Pregenerated sensors for PLET1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032068Ensembl transcript IDs: ENSMUST00000114474.8, ENSMUST00000188047.2
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATTCCCTCCCCACCCCCACACCCAGGAGGCTCATGGGAATACCTTTaGCAAGAAACACAAGTTCAGATTGGCTGTCAACAGGTTAAACTG | + |
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Preference number: 1 (lower is better) Translates to: IPSPPPHPGGSWEYL*QETQVQIGCQQVKL Trigger: CAGTTTAACCTGTTGACAGCCAATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGGTGGGGAGGGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR TCA 90 bp | TTTGGCAAGAAACACAAGTTCAGATTGGCTGTCAACAGGTTAAACTaGGAGTCAGAACTTCAGGTTACACGCAGGATGGATGGACTAAGT | + |
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Preference number: 1 (lower is better) Translates to: FGKKHKFRLAVNRLN*ESELQVTRRMDGLS Trigger: ACTTAGTCCATCCATCCTGCGTGTAACCTGAAGTTCTGACTCTCAGTTTAACCTGTTGACAGCCAATCTGAACTTGTGTTTCTTGCCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CCA 90 bp | TTTTCATATACTTCCTTCAAAACCTACCGACTGGTCTGGGCACAGTaGAAATCTGCTAGTAGCCACAGGATGATCACTCATTTCTCTTTT | + |
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Preference number: 1 (lower is better) Translates to: FSYTSFKTYRLVWAQ*KSASSHRMITHFSF Trigger: AAAAGAGAAATGAGTGATCATCCTGTGGCTACTAGCAGATTTCCACTGTGCCCAGACCAGTCGGTAGGTTTTGAAGGAAGTATATGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR TCA 90 bp | TTTAGTTTTAATGTAAGTCTAAGAAAAGCAGACAAATGGGTAAGATaGGGAATTGAAGGCTCACAACCACCCGTAATGAGGTCTGACACC | + |
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Preference number: 1 (lower is better) Translates to: FSFNVSLRKADKWVR*GIEGSQPPVMRSDT Trigger: GGTGTCAGACCTCATTACGGGTGGTTGTGAGCCTTCAATTCCTCATCTTACCCATTTGTCTGCTTTTCTTAGACTTACATTAAAACTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000188047.2 |
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| 3UTR-3UTR TCA 90 bp | CCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGATTATGAGCTCGGGAGGATaGCCTGGAGGTTGGAGATCT | + |
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Preference number: 2 (lower is better) Translates to: PHPGGSWEYLWQETQVQIMSSGG*PGGWRS Trigger: AGATCTCCAACCTCCAGGTCATCCTCCCGAGCTCAT...AATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 90 bp | GTCCTTTGCAACCTGAGTAGGTTTGGCCAGAAATCTGAAATCAGTTaGAAAGTAAAGAAGGATCATTCCCTCCCCACCCCCACACCCAGG | + |
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Preference number: 2 (lower is better) Translates to: VLCNLSRFGQKSEIS*KVKKDHSLPTPTPR Trigger: CCTGGGTGTGGGGGTGGGGAGGGAATGATCCTTCTTTACTTTCAAACTGATTTCAGATTTCTGGCCAAACCTACTCAGGTTGCAAAGGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 90 bp | TTTACAAGAAGCGGAATTTGTGCCCTGAAAGATCCAGGCAAGCATTaGTATCCCTCAAGTGCACTAGTGTTGCAGGTCTGTGGTCCAAGG | + |
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Preference number: 2 (lower is better) Translates to: FTRSGICALKDPGKH*YPSSALVLQVCGPR Trigger: CCTTGGACCACAGACCTGCAACACTAGTGCACTTGAGGGATACAAATGCTTGCCTGGATCTTTCAGGGCACAAATTCCGCTTCTTGTAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 90 bp | GTTACACGCAGGATGGATGGACTAAGTATTTACAAGAAGCGGAATTaGTGCCCTGAAAGATCCAGGCAAGCATTTGTATCCCTCAAGTGC | + |
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Preference number: 2 (lower is better) Translates to: VTRRMDGLSIYKKRN*CPERSRQAFVSLKC Trigger: GCACTTGAGGGATACAAATGCTTGCCTGGATCTTTCAGGGCACAAATTCCGCTTCTTGTAAATACTTAGTCCATCCATCCTGCGTGTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR-3UTR GCA 90 bp | AAACTGAGAGTCAGAACTTCAGGTTACACGCAGGATGGATGGACTAAGTATTTAAAGAAGCGGAATTTGTaGCCTGAAAGATCCAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: KLRVRTSGYTQDGWTKYLKKRNL*PERSRQ Trigger: TTGCCTGGATCTTTCAGGGCACAAATTCCGCTTCTT...TAAATACTTAGTCCATCCATCCTGCGTGTAACCTGAAGTTCTGACTCTCAGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CCA 72 bp | CCACCCCCACACCCAGGAGGCTCATGGGAATACCTTTaGCAAGAAACACAAGTTCAGATTGGCTGTCAACAG | + |
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Preference number: 3 (lower is better) Translates to: PPPHPGGSWEYL*QETQVQIGCQQ Trigger: CTGTTGACAGCCAATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR TCA 72 bp | ATGTTTAAGCACTGGCCTGAAATGAGCTCGGGAGGATaGCCTGGAGGTTGGAGATCTGCTTCCCCAGTTTTC | + |
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Preference number: 3 (lower is better) Translates to: MFKHWPEMSSGG*PGGWRSASPVF Trigger: GAAAACTGGGGAAGCAGATCTCCAACCTCCAGGTCATCCTCCCGAGCTCATTTCAGGCCAGTGCTTAAACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR GCA 72 bp | CCTGAAAGATCCAGGCAAGCATTTGTATCCCTCAAGTaGACTAGTGTTGCAGGTCTGTGGTCCAAGGTGGTG | + |
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Preference number: 3 (lower is better) Translates to: PERSRQAFVSLK*TSVAGLWSKVV Trigger: CACCACCTTGGACCACAGACCTGCAACACTAGTGCACTTGAGGGATACAAATGCTTGCCTGGATCTTTCAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CCA 72 bp | ATCATTCCCTCCCCACCCCCACACCCAGGAGGCTCATaGGAATACCTTTGGCAAGAAACACAAGTTCAGATT | + |
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Preference number: 3 (lower is better) Translates to: IIPSPPPHPGGS*EYLWQETQVQI Trigger: AATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGGTGGGGAGGGAATGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CCA 72 bp | ACTTCCTTCAAAACCTACCGACTGGTCTGGGCACAGTaGAAATCTGCTAGTAGCCACAGGATGATCACTCAT | + |
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Preference number: 3 (lower is better) Translates to: TSFKTYRLVWAQ*KSASSHRMITH Trigger: ATGAGTGATCATCCTGTGGCTACTAGCAGATTTCCACTGTGCCCAGACCAGTCGGTAGGTTTTGAAGGAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR-3UTR CAA 90 bp | CCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGATTGATCCAGGCAAGCATTaGTATCCCTCAAGTGCACTA | + |
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Preference number: 3 (lower is better) Translates to: PHPGGSWEYLWQETQVQIDPGKH*YPSSAL Trigger: TAGTGCACTTGAGGGATACAAATGCTTGCCTGGATC...AATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR TCA 72 bp | AAACACAAGTTCAGATTGGCTGTCAACAGGTTAAACTaGGAGTCAGAACTTCAGGTTACACGCAGGATGGAT | + |
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Preference number: 3 (lower is better) Translates to: KHKFRLAVNRLN*ESELQVTRRMD Trigger: ATCCATCCTGCGTGTAACCTGAAGTTCTGACTCTCAGTTTAACCTGTTGACAGCCAATCTGAACTTGTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR TCA 72 bp | CCCATTTCCTGGTATAAATTATCATCAAGGAAGAAATaGCCAGCTTTGACTGGACAAAACAAAACTGAGATA | + |
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Preference number: 3 (lower is better) Translates to: PISWYKLSSRKK*PALTGQNKTEI Trigger: TATCTCAGTTTTGTTTTGTCCAGTCAAAGCTGGTCATTTCTTCCTTGATGATAATTTATACCAGGAAATGGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR GCA 90 bp | CCCCCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGAGGGAGGGGGATAAGTaGAGAGCCAGGCACAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: PPHPGGSWEYLWQETQVQREGDK*RARHRN Trigger: GTTCCTGTGCCTGGCTCTGCACTTATCCCCCTCCCT...CTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | CCACCCCCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCCAGGCTTTTGGCTGTaGTCTTGGCTGTGGTCACGG | + |
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Preference number: 4 (lower is better) Translates to: PPPHPGGSWEYLWQETQVPGFWL*SWLWSR Trigger: CCGTGACCACAGCCAAGACCACAGCCAAAAGCCTGG...AACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGGTGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | CCCCCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGTTTTGGCTGTGGTCTTaGCTGTGGTCACGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: PPHPGGSWEYLWQETQVQFWLWS*LWSRLW Trigger: CCACAGCCGTGACCACAGCCAAGACCACAGCCAAAA...CTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | CCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGATTACTCCAGGTGCCCACTaGGCTGTCGTCCTCCTTCAC | + |
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Preference number: 4 (lower is better) Translates to: PHPGGSWEYLWQETQVQITPGAH*AVVLLH Trigger: GTGAAGGAGGACGACAGCCCAGTGGGCACCTGGAGT...AATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 72 bp | CCCACCCCCACACCCAGGAGGCTCATGGGAATACCTTaGGCAAGAAACACAAGTTCAGATTGGCTGTCAACA | + |
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Preference number: 4 (lower is better) Translates to: PTPTPRRLMGIP*ARNTSSDWLST Trigger: TGTTGACAGCCAATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGGTGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | GCCCTGAAAGATCCAGGCAAGCATTTGTATCCCTCAAGTGCACTAGTGTTGCAGAAAACAAGCAGGATATaGAGGGCACCTGCCAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: ALKDPGKHLYPSSALVLQKTSRI*RAPARG Trigger: CCCCCTGGCAGGTGCCCTCCATATCCTGCTTGTTTT...CTGCAACACTAGTGCACTTGAGGGATACAAATGCTTGCCTGGATCTTTCAGGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR GCA 90 bp | CCCCCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGACGACGATGAGGACCTaGAGGTTGACTTTAGTCACA | + |
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Preference number: 4 (lower is better) Translates to: PPHPGGSWEYLWQETQVQTTMRT*RLTLVT Trigger: TGTGACTAAAGTCAACCTGCAGGTCCTCATCGTCGT...CTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | CCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGATTCTGTGGTATTGGCTGTaGTCACGGCTGTGGTGTTGG | + |
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Preference number: 4 (lower is better) Translates to: PHPGGSWEYLWQETQVQILWYWL*SRLWCW Trigger: CCAACACCACAGCCGTGACCACAGCCAATACCACAG...AATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | CACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTCAGATTGTATTGGCTGTGGTATTaGCTGTGGTCACGGCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: HTQEAHGNTFGKKHKFRLYWLWY*LWSRLW Trigger: CCACAGCCGTGACCACAGCCAATACCACAGCCAATA...CAATCTGAACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR GCA 90 bp | ACACACACACACACACACACACACACACACACACTTTTATTCCTAGTTCTAAAAGATATGGAGGGCACCTaGCAGGGGGCTGCCGAGAGT | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTHTLLFLVLKDMEGT*QGAAES Trigger: ACTCTCGGCAGCCCCCTGGCAGGTGCCCTCCATATC...TTTTAGAACTAGGAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 72 bp | AGCGGAATTTGTGCCCTGAAAGATCCAGGCAAGCATTaGTATCCCTCAAGTGCACTAGTGTTGCAGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SGICALKDPGKH*YPSSALVLQVC Trigger: ACAGACCTGCAACACTAGTGCACTTGAGGGATACAAATGCTTGCCTGGATCTTTCAGGGCACAAATTCCGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | TCTGCTAGTAGCCACAGGATGATCACTCATTTCTCTTTTTCCTACAGTCACATAGAACAGTCCCAGGTGTaGAAGCAAGGAGCGGAGCGA | + |
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Preference number: 4 (lower is better) Translates to: SASSHRMITHFSFSYSHIEQSQV*KQGAER Trigger: TCGCTCCGCTCCTTGCTTCCACACCTGGGACTGTTC...TATGTGACTGTAGGAAAAAGAGAAATGAGTGATCATCCTGTGGCTACTAGCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR GCA 90 bp | GTCCTGTCATTGGCTTCTGAGGCACAGTTTTCATATACTTCCTTCAAAACCTACGTCGTCCTCCTTCACTaGTTTCAGGATCACGGCACT | + |
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Preference number: 4 (lower is better) Translates to: VLSLASEAQFSYTSFKTYVVLLH*FQDHGT Trigger: AGTGCCGTGATCCTGAAAGCAGTGAAGGAGGACGAC...GTAGGTTTTGAAGGAAGTATATGAAAACTGTGCCTCAGAAGCCAATGACAGGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 72 bp | AACCTGAGTAGGTTTGGCCAGAAATCTGAAATCAGTTaGAAAGTAAAGAAGGATCATTCCCTCCCCACCCCC | + |
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Preference number: 4 (lower is better) Translates to: NLSRFGQKSEIS*KVKKDHSLPTP Trigger: GGGGGTGGGGAGGGAATGATCCTTCTTTACTTTCAAACTGATTTCAGATTTCTGGCCAAACCTACTCAGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACACACACACACACACACACTTTTATTCCTAGTTCTAAAAACCTGTGGTCACGGCTGTaGTATTGGCTGTGGTATTGG | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTHTFIPSSKNLWSRL*YWLWYW Trigger: CCAATACCACAGCCAATACCACAGCCGTGACCACAG...GTTTTTAGAACTAGGAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR GCA 90 bp | AGAACTTCAGGTTACACGCAGGATGGATGGACTAAGTATTTACAAGAAGCGGAAAGACACTGCTGTCGTTaGACTTCTCATATGTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RTSGYTQDGWTKYLQEAERHCCR*TSHMFH Trigger: GTGGAACATATGAGAAGTGCAACGACAGCAGTGTCT...TTCCGCTTCTTGTAAATACTTAGTCCATCCATCCTGCGTGTAACCTGAAGTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| 3UTR CAA 72 bp | AGGATGGATGGACTAAGTATTTACAAGAAGCGGAATTaGTGCCCTGAAAGATCCAGGCAAGCATTTGTATCC | + |
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Preference number: 4 (lower is better) Translates to: RMDGLSIYKKRN*CPERSRQAFVS Trigger: GGATACAAATGCTTGCCTGGATCTTTCAGGGCACAAATTCCGCTTCTTGTAAATACTTAGTCCATCCATCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CCA 90 bp | ACACACACACACACACACACACACACACACACACTTTTATTCCTAGTTCTAAAAGTCGTGTTTATGGTCTaGCTGGTCTCAGAACTCTCA | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTHTLLFLVLKVVFMV*LVSELS Trigger: TGAGAGTTCTGAGACCAGCCAGACCATAAACACGAC...TTTTAGAACTAGGAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 90 bp | CTGCCAGGGGGCTGCCGAGAGTGCGGATGGCCAGGCTTTTGGCTGTaGTCTTGGCTGTGGTCACGGCTGTGGTATTGGCTGTGGTATTGG | + |
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Preference number: 5 (lower is better) Translates to: LPGGCRECGWPGFWL*SWLWSRLWYWLWYW Trigger: CCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCAAAAGCCTGGCCATCCGCACTCTCGGCAGCCCCCTGGCAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS GCA 90 bp | ACCACGCAGGACCCATTATCACTGGCAGAGAGGGAGGGGGATAAGTaGAGAGCCAGGCACAGGAACAGTCCCAGGTGTGGAAGCAAGGAG | + |
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Preference number: 5 (lower is better) Translates to: TTQDPLSLAEREGDK*RARHRNSPRCGSKE Trigger: CTCCTTGCTTCCACACCTGGGACTGTTCCTGTGCCTGGCTCTGCACTTATCCCCCTCCCTCTCTGCCAGTGATAATGGGTCCTGCGTGGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CCA 90 bp | CCAGGCTTTTGGCTGTGGTCTTGGCTGTGGTCACGGCTGTGGTATTaGCTGTGGTATTGGCTGTGGTCACGGCTGTGGTGTTGGCTGTGT | + |
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Preference number: 5 (lower is better) Translates to: PGFWLWSWLWSRLWY*LWYWLWSRLWCWLC Trigger: ACACAGCCAACACCACAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCAAAAGCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS TCA 90 bp | TGGGCTGTCGTCCTCCTTCACTGCTTTCAGGATCACGGCACTGACTaGATCGTTCACGGGGACCGTCACTGTATAGGTTACATCCCCACC | + |
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Preference number: 5 (lower is better) Translates to: WAVVLLHCFQDHGTD*IVHGDRHCIGYIPT Trigger: GGTGGGGATGTAACCTATACAGTGACGGTCCCCGTGAACGATTCAGTCAGTGCCGTGATCCTGAAAGCAGTGAAGGAGGACGACAGCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CCA 90 bp | ACTGCTGTCGTTGCACTTCTCATATGTTCCACTCCAGGTGCCCACTaGGCTGTCGTCCTCCTTCACTGCTTTCAGGATCACGGCACTGAC | + |
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Preference number: 5 (lower is better) Translates to: TAVVALLICSTPGAH*AVVLLHCFQDHGTD Trigger: GTCAGTGCCGTGATCCTGAAAGCAGTGAAGGAGGACGACAGCCCAGTGGGCACCTGGAGTGGAACATATGAGAAGTGCAACGACAGCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS-3UTR CAA 90 bp | CCACCCCCACACCCAGGAGGCTCATGGGAATACCTTTGGCAAGAAACACAAGTTGTATTGGCTGTGGTATaGGCTGTGGTCACGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: PPPHPGGSWEYLWQETQVVLAVV*AVVTAV Trigger: CACAGCCGTGACCACAGCCAATACCACAGCCAATAC...AACTTGTGTTTCTTGCCAAAGGTATTCCCATGAGCCTCCTGGGTGTGGGGGTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS GCA 90 bp | CCGACTGGCTTTGGGATGTCAAGTTATAGTAGACACTGCTGTCGTTaGACTTCTCATATGTTCCACTCCAGGTGCCCACTGGGCTGTCGT | + |
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Preference number: 5 (lower is better) Translates to: PTGFGMSSYSRHCCR*TSHMFHSRCPLGCR Trigger: ACGACAGCCCAGTGGGCACCTGGAGTGGAACATATGAGAAGTGCAACGACAGCAGTGTCTACTATAACTTGACATCCCAAAGCCAGTCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS GCA 90 bp | TCTGGAAGACCGACTGGCTTTGGGATGTCAAGTTATAGTAGACACTaGTGTCGTTGCACTTCTCATATGTTCCACTCCAGGTGCCCACTG | + |
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Preference number: 5 (lower is better) Translates to: SGRPTGFGMSSYSRH*CRCTSHMFHSRCPL Trigger: CAGTGGGCACCTGGAGTGGAACATATGAGAAGTGCAACGACAGCAGTGTCTACTATAACTTGACATCCCAAAGCCAGTCGGTCTTCCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS-3UTR CAA 90 bp | TCTGAGGCACAGTTTTCATATACTTCCTTCAAAACCTACCGACTGGTCTGGGCATTTGAGGCTGTGCGATaGACGACGATGAGGACCTGC | + |
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Preference number: 5 (lower is better) Translates to: SEAQFSYTSFKTYRLVWAFEAVR*TTMRTC Trigger: GCAGGTCCTCATCGTCGTCAATCGCACAGCCTCAAA...TGCCCAGACCAGTCGGTAGGTTTTGAAGGAAGTATATGAAAACTGTGCCTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CAA 90 bp | AAACTGAGAGTCAGAACTTCAGGTTACACGCAGGATGGATGGACTAAGTATTTACTTTTGGCTGTGGTCTaGGCTGTGGTCACGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: KLRVRTSGYTQDGWTKYLLLAVV*AVVTAV Trigger: CACAGCCGTGACCACAGCCAAGACCACAGCCAAAAG...TAAATACTTAGTCCATCCATCCTGCGTGTAACCTGAAGTTCTGACTCTCAGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CAA 90 bp | TGCAACCTGAGTAGGTTTGGCCAGAAATCTGAAATCAGTTTGAAAGTAAAGAAGGTGTTGGCTGTGTCCTaGGCTGTAGTCTTGGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: CNLSRFGQKSEISLKVKKVLAVS*AVVLAV Trigger: CACAGCCAAGACTACAGCCAAGGACACAGCCAACAC...CTTCTTTACTTTCAAACTGATTTCAGATTTCTGGCCAAACCTACTCAGGTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS-3UTR CAA 90 bp | ACACACACACACACACACACACACACACACACTTTTATTCCTAGTTCTAAAAACTCCTTGGCTGTAGTCTaGGCTGTGTTCACAGTTGGA | + |
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Preference number: 5 (lower is better) Translates to: THTHTHTHTHTFIPSSKNSLAVV*AVFTVG Trigger: TCCAACTGTGAACACAGCCAAGACTACAGCCAAGGA...GTTTTTAGAACTAGGAATAAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | GGAGGGCACCTGCCAGGGGGCTGCCGAGAGTGCGGATaGCCAGGCTTTTGGCTGTGGTCTTGGCTGTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: GGHLPGGCRECG*PGFWLWSWLWS Trigger: TGACCACAGCCAAGACCACAGCCAAAAGCCTGGCCATCCGCACTCTCGGCAGCCCCCTGGCAGGTGCCCTCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS GCA 72 bp | AAACAAGCAGGATATGGAGGGCACCTGCCAGGGGGCTaGCGAGAGTGCGGATGGCCAGGCTTTTGGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: KQAGYGGHLPGG*RECGWPGFWLW Trigger: CCACAGCCAAAAGCCTGGCCATCCGCACTCTCGGCAGCCCCCTGGCAGGTGCCCTCCATATCCTGCTTGTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | GGCTGCCGAGAGTGCGGATGGCCAGGCTTTTGGCTGTaGTCTTGGCTGTGGTCACGGCTGTGGTATTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GCRECGWPGFWL*SWLWSRLWYWL Trigger: CAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCAAAAGCCTGGCCATCCGCACTCTCGGCAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CAA 90 bp | GCTGTGGTCTTGGCTGTGGTCACGGCTGTGGTATTGGCTGTGGTATaGGCTGTGGTCACGGCTGTGGTGTTGGCTGTGTCCTTGGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: AVVLAVVTAVVLAVV*AVVTAVVLAVSLAV Trigger: TACAGCCAAGGACACAGCCAACACCACAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | TGGCTGTGGTCACGGCTGTGGTATTGGCTGTGGTATTaGCTGTGGTCACGGCTGTGGTGTTGGCTGTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: WLWSRLWYWLWY*LWSRLWCWLCP Trigger: AGGACACAGCCAACACCACAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | TGGCTGTGGTCTTGGCTGTGGTCACGGCTGTGGTATTaGCTGTGGTATTGGCTGTGGTCACGGCTGTGGTGT | + |
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Preference number: 6 (lower is better) Translates to: WLWSWLWSRLWY*LWYWLWSRLWC Trigger: ACACCACAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | GGCTTTTGGCTGTGGTCTTGGCTGTGGTCACGGCTGTaGTATTGGCTGTGGTATTGGCTGTGGTCACGGCTG | + |
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Preference number: 6 (lower is better) Translates to: GFWLWSWLWSRL*YWLWYWLWSRL Trigger: CAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCAAAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | CGAGAGTGCGGATGGCCAGGCTTTTGGCTGTGGTCTTaGCTGTGGTCACGGCTGTGGTATTGGCTGTGGTAT | + |
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Preference number: 6 (lower is better) Translates to: RECGWPGFWLWS*LWSRLWYWLWY Trigger: ATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCAAAAGCCTGGCCATCCGCACTCTCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CAA 72 bp | TTGGCTGTGGTCACGGCTGTGGTATTGGCTGTGGTATaGGCTGTGGTCACGGCTGTGGTGTTGGCTGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: LAVVTAVVLAVV*AVVTAVVLAVS Trigger: GGACACAGCCAACACCACAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CAA 72 bp | TTGGCTGTGGTCTTGGCTGTGGTCACGGCTGTGGTATaGGCTGTGGTATTGGCTGTGGTCACGGCTGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: LAVVLAVVTAVV*AVVLAVVTAVV Trigger: CACCACAGCCGTGACCACAGCCAATACCACAGCCAATACCACAGCCGTGACCACAGCCAAGACCACAGCCAA 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CAA 72 bp | TTGGCTGTGGTCACGGCTGTGGTGTTGGCTGTGTCCTaGGCTGTAGTCTTGGCTGTGTTCACAGTTGGAGTC | + |
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Preference number: 6 (lower is better) Translates to: LAVVTAVVLAVS*AVVLAVFTVGV Trigger: GACTCCAACTGTGAACACAGCCAAGACTACAGCCAAGGACACAGCCAACACCACAGCCGTGACCACAGCCAA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS TCA 72 bp | TGTCGTCCTCCTTCACTGCTTTCAGGATCACGGCACTaGCTGAATCGTTCACGGGGACCGTCACTGTATAGG | + |
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Preference number: 6 (lower is better) Translates to: CRPPSLLSGSRH*LNRSRGPSLYR Trigger: CCTATACAGTGACGGTCCCCGTGAACGATTCAGTCAGTGCCGTGATCCTGAAAGCAGTGAAGGAGGACGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CCA 72 bp | GTTGCACTTCTCATATGTTCCACTCCAGGTGCCCACTaGGCTGTCGTCCTCCTTCACTGCTTTCAGGATCAC | + |
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Preference number: 6 (lower is better) Translates to: VALLICSTPGAH*AVVLLHCFQDH Trigger: GTGATCCTGAAAGCAGTGAAGGAGGACGACAGCCCAGTGGGCACCTGGAGTGGAACATATGAGAAGTGCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CAA 90 bp | GCTGTGGTATTGGCTGTGGTCACGGCTGTGGTGTTGGCTGTGTCCTaGGCTGTAGTCTTGGCTGTGTTCACAGTTGGAGTCGTGTTTATG | + |
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Preference number: 6 (lower is better) Translates to: AVVLAVVTAVVLAVS*AVVLAVFTVGVVFM Trigger: CATAAACACGACTCCAACTGTGAACACAGCCAAGACTACAGCCAAGGACACAGCCAACACCACAGCCGTGACCACAGCCAATACCACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS TCA 72 bp | GTCCTCCTTCACTGCTTTCAGGATCACGGCACTGACTaGATCGTTCACGGGGACCGTCACTGTATAGGTTAC | + |
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Preference number: 6 (lower is better) Translates to: VLLHCFQDHGTD*IVHGDRHCIGY Trigger: GTAACCTATACAGTGACGGTCCCCGTGAACGATTCAGTCAGTGCCGTGATCCTGAAAGCAGTGAAGGAGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CAA 72 bp | ACGGCTGTGGTGTTGGCTGTGTCCTTGGCTGTAGTCTaGGCTGTGTTCACAGTTGGAGTCGTGTTTATGGTC | + |
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Preference number: 6 (lower is better) Translates to: TAVVLAVSLAVV*AVFTVGVVFMV Trigger: GACCATAAACACGACTCCAACTGTGAACACAGCCAAGACTACAGCCAAGGACACAGCCAACACCACAGCCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CAA 90 bp | GATGACTTTGAGGCTGTGCGATTGACGACGATGAGGACCTGCAGGTaGACTTTAGTCACATCCTCGGAAGTAGGAACTGTCCAGTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: DDFEAVRLTTMRTCR*TLVTSSEVGTVQFV Trigger: GACAAACTGGACAGTTCCTACTTCCGAGGATGTGACTAAAGTCAACCTGCAGGTCCTCATCGTCGTCAATCGCACAGCCTCAAAGTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CAA 90 bp | AGAGGTCCTTGTTCCATTTTCACGGATGACTTTGAGGCTGTGCGATaGACGACGATGAGGACCTGCAGGTTGACTTTAGTCACATCCTCG | + |
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Preference number: 6 (lower is better) Translates to: RGPCSIFTDDFEAVR*TTMRTCRLTLVTSS Trigger: CGAGGATGTGACTAAAGTCAACCTGCAGGTCCTCATCGTCGTCAATCGCACAGCCTCAAAGTCATCCGTGAAAATGGAACAAGGACCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000188047.2 |
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| CDS CCA 72 bp | TTGGCTGTGTTCACAGTTGGAGTCGTGTTTATGGTCTaGCTGGTCTCAGAACTCTCAGGAATAGGGGTTGAG | + |
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Preference number: 6 (lower is better) Translates to: LAVFTVGVVFMV*LVSELSGIGVE Trigger: CTCAACCCCTATTCCTGAGAGTTCTGAGACCAGCCAGACCATAAACACGACTCCAACTGTGAACACAGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CCA 72 bp | TGTGTCCTTGGCTGTAGTCTTGGCTGTGTTCACAGTTaGAGTCGTGTTTATGGTCTGGCTGGTCTCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: CVLGCSLGCVHS*SRVYGLAGLRT Trigger: AGTTCTGAGACCAGCCAGACCATAAACACGACTCCAACTGTGAACACAGCCAAGACTACAGCCAAGGACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS CAA 90 bp | CTCGGAAGTAGGAACTGTCCAGTTTGTCTGGAAGACCGACTGGCTTaGGGATGTCAAGTTATAGTAGACACTGCTGTCGTTGCACTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LGSRNCPVCLEDRLA*GCQVIVDTAVVALL Trigger: GAGAAGTGCAACGACAGCAGTGTCTACTATAACTTGACATCCCAAAGCCAGTCGGTCTTCCAGACAAACTGGACAGTTCCTACTTCCGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CAA 90 bp | GGTTGTACTTGTTCCATTTTCACGGATGACTTTGAGGCTGTGCGATaGACGACGATGAGGACCTGCAGGTTGACTTTAGTCACATCCTCG | + |
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Preference number: 6 (lower is better) Translates to: GCTCSIFTDDFEAVR*TTMRTCRLTLVTSS Trigger: CGAGGATGTGACTAAAGTCAACCTGCAGGTCCTCATCGTCGTCAATCGCACAGCCTCAAAGTCATCCGTGAAAATGGAACAAGTACAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114474.8 |
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| CDS GCA 72 bp | CCGACTGGCTTTGGGATGTCAAGTTATAGTAGACACTaGTGTCGTTGCACTTCTCATATGTTCCACTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: PTGFGMSSYSRH*CRCTSHMFHSR Trigger: CCTGGAGTGGAACATATGAGAAGTGCAACGACAGCAGTGTCTACTATAACTTGACATCCCAAAGCCAGTCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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| CDS CAA 72 bp | AGGAACTGTCCAGTTTGTCTGGAAGACCGACTGGCTTaGGGATGTCAAGTTATAGTAGACACTGCTGTCGTT | + |
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Preference number: 6 (lower is better) Translates to: RNCPVCLEDRLA*GCQVIVDTAVV Trigger: AACGACAGCAGTGTCTACTATAACTTGACATCCCAAAGCCAGTCGGTCTTCCAGACAAACTGGACAGTTCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114474.8 ENSMUST00000188047.2 |
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