RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030546

Ensembl transcript IDs: ENSMUST00000032762.14, ENSMUST00000178257.3, ENSMUST00000205413.2, ENSMUST00000205553.2, ENSMUST00000205747.2, ENSMUST00000205915.2, ENSMUST00000206083.2

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACGGGACTTTCAGGAGGAGGCAGAATAATAGAGGCGGGGCGAGCCTaGAAGGACCCTTGTTTCTGCCACCAGCAGCTCTCTGCTGCCCCC +
Preference number: 1 (lower is better)
Translates to: TGLSGGGRIIEAGRA*KDPCFCHQQLSAAP
Trigger: GGGGGCAGCAGAGAGCTGCTGGTGGCAGAAACAAGGGTCCTTTCAGGCTCGCCCCGCCTCTATTATTCTGCCTCCTCCTGAAAGTCCCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR TCA 90 bp CTGCCCCCACCTGTCGGGAGCCAGTATCAGCAGCAGCTGGGCGAATaGGCCTTCTCTCTCCTTAAGCCTTCAGCACTGCTAGGCCAGTTT +
Preference number: 1 (lower is better)
Translates to: LPPPVGSQYQQQLGE*AFSLLKPSALLGQF
Trigger: AAACTGGCCTAGCAGTGCTGAAGGCTTAAGGAGAGAGAAGGCTCATTCGCCCAGCTGCTGCTGATACTGGCTCCCGACAGGTGGGGGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CCA 90 bp AAAAGGAGCTGGGCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTaGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGT +
Preference number: 1 (lower is better)
Translates to: KRSWAVVAHAFSSST*EAEAGGFLSSRPAC
Trigger: ACAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGCCCAGCTCCTTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR TCA 90 bp ATAGGTAAGCAAGGGAAGCAGTCAGGGAGGTGTACAAACAAGCTGTaGGACGATCAGACAGACCGACAAGCAGAGATGCAGACATGCGGG +
Preference number: 1 (lower is better)
Translates to: IGKQGKQSGRCTNKL*DDQTDRQAEMQTCG
Trigger: CCCGCATGTCTGCATCTCTGCTTGTCGGTCTGTCTGATCGTCTCACAGCTTGTTTGTACACCTCCCTGACTGCTTCCCTTGCTTACCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR TCA 90 bp AGCACTGGAAATGGAACCAGCCTGGACCAAATAGGGAGACATTATTaGAAAAGGAGCTGGGCAGTGGTGGCGCACGCCTTTAGTTCCAGC +
Preference number: 1 (lower is better)
Translates to: STGNGTSLDQIGRHY*KRSWAVVAHAFSSS
Trigger: GCTGGAACTAAAGGCGTGCGCCACCACTGCCCAGCTCCTTTTTCAATAATGTCTCCCTATTTGGTCCAGGCTGGTTCCATTTCCAGTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR CCA 90 bp CACAAACAAATGATTCTATCATCAAGTGGGAGGCAAAGGCAGGGATaGGGATTGGGCTGGGGAGGTATTTTGGGCTGGGAAGGATCAGTG +
Preference number: 1 (lower is better)
Translates to: HKQMILSSSGRQRQG*GLGWGGILGWEGSV
Trigger: CACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATCCCCATCCCTGCCTTTGCCTCCCACTTGATGATAGAATCATTTGTTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
3UTR CCA 90 bp TGCTGGTTTGTGATACTGCAGCTTCTGTTACATTTGGAGTTGGAGTaGCTAAATGTCCTGCCACTGGTCCTACTCTCACCGCTGCTCACA +
Preference number: 1 (lower is better)
Translates to: CWFVILQLLLHLELE*LNVLPLVLLSPLLT
Trigger: TGTGAGCAGCGGTGAGAGTAGGACCAGTGGCAGGACATTTAGCCACTCCAACTCCAAATGTAACAGAAGCTGCAGTATCACAAACCAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CCA 90 bp ATTCTATCATCAAGTGGGAGGCAAAGGCAGGGATGGGGATTGGGCTaGGGAGGTATTTTGGGCTGGGAAGGATCAGTGTATAAGAAGGTT +
Preference number: 1 (lower is better)
Translates to: ILSSSGRQRQGWGLG*GGILGWEGSVYKKV
Trigger: AACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATCCCCATCCCTGCCTTTGCCTCCCACTTGATGATAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
3UTR CCA 90 bp GGCTGGGAAGGATCAGTGTATAAGAAGGTTCTGAACGCTGAGGATTaGAGAAGGGTCTTCAGGTACTGGACAAAAGGAGGGCTTATATCT +
Preference number: 1 (lower is better)
Translates to: GWEGSVYKKVLNAED*RRVFRYWTKGGLIS
Trigger: AGATATAAGCCCTCCTTTTGTCCAGTACCTGAAGACCCTTCTCCAATCCTCAGCGTTCAGAACCTTCTTATACACTGATCCTTCCCAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
3UTR-3UTR TCA 90 bp GGAGCTGGGCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGAGGAAGAAGAAGCCATaGGAGAATCTGCCCACGAGA +
Preference number: 2 (lower is better)
Translates to: GAGQWWRTPLVPALGRQRRKKKP*ENLPTR
Trigger: TCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCT...CCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGCCCAGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR-3UTR TCA 90 bp TTGTCCCCACCACACCCGGACCTCTCCCAACATTCTTTGGCTGTCATTGTTAGCTGCGGGGAGTATCAGTaGACAGGCAGGATGCCACAG +
Preference number: 2 (lower is better)
Translates to: LSPPHPDLSQHSLAVIVSCGEYQ*TGRMPQ
Trigger: CTGTGGCATCCTGCCTGTTCACTGATACTCCCCGCA...GCTAACAATGACAGCCAAAGAATGTTGGGAGAGGTCCGGGTGTGGTGGGGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CAA 90 bp AGTGGGAGGCAAAGGCAGGGATGGGGATTGGGCTGGGGAGGTATTTaGGGCTGGGAAGGATCAGTGTATAAGAAGGTTCTGAACGCTGAG +
Preference number: 2 (lower is better)
Translates to: SGRQRQGWGLGWGGI*GWEGSVYKKVLNAE
Trigger: CTCAGCGTTCAGAACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATCCCCATCCCTGCCTTTGCCTCCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
3UTR-3UTR TCA 90 bp TCACGCATATGGTGCATTTTCTCACTCTTATCCCTGCGTCTTCTCAATCCCCCTGAGGCGGGGCGAGCCTaGAAGGACCCTTGTTTCTGC +
Preference number: 2 (lower is better)
Translates to: SRIWCIFSLLSLRLLNPPEAGRA*KDPCFC
Trigger: GCAGAAACAAGGGTCCTTTCAGGCTCGCCCCGCCTC...AGGGGGATTGAGAAGACGCAGGGATAAGAGTGAGAAAATGCACCATATGCGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR-3UTR CCA 90 bp TCGGGAGCCAGTATCAGCAGCAGCTGGGCGAATGAGCCTTCTCTCTCCTTAAGCCGAGCGTGTTTCTGCTaGTTTGTGATACTGCAGCTT +
Preference number: 2 (lower is better)
Translates to: SGASISSSWANEPSLSLSRACFC*FVILQL
Trigger: AAGCTGCAGTATCACAAACCAGCAGAAACACGCTCG...GCTTAAGGAGAGAGAAGGCTCATTCGCCCAGCTGCTGCTGATACTGGCTCCCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR-3UTR GCA 90 bp CCTCATCCTAACTGTATCAAGAAGAATAGAGCAGCAGCTTTACCTGGGTATCCTAGGGCTGGGAAGGCCTaGATAAGAGGCCCGCATGGG +
Preference number: 2 (lower is better)
Translates to: PHPNCIKKNRAAALPGYPRAGKA*IRGPHG
Trigger: CCCATGCGGGCCTCTTATGCAGGCCTTCCCAGCCCT...AGGATACCCAGGTAAAGCTGCTGCTCTATTCTTCTTGATACAGTTAGGATGAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR-3UTR TCA 90 bp AAGGTGGTGGGGCAGGGCCACACCTCAGTTTGCATCATGTCCCTTTTCTTCTTCAGTCTCAGTCCAGCTTaGAGGATGTTTCCAAGACAG +
Preference number: 2 (lower is better)
Translates to: KVVGQGHTSVCIMSLFFFSLSPA*RMFPRQ
Trigger: CTGTCTTGGAAACATCCTTCAAGCTGGACTGAGACT...GAAGAAGAAAAGGGACATGATGCAAACTGAGGTGTGGCCCTGCCCCACCACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR-3UTR TCA 90 bp GTGGAGCCTTTAAGTCTTCCTTGCCTGGTTACTTGGGTAGAATTCTCACATACCCAGCAGCTGGGCGAATaGGCCTTCTCTCTCCTTAAG +
Preference number: 2 (lower is better)
Translates to: VEPLSLPCLVTWVEFSHTQQLGE*AFSLLK
Trigger: CTTAAGGAGAGAGAAGGCTCATTCGCCCAGCTGCTG...GGTATGTGAGAATTCTACCCAAGTAACCAGGCAAGGAAGACTTAAAGGCTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CAA 90 bp TGTTTCTGCTGGTTTGTGATACTGCAGCTTCTGTTACATTTGGAGTaGGAGTGGCTAAATGTCCTGCCACTGGTCCTACTCTCACCGCTG +
Preference number: 2 (lower is better)
Translates to: CFCWFVILQLLLHLE*EWLNVLPLVLLSPL
Trigger: CAGCGGTGAGAGTAGGACCAGTGGCAGGACATTTAGCCACTCCAACTCCAAATGTAACAGAAGCTGCAGTATCACAAACCAGCAGAAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR-3UTR GCA 90 bp CAAAAGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCAAGCCCCCAAAGGATaGTTTAGACATGATGTGTGC +
Preference number: 2 (lower is better)
Translates to: QKMATAGSQHLGNQFQGDQAPKG*FRHDVC
Trigger: GCACACATCATGTCTAAAGCATCCTTTGGGGGCTTG...GTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCTTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR-3UTR TCA 90 bp TCACGCATATGGTGCATTTTCTCACTCTTATCCCTGCGTCTTCTCAATCCCCCTCCAGGGCTTTGTATGTaGCCACGGATTTTAAGTGGA +
Preference number: 2 (lower is better)
Translates to: SRIWCIFSLLSLRLLNPPPGLCM*PRILSG
Trigger: TCCACTTAAAATCCGTGGTCACATACAAAGCCCTGG...AGGGGGATTGAGAAGACGCAGGGATAAGAGTGAGAAAATGCACCATATGCGTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR-3UTR CCA 90 bp CAAAAGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACGAGAGACTCAGAAACTaGAGCTGCCGTCTAAATAAA +
Preference number: 2 (lower is better)
Translates to: QKMATAGSQHLGNQFQGDERLRN*SCRLNK
Trigger: TTTATTTAGACGGCAGCTCCAGTTTCTGAGTCTCTC...GTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR CAA 90 bp CCACGGATTTTAAGTGGAGCCTTTAAGTCTTCCTTGCCTGGTTACTaGGGTAGAATTCTCACATACCCACAAGCCTCTATCAGGATGGTA +
Preference number: 2 (lower is better)
Translates to: PRILSGAFKSSLPGY*GRILTYPQASIRMV
Trigger: TACCATCCTGATAGAGGCTTGTGGGTATGTGAGAATTCTACCCAAGTAACCAGGCAAGGAAGACTTAAAGGCTCCACTTAAAATCCGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR-3UTR CCA 90 bp ATCCTAACTGTATCAAGAAGAATAGAGCAGCAGCTTTACCTGGGTATCCTGGGGGGAAATCTGCATAGTTaGGGAGGACAGCTAATAGGA +
Preference number: 2 (lower is better)
Translates to: ILTVSRRIEQQLYLGILGGNLHS*GGQLIG
Trigger: TCCTATTAGCTGTCCTCCCCAACTATGCAGATTTCC...CCCCAGGATACCCAGGTAAAGCTGCTGCTCTATTCTTCTTGATACAGTTAGGAT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR-3UTR CCA 90 bp ATGAACATATGTGCTCTATGTATGATATACCGTATTAAGCAAAAGATGGCCACTACGTTCAGAGGGAGCTaGCCAGAGAGGGGATCACCT +
Preference number: 2 (lower is better)
Translates to: MNICALCMIYRIKQKMATTFRGS*PERGSP
Trigger: AGGTGATCCCCTCTCTGGCCAGCTCCCTCTGAACGT...AGTGGCCATCTTTTGCTTAATACGGTATATCATACATAGAGCACATATGTTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR-3UTR TCA 90 bp ATCCTAACTGTATCAAGAAGAATAGAGCAGCAGCTTTACCTGGGTATCCTGGGGAGGACTCTTGTCTACTaGACAGGTTTTATGGTTTTG +
Preference number: 2 (lower is better)
Translates to: ILTVSRRIEQQLYLGILGRTLVY*TGFMVL
Trigger: CAAAACCATAAAACCTGTTCAGTAGACAAGAGTCCT...CCCCAGGATACCCAGGTAAAGCTGCTGCTCTATTCTTCTTGATACAGTTAGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR-3UTR TCA 90 bp CTTTATTCACGCATATGGTGCATTTTCTCACTCTTATCCCTGCGTCTTCTCAATGTTTCTGCTGGTTTGTaGTACTGCAGCTTCTGTTAC +
Preference number: 2 (lower is better)
Translates to: LYSRIWCIFSLLSLRLLNVSAGL*YCSFCY
Trigger: GTAACAGAAGCTGCAGTATCACAAACCAGCAGAAAC...ATTGAGAAGACGCAGGGATAAGAGTGAGAAAATGCACCATATGCGTGAATAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR-3UTR CCA 90 bp ATGAACATATGTGCTCTATGTATGATATACCGTATTAAGCAAAAGATGGCCACTGCAGGAGTGATGACATaGAAAAGTGGCTGTGAAAAA +
Preference number: 2 (lower is better)
Translates to: MNICALCMIYRIKQKMATAGVMT*KSGCEK
Trigger: TTTTTCACAGCCACTTTTCCATGTCATCACTCCTGC...AGTGGCCATCTTTTGCTTAATACGGTATATCATACATAGAGCACATATGTTCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR CCA 72 bp AAGGCTAGGAGTCAGAGAGACTCCGAGGGAAGGTGGTaGGGCAGGGCCACACCTCAGTTTGCATCATGTCCC +
Preference number: 3 (lower is better)
Translates to: KARSQRDSEGRW*GRATPQFASCP
Trigger: GGGACATGATGCAAACTGAGGTGTGGCCCTGCCCCACCACCTTCCCTCGGAGTCTCTCTGACTCCTAGCCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR CCA 72 bp TGGGCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTaGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGG +
Preference number: 3 (lower is better)
Translates to: WAVVAHAFSSST*EAEAGGFLSSR
Trigger: CCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR GCA 72 bp CTGCCCACGAGAAAGGAGAGTCGACCGCGGCTCTGGTaGCCCTTAAAAATTGGTTCTGATGGTCAAGCCCCC +
Preference number: 3 (lower is better)
Translates to: LPTRKESRPRLW*PLKIGSDGQAP
Trigger: GGGGGCTTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTTTCTCGTGGGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR TCA 72 bp CCTGTCGGGAGCCAGTATCAGCAGCAGCTGGGCGAATaGGCCTTCTCTCTCCTTAAGCCTTCAGCACTGCTA +
Preference number: 3 (lower is better)
Translates to: PVGSQYQQQLGE*AFSLLKPSALL
Trigger: TAGCAGTGCTGAAGGCTTAAGGAGAGAGAAGGCTCATTCGCCCAGCTGCTGCTGATACTGGCTCCCGACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR TCA 72 bp TCAGGAGGAGGCAGAATAATAGAGGCGGGGCGAGCCTaGAAGGACCCTTGTTTCTGCCACCAGCAGCTCTCT +
Preference number: 3 (lower is better)
Translates to: SGGGRIIEAGRA*KDPCFCHQQLS
Trigger: AGAGAGCTGCTGGTGGCAGAAACAAGGGTCCTTTCAGGCTCGCCCCGCCTCTATTATTCTGCCTCCTCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CCA 72 bp AATCTGCCCACGAGAAAGGAGAGTCGACCGCGGCTCTaGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGCC +
Preference number: 3 (lower is better)
Translates to: NLPTRKESRPRL*CPLKIGSDGQA
Trigger: GGCTTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTTTCTCGTGGGCAGATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCTAAAGGAAAGGCCCTaGACGAGAAGCGACCTTCCC +
Preference number: 3 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESLKERP*TRSDLP
Trigger: GGGAAGGTCGCTTCTCGTCAAGGGCCTTTCCTTTAG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR-3UTR CAA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGCTAAAGGAAAGGCCCTaGACGAGAAGCGACCTTCCC +
Preference number: 3 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLELKERP*TRSDLP
Trigger: GGGAAGGTCGCTTCTCGTCAAGGGCCTTTCCTTTAG...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR TCA 72 bp CAAGGGAAGCAGTCAGGGAGGTGTACAAACAAGCTGTaGGACGATCAGACAGACCGACAAGCAGAGATGCAG +
Preference number: 3 (lower is better)
Translates to: QGKQSGRCTNKL*DDQTDRQAEMQ
Trigger: CTGCATCTCTGCTTGTCGGTCTGTCTGATCGTCTCACAGCTTGTTTGTACACCTCCCTGACTGCTTCCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR GCA 72 bp CCCCAGTGCAGGGGAGAGAGACTCAGAAACTGGAGCTaGCGTCTAAATAAACACACAAAGGCTTCAGCACCT +
Preference number: 3 (lower is better)
Translates to: PQCRGERLRNWS*RLNKHTKASAP
Trigger: AGGTGCTGAAGCCTTTGTGTGTTTATTTAGACGGCAGCTCCAGTTTCTGAGTCTCTCTCCCCTGCACTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR GCA 72 bp TCTACTGTTTTAATAGCAAATAGGGCTGGGAAGGCCTaGATAAGAGGCCCGCATGGGGTCATGAAGGCTAGG +
Preference number: 3 (lower is better)
Translates to: STVLIANRAGKA*IRGPHGVMKAR
Trigger: CCTAGCCTTCATGACCCCATGCGGGCCTCTTATGCAGGCCTTCCCAGCCCTATTTGCTATTAAAACAGTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR-3UTR CAA 90 bp GCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACACAGGCAATAGGGAGACATTATaGAAAAAGGAGCTGGGCAGT +
Preference number: 3 (lower is better)
Translates to: ATAGSQHLGNQFQGDHTGNRETL*KKELGS
Trigger: ACTGCCCAGCTCCTTTTTCAATAATGTCTCCCTATT...GCCTGTGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR CCA 72 bp TTAAGCAAAAGATGGCCACTGCTGGTTCCCAGCATCTaGGGAATCAATTTCAAGGTGACCACACAGGCAGGA +
Preference number: 3 (lower is better)
Translates to: LSKRWPLLVPSI*GINFKVTTQAG
Trigger: TCCTGCCTGTGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCTTTTGCTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR CCA 72 bp GGATCAGTGTATAAGAAGGTTCTGAACGCTGAGGATTaGAGAAGGGTCTTCAGGTACTGGACAAAAGGAGGG +
Preference number: 3 (lower is better)
Translates to: GSVYKKVLNAED*RRVFRYWTKGG
Trigger: CCCTCCTTTTGTCCAGTACCTGAAGACCCTTCTCCAATCCTCAGCGTTCAGAACCTTCTTATACACTGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
3UTR TCA 72 bp GCTAGGCCAGTTTTCGAGCGTGTTTCTGCTGGTTTGTaGTACTGCAGCTTCTGTTACATTTGGAGTTGGAGT +
Preference number: 3 (lower is better)
Translates to: ARPVFERVSAGL*YCSFCYIWSWS
Trigger: ACTCCAACTCCAAATGTAACAGAAGCTGCAGTATCACAAACCAGCAGAAACACGCTCGAAAACTGGCCTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR GCA 72 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATaGTTTAGACATGATGTGTGCCTCGAGAGCATCGTG +
Preference number: 3 (lower is better)
Translates to: LKIGSDGQAPKG*FRHDVCLESIV
Trigger: CACGATGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR GCA 72 bp TGTATTTTTCTTGGACAACTTTATTCACGCATATGGTaGATTTTCTCACTCTTATCCCTGCGTCTTCTCAAT +
Preference number: 3 (lower is better)
Translates to: CIFLGQLYSRIW*IFSLLSLRLLN
Trigger: ATTGAGAAGACGCAGGGATAAGAGTGAGAAAATGCACCATATGCGTGAATAAAGTTGTCCAAGAAAAATACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CAA 72 bp GGGGTCGTGGCTCAGGCCACCCTAAAGGAAAGGCCCTaGACGAGAAGCGACCTTCCCGTGGGGCGAGCAGGG +
Preference number: 4 (lower is better)
Translates to: GVVAQATLKERP*TRSDLPVGRAG
Trigger: CCCTGCTCGCCCCACGGGAAGGTCGCTTCTCGTCAAGGGCCTTTCCTTTAGGGTGGCCTGAGCCACGACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGCAGGTGGAACCCGCACCTCACTCTaGCGCCGGGACACCACCTGC +
Preference number: 4 (lower is better)
Translates to: AVVAHAFSSSTWEAEAGGTRTSL*RRDTTC
Trigger: GCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGT...TCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GGCGGGGCGAGCCTGAAAGGACCCTTGTTTCTGCCACCAGCAGCTCTCTGCTGCAGGACTCACACTGGGTaGACAGCCGACGGACCACCG +
Preference number: 4 (lower is better)
Translates to: GGASLKGPLFLPPAALCCRTHTG*TADGPP
Trigger: CGGTGGTCCGTCGGCTGTCCACCCAGTGTGAGTCCT...GCAGCAGAGAGCTGCTGGTGGCAGAAACAAGGGTCCTTTCAGGCTCGCCCCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR CCA 90 bp GCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGCAGGTGGACACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: AVVAHAFSSSTWEAEAGGHPGST*PESGPA
Trigger: AGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTG...TCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGAGCTGGGCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGTGGAGCACGTTCTCCTaGTCAGGGAGGTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: GAGQWWRTPLVPALGRQRWSTFS*SGRSPS
Trigger: GGATGGAGACCTCCCTGAGCAGGAGAACGTGCTCCA...CCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGCCCAGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGCAGGTGGAGGAGACAGCCTGGGCTaGTGTGAGGTGCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: AVVAHAFSSSTWEAEAGGGDSLG*CEVQDP
Trigger: AGGATCCTGCACCTCACACCAGCCCAGGCTGTCTCC...TCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp GCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACACAGGCCCAGGATGGGCTCCATaGCGCTGGGCCGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: ATAGSQHLGNQFQGDHTGPGWAP*RWAGRS
Trigger: GCTTCTTCCGGCCCAGCGTCATGGAGCCCATCCTGG...GCCTGTGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCACGCAGCTGGCTGTACTaGGCGCGGCCCAGGATGGGC +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRARSWLY*ARPRMG
Trigger: GCCCATCCTGGGCCGCGCGCAGTACAGCCAGCTGCG...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCGCAGCTGGCTGTACTaGGCGCGGCCCAGGATGGGC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESRSWLY*ARPRMG
Trigger: GCCCATCCTGGGCCGCGCGCAGTACAGCCAGCTGCG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGCCGATGCGCCCCACTaGGCCAGGCTGCTCAGGGGT +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQADAPH*ARLLRG
Trigger: ACCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR CAA 72 bp CTGCCACTGGTCCTACTCTCACCGCTGCTCACAGAGTaGTCCCCACCACACCCGGACCTCTCCCAACATTCT +
Preference number: 4 (lower is better)
Translates to: LPLVLLSPLLTE*SPPHPDLSQHS
Trigger: AGAATGTTGGGAGAGGTCCGGGTGTGGTGGGGACAACTCTGTGAGCAGCGGTGAGAGTAGGACCAGTGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CAA 72 bp CAGAATAATAGAGGCGGGGCGAGCCTGAAAGGACCCTaGTTTCTGCCACCAGCAGCTCTCTGCTGCCCCCAC +
Preference number: 4 (lower is better)
Translates to: QNNRGGASLKGP*FLPPAALCCPH
Trigger: GTGGGGGCAGCAGAGAGCTGCTGGTGGCAGAAACAAGGGTCCTTTCAGGCTCGCCCCGCCTCTATTATTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR GCA 90 bp GGGCAGGGCCACACCTCAGTTTGCATCATGTCCCTTTTCTTCTTCCATGGCCTGGCCAGAGAGTGGCCCTaGTTCAGGGCCCATGCTGTG +
Preference number: 4 (lower is better)
Translates to: GQGHTSVCIMSLFFFHGLAREWP*FRAHAV
Trigger: CACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGC...CAGGCCATGGAAGAAGAAAAGGGACATGATGCAAACTGAGGTGTGGCCCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCACCACCTGCATGGCTaGCGATGCGCCCCACTGGGC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESHHLHG*RCAPLG
Trigger: GCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGACCCGCACCTCACTCTaGCGCCGGGACACCACCTGC +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLETRTSL*RRDTTC
Trigger: GCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGT...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAACCCGCACCTCACTCTaGCGCCGGGACACCACCTGC +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRATRTSL*RRDTTC
Trigger: GCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGT...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGAGGCTGCCAGGTTGTaGAGCCAGGGCACCCGCACC +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRAEAARL*SQGTRT
Trigger: GGTGCGGGTGCCCTGGCTGCACAACCTGGCAGCCTC...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGCGCCCCGGACCCTTTaGGCTCCGCCTCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQAPRTL*APPLLK
Trigger: CTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACGCCGATGCGCCCCACTaGGCCAGGCTGCTCAGGGGT +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDADAPH*ARLLRG
Trigger: ACCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGC...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAACCAGGATGGGCTCCATaGCGCTGGGCCGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQPGWAP*RWAGRS
Trigger: GCTTCTTCCGGCCCAGCGTCATGGAGCCCATCCTGG...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCCAGGATGGGCTCCATaGCGCTGGGCCGGAAGAAGC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESPGWAP*RWAGRS
Trigger: GCTTCTTCCGGCCCAGCGTCATGGAGCCCATCCTGG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGTTCTACAGGTGGTCCAGGCCTCTaGAGGCCAACTCATTGGCAG +
Preference number: 4 (lower is better)
Translates to: TWEAEAGGFLSSRPACSTGGPGL*RPTHWQ
Trigger: CTGCCAATGAGTTGGCCTGCAGAGGCCTGGACCACC...TGTAGAACAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACCACCACCTGCATGGCTaGCGATGCGCCCCACTGGGC +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDHHLHG*RCAPLG
Trigger: GCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTG...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACGAGGCTGCCAGGTTGTaGAGCCAGGGCACCCGCACC +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDEAARL*SQGTRT
Trigger: GGTGCGGGTGCCCTGGCTGCACAACCTGGCAGCCTC...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGGATCCTTCCCACCGTaGCCAGCACAGCCGCAGGTG +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRAGSFPP*PAQPQV
Trigger: CACCTGCGGCTGTGCTGGGCACGGTGGGAAGGATCC...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CAAAAGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACGCGCCCCGGACCCTTTaGGCTCCGCCTCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: QKMATAGSQHLGNQFQGDAPRTL*APPLLK
Trigger: CTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGC...GTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCTTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCGCAGCCGGCCAGAGTaGCCCCCAGAACCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESRSRPE*PPEPCQ
Trigger: CTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGCAGGTGGAATTCTGCTGTCTCTTTaGCCATCCCCAAGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: AVVAHAFSSSTWEAEAGGILLSL*PSPRQA
Trigger: AGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAAT...TCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACACAGGCCACATGGCCAGAGAGTaGCCCTGCTTCAGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: ATAGSQHLGNQFQGDHTGHMARE*PCFRAH
Trigger: ATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTG...GCCTGTGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CTGGGGAATCAATTTCAAGGTGACCACACAGGCAGGAGTGATGACATGGAAAAGGCCGATGCGCCCCACTaGGCCAGGCTGCTCAGGGGT +
Preference number: 4 (lower is better)
Translates to: LGNQFQGDHTGRSDDMEKADAPH*ARLLRG
Trigger: ACCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGC...CTTTTCCATGTCATCACTCCTGCCTGTGTGGTCACCTTGAAATTGATTCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGGGGACACCACCTGCATaGCTGCCGATGCGCCCCACT +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEGTPPA*LPMRPT
Trigger: AGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCC...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGGGACACCACCTGCATaGCTGCCGATGCGCCCCACT +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESGTPPA*LPMRPT
Trigger: AGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCTCTTCTTGCGCAGCTaGCTGTACTGCGCGCGGCCC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESLFLRS*LYCARP
Trigger: GGGCCGCGCGCAGTACAGCCAGCTGCGCAAGAAGAG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGCCAGAGAGTGGCCCTaGTTCAGGGCCCATGCTGTG +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESAREWP*FRAHAV
Trigger: CACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGGCCAGAGAGTGGCCCTaGTTCAGGGCCCATGCTGTG +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEAREWP*FRAHAV
Trigger: CACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGC...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAACAGGCTGCTCAGGGGTaGCACACCCGGGATCCACAT +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQQAAQG*HTRDPH
Trigger: ATGTGGATCCCGGGTGTGGCACCCCTGAGCAGCCTG...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACCGCAGCCGGCCAGAGTaGCCCCCAGAACCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDRSRPE*PPEPCQ
Trigger: CTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCG...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CCTGGACAACAAGCTTACCAGCCTCTTAGGACCCCTGGCTTTATGTCTAAAGTCCGCAGCCGGCCAGAGTaGCCCCCAGAACCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: PGQQAYQPLRTPGFMSKVRSRPE*PPEPCQ
Trigger: CTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCG...GACTTTAGACATAAAGCCAGGGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGTTCTACAGGCTTGGTTTGGCCTTaGGAGCCTTCTGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: TWEAEAGGFLSSRPACSTGLVWP*EPSGSS
Trigger: AGAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCC...TGTAGAACAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGCACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEHPGST*PESGPA
Trigger: AGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTG...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTAGGACCCCTGCACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: LFFFHGLDNKLTSLLGPLHPGST*PESGPA
Trigger: AGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTG...CAGGGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACGGGACACCACCTGCATaGCTGCCGATGCGCCCCACT +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDGTPPA*LPMRPT
Trigger: AGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCC...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACCTCTTCTTGCGCAGCTaGCTGTACTGCGCGCGGCCC +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDLFLRS*LYCARP
Trigger: GGGCCGCGCGCAGTACAGCCAGCTGCGCAAGAAGAG...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GACAGACCGACAAGCAGAGATGCAGACATGCGGGGAGTATCAGTGAACAGGCAGTATGAGGACTCACACTaGGTGGACAGCCGACGGACC +
Preference number: 4 (lower is better)
Translates to: DRPTSRDADMRGVSVNRQYEDSH*VDSRRT
Trigger: GGTCCGTCGGCTGTCCACCCAGTGTGAGTCCTCATA...CTGCCTGTTCACTGATACTCCCCGCATGTCTGCATCTCTGCTTGTCGGTCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR TCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGTGTTGGCCAGGGTGCTaGCCCTCCTCACAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLECWPGC*PSSQGL
Trigger: CAAGCCTTGTGAGGAGGGTCAGCACCCTGGCCAACA...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAATGTTGGCCAGGGTGCTaGCCCTCCTCACAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQCWPGC*PSSQGL
Trigger: CAAGCCTTGTGAGGAGGGTCAGCACCCTGGCCAACA...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp AGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACATGTTGGCCAGGGTGCTaGCCCTCCTCACAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: RWPLLVPSIWGINFKVTTCWPGC*PSSQGL
Trigger: CAAGCCTTGTGAGGAGGGTCAGCACCCTGGCCAACA...TGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp TCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTAGGACCCTGTTGGCCAGGGTGCTaGCCCTCCTCACAAGGCTTG +
Preference number: 4 (lower is better)
Translates to: SLFFFHGLDNKLTSLLGPCWPGC*PSSQGL
Trigger: CAAGCCTTGTGAGGAGGGTCAGCACCCTGGCCAACA...GGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR TCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGGAAGAAGCTGTCGCTaGCTCTGCGCGCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQGRSCR*LCAQAS
Trigger: AGAAGCCTGCGCGCAGAGTCAGCGACAGCTTCTTCC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGGGTGGTCCAGGCCTCTaGAGGCCAACTCATTGGCAG +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEGGPGL*RPTHWQ
Trigger: CTGCCAATGAGTTGGCCTGCAGAGGCCTGGACCACC...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGGTGGTCCAGGCCTCTaGAGGCCAACTCATTGGCAG +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESGGPGL*RPTHWQ
Trigger: CTGCCAATGAGTTGGCCTGCAGAGGCCTGGACCACC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCACTCATCCTGAGAGGCTaGCAGGTTGTGCAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRALILRG*QVVQPG
Trigger: CCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAG...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGGTGCCCAGGTCACTaGGGAGATGGTGTTCCGGAG +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESRCPGH*GDGVPE
Trigger: CTCCGGAACACCATCTCCGCAGTGACCTGGGCACCT...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAAGGTGCCCAGGTCACTaGGGAGATGGTGTTCCGGAG +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRARCPGH*GDGVPE
Trigger: CTCCGGAACACCATCTCCGCAGTGACCTGGGCACCT...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GCTGAGGATTGGAGAAGGGTCTTCAGGTACTGGACAAAAGGAGGGCTTATATCTGGATCCTTCCCACCGTaGCCAGCACAGCCGCAGGTG +
Preference number: 4 (lower is better)
Translates to: AEDWRRVFRYWTKGGLISGSFPP*PAQPQV
Trigger: CACCTGCGGCTGTGCTGGGCACGGTGGGAAGGATCC...AGATATAAGCCCTCCTTTTGTCCAGTACCTGAAGACCCTTCTCCAATCCTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR CCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGGAGGCCACCAGGGGGTaGGCTTCTTTGGTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEEATRG*ASLVLL
Trigger: CAACAGCACCAAAGAAGCCCACCCCCTGGTGGCCTC...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GATTTCTCAGTGATGCTGAGAGTATCCTCAGCCCTGCCAAGAGACGGGACTTTCGAGGCCACCAGGGGGTaGGCTTCTTTGGTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: DFSVMLRVSSALPRDGTFEATRG*ASLVLL
Trigger: CAACAGCACCAAAGAAGCCCACCCCCTGGTGGCCTC...GAAAGTCCCGTCTCTTGGCAGGGCTGAGGATACTCTCAGCATCACTGAGAAATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCTTGGCAGCTGTGAACTaGGTGGACAGCCGACGGACC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESLAAVN*VDSRRT
Trigger: GGTCCGTCGGCTGTCCACCCAGTTCACAGCTGCCAA...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGCACATGGCCAGAGAGTaGCCCTGCTTCAGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEHMARE*PCFRAH
Trigger: ATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTG...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGGAGACAGCCTGGGCTaGTGTGAGGTGCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQGDSLG*CEVQDP
Trigger: AGGATCCTGCACCTCACACCAGCCCAGGCTGTCTCC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGGAGACAGCCTGGGCTaGTGTGAGGTGCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESGDSLG*CEVQDP
Trigger: AGGATCCTGCACCTCACACCAGCCCAGGCTGTCTCC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TGCAGGGGAGAGAGACTCAGAAACTGGAGCTGCCGTCTAAATAAACACACAAAGCTCTTCTTGCGCAGCTaGCTGTACTGCGCGCGGCCC +
Preference number: 4 (lower is better)
Translates to: CRGERLRNWSCRLNKHTKLFLRS*LYCARP
Trigger: GGGCCGCGCGCAGTACAGCCAGCTGCGCAAGAAGAG...CTTTGTGTGTTTATTTAGACGGCAGCTCCAGTTTCTGAGTCTCTCTCCCCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACTCCGGAAGAAGGGGCTaGCTCCTTGTCTGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDSGRRG*LLVWWQ
Trigger: CTGCCACCAGACAAGGAGTCAGCCCCTTCTTCCGGA...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCATCATGGCTCTCATCCTaGGAGGCTGCCAGGTTGTGC +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRASWLSS*EAARLC
Trigger: GCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGA...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCTGGAGCACGTTCTCCTaGTCAGGGAGGTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESWSTFS*SGRSPS
Trigger: GGATGGAGACCTCCCTGAGCAGGAGAACGTGCTCCA...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGTGGAGCACGTTCTCCTaGTCAGGGAGGTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEWSTFS*SGRSPS
Trigger: GGATGGAGACCTCCCTGAGCAGGAGAACGTGCTCCA...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GATTTCTCAGTGATGCTGAGAGTATCCTCAGCCCTGCCAAGAGACGGGACTTTCTGGAGCACGTTCTCCTaGTCAGGGAGGTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: DFSVMLRVSSALPRDGTFWSTFS*SGRSPS
Trigger: GGATGGAGACCTCCCTGAGCAGGAGAACGTGCTCCA...GAAAGTCCCGTCTCTTGGCAGGGCTGAGGATACTCTCAGCATCACTGAGAAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCACTCACCACAGGCAGCTaGAGAACTCTCTGGAGCACG +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRALTTGS*RTLWST
Trigger: CGTGCTCCAGAGAGTTCTGCAGCTGCCTGTGGTGAG...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TGCAGGGGAGAGAGACTCAGAAACTGGAGCTGCCGTCTAAATAAACACACAAAGGCCAGAGAGTGGCCCTaGTTCAGGGCCCATGCTGTG +
Preference number: 4 (lower is better)
Translates to: CRGERLRNWSCRLNKHTKAREWP*FRAHAV
Trigger: CACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGC...CTTTGTGTGTTTATTTAGACGGCAGCTCCAGTTTCTGAGTCTCTCTCCCCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACCTCATCCTGAGAGGCTaGCAGGTTGTGCAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDLILRG*QVVQPG
Trigger: CCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAG...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CAAAAGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCTCATCCTGAGAGGCTaGCAGGTTGTGCAGCCAGGG +
Preference number: 4 (lower is better)
Translates to: QKMATAGSQHLGNQFQGDLILRG*QVVQPG
Trigger: CCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAG...GTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCTTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGCTGGGGAGGTATTTTGGGCTGGGAAGGATCAGTGTATAAGAAGGTTCTGAACAGGTGCCCAGGTCACTaGGGAGATGGTGTTCCGGAG +
Preference number: 4 (lower is better)
Translates to: GWGGILGWEGSVYKKVLNRCPGH*GDGVPE
Trigger: CTCCGGAACACCATCTCCGCAGTGACCTGGGCACCT...GTTCAGAACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR CCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGGCTTGGTTTGGCCTTaGGAGCCTTCTGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQGLVWP*EPSGSS
Trigger: AGAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGGCTTGGTTTGGCCTTaGGAGCCTTCTGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRAGLVWP*EPSGSS
Trigger: AGAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCC...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTAGGACCCGGCTTGGTTTGGCCTTaGGAGCCTTCTGGGTCCTCT +
Preference number: 4 (lower is better)
Translates to: SLFFFHGLDNKLTSLLGPGLVWP*EPSGSS
Trigger: AGAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCC...GGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp CTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTAGGACCCCTGGCTTTATGCCTCCTCACAAGGCTTaGTTTGGCCTTGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LPWPGQQAYQPLRTPGFMPPHKA*FGLGSL
Trigger: AAGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGG...CATAAAGCCAGGGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
3UTR CAA 72 bp TTGTCCCCACCACACCCGGACCTCTCCCAACATTCTTaGGCTGTCATTGTTAGCCTAAGATACCCCAGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPPHPDLSQHS*AVIVSLRYPRL
Trigger: CAGCCTGGGGTATCTTAGGCTAACAATGACAGCCAAAGAATGTTGGGAGAGGTCCGGGTGTGGTGGGGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR TCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACTCATGGCTCTCATCCTaGGAGGCTGCCAGGTTGTGC +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDSWLSS*EAARLC
Trigger: GCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGA...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GACAGACCGACAAGCAGAGATGCAGACATGCGGGGAGTATCAGTGAACAGGCAGGGTGGGCTTCTTTGGTaGTGTTGTAGGTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: DRPTSRDADMRGVSVNRQGGLLW*CCRSSG
Trigger: TCCAGAAGACCTACAACAGCACCAAAGAAGCCCACC...CTGCCTGTTCACTGATACTCCCCGCATGTCTGCATCTCTGCTTGTCGGTCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR GCA 90 bp TTTGCATCATGTCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCGGTGGTCCAGGCCTCTaGAGGCCAACTCATTGGCAG +
Preference number: 4 (lower is better)
Translates to: FASCPFSSSMAWTTSLPAGGPGL*RPTHWQ
Trigger: CTGCCAATGAGTTGGCCTGCAGAGGCCTGGACCACC...GGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGACATGATGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp CTGGGGAATCAATTTCAAGGTGACCACACAGGCAGGAGTGATGACATGGAAAAGGAGGCCACCAGGGGGTaGGCTTCTTTGGTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: LGNQFQGDHTGRSDDMEKEATRG*ASLVLL
Trigger: CAACAGCACCAAAGAAGCCCACCCCCTGGTGGCCTC...CTTTTCCATGTCATCACTCCTGCCTGTGTGGTCACCTTGAAATTGATTCCCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CTGGGGAATCAATTTCAAGGTGACCACACAGGCAGGAGTGATGACATGGAAAAGTTGGCAGCTGTGAACTaGGTGGACAGCCGACGGACC +
Preference number: 4 (lower is better)
Translates to: LGNQFQGDHTGRSDDMEKLAAVN*VDSRRT
Trigger: GGTCCGTCGGCTGTCCACCCAGTTCACAGCTGCCAA...CTTTTCCATGTCATCACTCCTGCCTGTGTGGTCACCTTGAAATTGATTCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAATCACAAGGCTTGGTTTaGCCTTGGGAGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQSQGLV*PWEPSG
Trigger: CCCAGAAGGCTCCCAAGGCCAAACCAAGCCTTGTGA...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGCCTCCTCACAAGGCTTaGTTTGGCCTTGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEPPHKA*FGLGSL
Trigger: AAGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGG...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCCATCAGGGACAGCCTaGGAAGCGGCACATAGTGTA +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESPSGTA*EAAHSV
Trigger: TACACTATGTGCCGCTTCCCAGGCTGTCCCTGATGG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GCTGAGGATTGGAGAAGGGTCTTCAGGTACTGGACAAAAGGAGGGCTTATATCTTTGGGAGTCAGAAGGTaGCCCTGGGGCAGGACTCAC +
Preference number: 4 (lower is better)
Translates to: AEDWRRVFRYWTKGGLISLGVRR*PWGRTH
Trigger: GTGAGTCCTGCCCCAGGGCCACCTTCTGACTCCCAA...AGATATAAGCCCTCCTTTTGTCCAGTACCTGAAGACCCTTCTCCAATCCTCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
3UTR CAA 72 bp CAAAGGCAGGGATGGGGATTGGGCTGGGGAGGTATTTaGGGCTGGGAAGGATCAGTGTATAAGAAGGTTCTG +
Preference number: 4 (lower is better)
Translates to: QRQGWGLGWGGI*GWEGSVYKKVL
Trigger: CAGAACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATCCCCATCCCTGCCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR TCA 90 bp GCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACACAGGCTTTTCTGGAGGGTATTaGAGAGCCGGGATCTTTTCC +
Preference number: 4 (lower is better)
Translates to: ATAGSQHLGNQFQGDHTGFSGGY*RAGIFS
Trigger: GGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAA...GCCTGTGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp CTGGGGAATCAATTTCAAGGTGACCACACAGGCAGGAGTGATGACATGGAAAAGTCATGGCTCTCATCCTaGGAGGCTGCCAGGTTGTGC +
Preference number: 4 (lower is better)
Translates to: LGNQFQGDHTGRSDDMEKSWLSS*EAARLC
Trigger: GCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGA...CTTTTCCATGTCATCACTCCTGCCTGTGTGGTCACCTTGAAATTGATTCCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGTTGGCGGCATATTCTaGTGTCTCTTTGGCCATCCC +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESVGGIF*CLFGHP
Trigger: GGGATGGCCAAAGAGACAGCAGAATATGCCGCCAAC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGTTGGCGGCATATTCTaGTGTCTCTTTGGCCATCCC +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQVGGIF*CLFGHP
Trigger: GGGATGGCCAAAGAGACAGCAGAATATGCCGCCAAC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTAGGACCCCTGGTTGGCGGCATATTCTaGTGTCTCTTTGGCCATCCC +
Preference number: 4 (lower is better)
Translates to: LFFFHGLDNKLTSLLGPLVGGIF*CLFGHP
Trigger: GGGATGGCCAAAGAGACAGCAGAATATGCCGCCAAC...CAGGGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR GCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGAGGCTGCCAGGTTGTaGAGCCAGGGCACCCGCACC +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVEAARL*SQGTRT
Trigger: GGTGCGGGTGCCCTGGCTGCACAACCTGGCAGCCTC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGCGCCCCGGACCCTTTaGGCTCCGCCTCTGCTGAAG +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVAPRTL*APPLLK
Trigger: CTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp ATCCTAACTGTATCAAGAAGAATAGAGCAGCAGCTTTACCTGGGTATCCTGGGGGACACTCACCAGGGGTaGCACACCCGGGATCCACAT +
Preference number: 4 (lower is better)
Translates to: ILTVSRRIEQQLYLGILGDTHQG*HTRDPH
Trigger: ATGTGGATCCCGGGTGTGGCACCCCTGGTGAGTGTC...CCCCAGGATACCCAGGTAAAGCTGCTGCTCTATTCTTCTTGATACAGTTAGGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp AAGACCAGGAGGTCGGATATAGGTAAGCAAGGGAAGCAGTCAGGGAGGTGTACAAGCTGCAGAACTCTCTaGAGCACGTTCTCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: KTRRSDIGKQGKQSGRCTSCRTL*STFSCS
Trigger: TGAGCAGGAGAACGTGCTCCAGAGAGTTCTGCAGCT...TGTACACCTCCCTGACTGCTTCCCTTGCTTACCTATATCCGACCTCCTGGTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR CCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGCTGCAGAACTCTCTaGAGCACGTTCTCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESSCRTL*STFSCS
Trigger: TGAGCAGGAGAACGTGCTCCAGAGAGTTCTGCAGCT...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACCCTCCTCACAAGGCTTaGTTTGGCCTTGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDPPHKA*FGLGSL
Trigger: AAGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGG...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CTCTTAGGACCCCTGGCTTTATGTCTAAAGTCTCAGTCCAGCTTGAAGGATGTTCACATGGCCAGAGAGTaGCCCTGCTTCAGGGCCCAT +
Preference number: 4 (lower is better)
Translates to: LLGPLALCLKSQSSLKDVHMARE*PCFRAH
Trigger: ATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTG...AACATCCTTCAAGCTGGACTGAGACTTTAGACATAAAGCCAGGGGTCCTAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp ACTAGGGACTCACAAACAAATGATTCTATCATCAAGTGGGAGGCAAAGGCAGGGGGAGACAGCCTGGGCTaGTGTGAGGTGCAGGATCCT +
Preference number: 4 (lower is better)
Translates to: TRDSQTNDSIIKWEAKAGGDSLG*CEVQDP
Trigger: AGGATCCTGCACCTCACACCAGCCCAGGCTGTCTCC...CCCTGCCTTTGCCTCCCACTTGATGATAGAATCATTTGTTTGTGAGTCCCTAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACCCATCAGGGACAGCCTaGGAAGCGGCACATAGTGTA +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDPSGTA*EAAHSV
Trigger: TACACTATGTGCCGCTTCCCAGGCTGTCCCTGATGG...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp AAGGTGGTGGGGCAGGGCCACACCTCAGTTTGCATCATGTCCCTTTTCTTCTTCTTTTCTGGAGGGTATTaGAGAGCCGGGATCTTTTCC +
Preference number: 4 (lower is better)
Translates to: KVVGQGHTSVCIMSLFFFFSGGY*RAGIFS
Trigger: GGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAA...GAAGAAGAAAAGGGACATGATGCAAACTGAGGTGTGGCCCTGCCCCACCACCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR GCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGGTGGGCTTCTTTGGTaGTGTTGTAGGTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQGGLLW*CCRSSG
Trigger: TCCAGAAGACCTACAACAGCACCAAAGAAGCCCACC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGGGTGGGCTTCTTTGGTaGTGTTGTAGGTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEGGLLW*CCRSSG
Trigger: TCCAGAAGACCTACAACAGCACCAAAGAAGCCCACC...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCACTTGTCAGAGGTGCTTaGAATGGGCACACTGATGCT +
Preference number: 4 (lower is better)
Translates to: LMVKPPKDALDMMCASRALVRGA*NGHTDA
Trigger: AGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAG...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGCCCATGCTGTGGTTTaGATGGTGTGTCGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESAHAVV*MVCRER
Trigger: TCTTTCTCGACACACCATGCAAACCACAGCATGGGC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGGATCCTTCCCACCGTaGCCAGCACAGCCGCAGGTG +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVGSFPP*PAQPQV
Trigger: CACCTGCGGCTGTGCTGGGCACGGTGGGAAGGATCC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACAGCTGCAGAACTCTCTaGAGCACGTTCTCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDSCRTL*STFSCS
Trigger: TGAGCAGGAGAACGTGCTCCAGAGAGTTCTGCAGCT...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGCGCAGCCGGCCAGAGTaGCCCCCAGAACCTTGTCAG +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVRSRPE*PPEPCQ
Trigger: CTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCG...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAATTCTGCTGTCTCTTTaGCCATCCCCAAGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQILLSL*PSPRQA
Trigger: AGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAAT...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR CAA 72 bp AAATGGAACCAGCCTGGACCAAATAGGGAGACATTATaGAAAAAGGAGCTGGGCAGTGGTGGCGCACGCCTT +
Preference number: 4 (lower is better)
Translates to: KWNQPGPNRETL*KKELGSGGARL
Trigger: AAGGCGTGCGCCACCACTGCCCAGCTCCTTTTTCAATAATGTCTCCCTATTTGGTCCAGGCTGGTTCCATTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGTTTTCTGGAGGGTATTaGAGAGCCGGGATCTTTTCC +
Preference number: 4 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEFSGGY*RAGIFS
Trigger: GGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAA...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR TCA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAATTTTCTGGAGGGTATTaGAGAGCCGGGATCTTTTCC +
Preference number: 4 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQFSGGY*RAGIFS
Trigger: GGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAA...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACGCCCATGCTGTGGTTTaGATGGTGTGTCGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDAHAVV*MVCRER
Trigger: TCTTTCTCGACACACCATGCAAACCACAGCATGGGC...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACATTCTGCTGTCTCTTTaGCCATCCCCAAGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: RRGRRSHERICPRERRVDILLSL*PSPRQA
Trigger: AGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAAT...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp CAGCCTCTTAGGACCCCTGGCTTTATGTCTAAAGTCTCAGTCCAGCTTGAAGGAATTCTGCTGTCTCTTTaGCCATCCCCAAGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: QPLRTPGFMSKVSVQLEGILLSL*PSPRQA
Trigger: AGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAAT...TCCTTCAAGCTGGACTGAGACTTTAGACATAAAGCCAGGGGTCCTAAGAGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR TCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGGAAGAAGCTGTCGCTaGCTCTGCGCGCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVGRSCR*LCAQAS
Trigger: AGAAGCCTGCGCGCAGAGTCAGCGACAGCTTCTTCC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TGCAGGGGAGAGAGACTCAGAAACTGGAGCTGCCGTCTAAATAAACACACAAAGCTTGTCAGAGGTGCTTaGAATGGGCACACTGATGCT +
Preference number: 4 (lower is better)
Translates to: CRGERLRNWSCRLNKHTKLVRGA*NGHTDA
Trigger: AGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAG...CTTTGTGTGTTTATTTAGACGGCAGCTCCAGTTTCTGAGTCTCTCTCCCCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGAGGCCACCAGGGGGTaGGCTTCTTTGGTGCTGTTG +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVEATRG*ASLVLL
Trigger: CAACAGCACCAAAGAAGCCCACCCCCTGGTGGCCTC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTTGGCAGCTGTGAACTaGGTGGACAGCCGACGGACC +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVLAAVN*VDSRRT
Trigger: GGTCCGTCGGCTGTCCACCCAGTTCACAGCTGCCAA...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp ATCCTAACTGTATCAAGAAGAATAGAGCAGCAGCTTTACCTGGGTATCCTGGGGCTTGTCAGAGGTGCTTaGAATGGGCACACTGATGCT +
Preference number: 4 (lower is better)
Translates to: ILTVSRRIEQQLYLGILGLVRGA*NGHTDA
Trigger: AGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAG...CCCCAGGATACCCAGGTAAAGCTGCTGCTCTATTCTTCTTGATACAGTTAGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR GCA 90 bp TCAGTTTGCATCATGTCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCGCCCATGCTGTGGTTTaGATGGTGTGTCGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: SVCIMSLFFFHGLDNKLTAHAVV*MVCRER
Trigger: TCTTTCTCGACACACCATGCAAACCACAGCATGGGC...GGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGACATGATGCAAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR GCA 90 bp ATGAACATATGTGCTCTATGTATGATATACCGTATTAAGCAAAAGATGGCCACTCAGGCTGCTCAGGGGTaGCACACCCGGGATCCACAT +
Preference number: 4 (lower is better)
Translates to: MNICALCMIYRIKQKMATQAAQG*HTRDPH
Trigger: ATGTGGATCCCGGGTGTGGCACCCCTGAGCAGCCTG...AGTGGCCATCTTTTGCTTAATACGGTATATCATACATAGAGCACATATGTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTCACAAGGCTTGGTTTaGCCTTGGGAGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVSQGLV*PWEPSG
Trigger: CCCAGAAGGCTCCCAAGGCCAAACCAAGCCTTGTGA...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp GTTTTGTTTGTGGGTGACACTTCTACTGTTTTAATAGCAAATAGGGCTGGGAAGTCACAAGGCTTGGTTTaGCCTTGGGAGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: VLFVGDTSTVLIANRAGKSQGLV*PWEPSG
Trigger: CCCAGAAGGCTCCCAAGGCCAAACCAAGCCTTGTGA...CTTCCCAGCCCTATTTGCTATTAAAACAGTAGAAGTGTCACCCACAAACAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGCCTCCTCACAAGGCTTaGTTTGGCCTTGGGAGCCTT +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVPPHKA*FGLGSL
Trigger: AAGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGG...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR CAA 72 bp TGGTTTGTGATACTGCAGCTTCTGTTACATTTGGAGTaGGAGTGGCTAAATGTCCTGCCACTGGTCCTACTC +
Preference number: 4 (lower is better)
Translates to: WFVILQLLLHLE*EWLNVLPLVLL
Trigger: GAGTAGGACCAGTGGCAGGACATTTAGCCACTCCAACTCCAAATGTAACAGAAGCTGCAGTATCACAAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
3UTR CAA 72 bp TTCTGCTGGTTTGTGATACTGCAGCTTCTGTTACATTaGGAGTTGGAGTGGCTAAATGTCCTGCCACTGGTC +
Preference number: 4 (lower is better)
Translates to: FCWFVILQLLLH*ELEWLNVLPLV
Trigger: GACCAGTGGCAGGACATTTAGCCACTCCAACTCCAAATGTAACAGAAGCTGCAGTATCACAAACCAGCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR TCA 90 bp AAGGGAATTTTAGAACTAGTCAGGTGTCACTTGGCAACAAGTTTTGTTAAAGAAGGAAGAAGCTGTCGCTaGCTCTGCGCGCAGGCTTCT +
Preference number: 4 (lower is better)
Translates to: KGILELVRCHLATSFVKEGRSCR*LCAQAS
Trigger: AGAAGCCTGCGCGCAGAGTCAGCGACAGCTTCTTCC...TTCTTTAACAAAACTTGTTGCCAAGTGACACCTGACTAGTTCTAAAATTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AAGGGAATTTTAGAACTAGTCAGGTGTCACTTGGCAACAAGTTTTGTTAAAGAAAGGTGCCCAGGTCACTaGGGAGATGGTGTTCCGGAG +
Preference number: 4 (lower is better)
Translates to: KGILELVRCHLATSFVKERCPGH*GDGVPE
Trigger: CTCCGGAACACCATCTCCGCAGTGACCTGGGCACCT...TTCTTTAACAAAACTTGTTGCCAAGTGACACCTGACTAGTTCTAAAATTCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGAGCTGCAGAACTCTCTaGAGCACGTTCTCCTGCTCA +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVSCRTL*STFSCS
Trigger: TGAGCAGGAGAACGTGCTCCAGAGAGTTCTGCAGCT...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGGGGGTGGGCTTCTTTaGTGCTGTTGTAGGTCTTCT +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVGGGLL*CCCRSS
Trigger: AGAAGACCTACAACAGCACCAAAGAAGCCCACCCCC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGGTGGGCTTCTTTGGTaGTGTTGTAGGTCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVGGLLW*CCRSSG
Trigger: TCCAGAAGACCTACAACAGCACCAAAGAAGCCCACC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGCTTGTCAGAGGTGCTTaGAATGGGCACACTGATGCT +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVLVRGA*NGHTDA
Trigger: AGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAG...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGCCCATGCTGTGGTTTaGATGGTGTGTCGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVAHAVV*MVCRER
Trigger: TCTTTCTCGACACACCATGCAAACCACAGCATGGGC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
3UTR CAA 72 bp TTAAGTGGAGCCTTTAAGTCTTCCTTGCCTGGTTACTaGGGTAGAATTCTCACATACCCACAAGCCTCTATC +
Preference number: 4 (lower is better)
Translates to: LSGAFKSSLPGY*GRILTYPQASI
Trigger: GATAGAGGCTTGTGGGTATGTGAGAATTCTACCCAAGTAACCAGGCAAGGAAGACTTAAAGGCTCCACTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR CCA 90 bp AAGGGAATTTTAGAACTAGTCAGGTGTCACTTGGCAACAAGTTTTGTTAAAGAATCACAAGGCTTGGTTTaGCCTTGGGAGCCTTCTGGG +
Preference number: 4 (lower is better)
Translates to: KGILELVRCHLATSFVKESQGLV*PWEPSG
Trigger: CCCAGAAGGCTCCCAAGGCCAAACCAAGCCTTGTGA...TTCTTTAACAAAACTTGTTGCCAAGTGACACCTGACTAGTTCTAAAATTCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR GCA 90 bp AAGGGAATTTTAGAACTAGTCAGGTGTCACTTGGCAACAAGTTTTGTTAAAGAAGTTGGCGGCATATTCTaGTGTCTCTTTGGCCATCCC +
Preference number: 4 (lower is better)
Translates to: KGILELVRCHLATSFVKEVGGIF*CLFGHP
Trigger: GGGATGGCCAAAGAGACAGCAGAATATGCCGCCAAC...TTCTTTAACAAAACTTGTTGCCAAGTGACACCTGACTAGTTCTAAAATTCCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
3UTR CAA 72 bp ACAGAGAAGGGAATTTTAGAACTAGTCAGGTGTCACTaGGCAACAAGTTTTGTTAAAGAAGTGAGAAATCCA +
Preference number: 4 (lower is better)
Translates to: TEKGILELVRCH*ATSFVKEVRNP
Trigger: TGGATTTCTCACTTCTTTAACAAAACTTGTTGCCAAGTGACACCTGACTAGTTCTAAAATTCCCTTCTCTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS GCA 90 bp GGGCACCCGCACCTCACTCTGCCGCCGGGACACCACCTGCATGGCTaGCGATGCGCCCCACTGGGCCAGGCTGCTCAGGGGTGCCACACC +
Preference number: 5 (lower is better)
Translates to: GHPHLTLPPGHHLHG*RCAPLGQAAQGCHT
Trigger: GGTGTGGCACCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGTGCCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 90 bp GCCAGGGCACCCGCACCTCACTCTGCCGCCGGGACACCACCTGCATaGCTGCCGATGCGCCCCACTGGGCCAGGCTGCTCAGGGGTGCCA +
Preference number: 5 (lower is better)
Translates to: ARAPAPHSAAGTPPA*LPMRPTGPGCSGVP
Trigger: TGGCACCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGTGCCCTGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 90 bp TGCAGCCAGGGCACCCGCACCTCACTCTGCCGCCGGGACACCACCTaGATGGCTGCCGATGCGCCCCACTGGGCCAGGCTGCTCAGGGGT +
Preference number: 5 (lower is better)
Translates to: CSQGTRTSLCRRDTT*MAADAPHWARLLRG
Trigger: ACCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGTGCCCTGGCTGCA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS TCA 90 bp CGGGCTGGCGGGCCGCGCCCCGGACCCTTTGCGCTCCGCCTCTGCTaGAGGGTTATCGATGTCTCGGAATTCGCTCTCGGGCTCCATCAG +
Preference number: 5 (lower is better)
Translates to: RAGGPRPGPFALRLC*RVIDVSEFALGLHQ
Trigger: CTGATGGAGCCCGAGAGCGAATTCCGAGACATCGATAACCCTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGCGGCCCGCCAGCCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 90 bp CCCACTGGGCCAGGCTGCTCAGGGGTGCCACACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCTTCAGGGCCCATGCTGTGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: PTGPGCSGVPHPGST*PESGPASGPMLWFA
Trigger: TGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGAGCAGCCTGGCCCAGTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 90 bp CCCTCCAGAGGCCAGTCGGCCAACCCGGGTGTTGGCGGCATATTCTaGTGTCTCTTTGGCCATCCCCAAGGCAAGCTCGCAGCCGGCCAG +
Preference number: 5 (lower is better)
Translates to: PSRGQSANPGVGGIF*CLFGHPQGKLAAGQ
Trigger: CTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGCCTCTGGAGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 90 bp TCAGAGCAGGGCCAGGGGGAACTCGGAGCAGACACTCACCAGGGGTaGCACACCCGGGATCCACATGGCCAGAGAGTGGCCCTGCTTCAG +
Preference number: 5 (lower is better)
Translates to: SEQGQGELGADTHQG*HTRDPHGQRVALLQ
Trigger: CTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGGTGAGTGTCTGCTCCGAGTTCCCCCTGGCCCTGCTCTGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS CCA 90 bp CCAGTCGGCCAACCCGGGTGTTGGCGGCATATTCTGCTGTCTCTTTaGCCATCCCCAAGGCAAGCTCGCAGCCGGCCAGAGTGGCCCCCA +
Preference number: 5 (lower is better)
Translates to: PVGQPGCWRHILLSL*PSPRQARSRPEWPP
Trigger: TGGGGGCCACTCTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 90 bp TCCCTCTGTGTCTGTCTGGTCGTCATGGCTCTCATCCTGAGAGGCTaGCAGGTTGTGCAGCCAGGGCACCCGCACCTCACTCTGCCGCCG +
Preference number: 5 (lower is better)
Translates to: SLCVCLVVMALILRG*QVVQPGHPHLTLPP
Trigger: CGGCGGCAGAGTGAGGTGCGGGTGCCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGACGACCAGACAGACACAGAGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 90 bp GCAGGTGCCCAGGTCACTGCGGAGATGGTGTTCCGGAGAGTGTTCTaGACGGTGTGTACCACACCACCCAGGAGGCCTCTCGGGTTGGGC +
Preference number: 5 (lower is better)
Translates to: AGAQVTAEMVFRRVF*TVCTTPPRRPLGLG
Trigger: GCCCAACCCGAGAGGCCTCCTGGGTGGTGTGGTACACACCGTGCAGAACACTCTCCGGAACACCATCTCCGCAGTGACCTGGGCACCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205553.2
ENSMUST00000205915.2
CDS GCA 90 bp TGTGAGGTGCAGGATCCTTCCCACCGTGCCCAGCACAGCCGCAGGTaGCCAGGTCACTGCGGAGATGGTGTTCCGGAGAGTGTTCTGCAC +
Preference number: 5 (lower is better)
Translates to: CEVQDPSHRAQHSRR*PGHCGDGVPESVLH
Trigger: GTGCAGAACACTCTCCGGAACACCATCTCCGCAGTGACCTGGGCACCTGCGGCTGTGCTGGGCACGGTGGGAAGGATCCTGCACCTCACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205553.2
ENSMUST00000205915.2
CDS CCA 90 bp AGGCTGCTCAGGGGTGCCACACCCGGGATCCACATGGCCAGAGAGTaGCCCTGCTTCAGGGCCCATGCTGTGGTTTGCATGGTGTGTCGA +
Preference number: 5 (lower is better)
Translates to: RLLRGATPGIHMARE*PCFRAHAVVCMVCR
Trigger: TCGACACACCATGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGAGCAGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 90 bp ACTCGGAGCAGACACTCACCAGGGGTGCCACACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCTTCAGGGCCCATGCTGTGGTTTGCA +
Preference number: 5 (lower is better)
Translates to: TRSRHSPGVPHPGST*PESGPASGPMLWFA
Trigger: TGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGGTGAGTGTCTGCTCCGAGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS TCA 90 bp GTCTCCTCTCCCTCTGTGTCTGTCTGGTCGTCATGGCTCTCATCCTaGGAGGCTGCCAGGTTGTGCAGCCAGGGCACCCGCACCTCACTC +
Preference number: 5 (lower is better)
Translates to: VSSPSVSVWSSWLSS*EAARLCSQGTRTSL
Trigger: GAGTGAGGTGCGGGTGCCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGACGACCAGACAGACACAGAGGGAGAGGAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 90 bp ACAGCCGACGGACCACCGGCTCCATGCTCCAGGCAGCCAGGTTGCTaGCACCCTGTACACCCTTCTCATAGGCATTGCACACAGAGGCCA +
Preference number: 5 (lower is better)
Translates to: TADGPPAPCSRQPGC*HPVHPSHRHCTQRP
Trigger: TGGCCTCTGTGTGCAATGCCTATGAGAAGGGTGTACAGGGTGCCAGCAACCTGGCTGCCTGGAGCATGGAGCCGGTGGTCCGTCGGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205413.2
ENSMUST00000205747.2
ENSMUST00000205915.2
CDS CCA 90 bp GAGCCAGATCAGCCCCTCCAGAGGCCAGTCGGCCAACCCGGGTGTTaGCGGCATATTCTGCTGTCTCTTTGGCCATCCCCAAGGCAAGCT +
Preference number: 5 (lower is better)
Translates to: EPDQPLQRPVGQPGC*RHILLSLWPSPRQA
Trigger: AGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGCCTCTGGAGGGGCTGATCTGGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 90 bp ACACTCACCAGGGGTGCCACACCCGGGATCCACATGGCCAGAGAGTaGCCCTGCTTCAGGGCCCATGCTGTGGTTTGCATGGTGTGTCGA +
Preference number: 5 (lower is better)
Translates to: TLTRGATPGIHMARE*PCFRAHAVVCMVCR
Trigger: TCGACACACCATGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGGTGAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp GCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGCAGGTGGAAGGCTTGGTTTGGCCTaGGGAGCCTTCTGGGTCCTC +
Preference number: 5 (lower is better)
Translates to: AVVAHAFSSSTWEAEAGGRLGLA*GAFWVL
Trigger: GAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCCT...TCCACCTGCCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS CCA 90 bp GTGCTGACCCTCCTCACAAGGCTTGGTTTGGCCTTGGGAGCCTTCTaGGTCCTCTGCCGTCCGGAAGAAGGGGCTGACTCCTTGTCTGGT +
Preference number: 5 (lower is better)
Translates to: VLTLLTRLGLALGAF*VLCRPEEGADSLSG
Trigger: ACCAGACAAGGAGTCAGCCCCTTCTTCCGGACGGCAGAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGGGTCAGCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 90 bp CTGACTCCTTGTCTGGTGGCAGGAGGAACTCTACCACCTTCTCGATaGTTCCCAGAGCCAGATCAGCCCCTCCAGAGGCCAGTCGGCCAA +
Preference number: 5 (lower is better)
Translates to: LTPCLVAGGTLPPSR*FPEPDQPLQRPVGQ
Trigger: TTGGCCGACTGGCCTCTGGAGGGGCTGATCTGGCTCTGGGAAGCATCGAGAAGGTGGTAGAGTTCCTCCTGCCACCAGACAAGGAGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 90 bp CACATGGCCAGAGAGTGGCCCTGCTTCAGGGCCCATGCTGTGGTTTaGATGGTGTGTCGAGAAAGAGTGTTGGCCAGGGTGCTGACCCTC +
Preference number: 5 (lower is better)
Translates to: HMAREWPCFRAHAVV*MVCRERVLARVLTL
Trigger: GAGGGTCAGCACCCTGGCCAACACTCTTTCTCGACACACCATGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 90 bp ACCCGGGATCCACATGGCCAGAGAGTGGCCCTGCTTCAGGGCCCATaGTGTGGTTTGCATGGTGTGTCGAGAAAGAGTGTTGGCCAGGGT +
Preference number: 5 (lower is better)
Translates to: TRDPHGQRVALLQGP*CGLHGVSRKSVGQG
Trigger: ACCCTGGCCAACACTCTTTCTCGACACACCATGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 90 bp AAGCACTCACAGGTCCCGCTCACCACAGGCAGCTGCAGAACTCTCTaGAGCACGTTCTCCTGCTCAGGGAGGTCTCCATCCAGCAGGGTT +
Preference number: 5 (lower is better)
Translates to: KHSQVPLTTGSCRTL*STFSCSGRSPSSRV
Trigger: AACCCTGCTGGATGGAGACCTCCCTGAGCAGGAGAACGTGCTCCAGAGAGTTCTGCAGCTGCCTGTGGTGAGCGGGACCTGTGAGTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205413.2
ENSMUST00000205747.2
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GGAGCTGGGCAGTGGTGGCGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGTATTCTGCTGTCTCTTaGGCCATCCCCAAGGCAAGC +
Preference number: 5 (lower is better)
Translates to: GAGQWWRTPLVPALGRQRYSAVS*AIPKAS
Trigger: GCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATA...CCTCTGCCTCCCAAGTGCTGGAACTAAAGGCGTGCGCCACCACTGCCCAGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCACTCCAGGCAGCCAGGTaGCTGGCACCCTGTACACCC +
Preference number: 5 (lower is better)
Translates to: LMVKPPKDALDMMCASRALQAAR*LAPCTP
Trigger: GGGTGTACAGGGTGCCAGCAACCTGGCTGCCTGGAG...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACACAGGCGACATGGCCCTCCCTTaGGTAGAGGAGACAGCCTGG +
Preference number: 5 (lower is better)
Translates to: ATAGSQHLGNQFQGDHTGDMALP*VEETAW
Trigger: CCAGGCTGTCTCCTCTACCAAAGGGAGGGCCATGTC...GCCTGTGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAAGGAGGCCTCTCGGGTaGGGCAGGGCTGTAACCTCT +
Preference number: 5 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQRRPLG*GRAVTS
Trigger: AGAGGTTACAGCCCTGCCCAACCCGAGAGGCCTCCT...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGGAGGCCTCTCGGGTaGGGCAGGGCTGTAACCTCT +
Preference number: 5 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESRRPLG*GRAVTS
Trigger: AGAGGTTACAGCCCTGCCCAACCCGAGAGGCCTCCT...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGGAGGCCTCTCGGGTaGGGCAGGGCTGTAACCTCT +
Preference number: 5 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLERRPLG*GRAVTS
Trigger: AGAGGTTACAGCCCTGCCCAACCCGAGAGGCCTCCT...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS TCA 90 bp GAGATGGTGCCCTTCAGTTCAGAGGCGATCTTTTCTGGAGGGTATTaGAGAGCCGGGATCTTTTCCTCCAGGTGGTCCAGGCCTCTGCAG +
Preference number: 5 (lower is better)
Translates to: EMVPFSSEAIFSGGY*RAGIFSSRWSRPLQ
Trigger: CTGCAGAGGCCTGGACCACCTGGAGGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAAGATCGCCTCTGAACTGAAGGGCACCATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 90 bp TATCGATGTCTCGGAATTCGCTCTCGGGCTCCATCAGGGACAGCCTaGGAAGCGGCACATAGTGTACCACAGTGTCTACCACGTTATCCG +
Preference number: 5 (lower is better)
Translates to: YRCLGIRSRAPSGTA*EAAHSVPQCLPRYP
Trigger: CGGATAACGTGGTAGACACTGTGGTACACTATGTGCCGCTTCCCAGGCTGTCCCTGATGGAGCCCGAGAGCGAATTCCGAGACATCGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGAAGGGGCTGACTCCTaGTCTGGTGGCAGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESEGADS*SGGRRN
Trigger: GTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGAAGGGGCTGACTCCTaGTCTGGTGGCAGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: LMVKPPKDALDMMCASRAEGADS*SGGRRN
Trigger: GTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTC...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACAGAAGGGGCTGACTCCTaGTCTGGTGGCAGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: RWPLLVPSIWGINFKVTTEGADS*SGGRRN
Trigger: GTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTC...TGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTAGGACCCCTGGAAGGGGCTGACTCCTaGTCTGGTGGCAGGAGGAAC +
Preference number: 5 (lower is better)
Translates to: LFFFHGLDNKLTSLLGPLEGADS*SGGRRN
Trigger: GTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTC...CAGGGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAAGGCTTGGTTTGGCCTaGGGAGCCTTCTGGGTCCTC +
Preference number: 5 (lower is better)
Translates to: LMVKPPKDALDMMCASRARLGLA*GAFWVL
Trigger: GAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCCT...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGGCTTGGTTTGGCCTaGGGAGCCTTCTGGGTCCTC +
Preference number: 5 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLERLGLA*GAFWVL
Trigger: GAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCCT...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCACCCTCCTCACAAGGCTaGGTTTGGCCTTGGGAGCCT +
Preference number: 5 (lower is better)
Translates to: LMVKPPKDALDMMCASRAPSSQG*VWPWEP
Trigger: AGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGGG...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACCACACCCTCCTCACAAGGCTaGGTTTGGCCTTGGGAGCCT +
Preference number: 5 (lower is better)
Translates to: RWPLLVPSIWGINFKVTTPSSQG*VWPWEP
Trigger: AGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGGG...TGTGGTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GATTGGGCTGGGGAGGTATTTTGGGCTGGGAAGGATCAGTGTATAAGAAGGTTCAGGAGGCCTCTCGGGTaGGGCAGGGCTGTAACCTCT +
Preference number: 5 (lower is better)
Translates to: DWAGEVFWAGKDQCIRRFRRPLG*GRAVTS
Trigger: AGAGGTTACAGCCCTGCCCAACCCGAGAGGCCTCCT...GAACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR CAA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCAGACATGGCCCTCCCTTaGGTAGAGGAGACAGCCTGG +
Preference number: 5 (lower is better)
Translates to: LMVKPPKDALDMMCASRADMALP*VEETAW
Trigger: CCAGGCTGTCTCCTCTACCAAAGGGAGGGCCATGTC...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGACATGGCCCTCCCTTaGGTAGAGGAGACAGCCTGG +
Preference number: 5 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESDMALP*VEETAW
Trigger: CCAGGCTGTCTCCTCTACCAAAGGGAGGGCCATGTC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 90 bp AAGGCGGGTAGAGATGGTGCCCTTCAGTTCAGAGGCGATCTTTTCTaGAGGGTATTGAAGAGCCGGGATCTTTTCCTCCAGGTGGTCCAG +
Preference number: 5 (lower is better)
Translates to: KAGRDGALQFRGDLF*RVLKSRDLFLQVVQ
Trigger: CTGGACCACCTGGAGGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAAGATCGCCTCTGAACTGAAGGGCACCATCTCTACCCGCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCCTGCAGGCCAACTCATaGGCAGCTGTGAACTGGGTG +
Preference number: 5 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESLQANS*AAVNWV
Trigger: CACCCAGTTCACAGCTGCCAATGAGTTGGCCTGCAG...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAACTGCAGGCCAACTCATaGGCAGCTGTGAACTGGGTG +
Preference number: 5 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQLQANS*AAVNWV
Trigger: CACCCAGTTCACAGCTGCCAATGAGTTGGCCTGCAG...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCGTGGCCCCCAGAACCTaGTCAGAGGTGCTTGCAATG +
Preference number: 5 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESVAPRT*SEVLAM
Trigger: CATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCAC...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGGTGGCCCCCAGAACCTaGTCAGAGGTGCTTGCAATG +
Preference number: 5 (lower is better)
Translates to: GSDGQAPKGCFRHDVCLEVAPRT*SEVLAM
Trigger: CATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCAC...CTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GCATCATGTCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTCCCTCCTCACAAGGCTaGGTTTGGCCTTGGGAGCCT +
Preference number: 5 (lower is better)
Translates to: ASCPFSSSMAWTTSLPASPSSQG*VWPWEP
Trigger: AGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGGG...AGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGACATGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp TCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCTGTCGAGAAAGAGTGTaGGCCAGGGTGCTGACCCTC +
Preference number: 5 (lower is better)
Translates to: SDGQAPKGCFRHDVCLESCRERV*ARVLTL
Trigger: GAGGGTCAGCACCCTGGCCAACACTCTTTCTCGACA...GCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AAGGTGGTGGGGCAGGGCCACACCTCAGTTTGCATCATGTCCCTTTTCTTCTTCGGCCCATGCTGTGGTTaGCATGGTGTGTCGAGAAAG +
Preference number: 5 (lower is better)
Translates to: KVVGQGHTSVCIMSLFFFGPCCG*HGVSRK
Trigger: CTTTCTCGACACACCATGCAAACCACAGCATGGGCC...GAAGAAGAAAAGGGACATGATGCAAACTGAGGTGTGGCCCTGCCCCACCACCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp GGATTGGGCTGGGGAGGTATTTTGGGCTGGGAAGGATCAGTGTATAAGAAGGTTGACATGGCCCTCCCTTaGGTAGAGGAGACAGCCTGG +
Preference number: 5 (lower is better)
Translates to: GLGWGGILGWEGSVYKKVDMALP*VEETAW
Trigger: CCAGGCTGTCTCCTCTACCAAAGGGAGGGCCATGTC...AACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR CAA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAACTCCATCCAGCAGGGTaGGGCCCTTGTTCATTGACA +
Preference number: 5 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQLHPAG*GPCSLT
Trigger: TGTCAATGAACAAGGGCCCAACCCTGCTGGATGGAG...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AGTTGTCCCCACCACACCCGGACCTCTCCCAACATTCTTTGGCTGTCATTGTTACTCCATCCAGCAGGGTaGGGCCCTTGTTCATTGACA +
Preference number: 5 (lower is better)
Translates to: SCPHHTRTSPNILWLSLLLHPAG*GPCSLT
Trigger: TGTCAATGAACAAGGGCCCAACCCTGCTGGATGGAG...TAACAATGACAGCCAAAGAATGTTGGGAGAGGTCCGGGTGTGGTGGGGACAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS-3UTR CAA 90 bp AGCCTCTTAGGACCCCTGGCTTTATGTCTAAAGTCTCAGTCCAGCTTGAAGGATAGGCTTGGTTTGGCCTaGGGAGCCTTCTGGGTCCTC +
Preference number: 5 (lower is better)
Translates to: SLLGPLALCLKSQSSLKDRLGLA*GAFWVL
Trigger: GAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCCT...ATCCTTCAAGCTGGACTGAGACTTTAGACATAAAGCCAGGGGTCCTAAGAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACTGTCGAGAAAGAGTGTaGGCCAGGGTGCTGACCCTC +
Preference number: 5 (lower is better)
Translates to: RRGRRSHERICPRERRVDCRERV*ARVLTL
Trigger: GAGGGTCAGCACCCTGGCCAACACTCTTTCTCGACA...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CAAAAGATGGCCACTGCTGGTTCCCAGCATCTGGGGAATCAATTTCAAGGTGACTGTCGAGAAAGAGTGTaGGCCAGGGTGCTGACCCTC +
Preference number: 5 (lower is better)
Translates to: QKMATAGSQHLGNQFQGDCRERV*ARVLTL
Trigger: GAGGGTCAGCACCCTGGCCAACACTCTTTCTCGACA...GTCACCTTGAAATTGATTCCCCAGATGCTGGGAACCAGCAGTGGCCATCTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CCTGGACAACAAGCTTACCAGCCTCTTAGGACCCCTGGCTTTATGTCTAAAGTCTGTCGAGAAAGAGTGTaGGCCAGGGTGCTGACCCTC +
Preference number: 5 (lower is better)
Translates to: PGQQAYQPLRTPGFMSKVCRERV*ARVLTL
Trigger: GAGGGTCAGCACCCTGGCCAACACTCTTTCTCGACA...GACTTTAGACATAAAGCCAGGGGTCCTAAGAGGCTGGTAAGCTTGTTGTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp AAGGAGAGTCGACCGCGGCTCTGGTGCCCCTTAAAAATTGGTTCTGATGGTCAAGGCCCATGCTGTGGTTaGCATGGTGTGTCGAGAAAG +
Preference number: 5 (lower is better)
Translates to: KESRPRLWCPLKIGSDGQGPCCG*HGVSRK
Trigger: CTTTCTCGACACACCATGCAAACCACAGCATGGGCC...TTGACCATCAGAACCAATTTTTAAGGGGCACCAGAGCCGCGGTCGACTCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CTGGGGAATCAATTTCAAGGTGACCACACAGGCAGGAGTGATGACATGGAAAAGCTGCAGGCCAACTCATaGGCAGCTGTGAACTGGGTG +
Preference number: 5 (lower is better)
Translates to: LGNQFQGDHTGRSDDMEKLQANS*AAVNWV
Trigger: CACCCAGTTCACAGCTGCCAATGAGTTGGCCTGCAG...CTTTTCCATGTCATCACTCCTGCCTGTGTGGTCACCTTGAAATTGATTCCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp CTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGTGCCTCGAGAGCATATTCTGCTGTCTCTTaGGCCATCCCCAAGGCAAGC +
Preference number: 5 (lower is better)
Translates to: LMVKPPKDALDMMCASRAYSAVS*AIPKAS
Trigger: GCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATA...TGCTCTCGAGGCACACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp ATCCTAACTGTATCAAGAAGAATAGAGCAGCAGCTTTACCTGGGTATCCTGGGGCTGCAGGCCAACTCATaGGCAGCTGTGAACTGGGTG +
Preference number: 5 (lower is better)
Translates to: ILTVSRRIEQQLYLGILGLQANS*AAVNWV
Trigger: CACCCAGTTCACAGCTGCCAATGAGTTGGCCTGCAG...CCCCAGGATACCCAGGTAAAGCTGCTGCTCTATTCTTCTTGATACAGTTAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp TCAGTTTGCATCATGTCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCGTGGCCCCCAGAACCTaGTCAGAGGTGCTTGCAATG +
Preference number: 5 (lower is better)
Translates to: SVCIMSLFFFHGLDNKLTVAPRT*SEVLAM
Trigger: CATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCAC...GGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGACATGATGCAAACTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp AGAAGAGGAAGAAGAAGCCATGAGAGAATCTGCCCACGAGAAAGGAGAGTCGACTATTCTGCTGTCTCTTaGGCCATCCCCAAGGCAAGC +
Preference number: 5 (lower is better)
Translates to: RRGRRSHERICPRERRVDYSAVS*AIPKAS
Trigger: GCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATA...GTCGACTCTCCTTTCTCGTGGGCAGATTCTCTCATGGCTTCTTCTTCCTCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GCATCATGTCCCTTTTCTTCTTCCATGGCCTGGACAACAAGCTTACCAGCCTCTTATTCTGCTGTCTCTTaGGCCATCCCCAAGGCAAGC +
Preference number: 5 (lower is better)
Translates to: ASCPFSSSMAWTTSLPASYSAVS*AIPKAS
Trigger: GCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATA...AGAGGCTGGTAAGCTTGTTGTCCAGGCCATGGAAGAAGAAAAGGGACATGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS-3UTR CAA 90 bp TGCAGGGGAGAGAGACTCAGAAACTGGAGCTGCCGTCTAAATAAACACACAAAGGGCCCATGCTGTGGTTaGCATGGTGTGTCGAGAAAG +
Preference number: 5 (lower is better)
Translates to: CRGERLRNWSCRLNKHTKGPCCG*HGVSRK
Trigger: CTTTCTCGACACACCATGCAAACCACAGCATGGGCC...CTTTGTGTGTTTATTTAGACGGCAGCTCCAGTTTCTGAGTCTCTCTCCCCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp GGATTGGGCTGGGGAGGTATTTTGGGCTGGGAAGGATCAGTGTATAAGAAGGTTTCAGTCAAATCTACCTaGGGAGTCAGAAGGTGGCCC +
Preference number: 5 (lower is better)
Translates to: GLGWGGILGWEGSVYKKVSVKST*GVRRWP
Trigger: GGGCCACCTTCTGACTCCCAAGGTAGATTTGACTGA...AACCTTCTTATACACTGATCCTTCCCAGCCCAAAATACCTCCCCAGCCCAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205553.2
CDS-3UTR CAA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGTGGCCCCCAGAACCTaGTCAGAGGTGCTTGCAATG +
Preference number: 5 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVVAPRT*SEVLAM
Trigger: CATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCAC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGCTCCATCCAGCAGGGTaGGGCCCTTGTTCATTGACA +
Preference number: 5 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVLHPAG*GPCSLT
Trigger: TGTCAATGAACAAGGGCCCAACCCTGCTGGATGGAG...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp TTAAAAATTGGTTCTGATGGTCAAGCCCCCAAAGGATGCTTTAGACATGATGTGGGCCCATGCTGTGGTTaGCATGGTGTGTCGAGAAAG +
Preference number: 5 (lower is better)
Translates to: LKIGSDGQAPKGCFRHDVGPCCG*HGVSRK
Trigger: CTTTCTCGACACACCATGCAAACCACAGCATGGGCC...CACATCATGTCTAAAGCATCCTTTGGGGGCTTGACCATCAGAACCAATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS-3UTR CAA 90 bp AAGGGAATTTTAGAACTAGTCAGGTGTCACTTGGCAACAAGTTTTGTTAAAGAACTCCATCCAGCAGGGTaGGGCCCTTGTTCATTGACA +
Preference number: 5 (lower is better)
Translates to: KGILELVRCHLATSFVKELHPAG*GPCSLT
Trigger: TGTCAATGAACAAGGGCCCAACCCTGCTGGATGGAG...TTCTTTAACAAAACTTGTTGCCAAGTGACACCTGACTAGTTCTAAAATTCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000205915.2
CDS GCA 72 bp GGCACCCGCACCTCACTCTGCCGCCGGGACACCACCTaGATGGCTGCCGATGCGCCCCACTGGGCCAGGCTG +
Preference number: 6 (lower is better)
Translates to: GTRTSLCRRDTT*MAADAPHWARL
Trigger: CAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGTGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 72 bp CACCTCACTCTGCCGCCGGGACACCACCTGCATGGCTaGCGATGCGCCCCACTGGGCCAGGCTGCTCAGGGG +
Preference number: 6 (lower is better)
Translates to: HLTLPPGHHLHG*RCAPLGQAAQG
Trigger: CCCCTGAGCAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 72 bp CCCGCACCTCACTCTGCCGCCGGGACACCACCTGCATaGCTGCCGATGCGCCCCACTGGGCCAGGCTGCTCA +
Preference number: 6 (lower is better)
Translates to: PAPHSAAGTPPA*LPMRPTGPGCS
Trigger: TGAGCAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 72 bp TGGACTCCGGGCTGGCGGGCCGCGCCCCGGACCCTTTaGGCTCCGCCTCTGCTGAAGGGTTATCGATGTCTC +
Preference number: 6 (lower is better)
Translates to: WTPGWRAAPRTL*APPLLKGYRCL
Trigger: GAGACATCGATAACCCTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGCGGCCCGCCAGCCCGGAGTCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CAA 72 bp ATAGCCAGGAAGCCGGGACGCGCTGACGCCTCGGTTTaGTCGTCCAGGCCGGGGCAGGAGGGCGCGCTGAGA +
Preference number: 6 (lower is better)
Translates to: IARKPGRADASV*SSRPGQEGALR
Trigger: TCTCAGCGCGCCCTCCTGCCCCGGCCTGGACGACAAAACCGAGGCGTCAGCGCGTCCCGGCTTCCTGGCTAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 72 bp GGCCAGGGGGAACTCGGAGCAGACACTCACCAGGGGTaGCACACCCGGGATCCACATGGCCAGAGAGTGGCC +
Preference number: 6 (lower is better)
Translates to: GQGELGADTHQG*HTRDPHGQRVA
Trigger: GGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGGTGAGTGTCTGCTCCGAGTTCCCCCTGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS CCA 72 bp CCAGGCTGCTCAGGGGTGCCACACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCTTCAGGGCCCATGCTG +
Preference number: 6 (lower is better)
Translates to: PGCSGVPHPGST*PESGPASGPML
Trigger: CAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGAGCAGCCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CAA 90 bp GCCAGTCGGCCAACCCGGGTGTTGGCGGCATATTCTGCTGTCTCTTaGGCCATCCCCAAGGCAAGCTCGCAGCCGGCCAGAGTGGCCCCC +
Preference number: 6 (lower is better)
Translates to: ASRPTRVLAAYSAVS*AIPKASSQPARVAP
Trigger: GGGGGCCACTCTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS TCA 72 bp GGGCCGCGCCCCGGACCCTTTGCGCTCCGCCTCTGCTaGAGGGTTATCGATGTCTCGGAATTCGCTCTCGGG +
Preference number: 6 (lower is better)
Translates to: GPRPGPFALRLC*RVIDVSEFALG
Trigger: CCCGAGAGCGAATTCCGAGACATCGATAACCCTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGCGGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 72 bp CACACTGGGTGGACAGCCGACGGACCACCGGCTCCATaGTCCAGGCAGCCAGGTTGCTGGCACCCTGTACAC +
Preference number: 6 (lower is better)
Translates to: HTGWTADGPPAP*SRQPGCWHPVH
Trigger: GTGTACAGGGTGCCAGCAACCTGGCTGCCTGGAGCATGGAGCCGGTGGTCCGTCGGCTGTCCACCCAGTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205413.2
CDS GCA 72 bp CAGGATCCTTCCCACCGTGCCCAGCACAGCCGCAGGTaGCCAGGTCACTGCGGAGATGGTGTTCCGGAGAGT +
Preference number: 6 (lower is better)
Translates to: QDPSHRAQHSRR*PGHCGDGVPES
Trigger: ACTCTCCGGAACACCATCTCCGCAGTGACCTGGGCACCTGCGGCTGTGCTGGGCACGGTGGGAAGGATCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205553.2
ENSMUST00000205915.2
CDS CCA 72 bp AGACACTCACCAGGGGTGCCACACCCGGGATCCACATaGCCAGAGAGTGGCCCTGCTTCAGGGCCCATGCTG +
Preference number: 6 (lower is better)
Translates to: RHSPGVPHPGST*PESGPASGPML
Trigger: CAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGGTGAGTGTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000206083.2
CDS TCA 72 bp CCCTCTGTGTCTGTCTGGTCGTCATGGCTCTCATCCTaGGAGGCTGCCAGGTTGTGCAGCCAGGGCACCCGC +
Preference number: 6 (lower is better)
Translates to: PSVSVWSSWLSS*EAARLCSQGTR
Trigger: GCGGGTGCCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGACGACCAGACAGACACAGAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS GCA 72 bp CCTTTGGTAGAGGAGACAGCCTGGGCTGGTGTGAGGTaGAGGATCCTTCCCACCGTGCCCAGCACAGCCGCA +
Preference number: 6 (lower is better)
Translates to: PLVEETAWAGVR*RILPTVPSTAA
Trigger: TGCGGCTGTGCTGGGCACGGTGGGAAGGATCCTGCACCTCACACCAGCCCAGGCTGTCTCCTCTACCAAAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205553.2
ENSMUST00000205915.2
CDS CCA 72 bp TGGCCATCCCCAAGGCAAGCTCGCAGCCGGCCAGAGTaGCCCCCAGAACCTTGTCAGAGGTGCTTGCAATGG +
Preference number: 6 (lower is better)
Translates to: WPSPRQARSRPE*PPEPCQRCLQW
Trigger: CCATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 72 bp CAGCCCCTCCAGAGGCCAGTCGGCCAACCCGGGTGTTaGCGGCATATTCTGCTGTCTCTTTGGCCATCCCCA +
Preference number: 6 (lower is better)
Translates to: QPLQRPVGQPGC*RHILLSLWPSP
Trigger: TGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGCCTCTGGAGGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 72 bp AGGGGTGCCACACCCGGGATCCACATGGCCAGAGAGTaGCCCTGCTTCAGGGCCCATGCTGTGGTTTGCATG +
Preference number: 6 (lower is better)
Translates to: RGATPGIHMARE*PCFRAHAVVCM
Trigger: CATGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CAA 72 bp TCAGCCCCTCCAGAGGCCAGTCGGCCAACCCGGGTGTaGGCGGCATATTCTGCTGTCTCTTTGGCCATCCCC +
Preference number: 6 (lower is better)
Translates to: SAPPEASRPTRV*AAYSAVSLAIP
Trigger: GGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGCCTCTGGAGGGGCTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CAA 90 bp ATCCCCAAGGCAAGCTCGCAGCCGGCCAGAGTGGCCCCCAGAACCTaGTCAGAGGTGCTTGCAATGGGCACACTGATGCTGTTCCTGGCG +
Preference number: 6 (lower is better)
Translates to: IPKASSQPARVAPRT*SEVLAMGTLMLFLA
Trigger: CGCCAGGAACAGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCGAGCTTGCCTTGGGGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CAA 90 bp AGAGCCAGATCAGCCCCTCCAGAGGCCAGTCGGCCAACCCGGGTGTaGGCGGCATATTCTGCTGTCTCTTTGGCCATCCCCAAGGCAAGC +
Preference number: 6 (lower is better)
Translates to: RARSAPPEASRPTRV*AAYSAVSLAIPKAS
Trigger: GCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGCCTCTGGAGGGGCTGATCTGGCTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 72 bp GGCCAGTCGGCCAACCCGGGTGTTGGCGGCATATTCTaGTGTCTCTTTGGCCATCCCCAAGGCAAGCTCGCA +
Preference number: 6 (lower is better)
Translates to: GQSANPGVGGIF*CLFGHPQGKLA
Trigger: TGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGGCCGACTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 72 bp GTCTGTCTGGTCGTCATGGCTCTCATCCTGAGAGGCTaGCAGGTTGTGCAGCCAGGGCACCCGCACCTCACT +
Preference number: 6 (lower is better)
Translates to: VCLVVMALILRG*QVVQPGHPHLT
Trigger: AGTGAGGTGCGGGTGCCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGACGACCAGACAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CCA 72 bp CAACCCGGGTGTTGGCGGCATATTCTGCTGTCTCTTTaGCCATCCCCAAGGCAAGCTCGCAGCCGGCCAGAG +
Preference number: 6 (lower is better)
Translates to: QPGCWRHILLSL*PSPRQARSRPE
Trigger: CTCTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 72 bp CCAGCACAGCCGCAGGTGCCCAGGTCACTGCGGAGATaGTGTTCCGGAGAGTGTTCTGCACGGTGTGTACCA +
Preference number: 6 (lower is better)
Translates to: PAQPQVPRSLRR*CSGECSARCVP
Trigger: TGGTACACACCGTGCAGAACACTCTCCGGAACACCATCTCCGCAGTGACCTGGGCACCTGCGGCTGTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205553.2
ENSMUST00000205915.2
CDS CAA 72 bp GCAAGCTCGCAGCCGGCCAGAGTGGCCCCCAGAACCTaGTCAGAGGTGCTTGCAATGGGCACACTGATGCTG +
Preference number: 6 (lower is better)
Translates to: ASSQPARVAPRT*SEVLAMGTLML
Trigger: CAGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCACTCTGGCCGGCTGCGAGCTTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CAA 72 bp CCAACCCGGGTGTTGGCGGCATATTCTGCTGTCTCTTaGGCCATCCCCAAGGCAAGCTCGCAGCCGGCCAGA +
Preference number: 6 (lower is better)
Translates to: PTRVLAAYSAVS*AIPKASSQPAR
Trigger: TCTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATGCCGCCAACACCCGGGTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CAA 90 bp GGAGCCTTCTGGGTCCTCTGCCGTCCGGAAGAAGGGGCTGACTCCTaGTCTGGTGGCAGGAGGAACTCTACCACCTTCTCGATGCTTCCC +
Preference number: 6 (lower is better)
Translates to: GAFWVLCRPEEGADS*SGGRRNSTTFSMLP
Trigger: GGGAAGCATCGAGAAGGTGGTAGAGTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTCTTCCGGACGGCAGAGGACCCAGAAGGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS TCA 72 bp AGCCTTCTGGGTCCTCTGCCGTCCGGAAGAAGGGGCTaGCTCCTTGTCTGGTGGCAGGAGGAACTCTACCAC +
Preference number: 6 (lower is better)
Translates to: SLLGPLPSGRRG*LLVWWQEELYH
Trigger: GTGGTAGAGTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTCTTCCGGACGGCAGAGGACCCAGAAGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 72 bp GGCCAGAGTGGCCCCCAGAACCTTGTCAGAGGTGCTTaGAATGGGCACACTGATGCTGTTCCTGGCGCTTCG +
Preference number: 6 (lower is better)
Translates to: GQSGPQNLVRGA*NGHTDAVPGAS
Trigger: CGAAGCGCCAGGAACAGCATCAGTGTGCCCATTGCAAGCACCTCTGACAAGGTTCTGGGGGCCACTCTGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 72 bp CAGGTCACTGCGGAGATGGTGTTCCGGAGAGTGTTCTaGACGGTGTGTACCACACCACCCAGGAGGCCTCTC +
Preference number: 6 (lower is better)
Translates to: QVTAEMVFRRVF*TVCTTPPRRPL
Trigger: GAGAGGCCTCCTGGGTGGTGTGGTACACACCGTGCAGAACACTCTCCGGAACACCATCTCCGCAGTGACCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205553.2
ENSMUST00000205915.2
CDS CAA 72 bp AGGGTGCTGACCCTCCTCACAAGGCTTGGTTTGGCCTaGGGAGCCTTCTGGGTCCTCTGCCGTCCGGAAGAA +
Preference number: 6 (lower is better)
Translates to: RVLTLLTRLGLA*GAFWVLCRPEE
Trigger: TTCTTCCGGACGGCAGAGGACCCAGAAGGCTCCCAAGGCCAAACCAAGCCTTGTGAGGAGGGTCAGCACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CAA 90 bp CCACATGGCCAGAGAGTGGCCCTGCTTCAGGGCCCATGCTGTGGTTaGCATGGTGTGTCGAGAAAGAGTGTTGGCCAGGGTGCTGACCCT +
Preference number: 6 (lower is better)
Translates to: PHGQRVALLQGPCCG*HGVSRKSVGQGADP
Trigger: AGGGTCAGCACCCTGGCCAACACTCTTTCTCGACACACCATGCAAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS GCA 72 bp TGTCTGGTGGCAGGAGGAACTCTACCACCTTCTCGATaGTTCCCAGAGCCAGATCAGCCCCTCCAGAGGCCA +
Preference number: 6 (lower is better)
Translates to: CLVAGGTLPPSR*FPEPDQPLQRP
Trigger: TGGCCTCTGGAGGGGCTGATCTGGCTCTGGGAAGCATCGAGAAGGTGGTAGAGTTCCTCCTGCCACCAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS CCA 72 bp CTCGGAATTCGCTCTCGGGCTCCATCAGGGACAGCCTaGGAAGCGGCACATAGTGTACCACAGTGTCTACCA +
Preference number: 6 (lower is better)
Translates to: LGIRSRAPSGTA*EAAHSVPQCLP
Trigger: TGGTAGACACTGTGGTACACTATGTGCCGCTTCCCAGGCTGTCCCTGATGGAGCCCGAGAGCGAATTCCGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205915.2
CDS CAA 90 bp AGAGATGGTGCCCTTCAGTTCAGAGGCGATCTTTTCTGGAGGGTATaGAAGAGCCGGGATCTTTTCCTCCAGGTGGTCCAGGCCTCTGCA +
Preference number: 6 (lower is better)
Translates to: RDGALQFRGDLFWRV*KSRDLFLQVVQASA
Trigger: TGCAGAGGCCTGGACCACCTGGAGGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAAGATCGCCTCTGAACTGAAGGGCACCATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2
CDS TCA 72 bp CCCTTCAGTTCAGAGGCGATCTTTTCTGGAGGGTATTaGAGAGCCGGGATCTTTTCCTCCAGGTGGTCCAGG +
Preference number: 6 (lower is better)
Translates to: PFSSEAIFSGGY*RAGIFSSRWSR
Trigger: CCTGGACCACCTGGAGGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAAGATCGCCTCTGAACTGAAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000032762.14
ENSMUST00000178257.3
ENSMUST00000205747.2
ENSMUST00000205915.2
ENSMUST00000206083.2