Pregenerated sensors for PLGRKT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016495Ensembl transcript IDs: ENSMUST00000016639.12, ENSMUST00000126800.8, ENSMUST00000143467.8, ENSMUST00000152936.8, ENSMUST00000155367.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTaGTCTGAGGATAACTGTGACTTCATTTGTCTGAGAAGAGTTTAC | + |
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Preference number: 1 (lower is better) Translates to: TMIQANNFVLLRHDM*SEDNCDFICLRRVY Trigger: GTAAACTCTTCTCAGACAAATGAAGTCACAGTTATCCTCAGAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152936.8 |
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| CDS-3UTR TCA 90 bp | TGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGGTCCTCAGCTTCACCTaGAGCCGAGCATGCGTAACC | + |
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Preference number: 4 (lower is better) Translates to: CKHHDSSQQLCAFETRYVVLSFT*SRACVT Trigger: GGTTACGCATGCTCGGCTTCAGGTGAAGCTGAGGAC...CACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152936.8 |
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| CDS-3UTR TCA 90 bp | ACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGCTCTGAGACGTTCCAAAATATTTaGGGAATTCCCGAGACCAGG | + |
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Preference number: 4 (lower is better) Translates to: TMIQANNFVLLRHDMCSETFQNI*GIPETR Trigger: CCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGT...CTCAGAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR TCA 90 bp | AAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGCTCCAAGGCTTTCAAAGGTaGTCAGTCCTTTTGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KHHDSSQQLCAFETRYVLQGFQR*SVLLAA Trigger: AGCTGCCAAAAGGACTGATCACCTTTGAAAGCCTTG...GAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CCA 90 bp | AAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGCTCTCATCTCATTCTGCATaGTCAGATGCCTTTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KHHDSSQQLCAFETRYVLSSHSA*SDAFPA Trigger: AGCTGGAAAGGCATCTGACCATGCAGAATGAGATGA...GAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CCA 90 bp | AACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGGTGATCAGTCCTTTTaGCAGCTCCAGCTTCGTCTT | + |
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Preference number: 4 (lower is better) Translates to: NCKHHDSSQQLCAFETRYGDQSF*QLQLRL Trigger: AAGACGAAGCTGGAGCTGCCAAAAGGACTGATCACC...ATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| 3UTR CAA 72 bp | GTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTaGAGACACGATATGTGCTCTGAGGATAACTGTGAC | + |
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Preference number: 4 (lower is better) Translates to: VNTMIQANNFVL*RHDMCSEDNCD Trigger: GTCACAGTTATCCTCAGAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 ENSMUST00000152936.8 |
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| CDS-3UTR TCA 90 bp | TGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGACGTTCCAAAATATTTaGGGAATTCCCGAGACCAGG | + |
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Preference number: 4 (lower is better) Translates to: CKHHDSSQQLCAFETRYVTFQNI*GIPETR Trigger: CCTGGTCTCGGGAATTCCTCAAATATTTTGGAACGT...CACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR TCA 90 bp | AAAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGACAAGGCTTTCAAAGGTaGTCAGTCCTTTTGGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KNCKHHDSSQQLCAFETRQGFQR*SVLLAA Trigger: AGCTGCCAAAAGGACTGATCACCTTTGAAAGCCTTG...TCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CCA 90 bp | TGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGTACTCTGCTCCCTTCTaGCTTTCTCAAGGCTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: CKHHDSSQQLCAFETRYVYSAPF*LSQGFQ Trigger: TTGAAAGCCTTGAGAAAGCCAGAAGGGAGCAGAGTA...CACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR GCA 90 bp | AAAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATCTCTCATCTCATTCTaGATGGTCAGATGCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: KNCKHHDSSQQLCAFETRSLISF*MVRCLS Trigger: GGAAAGGCATCTGACCATGCAGAATGAGATGAGAGA...TCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR GCA 90 bp | AACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATTCTCTCATCTCATTCTaGATGGTCAGATGCCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: NCKHHDSSQQLCAFETRYSLISF*MVRCLS Trigger: GGAAAGGCATCTGACCATGCAGAATGAGATGAGAGA...ATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR GCA 90 bp | AAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGCTCATCTGCATAGCCATTTaGCTTTCTCTCATCTCATTC | + |
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Preference number: 4 (lower is better) Translates to: KHHDSSQQLCAFETRYVLICIAI*LSLISF Trigger: GAATGAGATGAGAGAAAGGCAAATGGCTATGCAGAT...GAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CCA 90 bp | AAAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATCATCTCATTCTGCATaGTCAGATGCCTTTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KNCKHHDSSQQLCAFETRSSHSA*SDAFPA Trigger: AGCTGGAAAGGCATCTGACCATGCAGAATGAGATGA...TCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CCA 90 bp | AAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATTACTCTGCTCCCTTCTaGCTTTCTCAAGGCTTTCAA | + |
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Preference number: 4 (lower is better) Translates to: KTVNTMIQANNFVLLRHDYSAPF*LSQGFQ Trigger: TTGAAAGCCTTGAGAAAGCCAGAAGGGAGCAGAGTA...ATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR GCA 90 bp | AAAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGAATCTGCATAGCCATTTaGCTTTCTCTCATCTCATTC | + |
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Preference number: 4 (lower is better) Translates to: KNCKHHDSSQQLCAFETRICIAI*LSLISF Trigger: GAATGAGATGAGAGAAAGGCAAATGGCTATGCAGAT...TCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS CCA 90 bp | CTCCCTTCTGGCTTTCTCAAGGCTTTCAAAGGTGATCAGTCCTTTTaGCAGCTCCAGCTTCGTCTTTTCTGTTTCCAATATGTCCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: LPSGFLKAFKGDQSF*QLQLRLFCFQYVLS Trigger: GCTGAGGACATATTGGAAACAGAAAAGACGAAGCTGGAGCTGCCAAAAGGACTGATCACCTTTGAAAGCCTTGAGAAAGCCAGAAGGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS GCA 90 bp | AAATATTTGAGGAATTCCCGAGACCAGGCGATCTGCATAGCCATTTaGCTTTCTCTCATCTCATTCTGCATGGTCAGATGCCTTTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: KYLRNSRDQAICIAI*LSLISFCMVRCLSS Trigger: GCTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 ENSMUST00000155367.8 |
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| CDS-3UTR CAA 90 bp | AAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGCTCAACGTTCCAAAATATTaGAGGAATTCCCGAGACCAG | + |
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Preference number: 5 (lower is better) Translates to: KHHDSSQQLCAFETRYVLNVPKY*RNSRDQ Trigger: CTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTT...GAGCACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CAA 90 bp | TGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATATGTGGCTTTAGTGCTCCAGTaGCTAAAGAGATGGTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: CKHHDSSQQLCAFETRYVALVLQ*LKRWLQ Trigger: TTGCAACCATCTCTTTAGCAACTGGAGCACTAAAGC...CACATATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CAA 90 bp | AAAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGAGCTTTAGTGCTCCAGTaGCTAAAGAGATGGTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: KNCKHHDSSQQLCAFETRALVLQ*LKRWLQ Trigger: TTGCAACCATCTCTTTAGCAACTGGAGCACTAAAGC...TCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS-3UTR CAA 90 bp | AAAACTGTAAACACCATGATTCAAGCCAACAACTTTGTGCTTTTGAGACACGATAACGTTCCAAAATATTaGAGGAATTCCCGAGACCAG | + |
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Preference number: 5 (lower is better) Translates to: KTVNTMIQANNFVLLRHDNVPKY*RNSRDQ Trigger: CTGGTCTCGGGAATTCCTCAAATATTTTGGAACGTT...ATCGTGTCTCAAAAGCACAAAGTTGTTGGCTTGAATCATGGTGTTTACAGTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS TCA 72 bp | CTCATCTCATTCTGCATGGTCAGATGCCTTTCCAGCTaGAGCCGAGCATGCGTAACCATGAACTCCTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: LISFCMVRCLSS*SRACVTMNSCW Trigger: CCAACAGGAGTTCATGGTTACGCATGCTCGGCTTCAGCTGGAAAGGCATCTGACCATGCAGAATGAGATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000016639.12 ENSMUST00000126800.8 ENSMUST00000143467.8 ENSMUST00000155367.8 |
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| CDS GCA 72 bp | AGGAATTCCCGAGACCAGGCGATCTGCATAGCCATTTaGCTTTCTCTCATCTCATTCTGCATGGTCAGATGC | + |
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Preference number: 6 (lower is better) Translates to: RNSRDQAICIAI*LSLISFCMVRC Trigger: GCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 ENSMUST00000155367.8 |
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| CDS TCA 72 bp | TCTGCTCCCTTCTGGCTTTCTCAAGGCTTTCAAAGGTaGTCAGTCCTTTTGGCAGCTCCAGCTTCGTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SAPFWLSQGFQR*SVLLAAPASSF Trigger: AAAAGACGAAGCTGGAGCTGCCAAAAGGACTGATCACCTTTGAAAGCCTTGAGAAAGCCAGAAGGGAGCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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| CDS CAA 90 bp | AAAATATTTGAGGAATTCCCGAGACCAGGCGATCTGCATAGCCATTaGCCTTTCTCTCATCTCATTCTGCATGGTCAGATGCCTTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: KIFEEFPRPGDLHSH*PFSHLILHGQMPFQ Trigger: CTGGAAAGGCATCTGACCATGCAGAATGAGATGAGAGAAAGGCAAATGGCTATGCAGATCGCCTGGTCTCGGGAATTCCTCAAATATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 ENSMUST00000155367.8 |
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| CDS CCA 72 bp | GGCTTTCTCAAGGCTTTCAAAGGTGATCAGTCCTTTTaGCAGCTCCAGCTTCGTCTTTTCTGTTTCCAATAT | + |
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Preference number: 6 (lower is better) Translates to: GFLKAFKGDQSF*QLQLRLFCFQY Trigger: ATATTGGAAACAGAAAAGACGAAGCTGGAGCTGCCAAAAGGACTGATCACCTTTGAAAGCCTTGAGAAAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016639.12 ENSMUST00000143467.8 |
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