RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLIN4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000002831

Ensembl transcript IDs: ENSMUST00000002908.8, ENSMUST00000190703.7, ENSMUST00000238734.2

Found 426 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAACCCAACAGAAATCCATCACTAGCTGTGCAGGGACCCCCAGGTaGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGG +
Preference number: 1 (lower is better)
Translates to: TTQQKSITSCAGTPR*DQQSASGAARPLGW
Trigger: CCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGGATTTCTGTTGGGTTGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 90 bp TCTGCTCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTaGTCACAGCATGGTCCCTGGGACCCCACCCACCCAGCCCTCAGG +
Preference number: 1 (lower is better)
Translates to: SAPVQSRALGKYSQL*SQHGPWDPTHPALR
Trigger: CCTGAGGGCTGGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGAGCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR GCA 90 bp TGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAAGGCTCCTTaGCGTCTCTATCATGGCATTCCTTGGCCACAGCTGGCCCAGGCC +
Preference number: 1 (lower is better)
Translates to: CHPDADMAEGQGKAP*RLYHGIPWPQLAQA
Trigger: GGCCTGGGCCAGCTGTGGCCAAGGAATGCCATGATAGAGACGGCAAGGAGCCTTTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 90 bp CAGTGGGGACGCGTGATGCTTCTTTACTCTGTGTGGGGGTCTGTGTaGCCTGTATCTGAACAGACTTGGTGGCTAGTTTGGAGGGAAGGG +
Preference number: 1 (lower is better)
Translates to: QWGRVMLLYSVWGSV*PVSEQTWWLVWREG
Trigger: CCCTTCCCTCCAAACTAGCCACCAAGTCTGTTCAGATACAGGCCACACAGACCCCCACACAGAGTAAAGAAGCATCACGCGTCCCCACTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 90 bp CAGTGTTTGCCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATaGCAGAAGGTCAGGGAAAGGCTCCTTGCCGTCTCTATCATGGCA +
Preference number: 1 (lower is better)
Translates to: QCLPVAGSSVTLMLT*QKVRERLLAVSIMA
Trigger: TGCCATGATAGAGACGGCAAGGAGCCTTTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGGCAAACACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 90 bp GTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCTGCAGGCTCTaGGCCCAGTGTTTGCCAGTGGCTGGGTCTAGTGTCACCCTGATG +
Preference number: 1 (lower is better)
Translates to: VMRLMPSVGKLSCRL*AQCLPVAGSSVTLM
Trigger: CATCAGGGTGACACTAGACCCAGCCACTGGCAAACACTGGGCTCAGAGCCTGCAGCTAAGCTTTCCAACAGATGGCATGAGCCTCATTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 90 bp AATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTaGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACC +
Preference number: 1 (lower is better)
Translates to: NSLSEDLLLLFNPEL*GSTASCGHSMVPGT
Trigger: GGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 90 bp CGTGATGCTTCTTTACTCTGTGTGGGGGTCTGTGTGGCCTGTATCTaGACAGACTTGGTGGCTAGTTTGGAGGGAAGGGATCATTGGTTC +
Preference number: 1 (lower is better)
Translates to: RDASLLCVGVCVACI*TDLVASLEGRDHWF
Trigger: GAACCAATGATCCCTTCCCTCCAAACTAGCCACCAAGTCTGTTCAGATACAGGCCACACAGACCCCCACACAGAGTAAAGAAGCATCACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 90 bp ACTCAGCAGTGCTGGGCCTGTCAGATCAACCCTGTTTCCATGCAGTaGTATATATATGACTCTCGTTTTCTCAGCAGAGCAGGCCTGAGT +
Preference number: 1 (lower is better)
Translates to: TQQCWACQINPVSMQ*YIYDSRFLSRAGLS
Trigger: ACTCAGGCCTGCTCTGCTGAGAAAACGAGAGTCATATATATATCACTGCATGGAAACAGGGTTGATCTGACAGGCCCAGCACTGCTGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 90 bp TGCAGTGATATATATATGACTCTCGTTTTCTCAGCAGAGCAGGCCTaGGTCAGGCCTATAGCAGCCTGGAATGTAATTGTGTGGTTTTGT +
Preference number: 1 (lower is better)
Translates to: CSDIYMTLVFSAEQA*VRPIAAWNVIVWFC
Trigger: ACAAAACCACACAATTACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGAGTCATATATATATCACTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGGGTTCAGGGAGGGCTaGGCTGTGGCCTTGGCCTGG +
Preference number: 2 (lower is better)
Translates to: SSASGLECCSPHHPNPLSGFREG*AVALAW
Trigger: CCAGGCCAAGGCCACAGCCCAGCCCTCCCTGAACCC...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR TCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGCCTTGGCCTGGTGGTaGGTCAGTGCCTTGTGCCCC +
Preference number: 2 (lower is better)
Translates to: SSASGLECCSPHHPNPLSALAWW*VSALCP
Trigger: GGGGCACAAGGCACTGACTCACCACCAGGCCAAGGC...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGCTGGGCTGTGGCCTTaGCCTGGTGGTGAGTCAGTG +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQAGLWP*PGGESV
Trigger: CACTGACTCACCACCAGGCCAAGGCCACAGCCCAGC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGCTGGGCTGTGGCCTTaGCCTGGTGGTGAGTCAGTG +
Preference number: 2 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGAGLWP*PGGESV
Trigger: CACTGACTCACCACCAGGCCAAGGCCACAGCCCAGC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGCTGGTGGTGAGTCAGTaGCTTGTGCCCCAGCATCTT +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQLVVSQ*LVPQHL
Trigger: AAGATGCTGGGGCACAAGGCACTGACTCACCACCAG...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTCTGGGCTGGAGTGTTaGAGTCCACACCACCCCAAC +
Preference number: 2 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGSGLEC*SPHHPN
Trigger: GTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGCCAAGGATAGAAAGCTaGCCAGTGGGGACGCGTGAT +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQPRIES*PVGTRD
Trigger: ATCACGCGTCCCCACTGGCCAGCTTTCTATCCTTGG...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTTCCTTGGCCACAGCTaGCCCAGGCCTAAAGCTTGT +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQFLGHS*PRPKAC
Trigger: ACAAGCTTTAGGCCTGGGCCAGCTGTGGCCAAGGAA...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR TCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGCCTTGGCCTGGTGGTaGGTCAGTGCCTTGTGCCCC +
Preference number: 2 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREALAWW*VSALCP
Trigger: GGGGCACAAGGCACTGACTCACCACCAGGCCAAGGC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGCACGAGTTGGGTACATaGCTCCTGGTTGTATCCACC +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQHELGT*LLVVST
Trigger: GGTGGATACAACCAGGAGGCATGTACCCAACTCGTG...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAACAGCTACTCAGCAGTaGTGGGCCTGTCAGATCAAC +
Preference number: 2 (lower is better)
Translates to: SSASGLECCSPHHPNPLSTATQQ*WACQIN
Trigger: GTTGATCTGACAGGCCCAGCACTGCTGAGTAGCTGT...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGCACGAGTTGGGTACATaGCTCCTGGTTGTATCCACC +
Preference number: 2 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGHELGT*LLVVST
Trigger: GGTGGATACAACCAGGAGGCATGTACCCAACTCGTG...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCTGTTTGCTTCTATCTTaGGTGCGTAGGGCAAGGGAG +
Preference number: 2 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLCLLLS*VRRARE
Trigger: CTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACA...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGCCCCAGCATCTTGTTTaGTTCTATCTTGGGTGCGTA +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQPQHLV*FYLGCV
Trigger: TACGCACCCAAGATAGAAGCAAACAAGATGCTGGGG...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATCACAGCATGGTCCCTaGGACCCCACCCACCCAGCC +
Preference number: 2 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQSQHGP*DPTHPA
Trigger: GGCTGGGTGGGTGGGGTCCCAGGGACCATGCTGTGA...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTTCACAGCATGGTCCCTaGGACCCCACCCACCCAGCC +
Preference number: 2 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECSQHGP*DPTHPA
Trigger: GGCTGGGTGGGTGGGGTCCCAGGGACCATGCTGTGA...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGGCTGTGGTCACAGCATaGTCCCTGGGACCCCACCCA +
Preference number: 2 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQAVVTA*SLGPHP
Trigger: TGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGC...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCACTTCTTTACTCTGTGTaGGGGTCTGTGTGGCCTGTA +
Preference number: 2 (lower is better)
Translates to: SSASGLECCSPHHPNPLSLLYSV*GSVWPV
Trigger: TACAGGCCACACAGACCCCCACACAGAGTAAAGAAG...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCATGTTTGCTTCTATCTTaGGTGCGTAGGGCAAGGGAG +
Preference number: 2 (lower is better)
Translates to: SSASGLECCSPHHPNPLSCLLLS*VRRARE
Trigger: CTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACA...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGCTGGGCTGTGGCCTTaGCCTGGTGGTGAGTCAGTG +
Preference number: 2 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRAGLWP*PGGESV
Trigger: CACTGACTCACCACCAGGCCAAGGCCACAGCCCAGC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTTGCCGTCTCTATCATaGCATTCCTTGGCCACAGCT +
Preference number: 2 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGLPSLS*HSLATA
Trigger: AGCTGTGGCCAAGGAATGCCATGATAGAGACGGCAA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGGCTCGGCCTCTGGGCTaGAGTGTTGCAGTCCACACC +
Preference number: 2 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQARPLG*SVAVHT
Trigger: GGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGC...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTTTCCGAGGATCTTCTaGTCCTGTTCAATCCAGAGC +
Preference number: 2 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGFPRIF*SCSIQS
Trigger: GCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCACCCCAGCATCTTGTTTaGTTCTATCTTGGGTGCGTA +
Preference number: 2 (lower is better)
Translates to: SSASGLECCSPHHPNPLSPQHLV*FYLGCV
Trigger: TACGCACCCAAGATAGAAGCAAACAAGATGCTGGGG...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGAGCAGGAGCTGTGGCTaGTTTCAAATTCACTTTCCG +
Preference number: 2 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGSRSCG*FQIHFP
Trigger: CGGAAAGTGAATTTGAAACCAGCCACAGCTCCTGCT...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAATATCATGGCATTCCTTaGCCACAGCTGGCCCAGGCC +
Preference number: 2 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREYHGIP*PQLAQA
Trigger: GGCCTGGGCCAGCTGTGGCCAAGGAATGCCATGATA...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 90 bp CCTTGGCCTGGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTaGCTTCTATCTTGGGTGCGTAGGGCAAGGGAGAGGAGCCATCAA +
Preference number: 2 (lower is better)
Translates to: PWPGGESVPCAPASC*LLSWVRRARERSHQ
Trigger: TTGATGGCTCCTCTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACCAGGCCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR TCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACTTAGCTGCAGGCTCTaGGCCCAGTGTTTGCCAGTG +
Preference number: 2 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRLSCRL*AQCLPV
Trigger: CACTGGCAAACACTGGGCTCAGAGCCTGCAGCTAAG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAAAGTACAGCCAGCTGTaGTCACAGCATGGTCCCTGG +
Preference number: 2 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREKYSQL*SQHGPW
Trigger: CCAGGGACCATGCTGTGACCACAGCTGGCTGTACTT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCGAGGGAAGGGATCATTaGTTCTTAGAAATAGCAGGA +
Preference number: 2 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLEGRDH*FLEIAG
Trigger: TCCTGCTATTTCTAAGAACCAATGATCCCTTCCCTC...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCCAAGGATAGAAAGCTaGCCAGTGGGGACGCGTGAT +
Preference number: 2 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQPRIES*PVGTRD
Trigger: ATCACGCGTCCCCACTGGCCAGCTTTCTATCCTTGG...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACCAAGGATAGAAAGCTaGCCAGTGGGGACGCGTGAT +
Preference number: 2 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQPRIES*PVGTRD
Trigger: ATCACGCGTCCCCACTGGCCAGCTTTCTATCCTTGG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTGGAATGTAATTGTGTaGTTTTGTGCAGCATTTCTC +
Preference number: 2 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQWNVIV*FCAAFL
Trigger: GAGAAATGCTGCACAAAACCACACAATTACATTCCA...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGACATCAGCATGGCTGTaGATTCTAGTCCCAGGGAAC +
Preference number: 2 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQTSAWL*ILVPGN
Trigger: GTTCCCTGGGACTAGAATGCACAGCCATGCTGATGT...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAAGAGGAGCCATCAACTaGCCATATCCCCATTCAGTA +
Preference number: 2 (lower is better)
Translates to: PVAGSSVTLMLTWQKVRERGAIN*PYPHSV
Trigger: TACTGAATGGGGATATGGGCAGTTGATGGCTCCTCT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAAGCAGGAGCTGTGGCTaGTTTCAAATTCACTTTCCG +
Preference number: 2 (lower is better)
Translates to: PVAGSSVTLMLTWQKVRESRSCG*FQIHFP
Trigger: CGGAAAGTGAATTTGAAACCAGCCACAGCTCCTGCT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACTTCTTTACTCTGTGTaGGGGTCTGTGTGGCCTGTA +
Preference number: 2 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRLLYSV*GSVWPV
Trigger: TACAGGCCACACAGACCCCCACACAGAGTAAAGAAG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 90 bp AAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTaGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGAC +
Preference number: 2 (lower is better)
Translates to: KFTFRGSSAPVQSRA*GKYSQLWSQHGPWD
Trigger: GTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATCTTCAACCCTAGGCTaGAGGCCATGTTCCTGTACA +
Preference number: 2 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQSSTLG*RPCSCT
Trigger: TGTACAGGAACATGGCCTGCAGCCTAGGGTTGAAGA...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGAGAGGAGCCATCAACTaGCCATATCCCCATTCAGTA +
Preference number: 2 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQRGAIN*PYPHSV
Trigger: TACTGAATGGGGATATGGGCAGTTGATGGCTCCTCT...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGCTGTGGTCACAGCATaGTCCCTGGGACCCCACCCA +
Preference number: 2 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGAVVTA*SLGPHP
Trigger: TGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCATTTCCGAGGATCTTCTaGTCCTGTTCAATCCAGAGC +
Preference number: 2 (lower is better)
Translates to: GWSDTTRREELWALERLSFPRIF*SCSIQS
Trigger: GCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAA...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGAGGGAAGGGATCATTaGTTCTTAGAAATAGCAGGA +
Preference number: 2 (lower is better)
Translates to: LIQGRSHTHRLAELLVQREGRDH*FLEIAG
Trigger: TCCTGCTATTTCTAAGAACCAATGATCCCTTCCCTC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACCGTAGAGAAGAGCTATaGGCCCTGGAAAGACTGTCA +
Preference number: 2 (lower is better)
Translates to: SWVHASWLYPPASIATNNRREEL*ALERLS
Trigger: TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACG...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACTGTTTGCTTCTATCTTaGGTGCGTAGGGCAAGGGAG +
Preference number: 2 (lower is better)
Translates to: SWVHASWLYPPASIATNNCLLLS*VRRARE
Trigger: CTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACA...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR TCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGCAGTGATATATATATaGCTCTCGTTTTCTCAGCAG +
Preference number: 2 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRAVIYI*LSFSQQ
Trigger: CTGCTGAGAAAACGAGAGTCATATATATATCACTGC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR TCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGGCAGTGATATATATATaGCTCTCGTTTTCTCAGCAG +
Preference number: 2 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQAVIYI*LSFSQQ
Trigger: CTGCTGAGAAAACGAGAGTCATATATATATCACTGC...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACTTTCCGAGGATCTTCTaGTCCTGTTCAATCCAGAGC +
Preference number: 2 (lower is better)
Translates to: SWVHASWLYPPASIATNNFPRIF*SCSIQS
Trigger: GCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAA...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGATGGAATGTAATTGTGTaGTTTTGTGCAGCATTTCTC +
Preference number: 2 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRWNVIV*FCAAFL
Trigger: GAGAAATGCTGCACAAAACCACACAATTACATTCCA...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCACATCAGCATGGCTGTaGATTCTAGTCCCAGGGAAC +
Preference number: 2 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSTSAWL*ILVPGN
Trigger: GTTCCCTGGGACTAGAATGCACAGCCATGCTGATGT...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGAGAGGAGCCATCAACTaGCCATATCCCCATTCAGTA +
Preference number: 2 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWRGAIN*PYPHSV
Trigger: TACTGAATGGGGATATGGGCAGTTGATGGCTCCTCT...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR GCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGTCAACCCTGTTTCCATaGAGTGATATATATATGACT +
Preference number: 2 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWSTLFP*SDIYMT
Trigger: AGTCATATATATATCACTGCATGGAAACAGGGTTGA...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTaGGCTGGAGTGTTGCAGTCCACACCACCCCAACCC +
Preference number: 3 (lower is better)
Translates to: GTSKVPLGQLGL*AGVLQSTPPQP
Trigger: GGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp TGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTaGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGT +
Preference number: 3 (lower is better)
Translates to: CRDPQVGPAKCL*GSSASGLECCS
Trigger: ACTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp CAGAAATCCATCACTAGCTGTGCAGGGACCCCCAGGTaGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCT +
Preference number: 3 (lower is better)
Translates to: QKSITSCAGTPR*DQQSASGAARP
Trigger: AGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGGATTTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGAAAGGGGCTGGAAGATaGGGGTCACTAGTACTGCTG +
Preference number: 3 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQKGAGR*GSLVLL
Trigger: CAGCAGTACTAGTGACCCCAATCTTCCAGCCCCTTT...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp GTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTaGTCACAGCATGGTCCCTGGGACCCCACCCACCCA +
Preference number: 3 (lower is better)
Translates to: VQSRALGKYSQL*SQHGPWDPTHP
Trigger: TGGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCTTGTGCCCCAGCATCTaGTTTGCTTCTATCTTGGGT +
Preference number: 3 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLLCPSI*FASILG
Trigger: ACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAA...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGGAGGGAAGGGATCATaGGTTCTTAGAAATAGCAGG +
Preference number: 3 (lower is better)
Translates to: SSASGLECCSPHHPNPLSGGKGS*VLRNSR
Trigger: CCTGCTATTTCTAAGAACCAATGATCCCTTCCCTCC...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTTGTGCCCCAGCATCTaGTTTGCTTCTATCTTGGGT +
Preference number: 3 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGLCPSI*FASILG
Trigger: ACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACTCTGGGCTGGAGTGTaGCAGTCCACACCACCCCAA +
Preference number: 3 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRLWAGV*QSTPPQ
Trigger: TTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp GTGCTGGCTACCATGAGCAGTATAGGGAGCCAGACCTaGTTCAGGGCAGGTCTCATACCCACAGGCTGGCAG +
Preference number: 3 (lower is better)
Translates to: VLATMSSIGSQT*FRAGLIPTGWQ
Trigger: CTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTCTGGCTCCCTATACTGCTCATGGTAGCCAGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR GCA 72 bp GGCCATGTTCCTGTACAGGCCACAGCTACTCAGCAGTaGTGGGCCTGTCAGATCAACCCTGTTTCCATGCAG +
Preference number: 3 (lower is better)
Translates to: GHVPVQATATQQ*WACQINPVSMQ
Trigger: CTGCATGGAAACAGGGTTGATCTGACAGGCCCAGCACTGCTGAGTAGCTGTGGCCTGTACAGGAACATGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp AGAAGGTCAGGGAAAGGCTCCTTGCCGTCTCTATCATaGCATTCCTTGGCCACAGCTGGCCCAGGCCTAAAG +
Preference number: 3 (lower is better)
Translates to: RRSGKGSLPSLS*HSLATAGPGLK
Trigger: CTTTAGGCCTGGGCCAGCTGTGGCCAAGGAATGCCATGATAGAGACGGCAAGGAGCCTTTCCCTGACCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp TCCCCACTCTTCTGTGTTCCCAGTGGGCTCACGAGTTaGGTACATGCCTCCTGGTTGTATCCACCTGCCTCA +
Preference number: 3 (lower is better)
Translates to: SPLFCVPSGLTS*VHASWLYPPAS
Trigger: TGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTGAGCCCACTGGGAACACAGAAGAGTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp CTCATGCCATCTGTTGGAAAGCTTAGCTGCAGGCTCTaGGCCCAGTGTTTGCCAGTGGCTGGGTCTAGTGTC +
Preference number: 3 (lower is better)
Translates to: LMPSVGKLSCRL*AQCLPVAGSSV
Trigger: GACACTAGACCCAGCCACTGGCAAACACTGGGCTCAGAGCCTGCAGCTAAGCTTTCCAACAGATGGCATGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR GCA 72 bp GTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTaGTTCTATCTTGGGTGCGTAGGGCAAGGGAGAGGA +
Preference number: 3 (lower is better)
Translates to: VVSQCLVPQHLV*FYLGCVGQGRG
Trigger: TCCTCTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp GTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTaGGTGCGTAGGGCAAGGGAGAGGAGCCATCAACTG +
Preference number: 3 (lower is better)
Translates to: VPCAPASCLLLS*VRRARERSHQL
Trigger: CAGTTGATGGCTCCTCTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR GCA 72 bp CTTGGGTGCGTAGGGCAAGGGAGAGGAGCCATCAACTaGCCATATCCCCATTCAGTACAGTCTTCAACCCTA +
Preference number: 3 (lower is better)
Translates to: LGCVGQGRGAIN*PYPHSVQSSTL
Trigger: TAGGGTTGAAGACTGTACTGAATGGGGATATGGGCAGTTGATGGCTCCTCTCCCTTGCCCTACGCACCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp TCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTaGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTC +
Preference number: 3 (lower is better)
Translates to: SEDLLLLFNPEL*GSTASCGHSMV
Trigger: GACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp GTTCCCAGTGGGCTCACGAGTTGGGTACATGCCTCCTaGTTGTATCCACCTGCCTCAATAGCCACCAATAAC +
Preference number: 3 (lower is better)
Translates to: VPSGLTSWVHAS*LYPPASIATNN
Trigger: GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTGAGCCCACTGGGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGGAGGGAAGGGATCATaGGTTCTTAGAAATAGCAGG +
Preference number: 3 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREGGKGS*VLRNSR
Trigger: CCTGCTATTTCTAAGAACCAATGATCCCTTCCCTCC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAAAAAGGGGCTGGAAGATaGGGGTCACTAGTACTGCTG +
Preference number: 3 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQKGAGR*GSLVLL
Trigger: CAGCAGTACTAGTGACCCCAATCTTCCAGCCCCTTT...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp CGCGTGATGCTTCTTTACTCTGTGTGGGGGTCTGTGTaGCCTGTATCTGAACAGACTTGGTGGCTAGTTTGG +
Preference number: 3 (lower is better)
Translates to: RVMLLYSVWGSV*PVSEQTWWLVW
Trigger: CCAAACTAGCCACCAAGTCTGTTCAGATACAGGCCACACAGACCCCCACACAGAGTAAAGAAGCATCACGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR-3UTR CAA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGTTGTGCCCCAGCATCTaGTTTGCTTCTATCTTGGGT +
Preference number: 3 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQLCPSI*FASILG
Trigger: ACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAA...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp TCTTTACTCTGTGTGGGGGTCTGTGTGGCCTGTATCTaGACAGACTTGGTGGCTAGTTTGGAGGGAAGGGAT +
Preference number: 3 (lower is better)
Translates to: SLLCVGVCVACI*TDLVASLEGRD
Trigger: ATCCCTTCCCTCCAAACTAGCCACCAAGTCTGTTCAGATACAGGCCACACAGACCCCCACACAGAGTAAAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR GCA 72 bp TGTGGCTGGTTTCAAATTCACTTTCCGAGGATCTTCTaGTCCTGTTCAATCCAGAGCTTTGGGGAAGTACAG +
Preference number: 3 (lower is better)
Translates to: CGWFQIHFPRIF*SCSIQSFGEVQ
Trigger: CTGTACTTCCCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAACCAGCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp ATATATATGACTCTCGTTTTCTCAGCAGAGCAGGCCTaGGTCAGGCCTATAGCAGCCTGGAATGTAATTGTG +
Preference number: 3 (lower is better)
Translates to: IYMTLVFSAEQA*VRPIAAWNVIV
Trigger: CACAATTACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGAGTCATATATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp TGCTGGGCCTGTCAGATCAACCCTGTTTCCATGCAGTaGTATATATATGACTCTCGTTTTCTCAGCAGAGCA +
Preference number: 3 (lower is better)
Translates to: CWACQINPVSMQ*YIYDSRFLSRA
Trigger: TGCTCTGCTGAGAAAACGAGAGTCATATATATATCACTGCATGGAAACAGGGTTGATCTGACAGGCCCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp TATCCACCTGCCTCAATAGCCACCAATAACTTGGCATaGTGTAATGAGGCTCATGCCATCTGTTGGAAAGCT +
Preference number: 3 (lower is better)
Translates to: YPPASIATNNLA*CNEAHAICWKA
Trigger: AGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGGTGGCTATTGAGGCAGGTGGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CCA 72 bp GGATCATTGGTTCTTAGAAATAGCAGGAGCTGTGGCTaGTTTCAAATTCACTTTCCGAGGATCTTCTGCTCC +
Preference number: 3 (lower is better)
Translates to: GSLVLRNSRSCG*FQIHFPRIFCS
Trigger: GGAGCAGAAGATCCTCGGAAAGTGAATTTGAAACCAGCCACAGCTCCTGCTATTTCTAAGAACCAATGATCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR TCA 72 bp TCAGATCAACCCTGTTTCCATGCAGTGATATATATATaGCTCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCA +
Preference number: 3 (lower is better)
Translates to: SDQPCFHAVIYI*LSFSQQSRPES
Trigger: TGACTCAGGCCTGCTCTGCTGAGAAAACGAGAGTCATATATATATCACTGCATGGAAACAGGGTTGATCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCAGGCTGTGCCGTGCCTaGCCTGCCTGCTGCTGCACC +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPRLCRA*PACCCT
Trigger: GGTGCAGCAGCAGGCAGGGCAGGCACGGCACAGCCT...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCGCAGAGGCTGTGCCGTaGCTGCCCTGCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPAEAVP*LPCLLL
Trigger: CAGCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGC...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCGGTTCCGGGCAGAGCTaGAGCCAGGCAGGGACCCAA +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPGSGQS*SQAGTQ
Trigger: TTGGGTCCCTGCCTGGCTTCAGCTCTGCCCGGAACC...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGCAGAGGCTGTGCCGTaGCTGCCCTGCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SSASGLECCSPHHPNPLSAEAVP*LPCLLL
Trigger: CAGCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGC...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGCTGATGGGCGAGGGTaGACAGCCTGTCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQADGRG*TACPEP
Trigger: TGGCTCAGGACAGGCTGTGCACCCTCGCCCATCAGC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCGCTGATGGGCGAGGGTaGACAGCCTGTCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLADGRG*TACPEP
Trigger: TGGCTCAGGACAGGCTGTGCACCCTCGCCCATCAGC...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTGTTCGAAGGCCCGCTaGCGGAAGCTAGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGCSKAR*RKLGAR
Trigger: CCTGGCCCCTAGCTTCCGCCAGCGGGCCTTCGAACA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCACCTCTGGCAGGCCCTaGAGGCTGGTTACTAGGCTG +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPTSGRP*RLVTRL
Trigger: CAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGT...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCGCCAGCTGCTCTGTCTaGAGCTCACTACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLASCSV*SSLPAS
Trigger: GGAGGCAGGTAGTGAGCTGCAGACAGAGCAGCTGGC...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCGGTTCCGGGCAGAGCTaGAGCCAGGCAGGGACCCAA +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPGSGQS*SQAGTQ
Trigger: TTGGGTCCCTGCCTGGCTTCAGCTCTGCCCGGAACC...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGTATCCAGGCCTCCTTaGGCAGCCCCTTTGACCACA +
Preference number: 4 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQVSRPP*AAPLTT
Trigger: TGTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATAC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCGTGCACAGCCTGTCCTaGGCCACGGAAGCCCGCATC +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPVHSLS*ATEARI
Trigger: GATGCGGGCTTCCGTGGCTCAGGACAGGCTGTGCAC...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGACCTCTGGCAGGCCCTaGAGGCTGGTTACTAGGCTG +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGTSGRP*RLVTRL
Trigger: CAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGT...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGCCTGCCCTGCCTGCTaGTGCACCTCTGGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREACPAC*CTSGRP
Trigger: GGGCCTGCCAGAGGTGCAGCAGCAGGCAGGGCAGGC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCCAAGGCCATACAGCTTaGAGAGGCTGTGCCGTGCCT +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLQGHTA*RGCAVP
Trigger: AGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTG...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGCAAGGCCATACAGCTTaGAGAGGCTGTGCCGTGCCT +
Preference number: 4 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQQGHTA*RGCAVP
Trigger: AGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTG...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGCCAGCTGCTCTGTCTaGAGCTCACTACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: SSASGLECCSPHHPNPLSASCSV*SSLPAS
Trigger: GGAGGCAGGTAGTGAGCTGCAGACAGAGCAGCTGGC...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGAGCACCTCCAGGCCCTaGCAGGCCTCAACAACACCA +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGSTSRP*QASTTP
Trigger: TGGTGTTGTTGAGGCCTGGCAGGGCCTGGAGGTGCT...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCGTGCAGCAAAGCCTGTaGCAGCCAGCTGACCACACT +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLVQQSL*QPADHT
Trigger: AGTGTGGTCAGCTGGCTGCCACAGGCTTTGCTGCAC...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCGTATCCAGGCCTCCTTaGGCAGCCCCTTTGACCACA +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTVSRPP*AAPLTT
Trigger: TGTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATAC...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCCAGCTCTGGGCTCTGTaGCATGCCCCAAGCCATATT +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLQLWAL*HAPSHI
Trigger: AATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTG...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCAGCTCTGGGCTCTGTaGCATGCCCCAAGCCATATT +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPQLWAL*HAPSHI
Trigger: AATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTG...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGTGCCGTGCCTGCCCTaGCTGCTGCTGCACCTCTGG +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREVPCLP*LLLHLW
Trigger: CCAGAGGTGCAGCAGCAGGCAGGGCAGGCACGGCAC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAAGGCTGTGCCGTGCCTaGCCTGCCTGCTGCTGCACC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVRERLCRA*PACCCT
Trigger: GGTGCAGCAGCAGGCAGGGCAGGCACGGCACAGCCT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGTGGAGGGTTCTGCTaGAGCTTCTCAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLSGGFC*SFSSST
Trigger: GGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACT...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCGTCATGTCTGTCATCTaGAAGGCCTCCTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLVMSVI*KASWSW
Trigger: CCAGCTCCAGGAGGCCTTCCAGATGACAGACATGAC...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCAGTGGAGGTGGAGCTGTaGGTGTGGGACACCAGGTTC +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPVEVEL*VWDTRF
Trigger: GAACCTGGTGTCCCACACTCACAGCTCCACCTCCAC...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCGAACTCGGAACTGTGTaGACACCTGTGTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPELGTV*TPVWMA
Trigger: TGCCATCCACACAGGTGTTCACACAGTTCCGAGTTC...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGTGCACAGCCTGTCCTaGGCCACGGAAGCCCGCATC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREVHSLS*ATEARI
Trigger: GATGCGGGCTTCCGTGGCTCAGGACAGGCTGTGCAC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCTCTGGCAGGCCCTaGAGGCTGGTTACTAGGCTG +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPTSGRP*RLVTRL
Trigger: CAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGT...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGCCTGCCCTGCCTGCTaGTGCACCTCTGGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWACPAC*CTSGRP
Trigger: GGGCCTGCCAGAGGTGCAGCAGCAGGCAGGGCAGGC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGGCCTGCCCTGCCTGCTaGTGCACCTCTGGCAGGCCC +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVACPAC*CTSGRP
Trigger: GGGCCTGCCAGAGGTGCAGCAGCAGGCAGGGCAGGC...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCTCAGCACAGTCTTGCTaGTGCCAAGACCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPSAQSC*CQDPSV
Trigger: CACAGATGGGTCTTGGCACCAGCAAGACTGTGCTGA...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGCCAGCACAGAAGACTaGGTGTCTCTGGTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGASTED*VSLVVS
Trigger: AGACACCACCAGAGACACCCAGTCTTCTGTGCTGGC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCGCCAGCACAGAAGACTaGGTGTCTCTGGTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTASTED*VSLVVS
Trigger: AGACACCACCAGAGACACCCAGTCTTCTGTGCTGGC...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCCAGACACAAGGGTTTTaGTGTCAGCTCTGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLQTQGF*CQLWAL
Trigger: CAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTG...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCAGACACAAGGGTTTTaGTGTCAGCTCTGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPQTQGF*CQLWAL
Trigger: CAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTG...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCAGTGCAGCCCTGGCTTaGAACTGGTTGTGCTGTATG +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPSAALA*NWLCCM
Trigger: CATACAGCACAACCAGTTCCAAGCCAGGGCTGCACT...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCATCTGGAAGGCCTCCTaGAGCTGGGCTAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPIWKAS*SWASAA
Trigger: GGCTGCACTAGCCCAGCTCCAGGAGGCCTTCCAGAT...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGTCATGTCTGTCATCTaGAAGGCCTCCTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGVMSVI*KASWSW
Trigger: CCAGCTCCAGGAGGCCTTCCAGATGACAGACATGAC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCATCCCCTGCCATCTGTaGGTTGGTGGACACTTTAGA +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPIPCHL*VGGHFR
Trigger: TCTAAAGTGTCCACCAACTCACAGATGGCAGGGGAT...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCACTGCTGGTCACACTaGAACTTCCCATGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPHCWSH*NFPCPC
Trigger: ACAAGGACATGGGAAGTTTCAGTGTGACCAGCAGTG...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCGTATCCAGGCCTCCTTaGGCAGCCCCTTTGACCACA +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPVSRPP*AAPLTT
Trigger: TGTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATAC...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAACCTGTGGCAGCCAGCTaGCCACACTCCTCCACTGAC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREPVAAS*PHSSTD
Trigger: GTCAGTGGAGGAGTGTGGTCAGCTGGCTGCCACAGG...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCACAGTCAGCACAGTCTTaGTGGTGCCAAGACCCATCT +
Preference number: 4 (lower is better)
Translates to: SSASGLECCSPHHPNPLSQSAQS*WCQDPS
Trigger: AGATGGGTCTTGGCACCAGCAAGACTGTGCTGACTG...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCAACTCATCAGGAAGTaGAGCAAAGCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTQLIRK*SKACGS
Trigger: GCTGCCACAGGCTTTGCTGCACTTCCTGATGAGTTG...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCAGTGCCGTGCCTGCCCTaGCTGCTGCTGCACCTCTGG +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSVPCLP*LLLHLW
Trigger: CCAGAGGTGCAGCAGCAGGCAGGGCAGGCACGGCAC...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGCAGAGGCTGTGCCGTaGCTGCCCTGCCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWAEAVP*LPCLLL
Trigger: CAGCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCAGTCCTTTGTGGAGGTaGAGCTGTGAGTGTGGGACA +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTSPLWR*SCECGT
Trigger: TGTCCCACACTCACAGCTCCACCTCCACAAAGGACT...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGCAACAGCCTCCACCATaGTGTTCAAGCTCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGQQPPP*CSSSGH
Trigger: GTGACCAGAGCTTGAACACCATGGTGGAGGCTGTTG...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCAGGTTCCGGGCAGAGCTaGAGCCAGGCAGGGACCCAA +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSGSGQS*SQAGTQ
Trigger: TTGGGTCCCTGCCTGGCTTCAGCTCTGCCCGGAACC...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGGTGAGGACATTCTTTaGAGTGTCAAGACCTCCCTT +
Preference number: 4 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQGEDIL*SVKTSL
Trigger: AAGGGAGGTCTTGACACTTCAAAGAATGTCCTCACC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACCTGTGGCAGCCAGCTaGCCACACTCCTCCACTGAC +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRPVAAS*PHSSTD
Trigger: GTCAGTGGAGGAGTGTGGTCAGCTGGCTGCCACAGG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGGTGCACAGCCTGTCCTaGGCCACGGAAGCCCGCATC +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVVHSLS*ATEARI
Trigger: GATGCGGGCTTCCGTGGCTCAGGACAGGCTGTGCAC...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCCACATTCACAGCCCCTaGAAGTCCTGTGGCCACTGT +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPHIHSP*KSCGHC
Trigger: ACAGTGGCCACAGGACTTGCAGGGGCTGTGAATGTG...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCGCCAAGACCCATCTGTaGTGTGCCTTTAGCCACATT +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTAKTHL*CAFSHI
Trigger: AATGTGGCTAAAGGCACAGCACAGATGGGTCTTGGC...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCATACATTGTCCTTTGTaGCTGTCAGCACTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLIHCPL*LSALSG
Trigger: GCCAGAGAGTGCTGACAGGCACAAAGGACAATGTAT...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGCTGATGGGCGAGGGTaGACAGCCTGTCCTGAGCCA +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRADGRG*TACPEP
Trigger: TGGCTCAGGACAGGCTGTGCACCCTCGCCCATCAGC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCCTGAGTGGAGGGTTCTaGTGCAGCTTCTCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPLSGGF*CSFSSS
Trigger: GCTGCTTGAGAAGCTGCAGCAGAACCCTCCACTCAG...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCGTCTGTTCAGAAGGTTaGAGCAGCCCTGCTGCATCC +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPVCSEG*SSPAAS
Trigger: GGATGCAGCAGGGCTGCTCCAACCTTCTGAACAGAC...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCACCTGGATGGTACCTTTaGCCACATTTACTGCACCAG +
Preference number: 4 (lower is better)
Translates to: SSASGLECCSPHHPNPLSPGWYL*PHLLHQ
Trigger: CTGGTGCAGTAAATGTGGCCAAAGGTACCATCCAGG...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGTGTTCGAAGGCCCGCTaGCGGAAGCTAGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVCSKAR*RKLGAR
Trigger: CCTGGCCCCTAGCTTCCGCCAGCGGGCCTTCGAACA...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAATCTGGAAGGCCTCCTaGAGCTGGGCTAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREIWKAS*SWASAA
Trigger: GGCTGCACTAGCCCAGCTCCAGGAGGCCTTCCAGAT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCCATTCAAGGCCCCTGTaGGTCCTGTGGTTACTGTGT +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPHSRPL*VLWLLC
Trigger: ACACAGTAACCACAGGACTCACAGGGGCCTTGAATG...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAACATTCAAGGCTCCTGTaGGCCCTGTGGTCACCGTGT +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREHSRLL*ALWSPC
Trigger: ACACGGTGACCACAGGGCTCACAGGAGCCTTGAATG...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCCATTTACTGCACCAGTaGCCCCAGCATATACATTGT +
Preference number: 4 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLHLLHQ*PQHIHC
Trigger: ACAATGTATATGCTGGGGTCACTGGTGCAGTAAATG...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCAGAACTCGGAACTGTGTaGACACCTGTGTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPELGTV*TPVWMA
Trigger: TGCCATCCACACAGGTGTTCACACAGTTCCGAGTTC...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCCTGTGGCAGCCAGCTaGCCACACTCCTCCACTGAC +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECPVAAS*PHSSTD
Trigger: GTCAGTGGAGGAGTGTGGTCAGCTGGCTGCCACAGG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGGTCCAACCAGCCAGCTaGGTGGAGGGTTCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQVQPAS*VEGSAA
Trigger: TGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGAC...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGAGGTTGGAGCAGCCCTaGTGCATCCCCTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQRLEQP*CIPCHL
Trigger: CAGATGGCAGGGGATGCAGCAGGGCTGCTCCAACCT...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGTATCCAGACCCATTTaGACTGTTTCTTTGGCCACA +
Preference number: 4 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQVSRPI*TVSLAT
Trigger: TGTGGCCAAAGAAACAGTGCAAATGGGTCTGGATAC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGAGCACCTCCAGGCCCTaGCAGGCCTCAACAACACCA +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQSTSRP*QASTTP
Trigger: TGGTGTTGTTGAGGCCTGGCAGGGCCTGGAGGTGCT...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCAGTCCTTTGTGGAGGTaGAGCTGTGAGTGTGGGACA +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPSPLWR*SCECGT
Trigger: TGTCCCACACTCACAGCTCCACCTCCACAAAGGACT...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCTTTGTAAGTCCTTTGTaGAGGTGGAGCTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPFVSPL*RWSCEC
Trigger: ACACTCACAGCTCCACCTCCACAAAGGACTTACAAA...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTCTGTACTGTTCCTTTaGCCACATTCAAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGSVLFL*PHSRLL
Trigger: CAGGAGCCTTGAATGTGGCCAAAGGAACAGTACAGA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCTTTGCACTGTTTCTTTaGCCACATTTGCTGCCCCTG +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTFALFL*PHLLPL
Trigger: CAGGGGCAGCAAATGTGGCCAAAGAAACAGTGCAAA...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGTTTGCACTGTTTCTTTaGCCACATTTGCTGCCCCTG +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGFALFL*PHLLPL
Trigger: CAGGGGCAGCAAATGTGGCCAAAGAAACAGTGCAAA...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCAAGTGCAGCCCTGGCTTaGAACTGGTTGTGCTGTATG +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPSAALA*NWLCCM
Trigger: CATACAGCACAACCAGTTCCAAGCCAGGGCTGCACT...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTAAGGCCTCCTGGAGCTaGGCTAGTGCAGCCCTGGCT +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECKASWS*ASAALA
Trigger: AGCCAGGGCTGCACTAGCCCAGCTCCAGGAGGCCTT...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGATCTGGAAGGCCTCCTaGAGCTGGGCTAGTGCAGCC +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQIWKAS*SWASAA
Trigger: GGCTGCACTAGCCCAGCTCCAGGAGGCCTTCCAGAT...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCATTCAAGGCTCCTGTaGGCCCTGTGGTCACCGTGT +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQHSRLL*ALWSPC
Trigger: ACACGGTGACCACAGGGCTCACAGGAGCCTTGAATG...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTGTCCAACCAGCCAGCTaGGTGGAGGGTTCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECVQPAS*VEGSAA
Trigger: TGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGAC...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGAGGTTGGAGCAGCCCTaGTGCATCCCCTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWRLEQP*CIPCHL
Trigger: CAGATGGCAGGGGATGCAGCAGGGCTGCTCCAACCT...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAAAGGTTGGAGCAGCCCTaGTGCATCCCCTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQRLEQP*CIPCHL
Trigger: CAGATGGCAGGGGATGCAGCAGGGCTGCTCCAACCT...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGTCTATACCCATCTGTaGTGTGCCTTTAGCCACATT +
Preference number: 4 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGVYTHL*CAFSHI
Trigger: AATGTGGCTAAAGGCACAGCACAGATGGGTATAGAC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTGCCAGCTGCTCTGTCTaGAGCTCACTACCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECASCSV*SSLPAS
Trigger: GGAGGCAGGTAGTGAGCTGCAGACAGAGCAGCTGGC...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGTATCCAGGCCTCCTTaGGCAGCCCCTTTGGCAACA +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRVSRPP*AAPLAT
Trigger: TGTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATAC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCAAGACTGGGTGTCTCTaGTGGTGTCTGTGTTCTTAT +
Preference number: 4 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTKTGCL*WCLCSY
Trigger: ATAAGAACACAGACACCACCAGAGACACCCAGTCTT...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCATGTGGATGGCATTGGTaGCTACATTACCTGAATGAG +
Preference number: 4 (lower is better)
Translates to: SSASGLECCSPHHPNPLSCGWHW*LHYLNE
Trigger: CTCATTCAGGTAATGTAGCCACCAATGCCATCCACA...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGAAGCCCGCATCTCATaGCTACCAACAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQREARIS*LPTAST
Trigger: GGTGGAGGCTGTTGGTAGCCATGAGATGCGGGCTTC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 72 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTaGCTTCTATCTTGGGTGCGTAGGGCAAGGGAGAGG +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASC*LLSWVRRARER
Trigger: CCTCTCCCTTGCCCTACGCACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 72 bp TTCCCCACTCTTCTGTGTTCCCAGTGGGCTCACGAGTaGGGTACATGCCTCCTGGTTGTATCCACCTGCCTC +
Preference number: 4 (lower is better)
Translates to: FPTLLCSQWAHE*GTCLLVVSTCL
Trigger: GAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTGAGCCCACTGGGAACACAGAAGAGTGGGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACATTCAAGGCTCCTGTaGGCCCTGTGGTCACCGTGT +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQHSRLL*ALWSPC
Trigger: ACACGGTGACCACAGGGCTCACAGGAGCCTTGAATG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCTTTGGCCACATTTACTaGACCAGTGACCCCAGCATA +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPFGHIY*TSDPSI
Trigger: TATGCTGGGGTCACTGGTGCAGTAAATGTGGCCAAA...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGTGTCCAGGCTTGTTTaGACTGTTCCTTTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREVSRLV*TVPLAV
Trigger: CACGGCCAAAGGAACAGTGCAAACAAGCCTGGACAC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGCACAGCTTCCCACATaGAGCCTCCATGGTCATGTC +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRAQLPT*SLHGHV
Trigger: GACATGACCATGGAGGCTGCATGTGGGAAGCTGTGC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGCAAGGCCATACAGCTTaGAGAGGCTGTGCCGTGCCT +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVQGHTA*RGCAVP
Trigger: AGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTG...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAATCAGCACAGTCTTGCTaGTGCCAAGACCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVRESAQSC*CQDPSV
Trigger: CACAGATGGGTCTTGGCACCAGCAAGACTGTGCTGA...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCTCAGCACAGTCTTGCTaGTGTCTATACCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPSAQSC*CLYPSV
Trigger: CACAGATGGGTATAGACACCAGCAAGACTGTGCTGA...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCATCTGTACTGTTCCTTTaGCCACATTCAAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPSVLFL*PHSRLL
Trigger: CAGGAGCCTTGAATGTGGCCAAAGGAACAGTACAGA...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGTGTCCAGGCCTCCTTaGGTAGCCCCTTTAGCTACA +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRVSRPP*VAPLAT
Trigger: TGTAGCTAAAGGGGCTACCCAAGGAGGCCTGGACAC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGTATCCAGGCCTCCTTaGGCAGCCCCTTTGGCAACA +
Preference number: 4 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWVSRPP*AAPLAT
Trigger: TGTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATAC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCAGAACACCTGTGTGGATaGCATTGGTGGCTACATTAC +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPEHLCG*HWWLHY
Trigger: GTAATGTAGCCACCAATGCCATCCACACAGGTGTTC...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGGTGCAGCAAAGCCTGTaGCAGCCAGCTGACCACACT +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVVQQSL*QPADHT
Trigger: AGTGTGGTCAGCTGGCTGCCACAGGCTTTGCTGCAC...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAAGTGCAGCCCTGGCTTaGAACTGGTTGTGCTGTATG +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVRESAALA*NWLCCM
Trigger: CATACAGCACAACCAGTTCCAAGCCAGGGCTGCACT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACAAGGCCTCCTGGAGCTaGGCTAGTGCAGCCCTGGCT +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNKASWS*ASAALA
Trigger: AGCCAGGGCTGCACTAGCCCAGCTCCAGGAGGCCTT...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAACAACAGCCTCCACCATaGTGTTCAAGCTCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREQQPPP*CSSSGH
Trigger: GTGACCAGAGCTTGAACACCATGGTGGAGGCTGTTG...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACAAGCCATATTTGTCTaGGAAGCTGCTTGTCTCACA +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPQAIFV*EAACLT
Trigger: TGTGAGACAAGCAGCTTCTCAGACAAATATGGCTTG...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACGTCCAACCAGCCAGCTaGGTGGAGGGTTCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNVQPAS*VEGSAA
Trigger: TGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGAC...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACACATTCACAGCCCCTaGAAGTCCTGTGGCCACTGT +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSHIHSP*KSCGHC
Trigger: ACAGTGGCCACAGGACTTGCAGGGGCTGTGAATGTG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCAGTCTATACCCATCTGTaGTGTGCCTTTAGCCACATT +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPVYTHL*CAFSHI
Trigger: AATGTGGCTAAAGGCACAGCACAGATGGGTATAGAC...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGTGTCCAGGCTTGTTTaGACTGTTCCTTTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRVSRLV*TVPLAV
Trigger: CACGGCCAAAGGAACAGTGCAAACAAGCCTGGACAC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACAACTCATCAGGAAGTaGAGCAAAGCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRQLIRK*SKACGS
Trigger: GCTGCCACAGGCTTTGCTGCACTTCCTGATGAGTTG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAAGCACAGCTTCCCACATaGAGCCTCCATGGTCATGTC +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQAQLPT*SLHGHV
Trigger: GACATGACCATGGAGGCTGCATGTGGGAAGCTGTGC...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGTGCCGTGCCTGCCCTaGCTGCTGCTGCACCTCTGG +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGVPCLP*LLLHLW
Trigger: CCAGAGGTGCAGCAGCAGGCAGGGCAGGCACGGCAC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCAAGTGGAGGGTTCTGCTaGAGCTTCTCAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSSGGFC*SFSSST
Trigger: GGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACT...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGCTGAGTGGAGGGTTCTaGTGCAGCTTCTCAAGCAGC +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVLSGGF*CSFSSS
Trigger: GCTGCTTGAGAAGCTGCAGCAGAACCCTCCACTCAG...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCATTTGTAAGTCCTTTGTaGAGGTGGAGCTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPFVSPL*RWSCEC
Trigger: ACACTCACAGCTCCACCTCCACAAAGGACTTACAAA...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGGTCTGTTCAGAAGGTTaGAGCAGCCCTGCTGCATCC +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVVCSEG*SSPAAS
Trigger: GGATGCAGCAGGGCTGCTCCAACCTTCTGAACAGAC...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACCTGTCAGCACTCTCTaGCTAGTATCCAGACCTGTC +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRPVSTL*LVSRPV
Trigger: GACAGGTCTGGATACTAGCCAGAGAGTGCTGACAGG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACTGTGTGGATGGCATTaGTGGCTACATTACCTGAAT +
Preference number: 4 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPLCGWH*WLHYLN
Trigger: ATTCAGGTAATGTAGCCACCAATGCCATCCACACAG...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 72 bp CCCAGTGGGCTCACGAGTTGGGTACATGCCTCCTGGTaGTATCCACCTGCCTCAATAGCCACCAATAACTTG +
Preference number: 4 (lower is better)
Translates to: PSGLTSWVHASW*YPPASIATNNL
Trigger: CAAGTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTGAGCCCACTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCATTCATGGCCCCTGTaGGTCCTGTGGTTACTGTGT +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECHSWPL*VLWLLC
Trigger: ACACAGTAACCACAGGACTCACAGGGGCCATGAATG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACATTCAAGGCCCCTGTaGGTCCTGTGGTTACTGTGT +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSHSRPL*VLWLLC
Trigger: ACACAGTAACCACAGGACTCACAGGGGCCTTGAATG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGGCTACATTACCTGAATaGGCCAGCACAGAAGACTGG +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQATLPE*ASTEDW
Trigger: CCAGTCTTCTGTGCTGGCTCATTCAGGTAATGTAGC...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACAGTCAGCACAGTCTTaGTGGTGCCAAGACCCATCT +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSQSAQS*WCQDPS
Trigger: AGATGGGTCTTGGCACCAGCAAGACTGTGCTGACTG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAATACATTGTCCTTTGTaGCTGTCAGCACTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREIHCPL*LSALSG
Trigger: GCCAGAGAGTGCTGACAGGCACAAAGGACAATGTAT...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACAACTCATCAGGAAGTaGAGCAAAGCCTGTGGCAGC +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQQLIRK*SKACGS
Trigger: GCTGCCACAGGCTTTGCTGCACTTCCTGATGAGTTG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATCAGCACAGTCTTGCTaGTGCCAAGACCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQSAQSC*CQDPSV
Trigger: CACAGATGGGTCTTGGCACCAGCAAGACTGTGCTGA...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACCTGTCAGCACTCTCTaGCTAGTATCCAGACCTGTC +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSPVSTL*LVSRPV
Trigger: GACAGGTCTGGATACTAGCCAGAGAGTGCTGACAGG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAATTTGCACTGTTTCTTTaGCCACATTTGCTGCCCCTG +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREFALFL*PHLLPL
Trigger: CAGGGGCAGCAAATGTGGCCAAAGAAACAGTGCAAA...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGTGTTCGAAGGCCCGCTaGCGGAAGCTAGGGGCCAGG +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGCSKAR*RKLGAR
Trigger: CCTGGCCCCTAGCTTCCGCCAGCGGGCCTTCGAACA...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCAACAGCCTCCACCATaGTGTTCAAGCTCTGGTCAC +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECQQPPP*CSSSGH
Trigger: GTGACCAGAGCTTGAACACCATGGTGGAGGCTGTTG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACGAAGCCCGCATCTCATaGCTACCAACAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNEARIS*LPTAST
Trigger: GGTGGAGGCTGTTGGTAGCCATGAGATGCGGGCTTC...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 72 bp TTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTaGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGT +
Preference number: 4 (lower is better)
Translates to: FRGSSAPVQSRA*GKYSQLWSQHG
Trigger: ACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGATCCCCTGCCATCTGTaGGTTGGTGGACACTTTAGA +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVIPCHL*VGGHFR
Trigger: TCTAAAGTGTCCACCAACTCACAGATGGCAGGGGAT...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAATACAGTGTCCTTTGTaGCAGTCAGCACAGTCTTGC +
Preference number: 4 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRIQCPL*QSAQSC
Trigger: GCAAGACTGTGCTGACTGGCACAAAGGACACTGTAT...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGGCCAAGACCCATCTGTaGTGTGCCTTTAGCCACATT +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVAKTHL*CAFSHI
Trigger: AATGTGGCTAAAGGCACAGCACAGATGGGTCTTGGC...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCAGCCAAGACCCATCTGTaGTGTGCCTTTAGCCACATT +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSAKTHL*CAFSHI
Trigger: AATGTGGCTAAAGGCACAGCACAGATGGGTCTTGGC...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGTCTATACCCATCTGTaGTGTGCCTTTAGCCACATT +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREVYTHL*CAFSHI
Trigger: AATGTGGCTAAAGGCACAGCACAGATGGGTATAGAC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAACAATCAGCACAGTCTTaGTGGTGTCTATACCCATCT +
Preference number: 4 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREQSAQS*WCLYPS
Trigger: AGATGGGTATAGACACCAGCAAGACTGTGCTGATTG...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGTTTGGCCACATTTACTaGACCAGTGACCCCAGCATA +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQFGHIY*TSDPSI
Trigger: TATGCTGGGGTCACTGGTGCAGTAAATGTGGCCAAA...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACGCACAGCTTCCCACATaGAGCCTCCATGGTCATGTC +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNAQLPT*SLHGHV
Trigger: GACATGACCATGGAGGCTGCATGTGGGAAGCTGTGC...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGAGGCTGTGCCGTGCCTaGCCTGCCTGCTGCTGCACC +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWRLCRA*PACCCT
Trigger: GGTGCAGCAGCAGGCAGGGCAGGCACGGCACAGCCT...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGTCTGTACTGTTCCTTTaGCCACATTCAAGGCTCCTG +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQSVLFL*PHSRLL
Trigger: CAGGAGCCTTGAATGTGGCCAAAGGAACAGTACAGA...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCAAGGCCTCCTGGAGCTaGGCTAGTGCAGCCCTGGCT +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSKASWS*ASAALA
Trigger: AGCCAGGGCTGCACTAGCCCAGCTCCAGGAGGCCTT...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACGTCATGTCTGTCATCTaGAAGGCCTCCTGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNVMSVI*KASWSW
Trigger: CCAGCTCCAGGAGGCCTTCCAGATGACAGACATGAC...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGTGGAGGTGGAGCTGTaGGTGTGGGACACCAGGTTC +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGVEVEL*VWDTRF
Trigger: GAACCTGGTGTCCCACACTCACAGCTCCACCTCCAC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCAGTCAGCACAGTCTTaGTGGTGTCTATACCCATCT +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECQSAQS*WCLYPS
Trigger: AGATGGGTATAGACACCAGCAAGACTGTGCTGACTG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACAGTCAGCACAGTCTTaGTGGTGTCTATACCCATCT +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQQSAQS*WCLYPS
Trigger: AGATGGGTATAGACACCAGCAAGACTGTGCTGACTG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAAATACAGTGTCCTTTGTaGCAGTCAGCACAGTCTTGC +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQIQCPL*QSAQSC
Trigger: GCAAGACTGTGCTGACTGGCACAAAGGACACTGTAT...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCAATACAGTGTCCTTTGTaGCAGTCAGCACAGTCTTGC +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSIQCPL*QSAQSC
Trigger: GCAAGACTGTGCTGACTGGCACAAAGGACACTGTAT...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGATACATTGTCCTTTGTaGCTGTCAGCACTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWIHCPL*LSALSG
Trigger: GCCAGAGAGTGCTGACAGGCACAAAGGACAATGTAT...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGTCAGCACAGTCTTGCTaGTGTCTATACCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: GGESVPCAPASCLLLSWVSAQSC*CLYPSV
Trigger: CACAGATGGGTATAGACACCAGCAAGACTGTGCTGA...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACCCTGTCAGCACTCTCTaGCTAGTATCCAGACCTGTC +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNPVSTL*LVSRPV
Trigger: GACAGGTCTGGATACTAGCCAGAGAGTGCTGACAGG...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGTCAGGATGTTCTTGCTaGTATCCAGACCCATTTGCA +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQSGCSC*YPDPFA
Trigger: TGCAAATGGGTCTGGATACCAGCAAGAACATCCTGA...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGTGTGGATGGCATTGGTaGCTACATTACCTGAATGAG +
Preference number: 4 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQCGWHW*LHYLNE
Trigger: CTCATTCAGGTAATGTAGCCACCAATGCCATCCACA...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAAGAACACCTGTGTGGATaGCATTGGTGGCTACATTAC +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQEHLCG*HWWLHY
Trigger: GTAATGTAGCCACCAATGCCATCCACACAGGTGTTC...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACATTTACTGCACCAGTaGCCCCAGCATATACATTGT +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQHLLHQ*PQHIHC
Trigger: ACAATGTATATGCTGGGGTCACTGGTGCAGTAAATG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCATTTACTGCACCAGTaGCCCCAGCATATACATTGT +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECHLLHQ*PQHIHC
Trigger: ACAATGTATATGCTGGGGTCACTGGTGCAGTAAATG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCCATTCAAGGCTCCTGTaGGCCCTGTGGACACCGTGT +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSHSRLL*ALWTPC
Trigger: ACACGGTGTCCACAGGGCTCACAGGAGCCTTGAATG...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACAATCAGCACAGTCTTaGTGGTGTCTATACCCATCT +
Preference number: 4 (lower is better)
Translates to: GWSDTTRREELWALERLSQSAQS*WCLYPS
Trigger: AGATGGGTATAGACACCAGCAAGACTGTGCTGATTG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAAGTATCCAGACCCATTTaGACTGTTTCTTTGGCCACA +
Preference number: 4 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQVSRPI*TVSLAT
Trigger: TGTGGCCAAAGAAACAGTGCAAATGGGTCTGGATAC...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACCCTGGATGGTACCTTTaGCCACATTTACTGCACCAG +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNPGWYL*PHLLHQ
Trigger: CTGGTGCAGTAAATGTGGCCAAAGGTACCATCCAGG...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCGTATCCAGGCCTCCTTaGGCAGCCCCTTTGGCAACA +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSVSRPP*AAPLAT
Trigger: TGTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATAC...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTAAGACTGGGTGTCTCTaGTGGTGTCTGTGTTCTTAT +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECKTGCL*WCLCSY
Trigger: ATAAGAACACAGACACCACCAGAGACACCCAGTCTT...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGAAGACTGGGTGTCTCTaGTGGTGTCTGTGTTCTTAT +
Preference number: 4 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWKTGCL*WCLCSY
Trigger: ATAAGAACACAGACACCACCAGAGACACCCAGTCTT...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCTGTGTGGATGGCATTaGTGGCTACATTACCTGAAT +
Preference number: 4 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECLCGWH*WLHYLN
Trigger: ATTCAGGTAATGTAGCCACCAATGCCATCCACACAG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCAGCTCTGGGCTCTGTaGCATGCCCCAAGCCATATT +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGQLWAL*HAPSHI
Trigger: AATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCAGTGGAGGGTTCTGCTaGAGCTTCTCAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSSGGFC*SFSSST
Trigger: GGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACT...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCGTCTGTTCAGAAGGTTaGAGCAGCCCTGCTGCATCC +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSVCSEG*SSPAAS
Trigger: GGATGCAGCAGGGCTGCTCCAACCTTCTGAACAGAC...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGTGTCCAGGCCTCCTTaGGTAGCCCCTTTAGCTACA +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGVSRPP*VAPLAT
Trigger: TGTAGCTAAAGGGGCTACCCAAGGAGGCCTGGACAC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGCCAGCACAGAAGACTaGGTGTCTCTGGTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGASTED*VSLVVS
Trigger: AGACACCACCAGAGACACCCAGTCTTCTGTGCTGGC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
3UTR CAA 72 bp GAACTCTTAGTGCAGCGAGTAGCCTGTTCTACCAGCTaGAGTGAAGCAGACACTAAGGACAACCCAACAGAA +
Preference number: 4 (lower is better)
Translates to: ELLVQRVACSTS*SEADTKDNPTE
Trigger: TTCTGTTGGGTTGTCCTTAGTGTCTGCTTCACTCAAGCTGGTAGAACAGGCTACTCGCTGCACTAAGAGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCATTCATGGCCCCTGTaGGTCCTGTGGTTACTGTGT +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGHSWPL*VLWLLC
Trigger: ACACAGTAACCACAGGACTCACAGGGGCCATGAATG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGAACTCGGAACTGTGTaGACACCTGTGTGGATGGCA +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGELGTV*TPVWMA
Trigger: TGCCATCCACACAGGTGTTCACACAGTTCCGAGTTC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACCAAGCCATATTTGTCTaGGAAGCTGCTTGTCTCACA +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNQAIFV*EAACLT
Trigger: TGTGAGACAAGCAGCTTCTCAGACAAATATGGCTTG...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCCAGTCAGCACAGTCTTaGTGGTGCCAAGACCCATCT +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSQSAQS*WCQDPS
Trigger: AGATGGGTCTTGGCACCAGCAAGACTGTGCTGACTG...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACTCAGGATGTTCTTGCTaGTATCCAGACCCATTTGCA +
Preference number: 4 (lower is better)
Translates to: SWVHASWLYPPASIATNNSGCSC*YPDPFA
Trigger: TGCAAATGGGTCTGGATACCAGCAAGAACATCCTGA...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCATCCCCTGCCATCTGTaGGTTGGTGGACACTTTAGA +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSIPCHL*VGGHFR
Trigger: TCTAAAGTGTCCACCAACTCACAGATGGCAGGGGAT...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCGCTACATTACCTGAATaGGCCAGCACAGAAGACTGG +
Preference number: 4 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSATLPE*ASTEDW
Trigger: CCAGTCTTCTGTGCTGGCTCATTCAGGTAATGTAGC...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGGTGTCCAGGCCTCCTTaGGTAGCCCCTTTAGCTACA +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWVSRPP*VAPLAT
Trigger: TGTAGCTAAAGGGGCTACCCAAGGAGGCCTGGACAC...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGCATTCATGGCCCCTGTaGGTCCTGTGGTTACTGTGT +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWHSWPL*VLWLLC
Trigger: ACACAGTAACCACAGGACTCACAGGGGCCATGAATG...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGGTGTCCAGGCTTGTTTaGACTGTTCCTTTGGCCGTG +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWVSRLV*TVPLAV
Trigger: CACGGCCAAAGGAACAGTGCAAACAAGCCTGGACAC...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGAGTCCTTTGTGGAGGTaGAGCTGTGAGTGTGGGACA +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWSPLWR*SCECGT
Trigger: TGTCCCACACTCACAGCTCCACCTCCACAAAGGACT...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGAACACCTGTGTGGATaGCATTGGTGGCTACATTAC +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGEHLCG*HWWLHY
Trigger: GTAATGTAGCCACCAATGCCATCCACACAGGTGTTC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR TCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGCACTGCTGGTCACACTaGAACTTCCCATGTCCTTGT +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWHCWSH*NFPCPC
Trigger: ACAAGGACATGGGAAGTTTCAGTGTGACCAGCAGTG...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCTGTGTGGATGGCATTaGTGGCTACATTACCTGAAT +
Preference number: 4 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGLCGWH*WLHYLN
Trigger: ATTCAGGTAATGTAGCCACCAATGCCATCCACACAG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR GCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGCAGTCAGCACAGTCTTaGTGGTGTCTATACCCATCT +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWQSAQS*WCLYPS
Trigger: AGATGGGTATAGACACCAGCAAGACTGTGCTGACTG...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGTCAGCACAGTCTTGCTaGTGTCTATACCCATCTGTG +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWSAQSC*CLYPSV
Trigger: CACAGATGGGTATAGACACCAGCAAGACTGTGCTGA...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGTCAGGATGTTCTTGCTaGTATCCAGACCCATTTGCA +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWSGCSC*YPDPFA
Trigger: TGCAAATGGGTCTGGATACCAGCAAGAACATCCTGA...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CCA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGTGTGGATGGCATTGGTaGCTACATTACCTGAATGAG +
Preference number: 4 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWCGWHW*LHYLNE
Trigger: CTCATTCAGGTAATGTAGCCACCAATGCCATCCACA...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCGGTGTCCAGGCCTCCTaGGGCAGACCCTTTAGCCAC +
Preference number: 5 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPGVQAS*GRPFSH
Trigger: GTGGCTAAAGGGTCTGCCCAAGGAGGCCTGGACACC...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGGTGTCCAGGCCTCCTaGGGCAGACCCTTTAGCCAC +
Preference number: 5 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQGVQAS*GRPFSH
Trigger: GTGGCTAAAGGGTCTGCCCAAGGAGGCCTGGACACC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCCCATGACCACAGACTaGGTGGTGTCCAGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPPMTTD*VVSRPV
Trigger: GACAGGCCTGGACACCACCAAGTCTGTGGTCATGGG...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
64% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCCCCATGACCACAGACTaGGTGGTGTCCAGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLPMTTD*VVSRPV
Trigger: GACAGGCCTGGACACCACCAAGTCTGTGGTCATGGG...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGCCCATGACCACAGACTaGGTAGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACTACCAAGTCTGTGGTCATGGG...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGGTGTCCAGGCCTCCTaGGGCAGCCCCTTTAGCTAC +
Preference number: 5 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGGVQAS*GSPFSY
Trigger: GTAGCTAAAGGGGCTGCCCAAGGAGGCCTGGACACC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGGTGTCCAGGCCTCCTaGGGCAGACCCTTTAGCCAC +
Preference number: 5 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGGVQAS*GRPFSH
Trigger: GTGGCTAAAGGGTCTGCCCAAGGAGGCCTGGACACC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
64% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAGGTATCCAGGCCTCCTaGGGCAGCCCCTTTGGCAAC +
Preference number: 5 (lower is better)
Translates to: SSASGLECCSPHHPNPLSGIQAS*GSPFGN
Trigger: GTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATACC...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp GCCTCCTGGAGCTGGGCTAGTGCAGCCCTGGCTTGGAACTGGTTGTaGTGTATGTGGCTCAGGGCATGTTCGAAGGCCCGCTGGCGGAAG +
Preference number: 5 (lower is better)
Translates to: ASWSWASAALAWNWL*CMWLRACSKARWRK
Trigger: CTTCCGCCAGCGGGCCTTCGAACATGCCCTGAGCCACATACAGCACAACCAGTTCCAAGCCAGGGCTGCACTAGCCCAGCTCCAGGAGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp CCTGCTGCTGCACCTCTGGCAGGCCCTGCAGGCTGGTTACTAGGCTaGTGTAAGCTGCATGGAGCTGATGGGCGAGGGTGCACAGCCTGT +
Preference number: 5 (lower is better)
Translates to: PAAAPLAGPAGWLLG*CKLHGADGRGCTAC
Trigger: ACAGGCTGTGCACCCTCGCCCATCAGCTCCATGCAGCTTACAGCAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGTGCAGCAGCAGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp GGCATCGAGGTGAAGGGTCCAACCAGCCAGCTGAGTGGAGGGTTCTaGTGCAGCTTCTCAAGCAGCACCTCCAGGCCCTGCCAGGCCTCA +
Preference number: 5 (lower is better)
Translates to: GIEVKGPTSQLSGGF*CSFSSSTSRPCQAS
Trigger: TGAGGCCTGGCAGGGCCTGGAGGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGACCCTTCACCTCGATGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp AGCTGGGCTAGTGCAGCCCTGGCTTGGAACTGGTTGTGCTGTATGTaGCTCAGGGCATGTTCGAAGGCCCGCTGGCGGAAGCTAGGGGCC +
Preference number: 5 (lower is better)
Translates to: SWASAALAWNWLCCM*LRACSKARWRKLGA
Trigger: GGCCCCTAGCTTCCGCCAGCGGGCCTTCGAACATGCCCTGAGCCACATACAGCACAACCAGTTCCAAGCCAGGGCTGCACTAGCCCAGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCCATGACCACAGACTaGGTAGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACTACCAAGTCTGTGGTCATGGG...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCAGTGTCCAGGCCTTCTaGGGCAGCCCCTTTAGCCAT +
Preference number: 5 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPSVQAF*GSPFSH
Trigger: ATGGCTAAAGGGGCTGCCCAAGAAGGCCTGGACACT...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238734.2
CDS GCA 90 bp AGGCCCTGCCAGGCCTCAACAACACCAGCACTGCTCTGGGCCAGCTaGTCTGTCTGCAGCTCACTACCTGCCTCCGAAGACACAAGGCCA +
Preference number: 5 (lower is better)
Translates to: RPCQASTTPALLWAS*SVCSSLPASEDTRP
Trigger: TGGCCTTGTGTCTTCGGAGGCAGGTAGTGAGCTGCAGACAGAGCAGCTGGCCCAGAGCAGTGCTGGTGTTGTTGAGGCCTGGCAGGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp AGTGGAGGGTTCTGCTGCAGCTTCTCAAGCAGCACCTCCAGGCCCTaGCAGGCCTCAACAACACCAGCACTGCTCTGGGCCAGCTGCTCT +
Preference number: 5 (lower is better)
Translates to: SGGFCCSFSSSTSRP*QASTTPALLWASCS
Trigger: AGAGCAGCTGGCCCAGAGCAGTGCTGGTGTTGTTGAGGCCTGGCAGGGCCTGGAGGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp CTGGCCACAAGGCATCGAGGTGAAGGGTCCAACCAGCCAGCTGAGTaGAGGGTTCTGCTGCAGCTTCTCAAGCAGCACCTCCAGGCCCTG +
Preference number: 5 (lower is better)
Translates to: LATRHRGEGSNQPAE*RVLLQLLKQHLQAL
Trigger: CAGGGCCTGGAGGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGACCCTTCACCTCGATGCCTTGTGGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCTGTCTGTTCAGAAGGTaGGAGCAGCCCTGCTGCATC +
Preference number: 5 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPCLFRR*EQPCCI
Trigger: GATGCAGCAGGGCTGCTCCAACCTTCTGAACAGACA...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCTTGACAAGACCTTaGGCCACGCCCACTGCTCCC +
Preference number: 5 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPPLTRP*ATPTAP
Trigger: GGGAGCAGTGGGCGTGGCCAAAGGTCTTGTCAAGGG...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCGTGGTTACCGTGTCCTaGGTGCCCATGACCACAGAC +
Preference number: 5 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTVVTVS*VPMTTD
Trigger: GTCTGTGGTCATGGGCACCAAGGACACGGTAACCAC...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCACCAGTCAGCACAGTCTaGCTGGTGCCAAGACCCATC +
Preference number: 5 (lower is better)
Translates to: SSASGLECCSPHHPNPLSPVSTV*LVPRPI
Trigger: GATGGGTCTTGGCACCAGCAAGACTGTGCTGACTGG...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCCATGACCACAGATTaGGTAGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACTACCAAATCTGTGGTCATGGG...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCGTGGTCACGGTGTCCTaGGTACCTAAGAGCACAGAC +
Preference number: 5 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLVVTVS*VPKSTD
Trigger: GTCTGTGCTCTTAGGTACCAAGGACACCGTGACCAC...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCAGTATCCAGGCCTCCTaGAGCAGCCCCTTTGACCAC +
Preference number: 5 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTSIQAS*SSPFDH
Trigger: GTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATACT...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGAGTATCCAGGCCTCCTaGAGCAGCCCCTTTGACCAC +
Preference number: 5 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGSIQAS*SSPFDH
Trigger: GTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATACT...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGACCAGCAAAGTGCCTCTGGGGCAGCTCGGCCTCTGGGCTGGAGTGTTGCAGGGTGTCCAGGCTTGTTaGCACTGTTCCTTTGGCCGT +
Preference number: 5 (lower is better)
Translates to: GTSKVPLGQLGLWAGVLQGVQAC*HCSFGR
Trigger: ACGGCCAAAGGAACAGTGCAAACAAGCCTGGACACC...CTGCAACACTCCAGCCCAGAGGCCGAGCTGCCCCAGAGGCACTTTGCTGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp GGGCAGGAGTCCCCGAGGGGTCTGTTGCTGTTTGTAAGTCCTTTGTaGAGGTGGAGCTGTGAGTGTGGGACACCAGGTTCCGGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: GQESPRGLLLFVSPL*RWSCECGTPGSGQS
Trigger: GCTCTGCCCGGAACCTGGTGTCCCACACTCACAGCTCCACCTCCACAAAGGACTTACAAACAGCAACAGACCCCTCGGGGACTCCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCTCCCCGAGGGGTCTGTaGCTGTTTGTAAGTCCTTTG +
Preference number: 5 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLSPRGL*LFVSPL
Trigger: CAAAGGACTTACAAACAGCAACAGACCCCTCGGGGA...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGGTGGTTACTGTGTCCTaGGTGCCCATGACCACAGAC +
Preference number: 5 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGVVTVS*VPMTTD
Trigger: GTCTGTGGTCATGGGCACCAAGGACACAGTAACCAC...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp AAGACCTTTGGCCACGCCCACTGCTCCCATCACACCTCCAGATACTaGCTCCTTAGTTCCGACAAGGGCCGACTGGGTAGCACCCAGTCC +
Preference number: 5 (lower is better)
Translates to: KTFGHAHCSHHTSRY*LLSSDKGRLGSTQS
Trigger: GGACTGGGTGCTACCCAGTCGGCCCTTGTCGGAACTAAGGAGGCAGTATCTGGAGGTGTGATGGGAGCAGTGGGCGTGGCCAAAGGTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp CTGCACAGCTTCCCACATGCAGCCTCCATGGTCATGTCTGTCATCTaGAAGGCCTCCTGGAGCTGGGCTAGTGCAGCCCTGGCTTGGAAC +
Preference number: 5 (lower is better)
Translates to: LHSFPHAASMVMSVI*KASWSWASAALAWN
Trigger: GTTCCAAGCCAGGGCTGCACTAGCCCAGCTCCAGGAGGCCTTCCAGATGACAGACATGACCATGGAGGCTGCATGTGGGAAGCTGTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAACCCATGACCACAGACTaGGTGGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACCACCAAGTCTGTGGTCATGGG...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCACCAGTCAGCACAGTCTaGCTGGTGTCTATACCCATC +
Preference number: 5 (lower is better)
Translates to: SSASGLECCSPHHPNPLSPVSTV*LVSIPI
Trigger: GATGGGTATAGACACCAGCAAGACTGTGCTGACTGG...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGCCCTGGATGGTACCTTaGGCCACATTTACTGCACCA +
Preference number: 5 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGPWMVP*ATFTAP
Trigger: TGGTGCAGTAAATGTGGCCAAAGGTACCATCCAGGG...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CAGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCTGCCCCAAGCCATATTaGTCTGAGAAGCTGCTTGTC +
Preference number: 5 (lower is better)
Translates to: QLGLWAGVLQSTPPQPPLCPKPY*SEKLLV
Trigger: GACAAGCAGCTTCTCAGACAAATATGGCTTGGGGCA...GAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCTGCCCCAAGCCATATTaGTCTGAGAAGCTGCTTGTC +
Preference number: 5 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPCPKPY*SEKLLV
Trigger: GACAAGCAGCTTCTCAGACAAATATGGCTTGGGGCA...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCATGAGCACGGACTaGGTAGTGTCCAGGCCTTCT +
Preference number: 5 (lower is better)
Translates to: ELWGSTASCGHSMVPGTPPMSTD*VVSRPS
Trigger: AGAAGGCCTGGACACTACCAAGTCCGTGCTCATGGG...TGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238734.2
CDS TCA 90 bp GAGGGGTCTGTTGCTGTTTGTAAGTCCTTTGTGGAGGTGGAGCTGTaGGTGTGGGACACCAGGTTCCGGGCAGAGCTGAAGCCAGGCAGG +
Preference number: 5 (lower is better)
Translates to: EGSVAVCKSFVEVEL*VWDTRFRAELKPGR
Trigger: CCTGCCTGGCTTCAGCTCTGCCCGGAACCTGGTGTCCCACACTCACAGCTCCACCTCCACAAAGGACTTACAAACAGCAACAGACCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp GAGCCACGGAAGCCCGCATCTCATGGCTACCAACAGCCTCCACCATaGTGTTCAAGCTCTGGTCACTGCACAGCTTCCCACATGCAGCCT +
Preference number: 5 (lower is better)
Translates to: EPRKPASHGYQQPPP*CSSSGHCTASHMQP
Trigger: AGGCTGCATGTGGGAAGCTGTGCAGTGACCAGAGCTTGAACACCATGGTGGAGGCTGTTGGTAGCCATGAGATGCGGGCTTCCGTGGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCTGTCTGTTCAGAAGGTaGGAGCAGCCCTGCTGCATC +
Preference number: 5 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPCLFRR*EQPCCI
Trigger: GATGCAGCAGGGCTGCTCCAACCTTCTGAACAGACA...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCGTGGTTACTGTGTCCTaGGTGCCCATGACCACAGAC +
Preference number: 5 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPVVTVS*VPMTTD
Trigger: GTCTGTGGTCATGGGCACCAAGGACACAGTAACCAC...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGGTGTCCAGGCCTCCTaGGGCAGCCCCTTTAGCTAC +
Preference number: 5 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRGVQAS*GSPFSY
Trigger: GTAGCTAAAGGGGCTGCCCAAGGAGGCCTGGACACC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAACCCATGAGCACGGACTaGGTAGTGTCCAGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREPMSTD*VVSRPP
Trigger: AGGAGGCCTGGACACTACCAAGTCCGTGCTCATGGG...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCCTGTGTGGATGGCATaGGTGGCTACATTACCTGAA +
Preference number: 5 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTPVWMA*VATLPE
Trigger: TTCAGGTAATGTAGCCACCAATGCCATCCACACAGG...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACCCTTGACAAGACCTTaGGCCACGCCCACTGCTCCC +
Preference number: 5 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQPLTRP*ATPTAP
Trigger: GGGAGCAGTGGGCGTGGCCAAAGGTCTTGTCAAGGG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACCCTTGACAAGACCTTaGGCCACGCCCACTGCTCCC +
Preference number: 5 (lower is better)
Translates to: GWSDTTRREELWALERLSPLTRP*ATPTAP
Trigger: GGGAGCAGTGGGCGTGGCCAAAGGTCTTGTCAAGGG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGCCCATGACCACAGACTaGGTGGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACCACCAAGTCTGTGGTCATGGG...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCCCATGACCACAGACTaGGTAGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACTACCAAGTCTGTGGTCATGGG...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTGGTGTCCAGGCCTCCTaGGGCAGCCCCTTTAGCTAC +
Preference number: 5 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECGVQAS*GSPFSY
Trigger: GTAGCTAAAGGGGCTGCCCAAGGAGGCCTGGACACC...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCATCACTAGCTGTGCAGGGACCCCCAGGTGGGACCAGCAAAGTGCCTCTGGGGCACATACAGTGTCCTTaGTGCCAATCAGCACAGTCT +
Preference number: 5 (lower is better)
Translates to: PSLAVQGPPGGTSKVPLGHIQCP*CQSAQS
Trigger: AGACTGTGCTGATTGGCACAAAGGACACTGTATGTG...CCCCAGAGGCACTTTGCTGGTCCCACCTGGGGGTCCCTGCACAGCTAGTGATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCACATACAGTGTCCTTaGTGCCAATCAGCACAGTCT +
Preference number: 5 (lower is better)
Translates to: WGSTASCGHSMVPGTPPTHIQCP*CQSAQS
Trigger: AGACTGTGCTGATTGGCACAAAGGACACTGTATGTG...GGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCCCATGAGCACGGACTaGGTAGTGTCCAGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQPMSTD*VVSRPP
Trigger: AGGAGGCCTGGACACTACCAAGTCCGTGCTCATGGG...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGCCCATGACCACAGACTaGGTGGTGTCCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWPMTTD*VVSKPP
Trigger: GGGCGGCTTGGACACCACCAAGTCTGTGGTCATGGG...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACCCATGACCACAGACTaGGTGGTGTCCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: GWSDTTRREELWALERLSPMTTD*VVSKPP
Trigger: GGGCGGCTTGGACACCACCAAGTCTGTGGTCATGGG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCGTGGTTACTGTGTCCTaGGTGCCCATGACCACAGAT +
Preference number: 5 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPVVTVS*VPMTTD
Trigger: ATCTGTGGTCATGGGCACCAAGGACACAGTAACCAC...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGGTATCCAGGCCTCCTaGGGCAGCCCCTTTGGCAAC +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWGIQAS*GSPFGN
Trigger: GTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATACC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 90 bp CCTTTCAACTCATCAGGAAGTGCAGCAAAGCCTGTGGCAGCCAGCTaGCCACACTCCTCCACTGACCTGGTAGCTGCGCAGGCAGATGAA +
Preference number: 5 (lower is better)
Translates to: PFNSSGSAAKPVAAS*PHSSTDLVAAQADE
Trigger: TTCATCTGCCTGCGCAGCTACCAGGTCAGTGGAGGAGTGTGGTCAGCTGGCTGCCACAGGCTTTGCTGCACTTCCTGATGAGTTGAAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACCCACCCACTGTGTCCTTCGTATaGGTGAGGACATTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: GEVQPAVVTAWSLGPHPPTVSFV*VRTFFE
Trigger: TTCAAAGAATGTCCTCACCAATACGAAGGACACAGT...GGGTGGGTGGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCCCATGAGCACGGACTaGGTAGTGTCCAGGCCTCCT +
Preference number: 5 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECPMSTD*VVSRPP
Trigger: AGGAGGCCTGGACACTACCAAGTCCGTGCTCATGGG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCAGTGGCTGGGTCTAGTGTCACCCTGATGCTGACATGGCAGAAGGTCAGGGAAGTGGTCACGGTGTCCTaGGTACCTAAGAGCACAGAC +
Preference number: 5 (lower is better)
Translates to: PVAGSSVTLMLTWQKVREVVTVS*VPKSTD
Trigger: GTCTGTGCTCTTAGGTACCAAGGACACCGTGACCAC...TTCCCTGACCTTCTGCCATGTCAGCATCAGGGTGACACTAGACCCAGCCACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCCCTGTGTGGATGGCATaGGTGGCTACATTACCTGAA +
Preference number: 5 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPPVWMA*VATLPE
Trigger: TTCAGGTAATGTAGCCACCAATGCCATCCACACAGG...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp AAGGGCCGACTGGGTAGCACCCAGTCCACCCTGGACCATTCCTTTTaGAGCATCCATGATGCCAAACACCCCAGAGAAGGCATCTTCACT +
Preference number: 5 (lower is better)
Translates to: KGRLGSTQSTLDHSF*SIHDAKHPREGIFT
Trigger: AGTGAAGATGCCTTCTCTGGGGTGTTTGGCATCATGGATGCTGCAAAAGGAATGGTCCAGGGTGGACTGGGTGCTACCCAGTCGGCCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp TGTTTGCACTGTTCCTTTGGCCGTGTCCATTGTGCCTGTGAGTGCTaGGTTCGAAGTATCCAGGCCTCCTTGAGCAGCCCCTTTGACCAC +
Preference number: 5 (lower is better)
Translates to: CLHCSFGRVHCACEC*VRSIQASLSSPFDH
Trigger: GTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACAGTGCAAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp GCTTGTTTGCACTGTTCCTTTGGCCGTGTCCATTGTGCCTGTGAGTaGTGCGTTCGAAGTATCCAGGCCTCCTTGAGCAGCCCCTTTGAC +
Preference number: 5 (lower is better)
Translates to: ACLHCSFGRVHCACE*CVRSIQASLSSPFD
Trigger: GTCAAAGGGGCTGCTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACAGTGCAAACAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp CTGAAACTTCCCATGTCCTTGTCTCCAGCTGTCTGTTCAGAAGGTTaGAGCAGCCCTGCTGCATCCCCTGCCATCTGTGAGTTGGTGGAC +
Preference number: 5 (lower is better)
Translates to: LKLPMSLSPAVCSEG*SSPAASPAICELVD
Trigger: GTCCACCAACTCACAGATGGCAGGGGATGCAGCAGGGCTGCTCCAACCTTCTGAACAGACAGCTGGAGACAAGGACATGGGAAGTTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGCTCGGCCTCTGGGCTGGAGTGTTGCAGTCCACACCACCCCAACCCCCTCTCAACTGTGTCCTTCGTATaGGTGAGGACATTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: SSASGLECCSPHHPNPLSTVSFV*VRTFFE
Trigger: TTCAAAGAATGTCCTCACCAATACGAAGGACACAGT...TGAGAGGGGGTTGGGGTGGTGTGGACTGCAACACTCCAGCCCAGAGGCCGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGTGGTTACTGTGTCCTaGGTGCCCATGACCACAGAC +
Preference number: 5 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRVVTVS*VPMTTD
Trigger: GTCTGTGGTCATGGGCACCAAGGACACAGTAACCAC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGTGGTTACCGTGTCCTaGGTGCCCATGACCACAGAC +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWVVTVS*VPMTTD
Trigger: GTCTGTGGTCATGGGCACCAAGGACACGGTAACCAC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGTGGTGAGTCAGTGCCTTGTGCCCCAGCATCTTGTTTGCTTCTATCTTGGGTGCCCATGACCACAGATTaGGTAGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: GGESVPCAPASCLLLSWVPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACTACCAAATCTGTGGTCATGGG...CACCCAAGATAGAAGCAAACAAGATGCTGGGGCACAAGGCACTGACTCACCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTCCCATGACCACAGATTaGGTAGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACTACCAAATCTGTGGTCATGGG...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACGGTATCCAGGCCTCCTaGGGCAGCCCCTTTGGCAAC +
Preference number: 5 (lower is better)
Translates to: SWVHASWLYPPASIATNNGIQAS*GSPFGN
Trigger: GTTGCCAAAGGGGCTGCCCAAGGAGGCCTGGATACC...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGTGGTCACGGTGTCCTaGGTACCTAAGAGCACAGAC +
Preference number: 5 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRVVTVS*VPKSTD
Trigger: GTCTGTGCTCTTAGGTACCAAGGACACCGTGACCAC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGAGTATCCAGGCCTCCTaGAGCAGCCCCTTTGACCAC +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWSIQAS*SSPFDH
Trigger: GTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATACT...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GACCTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGTCCCCGAGGGGTCTGTaGCTGTTTGTAAGTCCTTTG +
Preference number: 5 (lower is better)
Translates to: DLIQGRSHTHRLAELLVQSPRGL*LFVSPL
Trigger: CAAAGGACTTACAAACAGCAACAGACCCCTCGGGGA...CTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGACCAGTCAGCACAGTCTaGCTGGTGTCTATACCCATC +
Preference number: 5 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRPVSTV*LVSIPI
Trigger: GATGGGTATAGACACCAGCAAGACTGTGCTGACTGG...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACCCCATGACCACAGACTaGGTAGTGTCCAGGCCTCCC +
Preference number: 5 (lower is better)
Translates to: SWVHASWLYPPASIATNNPMTTD*VVSRPP
Trigger: GGGAGGCCTGGACACTACCAAGTCTGTGGTCATGGG...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGTGGTTACTGTGTCCTaGGTGCCCATGACCACAGAT +
Preference number: 5 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRVVTVS*VPMTTD
Trigger: ATCTGTGGTCATGGGCACCAAGGACACAGTAACCAC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCTCGTTTTCTCAGCAGAGCAGGCCTGAGTCAGGCCTATAGCAGCCTGGAATGTGGTGTCCAGGCTTGTTaGCACTGTTCCTTTGGCCGT +
Preference number: 5 (lower is better)
Translates to: SRFLSRAGLSQAYSSLECGVQAC*HCSFGR
Trigger: ACGGCCAAAGGAACAGTGCAAACAAGCCTGGACACC...ACATTCCAGGCTGCTATAGGCCTGACTCAGGCCTGCTCTGCTGAGAAAACGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCCGAGGGGTCTGTaGCTGTTTGTAAGTCCTTTG +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWSPRGL*LFVSPL
Trigger: CAAAGGACTTACAAACAGCAACAGACCCCTCGGGGA...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGTCCCTGGGACCCCACTGTGTCCTTCGTATaGGTGAGGACATTCTTTGAA +
Preference number: 5 (lower is better)
Translates to: RALGKYSQLWSQHGPWDPTVSFV*VRTFFE
Trigger: TTCAAAGAATGTCCTCACCAATACGAAGGACACAGT...GGGGTCCCAGGGACCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACCAGTCAGCACAGTCTaGCTGGTGTCTATACCCATC +
Preference number: 5 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQPVSTV*LVSIPI
Trigger: GATGGGTATAGACACCAGCAAGACTGTGCTGACTGG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACCCAGTCAGCACAGTCTaGCTGGTGCCAAGACCCATC +
Preference number: 5 (lower is better)
Translates to: SWVHASWLYPPASIATNNPVSTV*LVPRPI
Trigger: GATGGGTCTTGGCACCAGCAAGACTGTGCTGACTGG...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAACCCTGGATGGTACCTTaGGCCACATTTACTGCACCA +
Preference number: 5 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQPWMVP*ATFTAP
Trigger: TGGTGCAGTAAATGTGGCCAAAGGTACCATCCAGGG...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGTGGTTACTGTGTCCTaGGTGCCCATGACCACAGAT +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWVVTVS*VPMTTD
Trigger: ATCTGTGGTCATGGGCACCAAGGACACAGTAACCAC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTGATTCAGGGCAGGTCTCATACCCACAGGCTGGCAGAACTCTTAGTGCAGCGAGGTATCCAGACCCATTaGCACTGTTTCTTTGGCCAC +
Preference number: 5 (lower is better)
Translates to: LIQGRSHTHRLAELLVQRGIQTH*HCFFGH
Trigger: GTGGCCAAAGAAACAGTGCAAATGGGTCTGGATACC...TCGCTGCACTAAGAGTTCTGCCAGCCTGTGGGTATGAGACCTGCCCTGAATCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CACGAGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATGCTGGTGTCCAGGCTaGTTTGCACTGTTCCTTTGG +
Preference number: 5 (lower is better)
Translates to: HELGTCLLVVSTCLNSHQCWCPG*FALFLW
Trigger: CCAAAGGAACAGTGCAAACAAGCCTGGACACCAGCA...TTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACTCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp TCCTTCATGCCTATAAGCATATGCTTGCTGGTGTCCAGGCTTGTTTaGACTGTTCCTTTGGCCGTGTCCATTGTGCCTGTGAGTGCTGCG +
Preference number: 5 (lower is better)
Translates to: SFMPISICLLVSRLV*TVPLAVSIVPVSAA
Trigger: CGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACAGTGCAAACAAGCCTGGACACCAGCAAGCATATGCTTATAGGCATGAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 90 bp GCCCTGACTCTGAGACTGCCAGCTGAGCTTGTTCCTCAGTTGTCATaGGCTGAAAGATATCACCCAGCCCTTTCAACTCATCAGGAAGTG +
Preference number: 5 (lower is better)
Translates to: ALTLRLPAELVPQLS*AERYHPALSTHQEV
Trigger: CACTTCCTGATGAGTTGAAAGGGCTGGGTGATATCTTTCAGCCCATGACAACTGAGGAACAAGCTCAGCTGGCAGTCTCAGAGTCAGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCCCATGACCACAGACTaGGTGGTGTCCAGGCCACCC +
Preference number: 5 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGPMTTD*VVSRPP
Trigger: GGGTGGCCTGGACACCACCAAGTCTGTGGTCATGGG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCCCATGACCACAGACTaGGTGGTGTCCAAGCCGCCC +
Preference number: 5 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGPMTTD*VVSKPP
Trigger: GGGCGGCTTGGACACCACCAAGTCTGTGGTCATGGG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TCCTGTTCAATCCAGAGCTTTGGGGAAGTACAGCCAGCTGTGGTCACAGCATGGGGTATCCAGACCCATTaGCACTGTTTCTTTGGCCAC +
Preference number: 5 (lower is better)
Translates to: SCSIQSFGEVQPAVVTAWGIQTH*HCFFGH
Trigger: GTGGCCAAAGAAACAGTGCAAATGGGTCTGGATACC...CCATGCTGTGACCACAGCTGGCTGTACTTCCCCAAAGCTCTGGATTGAACAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 90 bp ATACCAGACACAAGGGTTTTGGTGTCAGCTCTGGGCTCTGTGACATaGCCCAAGCCATATTTGTCTGAGAAGCTGCTTGTCTCACAGCAC +
Preference number: 5 (lower is better)
Translates to: IPDTRVLVSALGSVT*PKPYLSEKLLVSQH
Trigger: GTGCTGTGAGACAAGCAGCTTCTCAGACAAATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTGGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp GGTTGGAGTGACACCACTCGTAGAGAAGAGCTATGGGCCCTGGAAAGACTGTCACACATACAGTGTCCTTaGTGCCAATCAGCACAGTCT +
Preference number: 5 (lower is better)
Translates to: GWSDTTRREELWALERLSHIQCP*CQSAQS
Trigger: AGACTGTGCTGATTGGCACAAAGGACACTGTATGTG...TGACAGTCTTTCCAGGGCCCATAGCTCTTCTCTACGAGTGGTGTCACTCCAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp AGTTGGGTACATGCCTCCTGGTTGTATCCACCTGCCTCAATAGCCACCAATAACTGCTGGTGTCCAGGCTaGTTTGCACTGTTCCTTTGG +
Preference number: 5 (lower is better)
Translates to: SWVHASWLYPPASIATNNCWCPG*FALFLW
Trigger: CCAAAGGAACAGTGCAAACAAGCCTGGACACCAGCA...GTTATTGGTGGCTATTGAGGCAGGTGGATACAACCAGGAGGCATGTACCCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCCAGTCAGCACAGTCTaGCTGGTGCCAAGACCCATC +
Preference number: 5 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGPVSTV*LVPRPI
Trigger: GATGGGTCTTGGCACCAGCAAGACTGTGCTGACTGG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGCCCATGACCACAGACTaGGTGGTGTCCAGGCCTGTC +
Preference number: 5 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWPMTTD*VVSRPV
Trigger: GACAGGCCTGGACACCACCAAGTCTGTGGTCATGGG...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGCCCATGACCACAGACTaGGTAGTGTCCAGGCCTCCC +
Preference number: 5 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWPMTTD*VVSRPP
Trigger: GGGAGGCCTGGACACTACCAAGTCTGTGGTCATGGG...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGGGTGTCCAGGCTTGTTaGCACTGTTCCTTTGGCCGT +
Preference number: 5 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGGVQAC*HCSFGR
Trigger: ACGGCCAAAGGAACAGTGCAAACAAGCCTGGACACC...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGGTGGTTACCGTGTCCTaGGTGCCCATGACCACAGAC +
Preference number: 5 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWVVTVS*VPMTTD
Trigger: GTCTGTGGTCATGGGCACCAAGGACACGGTAACCAC...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp TTTCAAATTCACTTTCCGAGGATCTTCTGCTCCTGTTCAATCCAGAGCTTTGGGCCCTGGATGGTACCTTaGGCCACATTTACTGCACCA +
Preference number: 5 (lower is better)
Translates to: FQIHFPRIFCSCSIQSFGPWMVP*ATFTAP
Trigger: TGGTGCAGTAAATGTGGCCAAAGGTACCATCCAGGG...CCCAAAGCTCTGGATTGAACAGGAGCAGAAGATCCTCGGAAAGTGAATTTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCTGCTGGTGTCCAGGCTaGTTTGCACTGTTCCTTTGG +
Preference number: 5 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSCWCPG*FALFLW
Trigger: CCAAAGGAACAGTGCAAACAAGCCTGGACACCAGCA...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CCAATAACTTGGCATGATGTAATGAGGCTCATGCCATCTGTTGGAAAGCTTAGCTGCCCCAAGCCATATTaGTCTGAGAAGCTGCTTGTC +
Preference number: 5 (lower is better)
Translates to: PITWHDVMRLMPSVGKLSCPKPY*SEKLLV
Trigger: GACAAGCAGCTTCTCAGACAAATATGGCTTGGGGCA...GCTAAGCTTTCCAACAGATGGCATGAGCCTCATTACATCATGCCAAGTTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS-3UTR CAA 90 bp CTAAAGCTTGTGGACATTGTTATTTTCCAAGAGATAAAGGGGCTGGAAGATTGGCCTGTGTGGATGGCATaGGTGGCTACATTACCTGAA +
Preference number: 5 (lower is better)
Translates to: LKLVDIVIFQEIKGLEDWPVWMA*VATLPE
Trigger: TTCAGGTAATGTAGCCACCAATGCCATCCACACAGG...CCAATCTTCCAGCCCCTTTATCTCTTGGAAAATAACAATGTCCACAAGCTTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp GGCTGCTGTAAGCTGCATGGAGCTGATGGGCGAGGGTaGACAGCCTGTCCTGAGCCACGGAAGCCCGCATCT +
Preference number: 6 (lower is better)
Translates to: GCCKLHGADGRG*TACPEPRKPAS
Trigger: AGATGCGGGCTTCCGTGGCTCAGGACAGGCTGTGCACCCTCGCCCATCAGCTCCATGCAGCTTACAGCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp GCACCTCTGGCAGGCCCTGCAGGCTGGTTACTAGGCTaGTGTAAGCTGCATGGAGCTGATGGGCGAGGGTGC +
Preference number: 6 (lower is better)
Translates to: APLAGPAGWLLG*CKLHGADGRGC
Trigger: GCACCCTCGCCCATCAGCTCCATGCAGCTTACAGCAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp TCCGAAGACACAAGGCCATACAGCTTGCAGAGGCTGTaGCGTGCCTGCCCTGCCTGCTGCTGCACCTCTGGC +
Preference number: 6 (lower is better)
Translates to: SEDTRPYSLQRL*RACPACCCTSG
Trigger: GCCAGAGGTGCAGCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTGTGTCTTCGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp CCTCCAGGCCCTGCCAGGCCTCAACAACACCAGCACTaGTCTGGGCCAGCTGCTCTGTCTGCAGCTCACTAC +
Preference number: 6 (lower is better)
Translates to: PPGPARPQQHQH*SGPAALSAAHY
Trigger: GTAGTGAGCTGCAGACAGAGCAGCTGGCCCAGAGCAGTGCTGGTGTTGTTGAGGCCTGGCAGGGCCTGGAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp CACTACCTGCCTCCGAAGACACAAGGCCATACAGCTTaGAGAGGCTGTGCCGTGCCTGCCCTGCCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: HYLPPKTQGHTA*RGCAVPALPAA
Trigger: AGCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTGTGTCTTCGGAGGCAGGTAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp TCACTACCTGCCTCCGAAGACACAAGGCCATACAGCTaGCAGAGGCTGTGCCGTGCCTGCCCTGCCTGCTGC +
Preference number: 6 (lower is better)
Translates to: SLPASEDTRPYS*QRLCRACPACC
Trigger: GCAGCAGGCAGGGCAGGCACGGCACAGCCTCTGCAAGCTGTATGGCCTTGTGTCTTCGGAGGCAGGTAGTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp AGCTGGGCTAGTGCAGCCCTGGCTTGGAACTGGTTGTaGTGTATGTGGCTCAGGGCATGTTCGAAGGCCCGC +
Preference number: 6 (lower is better)
Translates to: SWASAALAWNWL*CMWLRACSKAR
Trigger: GCGGGCCTTCGAACATGCCCTGAGCCACATACAGCACAACCAGTTCCAAGCCAGGGCTGCACTAGCCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp AGTGCAGCCCTGGCTTGGAACTGGTTGTGCTGTATGTaGCTCAGGGCATGTTCGAAGGCCCGCTGGCGGAAG +
Preference number: 6 (lower is better)
Translates to: SAALAWNWLCCM*LRACSKARWRK
Trigger: CTTCCGCCAGCGGGCCTTCGAACATGCCCTGAGCCACATACAGCACAACCAGTTCCAAGCCAGGGCTGCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp CTGCCTGCTGCTGCACCTCTGGCAGGCCCTGCAGGCTaGTTACTAGGCTGCTGTAAGCTGCATGGAGCTGAT +
Preference number: 6 (lower is better)
Translates to: LPAAAPLAGPAG*LLGCCKLHGAD
Trigger: ATCAGCTCCATGCAGCTTACAGCAGCCTAGTAACCAGCCTGCAGGGCCTGCCAGAGGTGCAGCAGCAGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp TGGAGCAGCCCTGCTGCATCCCCTGCCATCTGTGAGTaGGTGGACACTTTAGATGAGGGGGCAGGAGTCCCC +
Preference number: 6 (lower is better)
Translates to: WSSPAASPAICE*VDTLDEGAGVP
Trigger: GGGGACTCCTGCCCCCTCATCTAAAGTGTCCACCAACTCACAGATGGCAGGGGATGCAGCAGGGCTGCTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp AGCTGTGAGTGTGGGACACCAGGTTCCGGGCAGAGCTaGAGCCAGGCAGGGACCCAAAGAAACTGCTCAAGG +
Preference number: 6 (lower is better)
Translates to: SCECGTPGSGQS*SQAGTQRNCSR
Trigger: CCTTGAGCAGTTTCTTTGGGTCCCTGCCTGGCTTCAGCTCTGCCCGGAACCTGGTGTCCCACACTCACAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp GCTCTGGGCCAGCTGCTCTGTCTGCAGCTCACTACCTaGCTCCGAAGACACAAGGCCATACAGCTTGCAGAG +
Preference number: 6 (lower is better)
Translates to: ALGQLLCLQLTT*LRRHKAIQLAE
Trigger: CTCTGCAAGCTGTATGGCCTTGTGTCTTCGGAGGCAGGTAGTGAGCTGCAGACAGAGCAGCTGGCCCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp AAGGCCTCCTGGAGCTGGGCTAGTGCAGCCCTGGCTTaGAACTGGTTGTGCTGTATGTGGCTCAGGGCATGT +
Preference number: 6 (lower is better)
Translates to: KASWSWASAALA*NWLCCMWLRAC
Trigger: ACATGCCCTGAGCCACATACAGCACAACCAGTTCCAAGCCAGGGCTGCACTAGCCCAGCTCCAGGAGGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp AGGCATCGAGGTGAAGGGTCCAACCAGCCAGCTGAGTaGAGGGTTCTGCTGCAGCTTCTCAAGCAGCACCTC +
Preference number: 6 (lower is better)
Translates to: RHRGEGSNQPAE*RVLLQLLKQHL
Trigger: GAGGTGCTGCTTGAGAAGCTGCAGCAGAACCCTCCACTCAGCTGGCTGGTTGGACCCTTCACCTCGATGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp TGTTCCTTTGGCCGTGTCCATTGTGCCTGTGAGTGCTaGGTTCGAAGTATCCAGGCCTCCTTGAGCAGCCCC +
Preference number: 6 (lower is better)
Translates to: CSFGRVHCACEC*VRSIQASLSSP
Trigger: GGGGCTGCTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp CCCATGTCCTTGTCTCCAGCTGTCTGTTCAGAAGGTTaGAGCAGCCCTGCTGCATCCCCTGCCATCTGTGAG +
Preference number: 6 (lower is better)
Translates to: PMSLSPAVCSEG*SSPAASPAICE
Trigger: CTCACAGATGGCAGGGGATGCAGCAGGGCTGCTCCAACCTTCTGAACAGACAGCTGGAGACAAGGACATGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp GCCCTTTCAACTCATCAGGAAGTGCAGCAAAGCCTGTaGCAGCCAGCTGACCACACTCCTCCACTGACCTGG +
Preference number: 6 (lower is better)
Translates to: ALSTHQEVQQSL*QPADHTPPLTW
Trigger: CCAGGTCAGTGGAGGAGTGTGGTCAGCTGGCTGCCACAGGCTTTGCTGCACTTCCTGATGAGTTGAAAGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp CCTGTGAGTGCTGCGTTCGAAGTATCCAGGCCTCCTTaGGCAGCCCCTTTGACCACAGTAATGGCTCCTGTG +
Preference number: 6 (lower is better)
Translates to: PVSAAFEVSRPP*AAPLTTVMAPV
Trigger: CACAGGAGCCATTACTGTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp TCCCCGAGGGGTCTGTTGCTGTTTGTAAGTCCTTTGTaGAGGTGGAGCTGTGAGTGTGGGACACCAGGTTCC +
Preference number: 6 (lower is better)
Translates to: SPRGLLLFVSPL*RWSCECGTPGS
Trigger: GGAACCTGGTGTCCCACACTCACAGCTCCACCTCCACAAAGGACTTACAAACAGCAACAGACCCCTCGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp GAGTCCCCGAGGGGTCTGTTGCTGTTTGTAAGTCCTTaGTGGAGGTGGAGCTGTGAGTGTGGGACACCAGGT +
Preference number: 6 (lower is better)
Translates to: ESPRGLLLFVSP*WRWSCECGTPG
Trigger: ACCTGGTGTCCCACACTCACAGCTCCACCTCCACAAAGGACTTACAAACAGCAACAGACCCCTCGGGGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp GCCTGTGAGTGCTGCGTTCGAAGTATCCAGGCCTCCTaGAGCAGCCCCTTTGACCACAGTAATGGCTCCTGT +
Preference number: 6 (lower is better)
Translates to: ACECCVRSIQAS*SSPFDHSNGSC
Trigger: ACAGGAGCCATTACTGTGGTCAAAGGGGCTGCTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp GCGCAGGCAGATGAAGCCATACCAGACACAAGGGTTTaGGTGTCAGCTCTGGGCTCTGTGACATGCCCCAAG +
Preference number: 6 (lower is better)
Translates to: AQADEAIPDTRV*VSALGSVTCPK
Trigger: CTTGGGGCATGTCACAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTGGTATGGCTTCATCTGCCTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp TGCTTGCTGGTGTCCAGGCTTGTTTGCACTGTTCCTTaGGCCGTGTCCATTGTGCCTGTGAGTGCTGCGTTC +
Preference number: 6 (lower is better)
Translates to: CLLVSRLVCTVP*AVSIVPVSAAF
Trigger: GAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACAGTGCAAACAAGCCTGGACACCAGCAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 90 bp CTGGTAGCTGCGCAGGCAGATGAAGCCATACCAGACACAAGGGTTTaGGTGTCAGCTCTGGGCTCTGTGACATGCCCCAAGCCATATTTG +
Preference number: 6 (lower is better)
Translates to: LVAAQADEAIPDTRV*VSALGSVTCPKPYL
Trigger: CAAATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTGGTATGGCTTCATCTGCCTGCGCAGCTACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp TTTGCACTGTTCCTTTGGCCGTGTCCATTGTGCCTGTaGGTGCTGCGTTCGAAGTATCCAGGCCTCCTTGAG +
Preference number: 6 (lower is better)
Translates to: FALFLWPCPLCL*VLRSKYPGLLE
Trigger: CTCAAGGAGGCCTGGATACTTCGAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACAGTGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp CCTGTGTGGATGGCATTGGTGGCTACATTACCTGAATaGGCCAGCACAGAAGACTGGGTGTCTCTGGTGGTG +
Preference number: 6 (lower is better)
Translates to: PVWMALVATLPE*ASTEDWVSLVV
Trigger: CACCACCAGAGACACCCAGTCTTCTGTGCTGGCTCATTCAGGTAATGTAGCCACCAATGCCATCCACACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp TCAGCTCTGGGCTCTGTGACATGCCCCAAGCCATATTaGTCTGAGAAGCTGCTTGTCTCACAGCACAGGGAC +
Preference number: 6 (lower is better)
Translates to: SALGSVTCPKPY*SEKLLVSQHRD
Trigger: GTCCCTGTGCTGTGAGACAAGCAGCTTCTCAGACAAATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp CAGACACAAGGGTTTTGGTGTCAGCTCTGGGCTCTGTaGCATGCCCCAAGCCATATTTGTCTGAGAAGCTGC +
Preference number: 6 (lower is better)
Translates to: QTQGFWCQLWAL*HAPSHICLRSC
Trigger: GCAGCTTCTCAGACAAATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTGACACCAAAACCCTTGTGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp TTCTTTGAAGTGTCAAGACCTCCCTTGACAAGACCTTaGGCCACGCCCACTGCTCCCATCACACCTCCAGAT +
Preference number: 6 (lower is better)
Translates to: FFEVSRPPLTRP*ATPTAPITPPD
Trigger: ATCTGGAGGTGTGATGGGAGCAGTGGGCGTGGCCAAAGGTCTTGTCAAGGGAGGTCTTGACACTTCAAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 90 bp ATAAGCATATGCTTGCTGGTGTCCAGGCTTGTTTGCACTGTTCCTTaGGCCGTGTCCATTGTGCCTGTGAGTGCTGCGTTCGAAGTATCC +
Preference number: 6 (lower is better)
Translates to: ISICLLVSRLVCTVP*AVSIVPVSAAFEVS
Trigger: GGATACTTCGAACGCAGCACTCACAGGCACAATGGACACGGCCAAAGGAACAGTGCAAACAAGCCTGGACACCAGCAAGCATATGCTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp ACACCCCAGAGAAGGCATCTTCACTGCTGGTCACACTaGAACTTCCCATGTCCTTGTCTCCAGCTGTCTGTT +
Preference number: 6 (lower is better)
Translates to: TPQRRHLHCWSH*NFPCPCLQLSV
Trigger: AACAGACAGCTGGAGACAAGGACATGGGAAGTTTCAGTGTGACCAGCAGTGAAGATGCCTTCTCTGGGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp ACAAGGGTTTTGGTGTCAGCTCTGGGCTCTGTGACATaGCCCAAGCCATATTTGTCTGAGAAGCTGCTTGTC +
Preference number: 6 (lower is better)
Translates to: TRVLVSALGSVT*PKPYLSEKLLV
Trigger: GACAAGCAGCTTCTCAGACAAATATGGCTTGGGGCATGTCACAGAGCCCAGAGCTGACACCAAAACCCTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp CTGACTCTGAGACTGCCAGCTGAGCTTGTTCCTCAGTaGTCATGGGCTGAAAGATATCACCCAGCCCTTTCA +
Preference number: 6 (lower is better)
Translates to: LTLRLPAELVPQ*SWAERYHPALS
Trigger: TGAAAGGGCTGGGTGATATCTTTCAGCCCATGACAACTGAGGAACAAGCTCAGCTGGCAGTCTCAGAGTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS GCA 72 bp CCAGCACAGACAGTGTCCTTCATGCCTATAAGCATATaGTTGCTGGTGTCCAGGCTTGTTTGCACTGTTCCT +
Preference number: 6 (lower is better)
Translates to: PAQTVSFMPISI*LLVSRLVCTVP
Trigger: AGGAACAGTGCAAACAAGCCTGGACACCAGCAAGCATATGCTTATAGGCATGAAGGACACTGTCTGTGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp TCGGAACTGTGTGAACACCTGTGTGGATGGCATTGGTaGCTACATTACCTGAATGAGCCAGCACAGAAGACT +
Preference number: 6 (lower is better)
Translates to: SELCEHLCGWHW*LHYLNEPAQKT
Trigger: AGTCTTCTGTGCTGGCTCATTCAGGTAATGTAGCCACCAATGCCATCCACACAGGTGTTCACACAGTTCCGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp AGAGTGAACTCGGAACTGTGTGAACACCTGTGTGGATaGCATTGGTGGCTACATTACCTGAATGAGCCAGCA +
Preference number: 6 (lower is better)
Translates to: RVNSELCEHLCG*HWWLHYLNEPA
Trigger: TGCTGGCTCATTCAGGTAATGTAGCCACCAATGCCATCCACACAGGTGTTCACACAGTTCCGAGTTCACTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CCA 72 bp CTGAGACTGCCAGCTGAGCTTGTTCCTCAGTTGTCATaGGCTGAAAGATATCACCCAGCCCTTTCAACTCAT +
Preference number: 6 (lower is better)
Translates to: LRLPAELVPQLS*AERYHPALSTH
Trigger: ATGAGTTGAAAGGGCTGGGTGATATCTTTCAGCCCATGACAACTGAGGAACAAGCTCAGCTGGCAGTCTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS TCA 72 bp GAAGACTGGGTGTCTCTGGTGGTGTCTGTGTTCTTATaGATACCTTTAGCCATGTTCATGGCACTGGTAACC +
Preference number: 6 (lower is better)
Translates to: EDWVSLVVSVFL*IPLAMFMALVT
Trigger: GGTTACCAGTGCCATGAACATGGCTAAAGGTATTCATAAGAACACAGACACCACCAGAGACACCCAGTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2
CDS CAA 72 bp GCACATATAGAGTCCTTTGTGTCCATCAGGATGTTCTaGCTGGTATCCAGACCCATTTGCACTGTTTCTTTG +
Preference number: 6 (lower is better)
Translates to: AHIESFVSIRMF*LVSRPICTVSL
Trigger: CAAAGAAACAGTGCAAATGGGTCTGGATACCAGCAAGAACATCCTGATGGACACAAAGGACTCTATATGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000002908.8
ENSMUST00000190703.7
ENSMUST00000238734.2