Pregenerated sensors for PLK1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030867Ensembl transcript IDs: ENSMUST00000033154.8
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCAGGAGCCTACAGTaGAGGCTCAGAGCTAGCAGA | + |
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Preference number: 2 (lower is better) Translates to: TFIQFIQWAERGQGSRCKPRSLQ*RLRASR Trigger: TCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG...TTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCCAGCGGGGCGGCCACTaGGGCACCGGGAACTGCATC | + |
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Preference number: 4 (lower is better) Translates to: PRSLQCRLRASRVKGHQSQRGGH*GTGNCI Trigger: GATGCAGTTCCCGGTGCCCCAGTGGCCGCCCCGCTG...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCCGTAGCGGAGGCGGCTaGCCAGCTCCTTGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PRSLQCRLRASRVKGHQSRSGGG*PAPCSS Trigger: GCTGCTGCAAGGAGCTGGCCAGCCGCCTCCGCTACG...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | CAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGAGAGCAACTCGTGAATGGTaGGGCGGGCAGTGGGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: QCRLRASRVKGHQSEGERATREW*GGQWGL Trigger: CAGACCCCACTGCCCGCCCCACCATTCACGAGTTGC...TCTCTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCCCAGGAGGGACCTCCTaGGACAGAGCTCCAAAACTA | + |
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Preference number: 4 (lower is better) Translates to: PRSLQCRLRASRVKGHQSPGGTS*DRAPKL Trigger: TAGTTTTGGAGCTCTGTCGCAGGAGGTCCCTCCTGG...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | CTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGTCATTGAGCAACTCGTaGATGGTGGGGCGGGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: LQCRLRASRVKGHQSEGESLSNS*MVGRAV Trigger: CACTGCCCGCCCCACCATTCACGAGTTGCTCAATGA...CTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCTGTGCTAGGCTGCGGTaGATTGAGATCTCCATAGAC | + |
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Preference number: 4 (lower is better) Translates to: PRSLQCRLRASRVKGHQSCARLR*IEISID Trigger: GTCTATGGAGATCTCAATTCACCGCAGCCTAGCACA...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | CTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGGCAGTGGGGTCTGTCTaGAGCATCTTCTGGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: LQCRLRASRVKGHQSEGEAVGSV*SIFWMR Trigger: CCTCATCCAGAAGATGCTTCAGACAGACCCCACTGC...CTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | CAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGAGACTCAGGCGGTACGTTTaGAAGTCCCTCTTCTCGTTG | + |
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Preference number: 4 (lower is better) Translates to: QCRLRASRVKGHQSEGERLRRYV*KSLFSL Trigger: CAACGAGAAGAGGGACTTCCAAACGTACCGCCTGAG...TCTCTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | ACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACGCCCCCGTACATACTaGCGCCGGCTGCGTGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: TFIQFIQWAERGQGSRCKRPRTY*RRLRGS Trigger: GGACCCACGCAGCCGGCGGCAGTATGTACGGGGGCG...TTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAATGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCAGCAAGTCACTAAGGTaGCACTCAATGGCCTCATTT | + |
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Preference number: 4 (lower is better) Translates to: PRSLQCRLRASRVKGHQSSKSLR*HSMASF Trigger: AAATGAGGCCATTGAGTGCCACCTTAGTGACTTGCT...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | ACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACGCCTTCCCGGGGTGTaGTGTTGGCCCCTGCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: TFIQFIQWAERGQGSRCKRLPGV*CWPLPS Trigger: TGAAGGCAGGGGCCAACATCACACCCCGGGAAGGCG...TTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCATATTCCACTTTGGTTaGCAAGCCAAAATCCCCTAT | + |
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Preference number: 4 (lower is better) Translates to: PRSLQCRLRASRVKGHQSIFHFG*QAKIPY Trigger: ATAGGGGATTTTGGCTTGGCAACCAAAGTGGAATAT...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | CTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGGCCACTGGGTTGATGTaGTTGGGAATACTGTATTCA | + |
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Preference number: 4 (lower is better) Translates to: LQCRLRASRVKGHQSEGEATGLM*LGILYS Trigger: TGAATACAGTATTCCCAAGCACATCAACCCAGTGGC...CTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | CAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGAGATGTATTCATTTTTCTTaGTCCGGAGGTAGGTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: QCRLRASRVKGHQSEGERCIHFS*SGGRSL Trigger: AAGAGACCTACCTCCGGATCAAGAAAAATGAATACA...TCTCTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCTTGCGGTGCAGGTACTaGCAGCCCAGGACTATCTGT | + |
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Preference number: 4 (lower is better) Translates to: FIQFIQWAERGQGSRCKPLRCRY*QPRTIC Trigger: ACAGATAGTCCTGGGCTGCCAGTACCTGCACCGCAA...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | CTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGAGGATAAGTTTGGTGTaGTCCTGGAAGAAGTTAATC | + |
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Preference number: 4 (lower is better) Translates to: LQCRLRASRVKGHQSEGERISLV*SWKKLI Trigger: GATTAACTTCTTCCAGGACCACACCAAACTTATCCT...CTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | ACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAATGCTGGGGTCCAGGCTaGTGGGAGCGATTGAAAACC | + |
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Preference number: 4 (lower is better) Translates to: TFIQFIQWAERGQGSRCKCWGPG*WERLKT Trigger: GGTTTTCAATCGCTCCCAGCAGCCTGGACCCCAGCA...TTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAATGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | AGCAGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGATCCTCAGCCTCCTCTTaGCGCACCAGCCCGCGCTCC | + |
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Preference number: 4 (lower is better) Translates to: SSPNLIETFIQFIQWAERSSASS*RTSPRS Trigger: GGAGCGCGGGCTGGTGCGGCAAGAGGAGGCTGAGGA...TCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCATCTTCTCCTTCTGGTaGGGCTTGAGCAGCAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: FIQFIQWAERGQGSRCKPIFSFW*GLSSKD Trigger: GTCTTTGCTGCTCAAGCCCCACCAGAAGGAGAAGAT...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCGACATCTTCTCCTTCTaGTGGGGCTTGAGCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: FIQFIQWAERGQGSRCKPDIFSF*WGLSSK Trigger: TTTGCTGCTCAAGCCCCACCAGAAGGAGAAGATGTC...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR GCA 90 bp | AGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGAGGGGGCTGGCCAGCTCCTTaGAGCAGCCATACTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SPNLIETFIQFIQWAERGGWPAP*SSHTPP Trigger: TGGAGGAGTATGGCTGCTGCAAGGAGCTGGCCAGCC...CCCTCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCAGTTTGGTGTGGTCCTaGAAGAAGTTAATCTGCACG | + |
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Preference number: 4 (lower is better) Translates to: FIQFIQWAERGQGSRCKPSLVWS*KKLICT Trigger: CGTGCAGATTAACTTCTTCCAGGACCACACCAAACT...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | AGCAGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGAAGGCGGCCACTGGGTTaGTGTGCTTGGGAATACTGT | + |
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Preference number: 4 (lower is better) Translates to: SSPNLIETFIQFIQWAERRRPLG*CAWEYC Trigger: ACAGTATTCCCAAGCACATCAACCCAGTGGCCGCCT...TCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR TCA 90 bp | AGCAGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGACTGTTGTCACACAGCTaGTACCCAAGGCCATACTTG | + |
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Preference number: 4 (lower is better) Translates to: SSPNLIETFIQFIQWAERLLSHS*YPRPYL Trigger: CAAGTATGGCCTTGGGTATCAGCTGTGTGACAACAG...TCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACTGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CCA 90 bp | AGCAGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGACTTCATATTCCACTTTaGTTGCCAAGCCAAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: SSPNLIETFIQFIQWAERLHIPL*LPSQNP Trigger: GGGATTTTGGCTTGGCAACCAAAGTGGAATATGAAG...TCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | CAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGAGAGAGGCCTTGAGGCGGTaGCTGGCGGAGCGCGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: QCRLRASRVKGHQSEGEREALRR*LAEREL Trigger: GAGCTCGCGCTCCGCCAGCAACCGCCTCAAGGCCTC...TCTCTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | CTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGAAGGAGAGCGGCTGGCCAGCTCCTaGCAGCAGCCATACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LQCRLRASRVKGHQSEGERLASS*QQPYSS Trigger: GGAGGAGTATGGCTGCTGCAAGGAGCTGGCCAGCCG...CTCTCCTTCGGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | CCCAGGAGCCTACAGTGCAGGCTCAGAGCTAGCAGAGTGAAGGGGCACCAGTCCGGGCACAGGATAAGTTaGGTGTGGTCCTGGAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: PRSLQCRLRASRVKGHQSGHRIS*VWSWKK Trigger: CTTCTTCCAGGACCACACCAAACTTATCCTGTGCCC...GGACTGGTGCCCCTTCACTCTGCTAGCTCTGAGCCTGCACTGTAGGCTCCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCTCCTTCTGGTGGGGCTaGAGCAGCAAAGACTTAGGC | + |
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Preference number: 5 (lower is better) Translates to: FIQFIQWAERGQGSRCKPSFWWG*SSKDLG Trigger: GCCTAAGTCTTTGCTGCTCAAGCCCCACCAGAAGGA...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | AGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCCGCGCTCCGAGGGCTaGGAGGCGTTGACACTGGTC | + |
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Preference number: 5 (lower is better) Translates to: SPNLIETFIQFIQWAERGPRSEG*EALTLV Trigger: GACCAGTGTCAACGCCTCCAAGCCCTCGGAGCGCGG...CCCTCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCGCTCAGGCGGTACGTTaGGAAGTCCCTCTTCTCGTT | + |
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Preference number: 5 (lower is better) Translates to: FIQFIQWAERGQGSRCKPAQAVR*EVPLLV Trigger: AACGAGAAGAGGGACTTCCAAACGTACCGCCTGAGC...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | ACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCTTTATTGAGGACTTaGAGAGGTTTCCTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: TFIQFIQWAERGQGSRCKPLLRT*RGFLLL Trigger: CAGCAGCAGGAAACCTCTCAAAGTCCTCAATAAAGG...TTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | TTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAACCCTTCTCCACACCTTTATaGAGGACTTTGAGAGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: FIQFIQWAERGQGSRCKPFSTPL*RTLRGF Trigger: GAAACCTCTCAAAGTCCTCAATAAAGGTGTGGAGAA...GGGTTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | ACATTTATACAATTCATACAGTGGGCTGAGCGAGGGCAGGGAAGCAGATGTAAATTCTTCATCAAGGAATaGGGATGGGAGCTCACAGTG | + |
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Preference number: 5 (lower is better) Translates to: TFIQFIQWAERGQGSRCKFFIKE*GWELTV Trigger: CACTGTGAGCTCCCATCCCAATTCCTTGATGAAGAA...TTTACATCTGCTTCCCTGCCCTCGCTCAGCCCACTGTATGAATTGTATAAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS-3UTR CAA 90 bp | AGCAGTCCCAATTTAATAGAAACATTTATACAATTCATACAGTGGGCTGAGCGAAAACTGTGTCCCTTCTaGCTCAGCACCTCAGGAGCT | + |
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Preference number: 5 (lower is better) Translates to: SSPNLIETFIQFIQWAERKLCPF*LSTSGA Trigger: AGCTCCTGAGGTGCTGAGCAAGAAGGGACACAGTTT...TCGCTCAGCCCACTGTATGAATTGTATAAATGTTTCTATTAAATTGGGACTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS CAA 72 bp | GCAGCCATACTCCTCCAGGAGGCTCAGGCGGTACGTTaGGAAGTCCCTCTTCTCGTTGATGTAGGTCACCGC | + |
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Preference number: 6 (lower is better) Translates to: AAILLQEAQAVR*EVPLLVDVGHR Trigger: GCGGTGACCTACATCAACGAGAAGAGGGACTTCCAAACGTACCGCCTGAGCCTCCTGGAGGAGTATGGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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| CDS CCA 72 bp | TTGACACTGGTCAGCTGCTGTAGCAAGTCACTAAGGTaGCACTCAATGGCCTCATTTGTCTCCCGGACCACC | + |
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Preference number: 6 (lower is better) Translates to: LTLVSCCSKSLR*HSMASFVSRTT Trigger: GGTGGTCCGGGAGACAAATGAGGCCATTGAGTGCCACCTTAGTGACTTGCTACAGCAGCTGACCAGTGTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033154.8 |
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