Pregenerated sensors for PLIN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028494Ensembl transcript IDs: ENSMUST00000000466.13, ENSMUST00000140382.3, ENSMUST00000147097.3, ENSMUST00000149700.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AACTCCTGTGCCAGGGCCAGCTGGGGCAAGACCATAACTGAGCTGTaGGTGACCATAATGAGGCCCTTGGTTCTAAGAAGCTGCTTTTCT | + |
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Preference number: 1 (lower is better) Translates to: NSCARASWGKTITEL*VTIMRPLVLRSCFS Trigger: AGAAAAGCAGCTTCTTAGAACCAAGGGCCTCATTATGGTCACTCACAGCTCAGTTATGGTCTTGCCCCAGCTGGCCCTGGCACAGGAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR GCA 90 bp | AAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTaGCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCA | + |
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Preference number: 1 (lower is better) Translates to: KVGISSQGRKNLTSS*PSTRLERNRDEACS Trigger: TGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR TCA 90 bp | GAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAATaGATCTTTATTCGGTCCAGACAGACGTTTACAGCCAATAACAAT | + |
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Preference number: 1 (lower is better) Translates to: EMKPAQTTQEQRPRE*IFIRSRQTFTANNN Trigger: ATTGTTATTGGCTGTAAACGTCTGTCTGGACCGAATAAAGATTCATTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR CAA 90 bp | CACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCAAGCACACGCCTaGAGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: HREGKTSPQAAQAHA*RETEMKPAQTTQEQ Trigger: CTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR-3UTR TCA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAAGGGCAAGACCATAACTaGGCTGTGAGTGACCATAAT | + |
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Preference number: 2 (lower is better) Translates to: RETEMKPAQTTQEQRPREGQDHN*AVSDHN Trigger: ATTATGGTCACTCACAGCTCAGTTATGGTCTTGCCC...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR-3UTR GCA 90 bp | CAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCAAGTAAGAGAACTCCTGTaGCAGGGCCAGCTGGGGCAA | + |
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Preference number: 2 (lower is better) Translates to: QRLVFLHREGKTSPQAAQVRELL*QGQLGQ Trigger: TTGCCCCAGCTGGCCCTGGCACAGGAGTTCTCTTAC...TTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR-3UTR TCA 90 bp | GGTCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCGACTGTAAGTGCATCTaGGCTTTTAGGTTCCTCGAG | + |
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Preference number: 2 (lower is better) Translates to: GPKVGISSQGRKNLTSSCDCKCI*AFRFLE Trigger: CTCGAGGAACCTAAAAGCTCAGATGCACTTACAGTC...GCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR-3UTR GCA 90 bp | AGGAAAAACCTCACCTCAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATTTGGTTCTAAGAAGCTaGTTTTCTAAGCTAAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: RKNLTSSCPSTRLERNRDLVLRS*FSKLKP Trigger: TGGCTTTAGCTTAGAAAAGCAGCTTCTTAGAACCAA...ATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGAGGTGAGGTTTTTCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR TCA 72 bp | GCCAGGGCCAGCTGGGGCAAGACCATAACTGAGCTGTaGGTGACCATAATGAGGCCCTTGGTTCTAAGAAGC | + |
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Preference number: 3 (lower is better) Translates to: ARASWGKTITEL*VTIMRPLVLRS Trigger: GCTTCTTAGAACCAAGGGCCTCATTATGGTCACTCACAGCTCAGTTATGGTCTTGCCCCAGCTGGCCCTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR TCA 72 bp | GAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTaGATGAATCTTTATTCGGTCCAGACAGACGTTTAC | + |
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Preference number: 3 (lower is better) Translates to: EACSDHTGAEAT*MNLYSVQTDVY Trigger: GTAAACGTCTGTCTGGACCGAATAAAGATTCATTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR-3UTR CAA 90 bp | TCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCACCATAATGAGGCCCTaGGTTCTAAGAAGCTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: SKGWYFFTGKEKPHLKLPTIMRP*VLRSCF Trigger: AAAGCAGCTTCTTAGAACCAAGGGCCTCATTATGGT...GGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR GCA 72 bp | ATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTaGCCAAGCACACGCCTTGAGAGAAACAGAGATGAA | + |
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Preference number: 3 (lower is better) Translates to: ISSQGRKNLTSS*PSTRLERNRDE Trigger: TTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR CCA 72 bp | GCTCTACCAGTTATGAATGTTATTGGGTCCAAAGGTTaGTATTTCTTCACAGGGAAGGAAAAACCTCACCTC | + |
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Preference number: 3 (lower is better) Translates to: ALPVMNVIGSKG*YFFTGKEKPHL Trigger: GAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGACCCAATAACATTCATAACTGGTAGAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR TCA 90 bp | CAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCGTAACCCTTGGGCGTTaGCCAGGACAGTCTGGCATG | + |
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Preference number: 4 (lower is better) Translates to: QAAQAHALRETEMKPAQTVTLGR*PGQSGM Trigger: CATGCCAGACTGTCCTGGTCAACGCCCAAGGGTTAC...GGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR TCA 90 bp | TCAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCCAGCTCCTCCTGAGTaGGAGGGAAGTACTGGTCTA | + |
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Preference number: 4 (lower is better) Translates to: SSCPSTRLERNRDEACSDPAPPE*EGSTGL Trigger: TAGACCAGTACTTCCCTCTCACTCAGGAGGAGCTGG...GTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR TCA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAAATCTCCAGCTCCTCCTaGGTGAGAGGGAAGTACTGG | + |
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Preference number: 4 (lower is better) Translates to: RETEMKPAQTTQEQRPREISSSS*VRGKYW Trigger: CCAGTACTTCCCTCTCACTCAGGAGGAGCTGGAGAT...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | TCAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCCACCCCTGAGACTGTaGTGGCTACAGAATCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: SSCPSTRLERNRDEACSDPPLRL*WLQNPW Trigger: CCAAGGATTCTGTAGCCAGCACAGTCTCAGGGGTGG...GTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | AGGAAAAACCTCACCTCAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATCATGTAGTCTGGAGCTaGTGGGTCAGGTTGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: RKNLTSSCPSTRLERNRDHVVWS*WVRLRA Trigger: CGCCCGCAACCTGACCCAGCAGCTCCAGACTACATG...ATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGAGGTGAGGTTTTTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | CAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCCAGTCACTGCTCCTTTaGTCTTATCCACCACCCCTG | + |
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Preference number: 4 (lower is better) Translates to: QAAQAHALRETEMKPAQTQSLLL*SYPPPL Trigger: CAGGGGTGGTGGATAAGACCAAAGGAGCAGTGACTG...GGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAAGTCTGGCATGTAGTCTaGAGCTGCTGGGTCAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: RETEMKPAQTTQEQRPREVWHVV*SCWVRL Trigger: CAACCTGACCCAGCAGCTCCAGACTACATGCCAGAC...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | CACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGTTGACCAGGACAGTCTaGCATGTAGTCTGGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: HALRETEMKPAQTTQEQRLTRTV*HVVWSC Trigger: GCAGCTCCAGACTACATGCCAGACTGTCCTGGTCAA...CCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR TCA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAAGCAGCTCCGACTTGGTaGTGGCATTATCTACTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RETEMKPAQTTQEQRPREAAPTW*WHYLLH Trigger: GTGGAGTAGATAATGCCATCACCAAGTCGGAGCTGC...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | CACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGGGCAACCGCAATTTGTaGCTCCAGCTTCTGGATGAT | + |
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Preference number: 4 (lower is better) Translates to: HALRETEMKPAQTTQEQRGNRNL*LQLLDD Trigger: ATCATCCAGAAGCTGGAGCCACAAATTGCGGTTGCC...CCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| 3UTR CAA 72 bp | GGAAAAACCTCACCTCAAGCTGCCCAAGCACACGCCTaGAGAGAAACAGAGATGAAGCCTGCTCAGACCACA | + |
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Preference number: 4 (lower is better) Translates to: GKTSPQAAQAHA*RETEMKPAQTT Trigger: TGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGAGGTGAGGTTTTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | TCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCGCTTTGACCTCAGACTaGTGGACCTTCAGGCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SKGWYFFTGKEKPHLKLPALTSD*WTFRLA Trigger: GGCCAGCCTGAAGGTCCAGCAGTCTGAGGTCAAAGC...GGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | TCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCTCACCAAGGGCAGGTTaGCCACTCTCATCACCACGC | + |
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Preference number: 4 (lower is better) Translates to: SKGWYFFTGKEKPHLKLPSPRAG*PLSSPR Trigger: GCGTGGTGATGAGAGTGGCCAACCTGCCCTTGGTGA...GGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | CAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCATCTCGGACGTTGGCTaGTTCAGAATAGGCAGTCTT | + |
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Preference number: 4 (lower is better) Translates to: QAAQAHALRETEMKPAQTISDVG*FRIGSL Trigger: AAGACTGCCTATTCTGAACCAGCCAACGTCCGAGAT...GGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | CAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCTCACCCCCAAGTGTTTaGCCTGATCTTGAATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QAAQAHALRETEMKPAQTSPPSV*PDLECS Trigger: AGAACATTCAAGATCAGGCCAAACACTTGGGGGTGA...GGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | GGTCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCATCACCACGCTCTGTTaGGGATCCACTACTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: GPKVGISSQGRKNLTSSCITTLC*GSTTAA Trigger: AGCAGCAGTAGTGGATCCGCAACAGAGCGTGGTGAT...GCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | CAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCAATGTCGTCGTAGCCGATaGTTCTCTTCCACTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: QRLVFLHREGKTSPQAAQCRRSR*FSSTPP Trigger: GGGTGGAGTGGAAGAGAAGCATCGGCTACGACGACA...TTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | AGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAATGAATCTTTATTCGGTAACAATCTCGGACGTTaGCTGGTTCAGAATAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLLRPHRSRGHVNESLFGNNLGR*LVQNRQ Trigger: CTGCCTATTCTGAACCAGCCAACGTCCGAGATTGTT...ACCGAATAAAGATTCATTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR TCA 90 bp | TCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCGATAGCCAGAGTACGTaGCTCGATGTGCTCAACACA | + |
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Preference number: 4 (lower is better) Translates to: SKGWYFFTGKEKPHLKLPDSQST*LDVLNT Trigger: TGTGTTGAGCACATCGAGTCACGTACTCTGGCTATC...GGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | GGTCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCGTACGTGACTCGATGTaGTCAACACAGTGGGACTCA | + |
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Preference number: 4 (lower is better) Translates to: GPKVGISSQGRKNLTSSCVRDSM*STQWDS Trigger: TGAGTCCCACTGTGTTGAGCACATCGAGTCACGTAC...GCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CCA 90 bp | TCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCTGCAGGCATAGGTATTaGCAACCGCAATTTGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: SKGWYFFTGKEKPHLKLPCRHRY*QPQFVA Trigger: AGCCACAAATTGCGGTTGCCAATACCTATGCCTGCA...GGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR GCA 90 bp | TCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCTTCTGGTTGGCACTGTaGATATTCTTCCTGGCGAAT | + |
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Preference number: 4 (lower is better) Translates to: SKGWYFFTGKEKPHLKLPFWLAL*IFFLAN Trigger: ATTCGCCAGGAAGAATATGCACAGTGCCAACCAGAA...GGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAAGCCCGAGAGCAGAGCTaGGTAGACAGGGACTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: RETEMKPAQTTQEQRPREAREQS*VDRDSS Trigger: GCTGGAGTCCCTGTCTACCAAGCTCTGCTCTCGGGC...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAACTCACCAAGGGCAGGTaGGCCACTCTCATCACCACG | + |
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Preference number: 5 (lower is better) Translates to: RETEMKPAQTTQEQRPRELTKGR*ATLITT Trigger: CGTGGTGATGAGAGTGGCCAACCTGCCCTTGGTGAG...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | CAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCCCATTGACCACAGACTaGGTCCTTTCCACGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: QAAQAHALRETEMKPAQTPLTTD*VLSTLP Trigger: TGGCAGCGTGGAAAGGACCAAGTCTGTGGTCAATGG...GGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | TCAAGCTGCCCAAGCACACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACGGTAACCCTTGGGCGTaGACCAGGACAGTCTGGCAT | + |
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Preference number: 5 (lower is better) Translates to: SSCPSTRLERNRDEACSDGNPWA*TRTVWH Trigger: ATGCCAGACTGTCCTGGTCAACGCCCAAGGGTTACC...GTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTGTGCTTGGGCAGCTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | ACAGCAAAAGGGGTCATCTGGCCAGCAACATCATGCTCTGGTGACAAGGAGGGGGTATTGATGCTGCCATaGACCACAGACTTGGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: TAKGVIWPATSCSGDKEGVLMLP*TTDLVL Trigger: AAGGACCAAGTCTGTGGTCAATGGCAGCATCAATAC...CCCCTCCTTGTCACCAGAGCATGATGTTGCTGGCCAGATGACCCCTTTTGCTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | CACGCCTTGAGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGATCCTTCCACCTTTTTaGCTTCCATCTCCAGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: HALRETEMKPAQTTQEQRILPPF*LPSPAP Trigger: AGGAGCTGGAGATGGAAGCAAAAAAGGTGGAAGGAT...CCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCTCAAGGCGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | AGAGAAACAGAGATGAAGCCTGCTCAGACCACACAGGAGCAGAGGCCACGTGAAGGTCTCCTGGCTCTTTaGTTTGGCCTCTTTAACCCT | + |
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Preference number: 5 (lower is better) Translates to: RETEMKPAQTTQEQRPREGLLAL*FGLFNP Trigger: AGGGTTAAAGAGGCCAAACAAAAGAGCCAGGAGACC...TTCACGTGGCCTCTGCTCCTGTGTGGTCTGAGCAGGCTTCATCTCTGTTTCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | GGTCCAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCTGGCTACAGAATCCTaGGCTCCAGCCATGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: GPKVGISSQGRKNLTSSCLATES*APAMVV Trigger: GACTACCATGGCTGGAGCCAAGGATTCTGTAGCCAG...GCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTGGACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | CAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCAACCAGTCACTGCTCCTTaGGTCTTATCCACCACCCCT | + |
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Preference number: 5 (lower is better) Translates to: QRLVFLHREGKTSPQAAQPVTAP*VLSTTP Trigger: AGGGGTGGTGGATAAGACCAAAGGAGCAGTGACTGG...TTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | CAAAGGTTGGTATTTCTTCACAGGGAAGGAAAAACCTCACCTCAAGCTGCCCAAATCCCCAAAACTGTATaGATGCTGCCATTGACCACA | + |
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Preference number: 5 (lower is better) Translates to: QRLVFLHREGKTSPQAAQIPKTV*MLPLTT Trigger: TGTGGTCAATGGCAGCATCAATACAGTTTTGGGGAT...TTGGGCAGCTTGAGGTGAGGTTTTTCCTTCCCTGTGAAGAAATACCAACCTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS-3UTR CAA 90 bp | AGAAGCTGCTTTTCTAAGCTAAAGCCATCTACCAAGTTAATTTCAATACAGCAAATTGGCAACCGCAATTaGTGGCTCCAGCTTCTGGAT | + |
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Preference number: 5 (lower is better) Translates to: RSCFSKLKPSTKLISIQQIGNRN*WLQLLD Trigger: ATCCAGAAGCTGGAGCCACAAATTGCGGTTGCCAAT...TTGCTGTATTGAAATTAACTTGGTAGATGGCTTTAGCTTAGAAAAGCAGCTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS CCA 72 bp | CCTTGGGCGTTGACCAGGACAGTCTGGCATGTAGTCTaGAGCTGCTGGGTCAGGTTGCGGGCGATAGCCAGA | + |
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Preference number: 6 (lower is better) Translates to: PWALTRTVWHVV*SCWVRLRAIAR Trigger: TCTGGCTATCGCCCGCAACCTGACCCAGCAGCTCCAGACTACATGCCAGACTGTCCTGGTCAACGCCCAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000466.13 |
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| CDS CAA 72 bp | AACTGCACCATCCCCAAAACTGTATTGATGCTGCCATaGACCACAGACTTGGTCCTTTCCACGCTGCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: NCTIPKTVLMLP*TTDLVLSTLPV Trigger: GACTGGCAGCGTGGAAAGGACCAAGTCTGTGGTCAATGGCAGCATCAATACAGTTTTGGGGATGGTGCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000466.13 ENSMUST00000140382.3 ENSMUST00000147097.3 ENSMUST00000149700.8 |
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| CDS CAA 72 bp | CCACTGTTCATGAACTGCACCATCCCCAAAACTGTATaGATGCTGCCATTGACCACAGACTTGGTCCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: PLFMNCTIPKTV*MLPLTTDLVLS Trigger: GGAAAGGACCAAGTCTGTGGTCAATGGCAGCATCAATACAGTTTTGGGGATGGTGCAGTTCATGAACAGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000466.13 ENSMUST00000140382.3 ENSMUST00000147097.3 ENSMUST00000149700.8 |
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| CDS CAA 90 bp | TTATCTACTCCACTGTTCATGAACTGCACCATCCCCAAAACTGTATaGATGCTGCCATTGACCACAGACTTGGTCCTTTCCACGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: LSTPLFMNCTIPKTV*MLPLTTDLVLSTLP Trigger: TGGCAGCGTGGAAAGGACCAAGTCTGTGGTCAATGGCAGCATCAATACAGTTTTGGGGATGGTGCAGTTCATGAACAGTGGAGTAGATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000466.13 ENSMUST00000140382.3 ENSMUST00000147097.3 ENSMUST00000149700.8 |
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| CDS GCA 72 bp | TTGGTGATGGCATTATCTACTCCACTGTTCATGAACTaGACCATCCCCAAAACTGTATTGATGCTGCCATTG | + |
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Preference number: 6 (lower is better) Translates to: LVMALSTPLFMN*TIPKTVLMLPL Trigger: CAATGGCAGCATCAATACAGTTTTGGGGATGGTGCAGTTCATGAACAGTGGAGTAGATAATGCCATCACCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000000466.13 ENSMUST00000140382.3 ENSMUST00000147097.3 ENSMUST00000149700.8 |
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