RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLIN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024197

Ensembl transcript IDs: ENSMUST00000019726.8, ENSMUST00000233070.2

Found 145 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGAACAGACTGTGGGCATATTTGGCAGGCTCAGCTTGTCACACTaGCCCTTCTCCATACATCACAGAGACGGAGGGAAAATAGGCAGC +
Preference number: 1 (lower is better)
Translates to: GEQTVGIFGRLSLSH*PFSIHHRDGGKIGS
Trigger: GCTGCCTATTTTCCCTCCGTCTCTGTGATGTATGGAGAAGGGTCAGTGTGACAAGCTGAGCCTGCCAAATATGCCCACAGTCTGTTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 90 bp TCAAGGATGACCCTGAACTCCAGATCTTCTTGTCCCCACCTTCCCTaGGATCAAGGGGAACAGACTGTGGGCATATTTGGCAGGCTCAGC +
Preference number: 1 (lower is better)
Translates to: SRMTLNSRSSCPHLP*DQGEQTVGIFGRLS
Trigger: GCTGAGCCTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGACAAGAAGATCTGGAGTTCAGGGTCATCCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 90 bp GATCTTCTTGTCCCCACCTTCCCTGAGATCAAGGGGAACAGACTGTaGGCATATTTGGCAGGCTCAGCTTGTCACACTGACCCTTCTCCA +
Preference number: 1 (lower is better)
Translates to: DLLVPTFPEIKGNRL*AYLAGSACHTDPSP
Trigger: TGGAGAAGGGTCAGTGTGACAAGCTGAGCCTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGACAAGAAGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 90 bp AAAATAGGCAGCAGGCCCTTCCTGCTGTCCCCACAGGGTCACAAGTaGTCACGTCCAACATTCAAAGTGGGAAGACTCGCACTGTGCATA +
Preference number: 1 (lower is better)
Translates to: KIGSRPFLLSPQGHK*SRPTFKVGRLALCI
Trigger: TATGCACAGTGCGAGTCTTCCCACTTTGAATGTTGGACGTGATCACTTGTGACCCTGTGGGGACAGCAGGAAGGGCCTGCTGCCTATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 90 bp ATTGCAACATCCCAGCTGTCTATCCTGTCACAGTTGCTGGGTTCTTaGGCCAGGTATCAGGGTCTGTTAGAAAAGCTCTTGCTAGCCGGC +
Preference number: 1 (lower is better)
Translates to: IATSQLSILSQLLGS*ARYQGLLEKLLLAG
Trigger: GCCGGCTAGCAAGAGCTTTTCTAACAGACCCTGATACCTGGCCCAAGAACCCAGCAACTGTGACAGGATAGACAGCTGGGATGTTGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR GCA 90 bp GCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTaGGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAG +
Preference number: 1 (lower is better)
Translates to: AHKSLVCPCLDLTDY*GSPTPLVLHHTRFQ
Trigger: CTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 90 bp CCCCAGGATTTGAGGAACAGTGTACTCGGCCCTCACTTTCTCATCTaGAACAATTGCAACATCCCAGCTGTCTATCCTGTCACAGTTGCT +
Preference number: 1 (lower is better)
Translates to: PQDLRNSVLGPHFLI*NNCNIPAVYPVTVA
Trigger: AGCAACTGTGACAGGATAGACAGCTGGGATGTTGCAATTGTTTCAGATGAGAAAGTGAGGGCCGAGTACACTGTTCCTCAAATCCTGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 90 bp CAGCCATCTCAGAAACAAGTTCTATCTTGCTGGCAGGGTCAAGACTaGGTTCATGTTCCCAGGCCCCAGAATACAACTCCTATCCTGCTT +
Preference number: 1 (lower is better)
Translates to: QPSQKQVLSCWQGQD*VHVPRPQNTTPILL
Trigger: AAGCAGGATAGGAGTTGTATTCTGGGGCCTGGGAACATGAACTCAGTCTTGACCCTGCCAGCAAGATAGAACTTGTTTCTGAGATGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 90 bp GCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTaGCCTCTGATGCATATAAAATTTATTAAGGCAATACTGAGCCCC +
Preference number: 1 (lower is better)
Translates to: AAQLLGRQHTYTPST*PLMHIKFIKAILSP
Trigger: GGGGCTCAGTATTGCCTTAATAAATTTTATATGCATCAGAGGCCAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 90 bp CTGATGCATATAAAATTTATTAAGGCAATACTGAGCCCCAGGATTTaGGGAACAGTGTACTCGGCCCTCACTTTCTCATCTGAAACAATT +
Preference number: 1 (lower is better)
Translates to: LMHIKFIKAILSPRI*GTVYSALTFSSETI
Trigger: AATTGTTTCAGATGAGAAAGTGAGGGCCGAGTACACTGTTCCTCAAATCCTGGGGCTCAGTATTGCCTTAATAAATTTTATATGCATCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCACAGTTGCTGGGTTCTTaGGCCAGGTATCAGGGTCTG +
Preference number: 2 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSQLLGS*ARYQGL
Trigger: CAGACCCTGATACCTGGCCCAAGAACCCAGCAACTG...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR GCA 90 bp GCCACTGAACTCAATCTCTCCCAGACTCTGGACACTCATCTCCCCAAAGCAGGTCTATCCTGTCACAGTTaGTGGGTTCTTGGGCCAGGT +
Preference number: 2 (lower is better)
Translates to: ATELNLSQTLDTHLPKAGLSCHS*WVLGPG
Trigger: ACCTGGCCCAAGAACCCAGCAACTGTGACAGGATAG...ACCTGCTTTGGGGAGATGAGTGTCCAGAGTCTGGGAGAGATTGAGTTCAGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp GTAGTCAAGGATGACCCTGAACTCCAGATCTTCTTGTCCCCACCTTCCCTGAGATCCTGTCACAGTTGCTaGGTTCTTGGGCCAGGTATC +
Preference number: 2 (lower is better)
Translates to: VVKDDPELQIFLSPPSLRSCHSC*VLGPGI
Trigger: GATACCTGGCCCAAGAACCCAGCAACTGTGACAGGA...TCTCAGGGAAGGTGGGGACAAGAAGATCTGGAGTTCAGGGTCATCCTTGACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCAGACTGTGGGCATATTTaGCAGGCTCAGCTTGTCACA +
Preference number: 2 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSDCGHI*QAQLVT
Trigger: TGTGACAAGCTGAGCCTGCCAAATATGCCCACAGTC...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp GCCACTGAACTCAATCTCTCCCAGACTCTGGACACTCATCTCCCCAAAGCAGGTGCTCACCCACTCCTTTaGTCCTTCACCACACTAGAT +
Preference number: 2 (lower is better)
Translates to: ATELNLSQTLDTHLPKAGAHPLL*SFTTLD
Trigger: ATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGC...ACCTGCTTTGGGGAGATGAGTGTCCAGAGTCTGGGAGAGATTGAGTTCAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 90 bp AATTGCAACATCCCAGCTGTCTATCCTGTCACAGTTGCTGGGTTCTaGGGCCAGGTATCAGGGTCTGTTAGAAAAGCTCTTGCTAGCCGG +
Preference number: 2 (lower is better)
Translates to: NCNIPAVYPVTVAGF*GQVSGSVRKALASR
Trigger: CCGGCTAGCAAGAGCTTTTCTAACAGACCCTGATACCTGGCCCAAGAACCCAGCAACTGTGACAGGATAGACAGCTGGGATGTTGCAATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 90 bp GGAGACAGTTTCCTGAGTCCAGCCATCTCAGAAACAAGTTCTATCTaGCTGGCAGGGTCAAGACTGAGTTCATGTTCCCAGGCCCCAGAA +
Preference number: 2 (lower is better)
Translates to: GDSFLSPAISETSSI*LAGSRLSSCSQAPE
Trigger: TTCTGGGGCCTGGGAACATGAACTCAGTCTTGACCCTGCCAGCAAGATAGAACTTGTTTCTGAGATGGCTGGACTCAGGAAACTGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR TCA 90 bp GCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCGGCTCAAGTGCTGACACAGGATaGCAGACTAGTGCTATCACT +
Preference number: 2 (lower is better)
Translates to: AHKSLVCPCLDLTDYCGSSADTG*QTSAIT
Trigger: AGTGATAGCACTAGTCTGTCATCCTGTGTCAGCACT...TGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR TCA 90 bp AGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTACCTGACTCAAGGACCCTaGAACCAGGTGACCCAGATA +
Preference number: 2 (lower is better)
Translates to: STLWLSSDTPEEGIRSHYLTQGP*NQVTQI
Trigger: TATCTGGGTCACCTGGTTTCAGGGTCCTTGAGTCAG...GTAATGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp TGTCTGTTAGCCAGTGAAGGCTGTAAGGAAGGAAGATGCTGTTCTCCAGTTATCGTGCAATTGGACTGTTaGGAAAAGCAGTCAAGCCAG +
Preference number: 2 (lower is better)
Translates to: CLLASEGCKEGRCCSPVIVQLDC*EKQSSQ
Trigger: CTGGCTTGACTGCTTTTCCCAACAGTCCAATTGCAC...GATAACTGGAGAACAGCATCTTCCTTCCTTACAGCCTTCACTGGCTAACAGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp TTGTCCCCACCTTCCCTGAGATCAAGGGGAACAGACTGTGGGCATATTTGGCAGTATACACCATCCACTTaGCCTCTGATGCATATAAAA +
Preference number: 2 (lower is better)
Translates to: LSPPSLRSRGTDCGHIWQYTPST*PLMHIK
Trigger: TTTTATATGCATCAGAGGCCAAGTGGATGGTGTATA...CTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 90 bp CACTTTACCACAGCAGGCAGCTCTCCTGCCCCGAGTTTTGCTGTTTaGAAACATAGTCTCAAAGTAGCCCAGGTTAGTTTCAAACTTACT +
Preference number: 2 (lower is better)
Translates to: HFTTAGSSPAPSFAV*KHSLKVAQVSFKLT
Trigger: AGTAAGTTTGAAACTAACCTGGGCTACTTTGAGACTATGTTTCAAAACAGCAAAACTCGGGGCAGGAGAGCTGCCTGCTGTGGTAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp GAAGGCTGTAAGGAAGGAAGATGCTGTTCTCCAGTTATCCAAACTAAAGCACACGTCCAACATTCAAAGTaGGAAGACTCGCACTGTGCA +
Preference number: 2 (lower is better)
Translates to: EGCKEGRCCSPVIQTKAHVQHSK*EDSHCA
Trigger: TGCACAGTGCGAGTCTTCCCACTTTGAATGTTGGAC...GTGTGCTTTAGTTTGGATAACTGGAGAACAGCATCTTCCTTCCTTACAGCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR TCA 90 bp AGACGGACTTCTCCACATTTTCATGCTTACATATGCACACGTATTTGTGTAAGTCTATCACTGAATTTGTaGTGTGGCAGCCGGGCTTTG +
Preference number: 2 (lower is better)
Translates to: RRTSPHFHAYICTRICVSLSLNL*CGSRAL
Trigger: CAAAGCCCGGCTGCCACATCACAAATTCAGTGATAG...ACTTACACAAATACGTGTGCATATGTAAGCATGAAAATGTGGAGAAGTCCGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CCA 90 bp AGACGGACTTCTCCACATTTTCATGCTTACATATGCACACGTATTTGTGTAAGTAAGGGGAACAGACTGTaGGCATATTTGGCAGGCTCA +
Preference number: 2 (lower is better)
Translates to: RRTSPHFHAYICTRICVSKGNRL*AYLAGS
Trigger: TGAGCCTGCCAAATATGCCCACAGTCTGTTCCCCTT...ACTTACACAAATACGTGTGCATATGTAAGCATGAAAATGTGGAGAAGTCCGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 72 bp GTCCCCACCTTCCCTGAGATCAAGGGGAACAGACTGTaGGCATATTTGGCAGGCTCAGCTTGTCACACTGAC +
Preference number: 3 (lower is better)
Translates to: VPTFPEIKGNRL*AYLAGSACHTD
Trigger: GTCAGTGTGACAAGCTGAGCCTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 72 bp TGCCTCATGCCACTGAACTCAATCTCTCCCAGACTCTaGACACTCATCTCCCCAAAGCAGGTAGCAGACGGA +
Preference number: 3 (lower is better)
Translates to: CLMPLNSISPRL*TLISPKQVADG
Trigger: TCCGTCTGCTACCTGCTTTGGGGAGATGAGTGTCCAGAGTCTGGGAGAGATTGAGTTCAGTGGCATGAGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 72 bp AAAAGCAGCAGTTCCCAGAGGACTATGACTGGAAGATaGGGTGCACAAAGGAGAACCACCCCACCCTCTTGC +
Preference number: 3 (lower is better)
Translates to: KSSSSQRTMTGR*GAQRRTTPPSC
Trigger: GCAAGAGGGTGGGGTGGTTCTCCTTTGTGCACCTCATCTTCCAGTCATAGTCCTCTGGGAACTGCTGCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 72 bp TCCCTGAGATCAAGGGGAACAGACTGTGGGCATATTTaGCAGGCTCAGCTTGTCACACTGACCCTTCTCCAT +
Preference number: 3 (lower is better)
Translates to: SLRSRGTDCGHI*QAQLVTLTLLH
Trigger: ATGGAGAAGGGTCAGTGTGACAAGCTGAGCCTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp CCATCCTATAAAAAGCGTCGTGCAGTCTCTCATCAGGGTTCAGATCCCCAACTGGAACCTGTGACCCTCTaGCCTCTATACCACAGTGCT +
Preference number: 3 (lower is better)
Translates to: PSYKKRRAVSHQGSDPQLEPVTL*PLYHSA
Trigger: AGCACTGTGGTATAGAGGCAAGAGGGTCACAGGTTC...CAGTTGGGGATCTGAACCCTGATGAGAGACTGCACGACGCTTTTTATAGGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 72 bp ACTGTGGGCATATTTGGCAGGCTCAGCTTGTCACACTaGCCCTTCTCCATACATCACAGAGACGGAGGGAAA +
Preference number: 3 (lower is better)
Translates to: TVGIFGRLSLSH*PFSIHHRDGGK
Trigger: TTTCCCTCCGTCTCTGTGATGTATGGAGAAGGGTCAGTGTGACAAGCTGAGCCTGCCAAATATGCCCACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 72 bp GGGACCTCTGGAAGAGTAGCCAGTGCTCTTAGCCACTaGGCCATCTCTCCAGCCCTATGGCATGTTTTAAAA +
Preference number: 3 (lower is better)
Translates to: GTSGRVASALSH*AISPALWHVLK
Trigger: TTTTAAAACATGCCATAGGGCTGGAGAGATGGCTCAGTGGCTAAGAGCACTGGCTACTCTTCCAGAGGTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR GCA 72 bp TCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTaGGGCTCACCCACTCCTTTGGTCCTTCACCACACT +
Preference number: 3 (lower is better)
Translates to: SLVCPCLDLTDY*GSPTPLVLHHT
Trigger: AGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 72 bp TCCCAGCTGTCTATCCTGTCACAGTTGCTGGGTTCTTaGGCCAGGTATCAGGGTCTGTTAGAAAAGCTCTTG +
Preference number: 3 (lower is better)
Translates to: SQLSILSQLLGS*ARYQGLLEKLL
Trigger: CAAGAGCTTTTCTAACAGACCCTGATACCTGGCCCAAGAACCCAGCAACTGTGACAGGATAGACAGCTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp GCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCGGCTCAGGACCTGTTGTGCAATaGGACTGTTGGGAAAAGCAG +
Preference number: 3 (lower is better)
Translates to: AHKSLVCPCLDLTDYCGSGPVVQ*DCWEKQ
Trigger: CTGCTTTTCCCAACAGTCCAATTGCACAACAGGTCC...TGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp AGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTACGGCTCACCCACTCCTTaGGTCCTTCACCACACTAGA +
Preference number: 3 (lower is better)
Translates to: STLWLSSDTPEEGIRSHYGSPTP*VLHHTR
Trigger: TCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCC...GTAATGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCAAAACAAGAAAAGCTCTaGCTATTGTGGGCCATGATG +
Preference number: 3 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSKQEKL*LLWAMM
Trigger: CATCATGGCCCACAATAGCAAGAGCTTTTCTTGTTT...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp TTAGCCAGTGAAGGCTGTAAGGAAGGAAGATGCTGTTCTCCAGTTATCCAAACTACAGTTGCTGGGTTCTaGGGCCAGGTATCAGGGTCT +
Preference number: 3 (lower is better)
Translates to: LASEGCKEGRCCSPVIQTTVAGF*GQVSGS
Trigger: AGACCCTGATACCTGGCCCAAGAACCCAGCAACTGT...AGTTTGGATAACTGGAGAACAGCATCTTCCTTCCTTACAGCCTTCACTGGCTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp TTGTCCCCACCTTCCCTGAGATCAAGGGGAACAGACTGTGGGCATATTTGGCAGTCTCATCTGAAACAATaGCAACATCCCAGCTGTCTA +
Preference number: 3 (lower is better)
Translates to: LSPPSLRSRGTDCGHIWQSHLKQ*QHPSCL
Trigger: TAGACAGCTGGGATGTTGCAATTGTTTCAGATGAGA...CTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 72 bp TGTGAAAACAGAAAAGCAGCAGTTCCCAGAGGACTATaGCTGGAAGATGAGGTGCACAAAGGAGAACCACCC +
Preference number: 3 (lower is better)
Translates to: CENRKAAVPRGL*LEDEVHKGEPP
Trigger: GGGTGGTTCTCCTTTGTGCACCTCATCTTCCAGTCATAGTCCTCTGGGAACTGCTGCTTTTCTGTTTTCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR GCA 72 bp ATGTCTCATTCAGACTCAGTAGGGGAGGACCTGTTGTaGAATTGGACTGTTGGGAAAAGCAGTCAAGCCAGA +
Preference number: 3 (lower is better)
Translates to: MSHSDSVGEDLL*NWTVGKSSQAR
Trigger: TCTGGCTTGACTGCTTTTCCCAACAGTCCAATTGCACAACAGGTCCTCCCCTACTGAGTCTGAATGAGACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR-3UTR CAA 90 bp TATTTTACGTATGAGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATAGACTGTGGGCATATTaGGCAGGCTCAGCTTGTCAC +
Preference number: 3 (lower is better)
Translates to: YFTYEYTLALFRYTRRGHRLWAY*AGSACH
Trigger: GTGACAAGCTGAGCCTGCCAAATATGCCCACAGTCT...ATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACTCATACGTAAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR GCA 72 bp ATCCAAACTAAAGCACACAAGTCGTTAGTGTGTCCCTaGCTTGATTTAACTGACTACTGCGGCTCACCCACT +
Preference number: 3 (lower is better)
Translates to: IQTKAHKSLVCP*LDLTDYCGSPT
Trigger: AGTGGGTGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGCTTTAGTTTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR TCA 72 bp ATAAAATTTATTAAGGCAATACTGAGCCCCAGGATTTaGGGAACAGTGTACTCGGCCCTCACTTTCTCATCT +
Preference number: 3 (lower is better)
Translates to: IKFIKAILSPRI*GTVYSALTFSS
Trigger: AGATGAGAAAGTGAGGGCCGAGTACACTGTTCCTCAAATCCTGGGGCTCAGTATTGCCTTAATAAATTTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR GCA 72 bp AGCAGACGGACTTCTCCACATTTTCATGCTTACATATaGACACGTATTTGTGTAAGTTGGAGGTTGACATCA +
Preference number: 3 (lower is better)
Translates to: SRRTSPHFHAYI*TRICVSWRLTS
Trigger: TGATGTCAACCTCCAACTTACACAAATACGTGTGCATATGTAAGCATGAAAATGTGGAGAAGTCCGTCTGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CCA 72 bp TTTCATGCTTACATATGCACACGTATTTGTGTAAGTTaGAGGTTGACATCAAGTGTTTGCTCTTGGTCACAT +
Preference number: 3 (lower is better)
Translates to: FHAYICTRICVS*RLTSSVCSWSH
Trigger: ATGTGACCAAGAGCAAACACTTGATGTCAACCTCCAACTTACACAAATACGTGTGCATATGTAAGCATGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGCGGGCCTGCTGTGCCTaGTCCCTGACGTGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLRACCA*SLTWLG
Trigger: GCCCAGCCACGTCAGGGAGCAGGCACAGCAGGCCCG...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp CTGACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGGCAAGCCCTGGATGCTaGCCCCCAGGGCCACACACA +
Preference number: 4 (lower is better)
Translates to: LTTAAHPLLWSFTTLDSRASPGC*PPGPHT
Trigger: TGTGTGTGGCCCTGGGGGCCAGCATCCAGGGCTTGC...CCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGTGGCTGGGCAAGCCCTaGATGCTGGCCCCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLWLGKP*MLAPRA
Trigger: GGCCCTGGGGGCCAGCATCCAGGGCTTGCCCAGCCA...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp GTAGTCAAGGATGACCCTGAACTCCAGATCTTCTTGTCCCCACCTTCCCTGAGATGGGCAAGCCCTGGATaGTGGCCCCCAGGGCCACAC +
Preference number: 4 (lower is better)
Translates to: VVKDDPELQIFLSPPSLRWASPG*WPPGPH
Trigger: GTGTGGCCCTGGGGGCCAGCATCCAGGGCTTGCCCA...TCTCAGGGAAGGTGGGGACAAGAAGATCTGGAGTTCAGGGTCATCCTTGACTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCAGGTCGTTCACCTGGCTaGGGGCCTGCTGTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSGRSPG*GPAVPA
Trigger: AGCAGGCACAGCAGGCCCGCAGCCAGGTGAACGACC...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCACATCCACCGCTCCTGTaGCCCGGGTGGCCACTGTTT +
Preference number: 4 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSHPPLL*PGWPLF
Trigger: AAACAGTGGCCACCCGGGTCACAGGAGCGGTGGATG...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp TTGTCCCCACCTTCCCTGAGATCAAGGGGAACAGACTGTGGGCATATTTGGCAGCCGGAGAAGGTGGCCTaGAGGTCGTTCACCTGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPPSLRSRGTDCGHIWQPEKVA*RSFTWL
Trigger: CAGCCAGGTGAACGACCTTCAGGCCACCTTCTCCGG...CTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp TTGTCCCCACCTTCCCTGAGATCAAGGGGAACAGACTGTGGGCATATTTGGCAGGGCAAGAACGCCGGCTaGGAGGTCCTGGAAGGAGTG +
Preference number: 4 (lower is better)
Translates to: LSPPSLRSRGTDCGHIWQGKNAG*EVLEGV
Trigger: CACTCCTTCCAGGACCTCTCAGCCGGCGTTCTTGCC...CTGCCAAATATGCCCACAGTCTGTTCCCCTTGATCTCAGGGAAGGTGGGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCAGGACAGGATGGGCTGTaGTGTGCTGACAGCGGCCGT +
Preference number: 4 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSGQDGL*CADSGR
Trigger: ACGGCCGCTGTCAGCACAGCACAGCCCATCCTGTCC...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCACCCTCCCCCAGCCTCTaGTCCACACCCTGTTTCACG +
Preference number: 4 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSPSPSL*STPCFT
Trigger: CGTGAAACAGGGTGTGGACCAGAGGCTGGGGGAGGG...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp GACCCTGAACTCCAGATCTTCTTGTCCCCACCTTCCCTGAGATCAAGGGGAACACTGCAGCGTCTCCTGTaGCTTCTGCCTGGCATTCTG +
Preference number: 4 (lower is better)
Translates to: DPELQIFLSPPSLRSRGTLQRLL*LLPGIL
Trigger: CAGAATGCCAGGCAGAAGGCACAGGAGACGCTGCAG...TGTTCCCCTTGATCTCAGGGAAGGTGGGGACAAGAAGATCTGGAGTTCAGGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGCTGAGCCACATCTGGTaGAGCTTCTCCTGCCCCTCC +
Preference number: 4 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLLSHIW*SFSCPS
Trigger: GGAGGGGCAGGAGAAGCTGCACCAGATGTGGCTCAG...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp AGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTACGCTGCGGGCCTGCTGTaGCTGCTCCCTGACGTGGCT +
Preference number: 4 (lower is better)
Translates to: STLWLSSDTPEEGIRSHYAAGLL*LLPDVA
Trigger: AGCCACGTCAGGGAGCAGGCACAGCAGGCCCGCAGC...GTAATGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp AAGATGAGGTGCACAAAGGAGAACCACCCCACCCTCTaGCTGGGGAGTCTAGGCAGGAGTATCTGCCTCATG +
Preference number: 4 (lower is better)
Translates to: KMRCTKENHPTL*LGSLGRSICLM
Trigger: CATGAGGCAGATACTCCTGCCTAGACTCCCCAGCAAGAGGGTGGGGTGGTTCTCCTTTGTGCACCTCATCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGCATCGCACACAGTCCTaGCGTGGGGGTAGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLHRTQS*RGGSSP
Trigger: AGGAGAACTACCCCCACGTCAGGACTGTGTGCGATG...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp GCCACTGAACTCAATCTCTCCCAGACTCTGGACACTCATCTCCCCAAAGCAGGTTCCACCACGCTGGGCTaGACAACAGGTTCCTCCATA +
Preference number: 4 (lower is better)
Translates to: ATELNLSQTLDTHLPKAGSTTLG*TTGSSI
Trigger: TATGGAGGAACCTGTTGTGCAGCCCAGCGTGGTGGA...ACCTGCTTTGGGGAGATGAGTGTCCAGAGTCTGGGAGAGATTGAGTTCAGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp CTGACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGGAGCCCATGACTGATTaGACACCGCTGGTCATTGCT +
Preference number: 4 (lower is better)
Translates to: LTTAAHPLLWSFTTLDSREPMTD*TPLVIA
Trigger: AGCAATGACCAGCGGTGTCCAATCAGTCATGGGCTC...CCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGTCTTCTGGTTCCAGCTaGGCCACATCTGGTGCAGCT +
Preference number: 4 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLSSGSS*ATSGAA
Trigger: AGCTGCACCAGATGTGGCTCAGCTGGAACCAGAAGA...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGCCTGGAAGGAGTGAATaGCGGAGAAGGTGGCCTGAA +
Preference number: 4 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLPGRSE*RRRWPE
Trigger: TTCAGGCCACCTTCTCCGGCATTCACTCCTTCCAGG...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp GACCCTGAACTCCAGATCTTCTTGTCCCCACCTTCCCTGAGATCAAGGGGAACAATGCTCTGCAGCTGCTaGGTGATGTCCCTGAACATG +
Preference number: 4 (lower is better)
Translates to: DPELQIFLSPPSLRSRGTMLCSC*VMSLNM
Trigger: CATGTTCAGGGACATCACCCAGCAGCTGCAGAGCAT...TGTTCCCCTTGATCTCAGGGAAGGTGGGGACAAGAAGATCTGGAGTTCAGGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp ACTAAAGCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCGCCTGCTCCCTGACGTaGCTGGGCAAGCCCTGGATG +
Preference number: 4 (lower is better)
Translates to: TKAHKSLVCPCLDLTDYCACSLT*LGKPWM
Trigger: CATCCAGGGCTTGCCCAGCCACGTCAGGGAGCAGGC...GCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGCTTTAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp CCATCCTATAAAAAGCGTCGTGCAGTCTCTCATCAGGGTTCAGATCCCCAACTGGTCTCCTGTGCCTTCTaGCTGGCATTCTGCAGCTTG +
Preference number: 4 (lower is better)
Translates to: PSYKKRRAVSHQGSDPQLVSCAF*LAFCSL
Trigger: CAAGCTGCAGAATGCCAGGCAGAAGGCACAGGAGAC...CAGTTGGGGATCTGAACCCTGATGAGAGACTGCACGACGCTTTTTATAGGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp GCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCGGCTCAAGCACACTTGTTAGCTaGTGCAGCGTCTCCTGTGCC +
Preference number: 4 (lower is better)
Translates to: AHKSLVCPCLDLTDYCGSSTLVS*CSVSCA
Trigger: GGCACAGGAGACGCTGCAGCAGCTAACAAGTGTGCT...TGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp CTCAGAAACAAGTTCTATCTTGCTGGCAGGGTCAAGACTGAGTTCATGTTCCCATCGGCTGCTGGAGGATaGGCAGGCTTTCCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: LRNKFYLAGRVKTEFMFPSAAGG*AGFPAV
Trigger: GACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGA...TGGGAACATGAACTCAGTCTTGACCCTGCCAGCAAGATAGAACTTGTTTCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp CCATCCTATAAAAAGCGTCGTGCAGTCTCTCATCAGGGTTCAGATCCCCAACTGTCCTGTGGGGTCTTCTaGTTCCAGCTGAGCCACATC +
Preference number: 4 (lower is better)
Translates to: PSYKKRRAVSHQGSDPQLSCGVF*FQLSHI
Trigger: GATGTGGCTCAGCTGGAACCAGAAGACCCCACAGGA...CAGTTGGGGATCTGAACCCTGATGAGAGACTGCACGACGCTTTTTATAGGATGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp ACTAAAGCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCTCCTGTCGCTGCTGCTaGAGTGAGGCCATGTCCGAG +
Preference number: 4 (lower is better)
Translates to: TKAHKSLVCPCLDLTDYCSCRCC*SEAMSE
Trigger: CTCGGACATGGCCTCACTGCAGCAGCAGCGACAGGA...GCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp GAAGGCTGTAAGGAAGGAAGATGCTGTTCTCCAGTTATCCAAACTAAAGCACACTGCTCCTGTCGCTGCTaGTGCAGTGAGGCCATGTCC +
Preference number: 4 (lower is better)
Translates to: EGCKEGRCCSPVIQTKAHCSCRC*CSEAMS
Trigger: GGACATGGCCTCACTGCAGCAGCAGCGACAGGAGCA...GTGTGCTTTAGTTTGGATAACTGGAGAACAGCATCTTCCTTCCTTACAGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp AGACGGACTTCTCCACATTTTCATGCTTACATATGCACACGTATTTGTGTAAGTGCCCGGGCCTCCACCTaGTCTGGCTTAGCTGGGTCC +
Preference number: 4 (lower is better)
Translates to: RRTSPHFHAYICTRICVSARAST*SGLAGS
Trigger: GGACCCAGCTAAGCCAGAGCAGGTGGAGGCCCGGGC...ACTTACACAAATACGTGTGCATATGTAAGCATGAAAATGTGGAGAAGTCCGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp AGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTACGCCACACACATGCTCTaGAGCTGCTGGGTGATGTCC +
Preference number: 4 (lower is better)
Translates to: STLWLSSDTPEEGIRSHYATHML*SCWVMS
Trigger: GGACATCACCCAGCAGCTGCAGAGCATGTGTGTGGC...GTAATGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp GACCCTGAACTCCAGATCTTCTTGTCCCCACCTTCCCTGAGATCAAGGGGAACACTTCGCACTAGACACTaGGCTAGATACCATTTCTTG +
Preference number: 4 (lower is better)
Translates to: DPELQIFLSPPSLRSRGTLRTRH*ARYHFL
Trigger: CAAGAAATGGTATCTAGCTCAGTGTCTAGTGCGAAG...TGTTCCCCTTGATCTCAGGGAAGGTGGGGACAAGAAGATCTGGAGTTCAGGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp GTAAGTTTTCTCAGTTTCTACCGCAAACCAAACAACTCCAAGCACTTTACCACATCGCTGCTGCTGCAGTaGGGCCATGTCCGAGTCCTC +
Preference number: 4 (lower is better)
Translates to: VSFLSFYRKPNNSKHFTTSLLLQ*GHVRVL
Trigger: GAGGACTCGGACATGGCCTCACTGCAGCAGCAGCGA...TGTGGTAAAGTGCTTGGAGTTGTTTGGTTTGCGGTAGAAACTGAGAAAACTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR GCA 90 bp TTAGCCAGTGAAGGCTGTAAGGAAGGAAGATGCTGTTCTCCAGTTATCCAAACTACCTTCTCAGTCGGCTaGTGGAGGATGGGCAGGCTT +
Preference number: 4 (lower is better)
Translates to: LASEGCKEGRCCSPVIQTTFSVG*WRMGRL
Trigger: AAGCCTGCCCATCCTCCAGCAGCCGACTGAGAAGGT...AGTTTGGATAACTGGAGAACAGCATCTTCCTTCCTTACAGCCTTCACTGGCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp ACTAAAGCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCCCTGTGCCTTCTGCCTaGCATTCTGCAGCTTGCCGA +
Preference number: 4 (lower is better)
Translates to: TKAHKSLVCPCLDLTDYCPVPSA*HSAACR
Trigger: TCGGCAAGCTGCAGAATGCCAGGCAGAAGGCACAGG...GCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGCTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp GTAAGTTTTCTCAGTTTCTACCGCAAACCAAACAACTCCAAGCACTTTACCACAGGCCCACCAGCCACATaGCTGGAGTGTTCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: VSFLSFYRKPNNSKHFTTGPPAT*LECSGP
Trigger: TGGCCCAGAACACTCCAGCCATGTGGCTGGTGGGCC...TGTGGTAAAGTGCTTGGAGTTGTTTGGTTTGCGGTAGAAACTGAGAAAACTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp CACATGTCTCATTCAGACTCAGTAGGGGAGGACCTGTaGTGCAATTGGACTGTTGGGAAAAGCAGTCAAGCC +
Preference number: 4 (lower is better)
Translates to: HMSHSDSVGEDL*CNWTVGKSSQA
Trigger: GGCTTGACTGCTTTTCCCAACAGTCCAATTGCACAACAGGTCCTCCCCTACTGAGTCTGAATGAGACATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp ATCCCAGCTGTCTATCCTGTCACAGTTGCTGGGTTCTaGGGCCAGGTATCAGGGTCTGTTAGAAAAGCTCTT +
Preference number: 4 (lower is better)
Translates to: IPAVYPVTVAGF*GQVSGSVRKAL
Trigger: AAGAGCTTTTCTAACAGACCCTGATACCTGGCCCAAGAACCCAGCAACTGTGACAGGATAGACAGCTGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR TCA 90 bp GTAAGTTTTCTCAGTTTCTACCGCAAACCAAACAACTCCAAGCACTTTACCACACCACACGTGAGCCCATaGCTGATTGGACACCGCTGG +
Preference number: 4 (lower is better)
Translates to: VSFLSFYRKPNNSKHFTTPHVSP*LIGHRW
Trigger: CCAGCGGTGTCCAATCAGTCATGGGCTCACGTGTGG...TGTGGTAAAGTGCTTGGAGTTGTTTGGTTTGCGGTAGAAACTGAGAAAACTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp GAAGGCTGTAAGGAAGGAAGATGCTGTTCTCCAGTTATCCAAACTAAAGCACACGAATGCCGGAGAAGGTaGCCTGAAGGTCGTTCACCT +
Preference number: 4 (lower is better)
Translates to: EGCKEGRCCSPVIQTKAHECRRR*PEGRSP
Trigger: AGGTGAACGACCTTCAGGCCACCTTCTCCGGCATTC...GTGTGCTTTAGTTTGGATAACTGGAGAACAGCATCTTCCTTCCTTACAGCCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp CAGTGTACTCGGCCCTCACTTTCTCATCTGAAACAATaGCAACATCCCAGCTGTCTATCCTGTCACAGTTGC +
Preference number: 4 (lower is better)
Translates to: QCTRPSLSHLKQ*QHPSCLSCHSC
Trigger: GCAACTGTGACAGGATAGACAGCTGGGATGTTGCAATTGTTTCAGATGAGAAAGTGAGGGCCGAGTACACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp TTCCTGAGTCCAGCCATCTCAGAAACAAGTTCTATCTaGCTGGCAGGGTCAAGACTGAGTTCATGTTCCCAG +
Preference number: 4 (lower is better)
Translates to: FLSPAISETSSI*LAGSRLSSCSQ
Trigger: CTGGGAACATGAACTCAGTCTTGACCCTGCCAGCAAGATAGAACTTGTTTCTGAGATGGCTGGACTCAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp GTAAGTTTTCTCAGTTTCTACCGCAAACCAAACAACTCCAAGCACTTTACCACATTCTCAGTCGGCTGCTaGAGGATGGGCAGGCTTTCC +
Preference number: 4 (lower is better)
Translates to: VSFLSFYRKPNNSKHFTTFSVGC*RMGRLS
Trigger: GGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAA...TGTGGTAAAGTGCTTGGAGTTGTTTGGTTTGCGGTAGAAACTGAGAAAACTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp AGACGGACTTCTCCACATTTTCATGCTTACATATGCACACGTATTTGTGTAAGTGGCCTCCACCTGCTCTaGCTTAGCTGGGTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: RRTSPHFHAYICTRICVSGLHLL*LSWVLF
Trigger: GAAAAGGACCCAGCTAAGCCAGAGCAGGTGGAGGCC...ACTTACACAAATACGTGTGCATATGTAAGCATGAAAATGTGGAGAAGTCCGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp TCATTCAGACTCAGTAGGGGAGGACCTGTTGTGCAATaGGACTGTTGGGAAAAGCAGTCAAGCCAGATAGAT +
Preference number: 4 (lower is better)
Translates to: SFRLSRGGPVVQ*DCWEKQSSQID
Trigger: ATCTATCTGGCTTGACTGCTTTTCCCAACAGTCCAATTGCACAACAGGTCCTCCCCTACTGAGTCTGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CCA 90 bp TATTTTACGTATGAGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATTGGTCATTGCTGACTTaGTCTTGTCCACGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: YFTYEYTLALFRYTRRGHWSLLT*SCPRCS
Trigger: AGAACAGCGTGGACAAGACCAAGTCAGCAATGACCA...ATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACTCATACGTAAAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp TTTTCATGCTTACATATGCACACGTATTTGTGTAAGTaGGAGGTTGACATCAAGTGTTTGCTCTTGGTCACA +
Preference number: 4 (lower is better)
Translates to: FSCLHMHTYLCK*EVDIKCLLLVT
Trigger: TGTGACCAAGAGCAAACACTTGATGTCAACCTCCAACTTACACAAATACGTGTGCATATGTAAGCATGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
3UTR CAA 72 bp TTCTCCACATTTTCATGCTTACATATGCACACGTATTaGTGTAAGTTGGAGGTTGACATCAAGTGTTTGCTC +
Preference number: 4 (lower is better)
Translates to: FSTFSCLHMHTY*CKLEVDIKCLL
Trigger: GAGCAAACACTTGATGTCAACCTCCAACTTACACAAATACGTGTGCATATGTAAGCATGAAAATGTGGAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 90 bp AAGCCCTGGATGCTGGCCCCCAGGGCCACACACATGCTCTGCAGCTaGTGGGTGATGTCCCTGAACATGCTGAGTGCCCGGGCCTCCACC +
Preference number: 5 (lower is better)
Translates to: KPWMLAPRATHMLCS*WVMSLNMLSARAST
Trigger: GGTGGAGGCCCGGGCACTCAGCATGTTCAGGGACATCACCCAGCAGCTGCAGAGCATGTGTGTGGCCCTGGGGGCCAGCATCCAGGGCTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS TCA 90 bp CCGGGCTCTGGCTATGCGCTCCCGAGTTTGGGCAAGAACGCCGGCTaGGAGGTCCTGGAAGGAGTGAATGCCGGAGAAGGTGGCCTGAAG +
Preference number: 5 (lower is better)
Translates to: PGSGYALPSLGKNAG*EVLEGVNAGEGGLK
Trigger: CTTCAGGCCACCTTCTCCGGCATTCACTCCTTCCAGGACCTCTCAGCCGGCGTTCTTGCCCAAACTCGGGAGCGCATAGCCAGAGCCCGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 90 bp ATTCCAGGAGCGAAGGGGCCCACCAGCCACATGGCTGGAGTGTTCTaGGCCACGTACTCCACAGTGTTGTCTAGGGCCTCCCGGGCTCTG +
Preference number: 5 (lower is better)
Translates to: IPGAKGPTSHMAGVF*ATYSTVLSRASRAL
Trigger: CAGAGCCCGGGAGGCCCTAGACAACACTGTGGAGTACGTGGCCCAGAACACTCCAGCCATGTGGCTGGTGGGCCCCTTCGCTCCTGGAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 90 bp TGGACACCGCTGGTCATTGCTGACTTGGTCTTGTCCACGCTGTTCTaGACAGCCCCGAGGGTCACATCCACCGCTCCTGTGACCCGGGTG +
Preference number: 5 (lower is better)
Translates to: WTPLVIADLVLSTLF*TAPRVTSTAPVTRV
Trigger: CACCCGGGTCACAGGAGCGGTGGATGTGACCCTCGGGGCTGTGCAGAACAGCGTGGACAAGACCAAGTCAGCAATGACCAGCGGTGTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 90 bp GAGTTTGGGCAAGAACGCCGGCTGAGAGGTCCTGGAAGGAGTGAATaGCGGAGAAGGTGGCCTGAAGGTCGTTCACCTGGCTGCGGGCCT +
Preference number: 5 (lower is better)
Translates to: EFGQERRLRGPGRSE*RRRWPEGRSPGCGP
Trigger: AGGCCCGCAGCCAGGTGAACGACCTTCAGGCCACCTTCTCCGGCATTCACTCCTTCCAGGACCTCTCAGCCGGCGTTCTTGCCCAAACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 90 bp AGTCTGTCCAGCCCTCGGTGTGCATACTCACTGGCCGTCGCAATCTaGGGCTCCAGCTTGGACAGGATGGGCTGTGCTGTGCTGACAGCG +
Preference number: 5 (lower is better)
Translates to: SLSSPRCAYSLAVAI*GSSLDRMGCAVLTA
Trigger: CGCTGTCAGCACAGCACAGCCCATCCTGTCCAAGCTGGAGCCCCAGATTGCGACGGCCAGTGAGTATGCACACCGAGGGCTGGACAGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CCA 90 bp GCAGGCTTTCCTGCAGTCTGTCCAGCCCTCGGTGTGCATACTCACTaGCCGTCGCAATCTGGGGCTCCAGCTTGGACAGGATGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: AGFPAVCPALGVHTH*PSQSGAPAWTGWAV
Trigger: CACAGCCCATCCTGTCCAAGCTGGAGCCCCAGATTGCGACGGCCAGTGAGTATGCACACCGAGGGCTGGACAGACTGCAGGAAAGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS GCA 90 bp GCCAAAACCTTCTCAGTCGGCTGCTGGAGGATGGGCAGGCTTTCCTaGAGTCTGTCCAGCCCTCGGTGTGCATACTCACTGGCCGTCGCA +
Preference number: 5 (lower is better)
Translates to: AKTFSVGCWRMGRLS*SLSSPRCAYSLAVA
Trigger: TGCGACGGCCAGTGAGTATGCACACCGAGGGCTGGACAGACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAAGGTTTTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CCA 90 bp CCTGAACATGCTGAGTGCCCGGGCCTCCACCTGCTCTGGCTTAGCTaGGTCCTTTTCAGCATCCTGTGGGGTCTTCTGGTTCCAGCTGAG +
Preference number: 5 (lower is better)
Translates to: PEHAECPGLHLLWLS*VLFSILWGLLVPAE
Trigger: CTCAGCTGGAACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAGGTGGAGGCCCGGGCACTCAGCATGTTCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 90 bp GGCCTCCACCTGCTCTGGCTTAGCTGGGTCCTTTTCAGCATCCTGTaGGGTCTTCTGGTTCCAGCTGAGCCACATCTGGTGCAGCTTCTC +
Preference number: 5 (lower is better)
Translates to: GLHLLWLSWVLFSIL*GLLVPAEPHLVQLL
Trigger: GAGAAGCTGCACCAGATGTGGCTCAGCTGGAACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAGGTGGAGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 90 bp GGTGATGTCCCTGAACATGCTGAGTGCCCGGGCCTCCACCTGCTCTaGCTTAGCTGGGTCCTTTTCAGCATCCTGTGGGGTCTTCTGGTT +
Preference number: 5 (lower is better)
Translates to: GDVPEHAECPGLHLL*LSWVLFSILWGLLV
Trigger: AACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAGGTGGAGGCCCGGGCACTCAGCATGTTCAGGGACATCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 90 bp GATGACACCAGTTCCTTAGTATCCGCCAAAACCTTCTCAGTCGGCTaGTGGAGGATGGGCAGGCTTTCCTGCAGTCTGTCCAGCCCTCGG +
Preference number: 5 (lower is better)
Translates to: DDTSSLVSAKTFSVG*WRMGRLSCSLSSPR
Trigger: CCGAGGGCTGGACAGACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAAGGTTTTGGCGGATACTAAGGAACTGGTGTCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CCA 90 bp CGAGCACACTTGTTAGCTGCTGCAGCGTCTCCTGTGCCTTCTGCCTaGCATTCTGCAGCTTGCCGAGGGAGTGTTCATAGGCGTGATTGC +
Preference number: 5 (lower is better)
Translates to: RAHLLAAAASPVPSA*HSAACRGSVHRRDC
Trigger: GCAATCACGCCTATGAACACTCCCTCGGCAAGCTGCAGAATGCCAGGCAGAAGGCACAGGAGACGCTGCAGCAGCTAACAAGTGTGCTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 90 bp GCCTGGCATTCTGCAGCTTGCCGAGGGAGTGTTCATAGGCGTGATTaGGCAGCCTCTCAGAGAGAGAGCCCAACCGGACAAAGTAGTTCT +
Preference number: 5 (lower is better)
Translates to: AWHSAACRGSVHRRD*AASQRESPTGQSSS
Trigger: AGAACTACTTTGTCCGGTTGGGCTCTCTCTCTGAGAGGCTGCGCAATCACGCCTATGAACACTCCCTCGGCAAGCTGCAGAATGCCAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp TGTCAGGGCAGCTCAGCTCCTAGGAAGGCAACACACATATACACCATCCACTTGGCCGTGGTGAGGGTCTaGACGCCTTTCTCAGCCACA +
Preference number: 5 (lower is better)
Translates to: CQGSSAPRKATHIYTIHLAVVRV*TPFSAT
Trigger: TGTGGCTGAGAAAGGCGTCAAGACCCTCACCACGGC...CAAGTGGATGGTGTATATGTGTGTTGCCTTCCTAGGAGCTGAGCTGCCCTGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp GCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCGGCTCAGTCAGGGGCAGGCGATaGTCTGCCCAGGCCTCTGAT +
Preference number: 5 (lower is better)
Translates to: AHKSLVCPCLDLTDYCGSVRGRR*SAQASD
Trigger: ATCAGAGGCCTGGGCAGACAATCGCCTGCCCCTGAC...TGAGCCGCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 90 bp ACTCCGCTAATCACCATCTGTCCCACACGTGAGCCCATGACTGATTaGACACCGCTGGTCATTGCTGACTTGGTCTTGTCCACGCTGTTC +
Preference number: 5 (lower is better)
Translates to: TPLITICPTREPMTD*TPLVIADLVLSTLF
Trigger: GAACAGCGTGGACAAGACCAAGTCAGCAATGACCAGCGGTGTCCAATCAGTCATGGGCTCACGTGTGGGACAGATGGTGATTAGCGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp GCCACTGAACTCAATCTCTCCCAGACTCTGGACACTCATCTCCCCAAAGCAGGTGGACACCGCTGGTCATaGCTGACTTGGTCTTGTCCA +
Preference number: 5 (lower is better)
Translates to: ATELNLSQTLDTHLPKAGGHRWS*LTWSCP
Trigger: TGGACAAGACCAAGTCAGCAATGACCAGCGGTGTCC...ACCTGCTTTGGGGAGATGAGTGTCCAGAGTCTGGGAGAGATTGAGTTCAGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp ACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTAGATTCCAGGTCAATTGCTGACTTGGTCTaGTCCACGCTGTTCTGCACA +
Preference number: 5 (lower is better)
Translates to: TTAAHPLLWSFTTLDSRSIADLV*STLFCT
Trigger: TGTGCAGAACAGCGTGGACAAGACCAAGTCAGCAAT...TGACCTGGAATCTAGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp CTTGATTTAACTGACTACTGCGGCTCACCCACTCCTTTGGTCCTTCACCACACTCTGGTCATTGCTGACTaGGTCTTGTCCACGCTGTTC +
Preference number: 5 (lower is better)
Translates to: LDLTDYCGSPTPLVLHHTLVIAD*VLSTLF
Trigger: GAACAGCGTGGACAAGACCAAGTCAGCAATGACCAG...AGTGTGGTGAAGGACCAAAGGAGTGGGTGAGCCGCAGTAGTCAGTTAAATCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp ACTAAAGCACACAAGTCGTTAGTGTGTCCCTGCCTTGATTTAACTGACTACTGCACGTACTCCACAGTGTaGTCTAGGGCCTCCCGGGCT +
Preference number: 5 (lower is better)
Translates to: TKAHKSLVCPCLDLTDYCTYSTV*SRASRA
Trigger: AGCCCGGGAGGCCCTAGACAACACTGTGGAGTACGT...GCAGTAGTCAGTTAAATCAAGGCAGGGACACACTAACGACTTGTGTGCTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS-3UTR CAA 90 bp AGTACACTCTGGCTCTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTACGCTAGATACCATTTCTaGAGCCCCAGACACTGTAGA +
Preference number: 5 (lower is better)
Translates to: STLWLSSDTPEEGIRSHYARYHF*SPRHCR
Trigger: TCTACAGTGTCTGGGGCTCAAGAAATGGTATCTAGC...GTAATGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGAGAGCCAGAGTGTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp AGGGCCTCCCGGGCTCTGGCTATGCGCTCCCGAGTTTaGGCAAGAACGCCGGCTGAGAGGTCCTGGAAGGAG +
Preference number: 6 (lower is better)
Translates to: RASRALAMRSRV*ARTPAERSWKE
Trigger: CTCCTTCCAGGACCTCTCAGCCGGCGTTCTTGCCCAAACTCGGGAGCGCATAGCCAGAGCCCGGGAGGCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CAA 90 bp CCTCGGTGTGCATACTCACTGGCCGTCGCAATCTGGGGCTCCAGCTaGGACAGGATGGGCTGTGCTGTGCTGACAGCGGCCGTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: PRCAYSLAVAIWGSS*DRMGCAVLTAAVVR
Trigger: CCTCACCACGGCCGCTGTCAGCACAGCACAGCCCATCCTGTCCAAGCTGGAGCCCCAGATTGCGACGGCCAGTGAGTATGCACACCGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS GCA 72 bp ATGCTGGCCCCCAGGGCCACACACATGCTCTGCAGCTaGTGGGTGATGTCCCTGAACATGCTGAGTGCCCGG +
Preference number: 6 (lower is better)
Translates to: MLAPRATHMLCS*WVMSLNMLSAR
Trigger: CCGGGCACTCAGCATGTTCAGGGACATCACCCAGCAGCTGCAGAGCATGTGTGTGGCCCTGGGGGCCAGCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp GCGAAGGGGCCCACCAGCCACATGGCTGGAGTGTTCTaGGCCACGTACTCCACAGTGTTGTCTAGGGCCTCC +
Preference number: 6 (lower is better)
Translates to: AKGPTSHMAGVF*ATYSTVLSRAS
Trigger: GGAGGCCCTAGACAACACTGTGGAGTACGTGGCCCAGAACACTCCAGCCATGTGGCTGGTGGGCCCCTTCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CAA 72 bp GCATACTCACTGGCCGTCGCAATCTGGGGCTCCAGCTaGGACAGGATGGGCTGTGCTGTGCTGACAGCGGCC +
Preference number: 6 (lower is better)
Translates to: AYSLAVAIWGSS*DRMGCAVLTAA
Trigger: GGCCGCTGTCAGCACAGCACAGCCCATCCTGTCCAAGCTGGAGCCCCAGATTGCGACGGCCAGTGAGTATGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CAA 90 bp GACAGGATGGGCTGTGCTGTGCTGACAGCGGCCGTGGTGAGGGTCTaGACGCCTTTCTCAGCCACATCGCACACAGTCCTGACGTGGGGG +
Preference number: 6 (lower is better)
Translates to: DRMGCAVLTAAVVRV*TPFSATSHTVLTWG
Trigger: CCCCCACGTCAGGACTGTGTGCGATGTGGCTGAGAAAGGCGTCAAGACCCTCACCACGGCCGCTGTCAGCACAGCACAGCCCATCCTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CAA 90 bp ACCAGCCACATGGCTGGAGTGTTCTGGGCCACGTACTCCACAGTGTaGTCTAGGGCCTCCCGGGCTCTGGCTATGCGCTCCCGAGTTTGG +
Preference number: 6 (lower is better)
Translates to: TSHMAGVFWATYSTV*SRASRALAMRSRVW
Trigger: CCAAACTCGGGAGCGCATAGCCAGAGCCCGGGAGGCCCTAGACAACACTGTGGAGTACGTGGCCCAGAACACTCCAGCCATGTGGCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp CCCTGGATGCTGGCCCCCAGGGCCACACACATGCTCTaGAGCTGCTGGGTGATGTCCCTGAACATGCTGAGT +
Preference number: 6 (lower is better)
Translates to: PWMLAPRATHML*SCWVMSLNMLS
Trigger: ACTCAGCATGTTCAGGGACATCACCCAGCAGCTGCAGAGCATGTGTGTGGCCCTGGGGGCCAGCATCCAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp CCTGCAGTCTGTCCAGCCCTCGGTGTGCATACTCACTaGCCGTCGCAATCTGGGGCTCCAGCTTGGACAGGA +
Preference number: 6 (lower is better)
Translates to: PAVCPALGVHTH*PSQSGAPAWTG
Trigger: TCCTGTCCAAGCTGGAGCCCCAGATTGCGACGGCCAGTGAGTATGCACACCGAGGGCTGGACAGACTGCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CAA 72 bp GGCTGTGCTGTGCTGACAGCGGCCGTGGTGAGGGTCTaGACGCCTTTCTCAGCCACATCGCACACAGTCCTG +
Preference number: 6 (lower is better)
Translates to: GCAVLTAAVVRV*TPFSATSHTVL
Trigger: CAGGACTGTGTGCGATGTGGCTGAGAAAGGCGTCAAGACCCTCACCACGGCCGCTGTCAGCACAGCACAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS TCA 72 bp GGCTATGCGCTCCCGAGTTTGGGCAAGAACGCCGGCTaGGAGGTCCTGGAAGGAGTGAATGCCGGAGAAGGT +
Preference number: 6 (lower is better)
Translates to: GYALPSLGKNAG*EVLEGVNAGEG
Trigger: ACCTTCTCCGGCATTCACTCCTTCCAGGACCTCTCAGCCGGCGTTCTTGCCCAAACTCGGGAGCGCATAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp CAAGAACGCCGGCTGAGAGGTCCTGGAAGGAGTGAATaGCGGAGAAGGTGGCCTGAAGGTCGTTCACCTGGC +
Preference number: 6 (lower is better)
Translates to: QERRLRGPGRSE*RRRWPEGRSPG
Trigger: GCCAGGTGAACGACCTTCAGGCCACCTTCTCCGGCATTCACTCCTTCCAGGACCTCTCAGCCGGCGTTCTTG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp GCTGAGTGCCCGGGCCTCCACCTGCTCTGGCTTAGCTaGGTCCTTTTCAGCATCCTGTGGGGTCTTCTGGTT +
Preference number: 6 (lower is better)
Translates to: AECPGLHLLWLS*VLFSILWGLLV
Trigger: AACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAGGTGGAGGCCCGGGCACTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp GATTCCAGGAGCGAAGGGGCCCACCAGCCACATGGCTaGAGTGTTCTGGGCCACGTACTCCACAGTGTTGTC +
Preference number: 6 (lower is better)
Translates to: DSRSEGAHQPHG*SVLGHVLHSVV
Trigger: GACAACACTGTGGAGTACGTGGCCCAGAACACTCCAGCCATGTGGCTGGTGGGCCCCTTCGCTCCTGGAATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CAA 90 bp GGTGTGGCAATCAGAGCTAGCTCCGCCTCTGTCAGGGGCAGGCGATaGTCTGCCCAGGCCTCTGATTTCACAAGCACTCTGTCCACTCCG +
Preference number: 6 (lower is better)
Translates to: GVAIRASSASVRGRR*SAQASDFTSTLSTP
Trigger: CGGAGTGGACAGAGTGCTTGTGAAATCAGAGGCCTGGGCAGACAATCGCCTGCCCCTGACAGAGGCGGAGCTAGCTCTGATTGCCACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp TTCTCAGTCGGCTGCTGGAGGATGGGCAGGCTTTCCTaGAGTCTGTCCAGCCCTCGGTGTGCATACTCACTG +
Preference number: 6 (lower is better)
Translates to: FSVGCWRMGRLS*SLSSPRCAYSL
Trigger: CAGTGAGTATGCACACCGAGGGCTGGACAGACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CCA 72 bp TATCCGCCAAAACCTTCTCAGTCGGCTGCTGGAGGATaGGCAGGCTTTCCTGCAGTCTGTCCAGCCCTCGGT +
Preference number: 6 (lower is better)
Translates to: YPPKPSQSAAGG*AGFPAVCPALG
Trigger: ACCGAGGGCTGGACAGACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAAGGTTTTGGCGGATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CAA 90 bp GAGCCCATGACTGATTGGACACCGCTGGTCATTGCTGACTTGGTCTaGTCCACGCTGTTCTGCACAGCCCCGAGGGTCACATCCACCGCT +
Preference number: 6 (lower is better)
Translates to: EPMTDWTPLVIADLV*STLFCTAPRVTSTA
Trigger: AGCGGTGGATGTGACCCTCGGGGCTGTGCAGAACAGCGTGGACAAGACCAAGTCAGCAATGACCAGCGGTGTCCAATCAGTCATGGGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CAA 90 bp ACACGTGAGCCCATGACTGATTGGACACCGCTGGTCATTGCTGACTaGGTCTTGTCCACGCTGTTCTGCACAGCCCCGAGGGTCACATCC +
Preference number: 6 (lower is better)
Translates to: TREPMTDWTPLVIAD*VLSTLFCTAPRVTS
Trigger: GGATGTGACCCTCGGGGCTGTGCAGAACAGCGTGGACAAGACCAAGTCAGCAATGACCAGCGGTGTCCAATCAGTCATGGGCTCACGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp ATGTCCCTGAACATGCTGAGTGCCCGGGCCTCCACCTaGTCTGGCTTAGCTGGGTCCTTTTCAGCATCCTGT +
Preference number: 6 (lower is better)
Translates to: MSLNMLSARAST*SGLAGSFSASC
Trigger: ACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAGGTGGAGGCCCGGGCACTCAGCATGTTCAGGGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CAA 72 bp ATCAGAGCTAGCTCCGCCTCTGTCAGGGGCAGGCGATaGTCTGCCCAGGCCTCTGATTTCACAAGCACTCTG +
Preference number: 6 (lower is better)
Translates to: IRASSASVRGRR*SAQASDFTSTL
Trigger: CAGAGTGCTTGTGAAATCAGAGGCCTGGGCAGACAATCGCCTGCCCCTGACAGAGGCGGAGCTAGCTCTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CAA 72 bp CACCCTGTTTCACGGATTCCATCAGGCCGAGCACACTaGTTAGCTGCTGCAGCGTCTCCTGTGCCTTCTGCC +
Preference number: 6 (lower is better)
Translates to: HPVSRIPSGRAH*LAAAASPVPSA
Trigger: GGCAGAAGGCACAGGAGACGCTGCAGCAGCTAACAAGTGTGCTCGGCCTGATGGAATCCGTGAAACAGGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS TCA 72 bp CTCTGTCAGGGGCAGGCGATTGTCTGCCCAGGCCTCTaGTTTCACAAGCACTCTGTCCACTCCGCTAATCAC +
Preference number: 6 (lower is better)
Translates to: LCQGQAIVCPGL*FHKHSVHSANH
Trigger: GTGATTAGCGGAGTGGACAGAGTGCTTGTGAAATCAGAGGCCTGGGCAGACAATCGCCTGCCCCTGACAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp ACACTTGTTAGCTGCTGCAGCGTCTCCTGTGCCTTCTaGCTGGCATTCTGCAGCTTGCCGAGGGAGTGTTCA +
Preference number: 6 (lower is better)
Translates to: TLVSCCSVSCAF*LAFCSLPRECS
Trigger: TGAACACTCCCTCGGCAAGCTGCAGAATGCCAGGCAGAAGGCACAGGAGACGCTGCAGCAGCTAACAAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp TTCACGGATTCCATCAGGCCGAGCACACTTGTTAGCTaGTGCAGCGTCTCCTGTGCCTTCTGCCTGGCATTC +
Preference number: 6 (lower is better)
Translates to: FTDSIRPSTLVS*CSVSCAFCLAF
Trigger: GAATGCCAGGCAGAAGGCACAGGAGACGCTGCAGCAGCTAACAAGTGTGCTCGGCCTGATGGAATCCGTGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp TTGTTAGCTGCTGCAGCGTCTCCTGTGCCTTCTGCCTaGCATTCTGCAGCTTGCCGAGGGAGTGTTCATAGG +
Preference number: 6 (lower is better)
Translates to: LLAAAASPVPSA*HSAACRGSVHR
Trigger: CCTATGAACACTCCCTCGGCAAGCTGCAGAATGCCAGGCAGAAGGCACAGGAGACGCTGCAGCAGCTAACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp CTGCTCTGGCTTAGCTGGGTCCTTTTCAGCATCCTGTaGGGTCTTCTGGTTCCAGCTGAGCCACATCTGGTG +
Preference number: 6 (lower is better)
Translates to: LLWLSWVLFSIL*GLLVPAEPHLV
Trigger: CACCAGATGTGGCTCAGCTGGAACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAAGCCAGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS GCA 72 bp AGTTCCTTAGTATCCGCCAAAACCTTCTCAGTCGGCTaGTGGAGGATGGGCAGGCTTTCCTGCAGTCTGTCC +
Preference number: 6 (lower is better)
Translates to: SSLVSAKTFSVG*WRMGRLSCSLS
Trigger: GGACAGACTGCAGGAAAGCCTGCCCATCCTCCAGCAGCCGACTGAGAAGGTTTTGGCGGATACTAAGGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019726.8
ENSMUST00000233070.2
CDS CCA 72 bp TTAGCTGGGTCCTTTTCAGCATCCTGTGGGGTCTTCTaGTTCCAGCTGAGCCACATCTGGTGCAGCTTCTCC +
Preference number: 6 (lower is better)
Translates to: LAGSFSASCGVF*FQLSHIWCSFS
Trigger: GGAGAAGCTGCACCAGATGTGGCTCAGCTGGAACCAGAAGACCCCACAGGATGCTGAAAAGGACCCAGCTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS CCA 72 bp ATCACCATCTGTCCCACACGTGAGCCCATGACTGATTaGACACCGCTGGTCATTGCTGACTTGGTCTTGTCC +
Preference number: 6 (lower is better)
Translates to: ITICPTREPMTD*TPLVIADLVLS
Trigger: GGACAAGACCAAGTCAGCAATGACCAGCGGTGTCCAATCAGTCATGGGCTCACGTGTGGGACAGATGGTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8
CDS TCA 72 bp TCCTTCGCACTAGACACTGAGCTAGATACCATTTCTTaGGCCCCAGACACTGTAGATGACACCAGTTCCTTA +
Preference number: 6 (lower is better)
Translates to: SFALDTELDTIS*APDTVDDTSSL
Trigger: TAAGGAACTGGTGTCATCTACAGTGTCTGGGGCTCAAGAAATGGTATCTAGCTCAGTGTCTAGTGCGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019726.8