCAGCTTAAAGCC...ATTGTTAGCCAGTGTATTCATCTGCTGGATCTTGTAAACAAACTTTACAGTGGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCCTTTCTACCAGGGGTTCAAACAGTTTAAATCAGCAGCCTTCAGCTGCTCTCTTCAGGTGAGACTCTaGATCTTTAGTGATTATCAC | + |
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Preference number: 2 (lower is better) Translates to: LPFYQGFKQFKSAAFSCSLQVRL*IFSDYH Trigger: GTGATAATCACTAAAGATCCAGAGTCTCACCTGAAG...AGAGCAGCTGAAGGCTGCTGATTTAAACTGTTTGAACCCCTGGTAGAAAGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000220197.2 |
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| 3UTR-3UTR TCA 90 bp | CATTATTTGAGAAACGCTATTAAACCAAGGAGATACATGAGAGCGACAAGCTTCGATGTTCCTGCTTGTTaGTCAAACCCTAGAGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: HYLRNAIKPRRYMRATSFDVPAC*SNPRES Trigger: GCTCTCTCTAGGGTTTGATCAACAAGCAGGAACATC...GAAGCTTGTCGCTCTCATGTATCTCCTTGGTTTAATAGCGTTTCTCAAATAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR CAA 90 bp | AGCAAGATGTTCCTGCTTGTTGATCAAACCCTAGAGAGAGCAGATTaGTGGTTAATGTACATGTACATGTACACAGCCCTTGAGCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: SKMFLLVDQTLERAD*WLMYMYMYTALEQN Trigger: ATTTTGCTCAAGGGCTGTGTACATGTACATGTACATTAACCACAAATCTGCTCTCTCTAGGGTTTGATCAACAAGCAGGAACATCTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR-3UTR TCA 90 bp | CTCTGGGAGATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGTTATTACTACTTTGTGGAGAACTaGAGAACACTTAGTTCCTAT | + |
|
Preference number: 2 (lower is better) Translates to: LWEIRKRKSCVLLQLGYYYFVEN*RTLSSY Trigger: ATAGGAACTAAGTGTTCTTCAGTTCTCCACAAAGTA...GTAATAACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATCTCCCAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR-3UTR TCA 90 bp | ACTGAGTTAGAGATGATGTCATCCATGTTTTATAGTTTCTGTGATGGGCCCCTCTACTTTGTGGAGAACTaGAGAACACTTAGTTCCTAT | + |
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Preference number: 2 (lower is better) Translates to: TELEMMSSMFYSFCDGPLYFVEN*RTLSSY Trigger: ATAGGAACTAAGTGTTCTTCAGTTCTCCACAAAGTA...GAGGGGCCCATCACAGAAACTATAAAACATGGATGACATCATCTCTAACTCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000220197.2 |
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| 3UTR-3UTR TCA 90 bp | CATTATTTGAGAAACGCTATTAAACCAAGGAGATACATGAGAGCGACAAGCTTCATTGTGTCATCTATGTaGGGACCCAGTGAGCTATTT | + |
|
Preference number: 2 (lower is better) Translates to: HYLRNAIKPRRYMRATSFIVSSM*GPSELF Trigger: AAATAGCTCACTGGGTCCTCACATAGATGACACAAT...GAAGCTTGTCGCTCTCATGTATCTCCTTGGTTTAATAGCGTTTCTCAAATAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR-3UTR TCA 90 bp | CATTATTTGAGAAACGCTATTAAACCAAGGAGATACATGAGAGCGACAAGCTTCCATGTACACAGCCCTTaGGCAAAATTAGTGAATAAT | + |
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Preference number: 2 (lower is better) Translates to: HYLRNAIKPRRYMRATSFHVHSP*AKLVNN Trigger: ATTATTCACTAATTTTGCTCAAGGGCTGTGTACATG...GAAGCTTGTCGCTCTCATGTATCTCCTTGGTTTAATAGCGTTTCTCAAATAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR GCA 72 bp | CACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTGCGTTaGTTCCCCCATGACGGAGTGCTCGGCTTTAAGCTG | + |
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Preference number: 3 (lower is better) Translates to: HKAVLSRKAAVR*FPHDGVLGFKL Trigger: CAGCTTAAAGCCGAGCACTCCGTCATGGGGGAAGCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| 3UTR GCA 72 bp | ACCCTCACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTaGGTTGCTTCCCCCATGACGGAGTGCTCGGCTTTA | + |
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Preference number: 3 (lower is better) Translates to: TLTKLFSAGRQR*VASPMTECSAL Trigger: TAAAGCCGAGCACTCCGTCATGGGGGAAGCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTGAGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| 3UTR-3UTR CAA 90 bp | CTTCCTTTCTACCAGGGGTTCAAACAGTTTAAATCAGCAGCCTTCAGCTGCTCTGCAAGATGTTCCTGCTaGTTGATCAAACCATTTCCC | + |
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Preference number: 3 (lower is better) Translates to: LPFYQGFKQFKSAAFSCSARCSC*LIKPFP Trigger: GGGAAATGGTTTGATCAACAAGCAGGAACATCTTGC...AGAGCAGCTGAAGGCTGCTGATTTAAACTGTTTGAACCCCTGGTAGAAAGGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220197.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTCCTCTCTGGGAGATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGTCATCATCGTCATCATaGTGTCATCTATGTGAGGAC | + |
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Preference number: 3 (lower is better) Translates to: TSSLGDQEKKELCLTTAWSSSSS*CHLCED Trigger: GTCCTCACATAGATGACACAATGATGACGATGATGA...CCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATCTCCCAGAGAGGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR TCA 72 bp | AAACCAAGGAGATACATGAGAGCGACAAGCTTCAGGTaGGACTCTGGATCTTTAGTGATTATCACAGCCAAC | + |
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Preference number: 3 (lower is better) Translates to: KPRRYMRATSFR*DSGSLVIITAN Trigger: GTTGGCTGTGATAATCACTAAAGATCCAGAGTCTCACCTGAAGCTTGTCGCTCTCATGTATCTCCTTGGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR TCA 72 bp | TTGGACTCCTTTAGGGGCTACTCTTTAGATAATTTCTaGACCCGAACAGCTTCCTTTCTACCAGGGGTTCAA | + |
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Preference number: 3 (lower is better) Translates to: LDSFRGYSLDNF*TRTASFLPGVQ Trigger: TTGAACCCCTGGTAGAAAGGAAGCTGTTCGGGTTCAGAAATTATCTAAAGAGTAGCCCCTAAAGGAGTCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000220197.2 |
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| 3UTR GCA 72 bp | TACAGACCTCTTACCAGTGGTTCTCAACCTGTGGGTTaGAACCCCTCATGCAAACCTGTTTCCAAAATATTT | + |
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Preference number: 3 (lower is better) Translates to: YRPLTSGSQPVG*NPSCKPVSKIF Trigger: AAATATTTTGGAAACAGGTTTGCATGAGGGGTTGCAACCCACAGGTTGAGAACCACTGGTAAGAGGTCTGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046221.8 |
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| 3UTR GCA 72 bp | GTTGATGTGGTAGTGAGCAATATAACAAATGCCTGGTaGTTTTCAGCTTCAGCGTCACGTTTCTCTCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: VDVVVSNITNAW*FSASASRFSQH Trigger: ATGCTGAGAGAAACGTGACGCTGAAGCTGAAAAGCACCAGGCATTTGTTATATTGCTCACTACCACATCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046221.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTACCAGGGGTTCAAACAGTTTAAATCAGCAGCCTTCAGCTGCTCTGCTAGTGTCTTACTACAGCTaGGTTATTACTGTTATCTTC | + |
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Preference number: 3 (lower is better) Translates to: LSTRGSNSLNQQPSAALLVSYYS*VITVIF Trigger: GAAGATAACAGTAATAACCAAGCTGTAGTAAGACAC...TAGCAGAGCAGCTGAAGGCTGCTGATTTAAACTGTTTGAACCCCTGGTAGAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000220197.2 |
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| 3UTR TCA 72 bp | TTATCACAGCCAACACAGCAAGATGTTCCTGCTTGTTaGTCAAACCCTAGAGAGAGCAGATTTGTGGTTAAT | + |
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Preference number: 3 (lower is better) Translates to: LSQPTQQDVPAC*SNPRESRFVVN Trigger: ATTAACCACAAATCTGCTCTCTCTAGGGTTTGATCAACAAGCAGGAACATCTTGCTGTGTTGGCTGTGATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR-3UTR CAA 90 bp | GTTGATCAAACCCTAGAGAGAGCAGATTTGTGGTTAATGTACATGTACATGTACGCCATGTTGAGGAAATaGGCAGCTACATTATGCACA | + |
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Preference number: 3 (lower is better) Translates to: VDQTLERADLWLMYMYMYAMLRK*AATLCT Trigger: TGTGCATAATGTAGCTGCCAATTTCCTCAACATGGC...GTACATGTACATGTACATTAACCACAAATCTGCTCTCTCTAGGGTTTGATCAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR-3UTR CAA 90 bp | GTTGATCAAACCCTAGAGAGAGCAGATTTGTGGTTAATGTACATGTACATGTACGTGACCTTGCTAGAGTaGGATATAGAAAGTGAACTT | + |
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Preference number: 3 (lower is better) Translates to: VDQTLERADLWLMYMYMYVTLLE*DIESEL Trigger: AAGTTCACTTTCTATATCCAACTCTAGCAAGGTCAC...GTACATGTACATGTACATTAACCACAAATCTGCTCTCTCTAGGGTTTGATCAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| 3UTR CCA 72 bp | TGGCAATGCAGTATATATTCCATTTATTCCCCAGACTaGAGCTATAAAGTGACCTTGCTAGAGTTGGATATA | + |
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Preference number: 3 (lower is better) Translates to: WQCSIYSIYSPD*SYKVTLLELDI Trigger: TATATCCAACTCTAGCAAGGTCACTTTATAGCTCCAGTCTGGGGAATAAATGGAATATATACTGCATTGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR-3UTR CAA 90 bp | ATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGTTATTACTGTTATCTTTCATCATCGTCATCATaGTGTCATCTATGTGAGGAC | + |
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Preference number: 3 (lower is better) Translates to: IRKRKSCVLLQLGYYCYLSSSSS*CHLCED Trigger: GTCCTCACATAGATGACACAATGATGACGATGATGA...AAGATAACAGTAATAACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR TCA 72 bp | AAAGGCAGCATTAAATGTTTAATGAGAAGAGCCTTATaGGCTGACAGTTTATACCTTGAAGTTGATGTGGTA | + |
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Preference number: 3 (lower is better) Translates to: KGSIKCLMRRAL*ADSLYLEVDVV Trigger: TACCACATCAACTTCAAGGTATAAACTGTCAGCTCATAAGGCTCTTCTCATTAAACATTTAATGCTGCCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046221.8 |
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| 3UTR CCA 72 bp | GATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTaGTTATTACTGTTATCTTCATTATTTGAGAAACGC | + |
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Preference number: 3 (lower is better) Translates to: DQEKKELCLTTA*LLLLSSLFEKR Trigger: GCGTTTCTCAAATAATGAAGATAACAGTAATAACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| 3UTR CAA 72 bp | ATTATCACAGCCAACACAGCAAGATGTTCCTGCTTGTaGATCAAACCATTTCCCCCTTTAACTCTCATAAGC | + |
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Preference number: 4 (lower is better) Translates to: IITANTARCSCL*IKPFPPLTLIS Trigger: GCTTATGAGAGTTAAAGGGGGAAATGGTTTGATCAACAAGCAGGAACATCTTGCTGTGTTGGCTGTGATAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220197.2 |
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| 3UTR CAA 72 bp | GTGATTATCACAGCCAACACAGCAAGATGTTCCTGCTaGTTGATCAAACCATTTCCCCCTTTAACTCTCATA | + |
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Preference number: 4 (lower is better) Translates to: VIITANTARCSC*LIKPFPPLTLI Trigger: TATGAGAGTTAAAGGGGGAAATGGTTTGATCAACAAGCAGGAACATCTTGCTGTGTTGGCTGTGATAATCAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | CCTCACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTGCGTTGCTTCCCCCATGACGAGATTCTGACGTGCTaGCTGAGGCATTTCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: PHKAVLSRKAAVRCFPHDEILTC*LRHFNS Trigger: ACTATTGAAATGCCTCAGCAAGCACGTCAGAATCTC...GTCATGGGGGAAGCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | CTCACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTGCGTTGCTTCCCCCATGACGGAGATTCTGACGTGCTaGCTGAGGCATTTCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: LTKLFSAGRQRCVASPMTEILTC*LRHFNS Trigger: ACTATTGAAATGCCTCAGCAAGCACGTCAGAATCTC...CGTCATGGGGGAAGCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | CGTGACCCTCACAAAGCTGTTCTCAGCCGGAAGGCAGCGGTGCGTTGCTTCCCCAAGATGAGGCAGAAATaGATAAATAGGTTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: RDPHKAVLSRKAAVRCFPKMRQK*INRFWR Trigger: TCTCCAGAACCTATTTATCAATTTCTGCCTCATCTT...GGGGAAGCAACGCACCGCTGCCTTCCGGCTGAGAACAGCTTTGTGAGGGTCACG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000218468.2 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | AGCCAACACAGCAAGATGTTCCTGCTTGTTGATCAAACCCTAGAGAGAGCAGATGAGATTCTGACGTGCTaGCTGAGGCATTTCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: SQHSKMFLLVDQTLERADEILTC*LRHFNS Trigger: ACTATTGAAATGCCTCAGCAAGCACGTCAGAATCTC...ATCTGCTCTCTCTAGGGTTTGATCAACAAGCAGGAACATCTTGCTGTGTTGGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 |
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| CDS-3UTR CAA 90 bp | GCCACTGTAAAGTTTGTTTACAAGATCCAGCAGATGAATACACTGGCTAACAATGAGATTCTGACGTGCTaGCTGAGGCATTTCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: ATVKFVYKIQQMNTLANNEILTC*LRHFNS Trigger: ACTATTGAAATGCCTCAGCAAGCACGTCAGAATCTC...ATTGTTAGCCAGTGTATTCATCTGCTGGATCTTGTAAACAAACTTTACAGTGGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | AGATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGTTATTACTGTTATCGAGATTCTGACGTGCTaGCTGAGGCATTTCAATAGT | + |
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Preference number: 5 (lower is better) Translates to: RSGKERAVSYYSLVITVIEILTC*LRHFNS Trigger: ACTATTGAAATGCCTCAGCAAGCACGTCAGAATCTC...GATAACAGTAATAACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | GCCATGTTGAGGAAATTGGCAGCTACATTATGCACACTTAGCCACTGTAAAGTTAAGATGAGGCAGAAATaGATAAATAGGTTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: AMLRKLAATLCTLSHCKVKMRQK*INRFWR Trigger: TCTCCAGAACCTATTTATCAATTTCTGCCTCATCTT...AACTTTACAGTGGCTAAGTGTGCATAATGTAGCTGCCAATTTCCTCAACATGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | GGAAAGAAATTTATGAGCCATGTTGAGGAAATTGGCAGCTACATTATGCACACTAAGATGAGGCAGAAATaGATAAATAGGTTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: GKKFMSHVEEIGSYIMHTKMRQK*INRFWR Trigger: TCTCCAGAACCTATTTATCAATTTCTGCCTCATCTT...AGTGTGCATAATGTAGCTGCCAATTTCCTCAACATGGCTCATAAATTTCTTTCC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | GCCACTGTAAAGTTTGTTTACAAGATCCAGCAGATGAATACACTGGCTAACAATAAGATGAGGCAGAAATaGATAAATAGGTTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: ATVKFVYKIQQMNTLANNKMRQK*INRFWR Trigger: TCTCCAGAACCTATTTATCAATTTCTGCCTCATCTT...ATTGTTAGCCAGTGTATTCATCTGCTGGATCTTGTAAACAAACTTTACAGTGGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000219491.2 ENSMUST00000219921.2 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | GATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGTTATTACTGTTATCTAAGATGAGGCAGAAATaGATAAATAGGTTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: DQEKKELCLTTAWLLLLSKMRQK*INRFWR Trigger: TCTCCAGAACCTATTTATCAATTTCTGCCTCATCTT...AGATAACAGTAATAACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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| CDS-3UTR CAA 90 bp | AGATCAGGAAAAGAAAGAGCTGTGTCTTACTACAGCTTGGTTATTACTGTTATCAAGATGAGGCAGAAATaGATAAATAGGTTCTGGAGA | + |
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Preference number: 5 (lower is better) Translates to: RSGKERAVSYYSLVITVIKMRQK*INRFWR Trigger: TCTCCAGAACCTATTTATCAATTTCTGCCTCATCTT...GATAACAGTAATAACCAAGCTGTAGTAAGACACAGCTCTTTCTTTTCCTGATCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000046221.8 ENSMUST00000163319.9 ENSMUST00000220197.2 |
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