RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLEKHN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078485

Ensembl transcript IDs: ENSMUST00000105571.4, ENSMUST00000217885.2, ENSMUST00000218699.2

Found 205 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGAAGTCTaGTTCCAGATAGGAGCCTCTTCATCTAGCAGGGATGTCAGAGAC +
Preference number: 2 (lower is better)
Translates to: GFLGCGHFGWEGEEV*FQIGASSSSRDVRD
Trigger: GTCTCTGACATCCCTGCTAGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
3UTR-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTGTGGCCACTTCGGGTaGGAGGGAGAGGAAGTCTTG +
Preference number: 2 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQCGHFG*EGEEVL
Trigger: CAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
3UTR-3UTR CAA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGTGGCTGGTTGTGTTGTaGAGAAGCAGCGGCCCCCTT +
Preference number: 3 (lower is better)
Translates to: PPPLQASWAVATSGGRERWLVVL*RSSGPL
Trigger: AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCA...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
3UTR TCA 72 bp AGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTaGGAAGCAGCGGCCCCCTTGGGGGCCATCAGATCC +
Preference number: 3 (lower is better)
Translates to: SLMQGGAGWLCC*EAAAPLGAIRS
Trigger: GGATCTGATGGCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
3UTR CCA 72 bp TCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTaGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCC +
Preference number: 3 (lower is better)
Translates to: STAGFLGCGHFG*EGEEVLFQIGA
Trigger: GGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGAGGCCCGTAGCCTCCTaGGGGCCTGAGGGACGCAGT +
Preference number: 4 (lower is better)
Translates to: PPPLQASWAVATSGGRERRPVAS*GPEGRS
Trigger: ACTGCGTCCCTCAGGCCCCCAGGAGGCTACGGGCCT...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCGGGCCAGGTGGCAGGTaGGCCCCATCCCTGCGAGAG +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGGPGGR*APSLRE
Trigger: CTCTCGCAGGGATGGGGCCCACCTGCCACCTGGCCC...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGGGCCAGGTGGCAGGTaGGCCCCATCCCTGCGAGAG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGGPGGR*APSLRE
Trigger: CTCTCGCAGGGATGGGGCCCACCTGCCACCTGGCCC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
69% GC, longest homopolymer 8 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGAGGCCCGTAGCCTCCTaGGGGCCTGAGGGACGCAGT +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGRPVAS*GPEGRS
Trigger: ACTGCGTCCCTCAGGCCCCCAGGAGGCTACGGGCCT...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCACTCTCTGGGCCAGGTaGCAGGTGGGCCCCATCCCT +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGTLWAR*QVGPIP
Trigger: AGGGATGGGGCCCACCTGCCACCTGGCCCAGAGAGT...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCGGTCCCACTGTTCCTaGGAGGGCAGATGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGRSHCS*EGRCCS
Trigger: GCTGCAGCATCTGCCCTCCCAGGAACAGTGGGACCG...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGACTCTCTGGGCCAGGTaGCAGGTGGGCCCCATCCCT +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGTLWAR*QVGPIP
Trigger: AGGGATGGGGCCCACCTGCCACCTGGCCCAGAGAGT...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGCAGGGAGGGACTGGCTaGTGGGGAACACTGGACACT +
Preference number: 4 (lower is better)
Translates to: PPPLQASWAVATSGGRERQGGTG*WGTLDT
Trigger: AGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCCCTG...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGGAACCCCGGTGTCTCTaGGAAGCTCTGGGTTGCAGG +
Preference number: 4 (lower is better)
Translates to: PPPLQASWAVATSGGREREPRCL*EALGCR
Trigger: CCTGCAACCCAGAGCTTCCCAGAGACACCGGGGTTC...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGAGCCTCCTGGGGGCCTaGGGGACGCAGTGGCTGTTC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWSLLGA*GTQWLF
Trigger: GAACAGCCACTGCGTCCCTCAGGCCCCCAGGAGGCT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTAGAGCCAGTGGCTaGGCTCGGCCTCACTGTGGC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGGRASG*ARPHCG
Trigger: GCCACAGTGAGGCCGAGCTCAGCCACTGGCTCTACC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTGCGAGAGACAGTCCTaGGGCACAGCAGCCATTGGC +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGCERQS*GTAAIG
Trigger: GCCAATGGCTGCTGTGCCTCAGGACTGTCTCTCGCA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGAAGCTGAGGGAAGTCTaGGGGCTGTGGGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGKLREV*GLWASA
Trigger: AGCAGAGGCCCACAGCCCTCAGACTTCCCTCAGCTT...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCTGATGTCCTGGCTGTaGTGGAATCGCAGCCGAACC +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGLMSWL*WNRSRT
Trigger: GGTTCGGCTGCGATTCCAGCACAGCCAGGACATCAG...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTGGGAGGGCAGATGCTaGAGCTTGACCCTTGAGGCA +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGWEGRC*SLTLEA
Trigger: TGCCTCAAGGGTCAAGCTGCAGCATCTGCCCTCCCA...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCCAGGTGGCAGGTaGGCCCCATCCCTGCGAGAG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLGPGGR*APSLRE
Trigger: CTCTCGCAGGGATGGGGCCCACCTGCCACCTGGCCC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTCCAGGTTTTCTGGGTaGTGTTCTGGGCCCGGGATG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGSRFSG*CSGPGM
Trigger: CATCCCGGGCCCAGAACATCACCCAGAAAACCTGGA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGTAGAGCCAGTGGCTaGGCTCGGCCTCACTGTGGC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWGRASG*ARPHCG
Trigger: GCCACAGTGAGGCCGAGCTCAGCCACTGGCTCTACC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCCAGATACTTCTCTTTaGGCTCTGCCCCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGPDTSL*ALPLGD
Trigger: GTCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGG...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGGGCACCTTTCTTGGTaGGTAAGTGGGAGCCCAGAG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGGHLSW*VSGSPE
Trigger: CTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTCAGGCACCAGCCTTTaGGAAGTAGCACCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGSGTSL*EVAPPS
Trigger: GGAAGGGGGTGCTACTTCTCAAAGGCTGGTGCCTGA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTGATGTCCTGGCTGTaGTGGAATCGCAGCCGAACC +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGLMSWL*WNRSRT
Trigger: GGTTCGGCTGCGATTCCAGCACAGCCAGGACATCAG...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTAGGCCCGTAGCCTCCTaGGGGCCTGAGGGACGCAGT +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLRPVAS*GPEGRS
Trigger: ACTGCGTCCCTCAGGCCCCCAGGAGGCTACGGGCCT...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGACTCTCTGGGCCAGGTaGCAGGTGGGCCCCATCCCT +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWTLWAR*QVGPIP
Trigger: AGGGATGGGGCCCACCTGCCACCTGGCCCAGAGAGT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGGAGGGACTGGCTGGTaGGGAACACTGGACACTCTA +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGGGTGW*GTLDTL
Trigger: TAGAGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTCAGTGCACTCATCTTaGTCAGGTCCAGGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGSVHSS*SGPGAG
Trigger: CCCTGCCCCTGGACCTGACCAAGATGAGTGCACTGA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCGTCTCTGGGAAGCTCTaGGTTGCAGGGCACCTTTCT +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGVSGKL*VAGHLS
Trigger: AGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGAC...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGTGCGAGAGACAGTCCTaGGGCACAGCAGCCATTGGC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGCERQS*GTAAIG
Trigger: GCCAATGGCTGCTGTGCCTCAGGACTGTCTCTCGCA...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGTGGGCCTCTGCTCTTaGAGGAACCCCGGTGTCTCT +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGVGLCS*RNPGVS
Trigger: AGAGACACCGGGGTTCCTTCAAGAGCAGAGGCCCAC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCAGGCGAGCTGGAGATaGCAGAGCTGGATTCAGAGA +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGQASWR*QSWIQR
Trigger: TCTCTGAATCCAGCTCTGGCATCTCCAGCTCGCCTG...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTGGGAAGCTCTGGGTTaGAGGGCACCTTTCTTGGTG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGWEALG*RAPFLV
Trigger: CACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGTTCTGGGTGATGTTCTaGGCCCGGGATGTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGFWVMF*ARDVRP
Trigger: GGGACGGACATCCCGGGCCCAGAACATCACCCAGAA...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGATGTCCTGGCTGTGCTaGAATCGCAGCCGAACCTTG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGMSWLC*NRSRTL
Trigger: CAAGGTTCGGCTGCGATTCCAGCACAGCCAGGACAT...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGGCCTGGAAGTACAGGTaGGAAGGGAACAGTTCTAGA +
Preference number: 4 (lower is better)
Translates to: PPPLQASWAVATSGGRERAWKYR*EGNSSR
Trigger: TCTAGAACTGTTCCCTTCCCACCTGTACTTCCAGGC...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTTCCCAGAGACCCCTGTaGGGGTGCCGAGTGGCATCG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLSQRPL*GCRVAS
Trigger: CGATGCCACTCGGCACCCCCACAGGGGTCTCTGGGA...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCGGTCCCACTGTTCCTaGGAGGGCAGATGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWRSHCS*EGRCCS
Trigger: GCTGCAGCATCTGCCCTCCCAGGAACAGTGGGACCG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGGTTCCTCAGAGAAGATaGCCAGGGATGCTGGGTATA +
Preference number: 4 (lower is better)
Translates to: PPPLQASWAVATSGGRERVPQRR*PGMLGI
Trigger: TATACCCAGCATCCCTGGCCATCTTCTCTGAGGAAC...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCAGGGAGGGACTGGCTaGTGGGGAACACTGGACACT +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGQGGTG*WGTLDT
Trigger: AGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCCCTG...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGTCTCTGGGAAGCTCTaGGTTGCAGGGCACCTTTCT +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGVSGKL*VAGHLS
Trigger: AGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGAC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGAGGGGGCAGGGAACTaGGTTTGCCTTCTCTGGCAG +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGEGAGN*VCLLWQ
Trigger: CTGCCAGAGAAGGCAAACCCAGTTCCCTGCCCCCTC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS-3UTR TCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCTTCTCTGTTTCCCTTaGGCGAGGGCTTTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGLLCFP*ARAFWK
Trigger: TTTCCAGAAAGCCCTCGCTCAAGGGAAACAGAGAAG...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGCAGAGAACAAGGAGTaGGGCAGGCAGCGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLAENKE*GRQRAC
Trigger: ACAGGCCCGCTGCCTGCCCCACTCCTTGTTCTCTGC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CCCCCTCCACTGCAGGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGAAAGCTAAGGCCTTCTaGTTCCTCAGAGAAGATGGC +
Preference number: 4 (lower is better)
Translates to: PPPLQASWAVATSGGRERKAKAF*FLREDG
Trigger: GCCATCTTCTCTGAGGAACCAGAAGGCCTTAGCTTT...CCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGGAGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCAGGGAGGGACTGGCTaGTGGGGAACACTGGACACT +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWQGGTG*WGTLDT
Trigger: AGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCCCTG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGTTCTTGGTGAGTAAGTaGGAGCCCAGAGGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGFLVSK*EPRGPG
Trigger: GCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAA...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGAACCCCGGTGTCTCTaGGAAGCTCTGGGTTGCAGG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWEPRCL*EALGCR
Trigger: CCTGCAACCCAGAGCTTCCCAGAGACACCGGGGTTC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTCCACTGCAGGCTTCCTaGGCTGTGGCCACTTCGGGT +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLPLQAS*AVATSG
Trigger: ACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGG...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS-3UTR TCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGAGCCTCCTGGGGGCCTaGGGGACGCAGTGGCTGTTC +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQSLLGA*GTQWLF
Trigger: GAACAGCCACTGCGTCCCTCAGGCCCCCAGGAGGCT...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTTCTCTGTTTCCCTTaGGCGAGGGCTTTCTGGAAA +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGLLCFP*ARAFWK
Trigger: TTTCCAGAAAGCCCTCGCTCAAGGGAAACAGAGAAG...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGCAGATGCTGCAGCTTaGCCCTTGAGGCACAGATTG +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGADAAA*PLRHRL
Trigger: CAATCTGTGCCTCAAGGGTCAAGCTGCAGCATCTGC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCCAGATACTTCTCTTTaGGCTCTGCCCCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGPDTSL*ALPLGD
Trigger: GTCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGG...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCACCTTTCTTGGTaGGTAAGTGGGAGCCCAGAG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWGHLSW*VSGSPE
Trigger: CTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTAAGCTGAGGGAAGTCTaGGGGCTGTGGGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLKLREV*GLWASA
Trigger: AGCAGAGGCCCACAGCCCTCAGACTTCCCTCAGCTT...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCTGATGTCCTGGCTGTaGTGGAATCGCAGCCGAACC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWLMSWL*WNRSRT
Trigger: GGTTCGGCTGCGATTCCAGCACAGCCAGGACATCAG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTTTCTGGGTGATGTTCTaGGCCCGGGATGTCCGTCCC +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLFWVMF*ARDVRP
Trigger: GGGACGGACATCCCGGGCCCAGAACATCACCCAGAA...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGATGTCCTGGCTGTGCTaGAATCGCAGCCGAACCTTG +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGMSWLC*NRSRTL
Trigger: CAAGGTTCGGCTGCGATTCCAGCACAGCCAGGACAT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGCCTGGAAGTACAGGTaGGAAGGGAACAGTTCTAGA +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGAWKYR*EGNSSR
Trigger: TCTAGAACTGTTCCCTTCCCACCTGTACTTCCAGGC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGTTCCTCAGAGAAGATaGCCAGGGATGCTGGGTATA +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGVPQRR*PGMLGI
Trigger: TATACCCAGCATCCCTGGCCATCTTCTCTGAGGAAC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTACCTACAAGCTGTGTaGGCTTCTGTAATCCTGGGA +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGYLQAV*ASVILG
Trigger: TCCCAGGATTACAGAAGCCCACACAGCTTGTAGGTA...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGTTTGAGCTCTGCCCCTaGGAGACGGGCTACTGTCAC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWFELCP*ETGYCH
Trigger: GTGACAGTAGCCCGTCTCCCAGGGGCAGAGCTCAAA...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGTCAGTGCACTCATCTTaGTCAGGTCCAGGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWSVHSS*SGPGAG
Trigger: CCCTGCCCCTGGACCTGACCAAGATGAGTGCACTGA...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGTTCTTGGTGAGTAAGTaGGAGCCCAGAGGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWFLVSK*EPRGPG
Trigger: GCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAA...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGTCTCTGGGAAGCTCTaGGTTGCAGGGCACCTTTCT +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGVSGKL*VAGHLS
Trigger: AGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGAC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGAGGGGGCAGGGAACTaGGTTTGCCTTCTCTGGCAG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLEGAGN*VCLLWQ
Trigger: CTGCCAGAGAAGGCAAACCCAGTTCCCTGCCCCCTC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGTGTGGCCACTTCGGGTaGGAGGGAGAGGAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWCGHFG*EGEEVL
Trigger: CAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACA...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS-3UTR TCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCACCTTTCTTGGTaGGTAAGTGGGAGCCCAGAG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLGHLSW*VSGSPE
Trigger: CTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTTGGGAGGGCAGATGCTaGAGCTTGACCCTTGAGGCA +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLWEGRC*SLTLEA
Trigger: TGCCTCAAGGGTCAAGCTGCAGCATCTGCCCTCCCA...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCACTCTAATTTCCAGCTaGTCCGTCCATTGGAAGAGA +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGTLISS*SVHWKR
Trigger: TCTCTTCCAATGGACGGAGCAGCTGGAAATTAGAGT...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCAGGCGAGCTGGAGATaGCAGAGCTGGATTCAGAGA +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWQASWR*QSWIQR
Trigger: TCTCTGAATCCAGCTCTGGCATCTCCAGCTCGCCTG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGTGGGAAGCTCTGGGTTaGAGGGCACCTTTCTTGGTG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWWEALG*RAPFLV
Trigger: CACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCA...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCATCAGATCTGTTCCAGGTTTTCTaGGTGATGTTCTGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: VLAGCVVEKQRPPWGPSDLFQVF*VMFWAR
Trigger: CCGGGCCCAGAACATCACCCAGAAAACCTGGAACAG...ATCTGATGGCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCGAATACACTCAGGAATaGCTGTTCCAGGTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGEYTQE*LFQVFW
Trigger: CCAGAAAACCTGGAACAGCCATTCCTGAGTGTATTC...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGATGTCCTGGCTGTGCTaGAATCGCAGCCGAACCTTG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWMSWLC*NRSRTL
Trigger: CAAGGTTCGGCTGCGATTCCAGCACAGCCAGGACAT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTCCCAGAGACCCCTGTaGGGGTGCCGAGTGGCATCG +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQSQRPL*GCRVAS
Trigger: CGATGCCACTCGGCACCCCCACAGGGGTCTCTGGGA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGAGATTGCGCCGCTCATaGAACCACACCCATATGCTC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGRLRRS*NHTHML
Trigger: GAGCATATGGGTGTGGTTCCATGAGCGGCGCAATCT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTATAATCCTCATAACTaGCACATACCACGCGGATGG +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGYNPHN*HIPRGW
Trigger: CCATCCGCGTGGTATGTGCCAGTTATGAGGATTATA...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTACCTACAAGCTGTGTaGGCTTCTGTAATCCTGGGA +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGYLQAV*ASVILG
Trigger: TCCCAGGATTACAGAAGCCCACACAGCTTGTAGGTA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGAGGGACTGGCTGGTaGGGAACACTGGACACTCTA +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLGGTGW*GTLDTL
Trigger: TAGAGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCATGTCTGTAATCTTGTaGCGAGATGTAGCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGMSVIL*RDVAGG
Trigger: ACCACCAGCTACATCTCGCCACAAGATTACAGACAT...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTTTCTTGGTGAGTAAGTaGGAGCCCAGAGGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLFLVSK*EPRGPG
Trigger: GCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAA...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCTAGATAGCAGTCACTaGTGTCCTGGCTGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWLDSSH*CPGCAG
Trigger: TCCAGCACAGCCAGGACATCAGTGACTGCTATCTAG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCCTTCTCTTCTAAGTTaGTATGGATGGCACTTAGTG +
Preference number: 4 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGPSLLS*YGWHLV
Trigger: CACTAAGTGCCATCCATATCAACTTAGAAGAGAAGG...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTCCAGATACTTCTCTTTaGGCTCTGCCCCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLPDTSL*ALPLGD
Trigger: GTCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGG...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGATCGCACAGAGGAACTaGTCATCCAGGCCTTGGATG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWIAQRN*SSRPWM
Trigger: CATCCAAGGCCTGGATGAGCAGTTCCTCTGTGCGAT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105571.4
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTCTGTTCCAGGTTTTCTaGGTGATGTTCTGGGCCCGG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLLFQVF*VMFWAR
Trigger: CCGGGCCCAGAACATCACCCAGAAAACCTGGAACAG...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTAGTCCCTCAGAACCATaGGCCTGGAAGTACAGGTGG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLSPSEP*AWKYRW
Trigger: CCACCTGTACTTCCAGGCCCATGGTTCTGAGGGACT...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGCAGAGAACAAGGAGTaGGGCAGGCAGCGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQAENKE*GRQRAC
Trigger: ACAGGCCCGCTGCCTGCCCCACTCCTTGTTCTCTGC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTGCAGAGAACAAGGAGTaGGGCAGGCAGCGGGCCTGT +
Preference number: 4 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSAENKE*GRQRAC
Trigger: ACAGGCCCGCTGCCTGCCCCACTCCTTGTTCTCTGC...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGTATAATCCTCATAACTaGCACATACCACGCGGATGG +
Preference number: 4 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGYNPHN*HIPRGW
Trigger: CCATCCGCGTGGTATGTGCCAGTTATGAGGATTATA...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGACGGGCTACTGTCACTaGGCTTCATCTTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGTGYCH*ASSSFG
Trigger: GCCAAAAGAAGATGAAGCCCAGTGACAGTAGCCCGT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCCACTGCAGGCTTCCTaGGCTGTGGCCACTTCGGGT +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQPLQAS*AVATSG
Trigger: ACCCGAAGTGGCCACAGCCCAGGAAGCCTGCAGTGG...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS-3UTR TCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTCTAGATAGCAGTCACTaGTGTCCTGGCTGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLLDSSH*CPGCAG
Trigger: TCCAGCACAGCCAGGACATCAGTGACTGCTATCTAG...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTGCGAGAGACAGTCCTaGGGCACAGCAGCCATTGGC +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQCERQS*GTAAIG
Trigger: GCCAATGGCTGCTGTGCCTCAGGACTGTCTCTCGCA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGTGGGCCTCTGCTCTTaGAGGAACCCCGGTGTCTCT +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQVGLCS*RNPGVS
Trigger: AGAGACACCGGGGTTCCTTCAAGAGCAGAGGCCCAC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGAGTGGGAGCAGTCCCTaGAATGTAAGTCCCTCAGAA +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWSGSSP*NVSPSE
Trigger: TTCTGAGGGACTTACATTCCAGGGACTGCTCCCACT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTAGATTGCGCCGCTCATaGAACCACACCCATATGCTC +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLRLRRS*NHTHML
Trigger: GAGCATATGGGTGTGGTTCCATGAGCGGCGCAATCT...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGACGGGCTACTGTCACTaGGCTTCATCTTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWTGYCH*ASSSFG
Trigger: GCCAAAAGAAGATGAAGCCCAGTGACAGTAGCCCGT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTTGGAGATGCCAGAGCTaGATTCAGAGACAGGCACAG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLWRCQS*IQRQAQ
Trigger: CTGTGCCTGTCTCTGAATCCAGCTCTGGCATCTCCA...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGAACCCCGGTGTCTCTaGGAAGCTCTGGGTTGCAGG +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQEPRCL*EALGCR
Trigger: CCTGCAACCCAGAGCTTCCCAGAGACACCGGGGTTC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
3UTR CAA 72 bp GGCTGTGGCCACTTCGGGTGGGAGGGAGAGGAAGTCTaGTTCCAGATAGGAGCCTCTTCATCTAGCAGGGAT +
Preference number: 4 (lower is better)
Translates to: GCGHFGWEGEEV*FQIGASSSSRD
Trigger: ATCCCTGCTAGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR GCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGACTCTAATTTCCAGCTaGTCCGTCCATTGGAAGAGA +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGTLISS*SVHWKR
Trigger: TCTCTTCCAATGGACGGAGCAGCTGGAAATTAGAGT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGAATACACTCAGGAATaGCTGTTCCAGGTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGEYTQE*LFQVFW
Trigger: CCAGAAAACCTGGAACAGCCATTCCTGAGTGTATTC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTAGTGGGAGCAGTCCCTaGAATGTAAGTCCCTCAGAA +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLSGSSP*NVSPSE
Trigger: TTCTGAGGGACTTACATTCCAGGGACTGCTCCCACT...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCATCAGATTACCTACAAGCTGTGTaGGCTTCTGTAATCCTGGGA +
Preference number: 4 (lower is better)
Translates to: VLAGCVVEKQRPPWGPSDYLQAV*ASVILG
Trigger: TCCCAGGATTACAGAAGCCCACACAGCTTGTAGGTA...ATCTGATGGCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTTTGAGCTCTGCCCCTaGGAGACGGGCTACTGTCAC +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQFELCP*ETGYCH
Trigger: GTGACAGTAGCCCGTCTCCCAGGGGCAGAGCTCAAA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTTTTGAGCTCTGCCCCTaGGAGACGGGCTACTGTCAC +
Preference number: 4 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSFELCP*ETGYCH
Trigger: GTGACAGTAGCCCGTCTCCCAGGGGCAGAGCTCAAA...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTCAGTGCACTCATCTTaGTCAGGTCCAGGGGCAGGG +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQSVHSS*SGPGAG
Trigger: CCCTGCCCCTGGACCTGACCAAGATGAGTGCACTGA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGATGTCTGTAATCTTGTaGCGAGATGTAGCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGMSVIL*RDVAGG
Trigger: ACCACCAGCTACATCTCGCCACAAGATTACAGACAT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGCAGATGCTGCAGCTTaGCCCTTGAGGCACAGATTG +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQADAAA*PLRHRL
Trigger: CAATCTGTGCCTCAAGGGTCAAGCTGCAGCATCTGC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCCTTCTCTTCTAAGTTaGTATGGATGGCACTTAGTG +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGPSLLS*YGWHLV
Trigger: CACTAAGTGCCATCCATATCAACTTAGAAGAGAAGG...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGAGTCCCTCAGAACCATaGGCCTGGAAGTACAGGTGG +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQSPSEP*AWKYRW
Trigger: CCACCTGTACTTCCAGGCCCATGGTTCTGAGGGACT...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTAGTCCCTCAGAACCATaGGCCTGGAAGTACAGGTGG +
Preference number: 4 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSSPSEP*AWKYRW
Trigger: CCACCTGTACTTCCAGGCCCATGGTTCTGAGGGACT...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTAAAGCTAAGGCCTTCTaGTTCCTCAGAGAAGATGGC +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLKAKAF*FLREDG
Trigger: GCCATCTTCTCTGAGGAACCAGAAGGCCTTAGCTTT...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp GTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCATCAGATTATAATCCTCATAACTaGCACATACCACGCGGATGG +
Preference number: 4 (lower is better)
Translates to: VLAGCVVEKQRPPWGPSDYNPHN*HIPRGW
Trigger: CCATCCGCGTGGTATGTGCCAGTTATGAGGATTATA...ATCTGATGGCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTTGCTCATCCAGGCCTTaGATGTCTGTAATCTTGTGG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLCSSRP*MSVILW
Trigger: CCACAAGATTACAGACATCCAAGGCCTGGATGAGCA...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105571.4
CDS-3UTR CCA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGAACTCATCCAGGCCTTaGATGTCTGTAATCTTGTGG +
Preference number: 4 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWNSSRP*MSVILW
Trigger: CCACAAGATTACAGACATCCAAGGCCTGGATGAGTT...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTCTAGATAGCAGTCACTaGTGTCCTGGCTGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSLDSSH*CPGCAG
Trigger: TCCAGCACAGCCAGGACATCAGTGACTGCTATCTAG...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGAATACACTCAGGAATaGCTGTTCCAGGTTTTCTGG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLEYTQE*LFQVFW
Trigger: CCAGAAAACCTGGAACAGCCATTCCTGAGTGTATTC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTAGATTGCGCCGCTCATaGAACCACACCCATATGCTC +
Preference number: 4 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSRLRRS*NHTHML
Trigger: GAGCATATGGGTGTGGTTCCATGAGCGGCGCAATCT...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGTCTTCTAAGTTGATATaGATGGCACTTAGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGSSKLI*MALSGS
Trigger: GCTTCCACTAAGTGCCATCCATATCAACTTAGAAGA...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR TCA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTCCTTCTCTTCTAAGTTaGTATGGATGGCACTTAGTG +
Preference number: 4 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLPSLLS*YGWHLV
Trigger: CACTAAGTGCCATCCATATCAACTTAGAAGAGAAGG...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGCCTGGAAGTACAGGTaGGAAGGGAACAGTTCTAGA +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQAWKYR*EGNSSR
Trigger: TCTAGAACTGTTCCCTTCCCACCTGTACTTCCAGGC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGAGTGGGAGCAGTCCCTaGAATGTAAGTCCCTCAGAA +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQSGSSP*NVSPSE
Trigger: TTCTGAGGGACTTACATTCCAGGGACTGCTCCCACT...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGACGGGCTACTGTCACTaGGCTTCATCTTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQTGYCH*ASSSFG
Trigger: GCCAAAAGAAGATGAAGCCCAGTGACAGTAGCCCGT...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGATGTCTGTAATCTTGTaGCGAGATGTAGCTGGTGGT +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQMSVIL*RDVAGG
Trigger: ACCACCAGCTACATCTCGCCACAAGATTACAGACAT...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CCA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTCTTCTAAGTTGATATaGATGGCACTTAGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQSSKLI*MALSGS
Trigger: GCTTCCACTAAGTGCCATCCATATCAACTTAGAAGA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTGTGGGCCTCTGCTCTaGAAGGAACCCCGGTGTCTC +
Preference number: 5 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGCGPLL*KEPRCL
Trigger: GAGACACCGGGGTTCCTTCAAGAGCAGAGGCCCACA...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCTGGGAAGCTCTGGGTaGCAGGGCACCTTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGLGSSG*QGTFLG
Trigger: ACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAG...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 90 bp CCCGGTGTCTCTGGGAAGCTCTGGGTTGCAGGGCACCTTTCTTGGTaGGTAAGTGGGAGCCCAGAGGCCCAGGCGAGCTGGAGATGCCAG +
Preference number: 5 (lower is better)
Translates to: PGVSGKLWVAGHLSW*VSGSPEAQASWRCQ
Trigger: CTGGCATCTCCAGCTCGCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGACACCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGACCACGCGGATGGTGTaGATGAGGTGGCCTTCGATG +
Preference number: 5 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGTTRMV*MRWPSM
Trigger: CATCGAAGGCCACCTCATCAACACCATCCGCGTGGT...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGCCAGATACTTCTCTTaGAGCTCTGCCCCTGGGAGA +
Preference number: 5 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGARYFS*SSAPGR
Trigger: TCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGGC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
62% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGCAGGGAACTGGGTTaGCCTTCTCTGGCAGGGGTG +
Preference number: 5 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWGRELG*PSLAGV
Trigger: CACCCCTGCCAGAGAAGGCAAACCCAGTTCCCTGCC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS TCA 90 bp CCAGAAGCCGGTCCCACTGTTCCTGGGAGGGCAGATGCTGCAGCTTaGCCCTTGAGGCACAGATTGCGCCGCTCATGGAACCACACCCAT +
Preference number: 5 (lower is better)
Translates to: PEAGPTVPGRADAAA*PLRHRLRRSWNHTH
Trigger: ATGGGTGTGGTTCCATGAGCGGCGCAATCTGTGCCTCAAGGGTCAAGCTGCAGCATCTGCCCTCCCAGGAACAGTGGGACCGGCTTCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 90 bp CTCTGGGAAGCTCTGGGTTGCAGGGCACCTTTCTTGGTGAGTAAGTaGGAGCCCAGAGGCCCAGGCGAGCTGGAGATGCCAGAGCTGGAT +
Preference number: 5 (lower is better)
Translates to: LWEALGCRAPFLVSK*EPRGPGELEMPELD
Trigger: ATCCAGCTCTGGCATCTCCAGCTCGCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCACCCAAGAGAGCCATTaGCTTTTCCAGGTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGTQESH*LFQVVE
Trigger: CTCTACCACCTGGAAAAGCAAATGGCTCTCTTGGGT...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGACCACGCGGATGGTGTaGATGAGGTGGCCTTCGATG +
Preference number: 5 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGTTRMV*MRWPSM
Trigger: CATCGAAGGCCACCTCATCAACACCATCCGCGTGGT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGGGGCAGTGGGACAGTaGAGCCAGATACTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGGAVGQ*SQILLF
Trigger: AAAGAGAAGTATCTGGCTCAACTGTCCCACTGCCCC...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
61% GC, longest homopolymer 9 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 90 bp CAAACAAGCCAGCCAGCTTCCTGGCGCTGTCTTCTCTGTTTCCCTTaGGCGAGGGCTTTCTGGAAAAGGAGGCCCGTAGCCTCCTGGGGG +
Preference number: 5 (lower is better)
Translates to: QTSQPASWRCLLCFP*ARAFWKRRPVASWG
Trigger: CCCCCAGGAGGCTACGGGCCTCCTTTTCCAGAAAGCCCTCGCTCAAGGGAAACAGAGAAGACAGCGCCAGGAAGCTGGCTGGCTTGTTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS GCA 90 bp CCTCTGCTCTTGAAGGAACCCCGGTGTCTCTGGGAAGCTCTGGGTTaGAGGGCACCTTTCTTGGTGAGTAAGTGGGAGCCCAGAGGCCCA +
Preference number: 5 (lower is better)
Translates to: PLLLKEPRCLWEALG*RAPFLVSKWEPRGP
Trigger: TGGGCCTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGACACCGGGGTTCCTTCAAGAGCAGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTCCGCCACCCTTTTTaGAATACACTCAGGAATGGC +
Preference number: 5 (lower is better)
Translates to: CRAVLAGCVVEKQRPPWGLRHPF*NTLRNG
Trigger: GCCATTCCTGAGTGTATTCAAAAAAGGGTGGCGGAG...CCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCTGGGAAGCTCTGGGTaGCAGGGCACCTTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWLGSSG*QGTFLG
Trigger: ACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 90 bp CTGGGCCAGGTGGCAGGTGGGCCCCATCCCTGCGAGAGACAGTCCTaGGGCACAGCAGCCATTGGCTATAATCCTCATAACTGGCACATA +
Preference number: 5 (lower is better)
Translates to: LGQVAGGPHPCERQS*GTAAIGYNPHNWHI
Trigger: TATGTGCCAGTTATGAGGATTATAGCCAATGGCTGCTGTGCCTCAGGACTGTCTCTCGCAGGGATGGGGCCCACCTGCCACCTGGCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 90 bp GCAGGGAAGCCTATAGTGGTTGGCACCGAGGACTCAGGGAGGGACTaGCTGGTGGGGAACACTGGACACTCTAATTTCCAGCTGCTCCGT +
Preference number: 5 (lower is better)
Translates to: AGKPIVVGTEDSGRD*LVGNTGHSNFQLLR
Trigger: ACGGAGCAGCTGGAAATTAGAGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCCCTGAGTCCTCGGTGCCAACCACTATAGGCTTCCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCCAGATACTTCTCTTaGAGCTCTGCCCCTGGGAGA +
Preference number: 5 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWARYFS*SSAPGR
Trigger: TCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGGC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGGGCAGTGGGACAGTaGAGCCAGATACTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGGAVGQ*SQILLF
Trigger: AAAGAGAAGTATCTGGCTCAACTGTCCCACTGCCCC...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
59% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGACCCAAGAGAGCCATTaGCTTTTCCAGGTGGTAGAG +
Preference number: 5 (lower is better)
Translates to: YAGRCWLVVLLRSSGPLGTQESH*LFQVVE
Trigger: CTCTACCACCTGGAAAAGCAAATGGCTCTCTTGGGT...CCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGGCAGGGAACTGGGTTaGCCTTCTCTGGCAGGGGTG +
Preference number: 5 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQGRELG*PSLAGV
Trigger: CACCCCTGCCAGAGAAGGCAAACCCAGTTCCCTGCC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS-3UTR CAA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGCTCCGCCACCCTTTTTaGAATACACTCAGGAATGGC +
Preference number: 5 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWLRHPF*NTLRNG
Trigger: GCCATTCCTGAGTGTATTCAAAAAAGGGTGGCGGAG...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp GCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTCCTTCTCTTCTAAGTaGATATGGATGGCACTTAGT +
Preference number: 5 (lower is better)
Translates to: AGRCWLVVLLRSSGPLGGSFSSK*IWMALS
Trigger: ACTAAGTGCCATCCATATCAACTTAGAAGAGAAGGA...GCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCTTCATCTTCTTTaGGCCAGTGCTGACACAGTT +
Preference number: 5 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWGLHLL*ASADTV
Trigger: AACTGTGTCAGCACTGGCCAAAAGAAGATGAAGCCC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGTGTGGGCCTCTGCTCTaGAAGGAACCCCGGTGTCTC +
Preference number: 5 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQCGPLL*KEPRCL
Trigger: GAGACACCGGGGTTCCTTCAAGAGCAGAGGCCCACA...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTTGTGGGCCTCTGCTCTaGAAGGAACCCCGGTGTCTC +
Preference number: 5 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSCGPLL*KEPRCL
Trigger: GAGACACCGGGGTTCCTTCAAGAGCAGAGGCCCACA...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS GCA 90 bp GGAGGGACTGGCTGGTGGGGAACACTGGACACTCTAATTTCCAGCTaGTCCGTCCATTGGAAGAGAGTGAACCTCGGCCTCTACCTACAA +
Preference number: 5 (lower is better)
Translates to: GGTGWWGTLDTLISS*SVHWKRVNLGLYLQ
Trigger: TTGTAGGTAGAGGCCGAGGTTCACTCTCTTCCAATGGACGGAGCAGCTGGAAATTAGAGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS GCA 90 bp GCAGGGGCAGTGGGACAGTTGAGCCAGATACTTCTCTTTGAGCTCTaGCCCTGGGAGACGGGCTACTGTCACTGGGCTTCATCTTCTTTT +
Preference number: 5 (lower is better)
Translates to: AGAVGQLSQILLFEL*PWETGYCHWASSSF
Trigger: AAAAGAAGATGAAGCCCAGTGACAGTAGCCCGTCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGGCTCAACTGTCCCACTGCCCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 90 bp CCATCAGTCGGGCAGATGTTCAATTCCGTCAGTGGGAGCAGTCCCTaGAATGTAAGTCCCTCAGAACCATGGGCCTGGAAGTACAGGTGG +
Preference number: 5 (lower is better)
Translates to: PSVGQMFNSVSGSSP*NVSPSEPWAWKYRW
Trigger: CCACCTGTACTTCCAGGCCCATGGTTCTGAGGGACTTACATTCCAGGGACTGCTCCCACTGACGGAATTGAACATCTGCCCGACTGATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 90 bp CTGCCCCTGGGAGACGGGCTACTGTCACTGGGCTTCATCTTCTTTTaGCCAGTGCTGACACAGTTAGAGTCGGTCTGGTTAGGTACAGGA +
Preference number: 5 (lower is better)
Translates to: LPLGDGLLSLGFIFF*PVLTQLESVWLGTG
Trigger: TCCTGTACCTAACCAGACCGACTCTAACTGTGTCAGCACTGGCCAAAAGAAGATGAAGCCCAGTGACAGTAGCCCGTCTCCCAGGGGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp GTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGGGCCATCAGATGAGGCACAGCAGCCATaGGCTATAATCCTCATAACT +
Preference number: 5 (lower is better)
Translates to: VLAGCVVEKQRPPWGPSDEAQQP*AIILIT
Trigger: AGTTATGAGGATTATAGCCAATGGCTGCTGTGCCTC...ATCTGATGGCCCCCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGCTTCATCTTCTTTaGGCCAGTGCTGACACAGTT +
Preference number: 5 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLGLHLL*ASADTV
Trigger: AACTGTGTCAGCACTGGCCAAAAGAAGATGAAGCCC...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTCTGCTCATCCAGGCCTaGGATGTCTGTAATCTTGTG +
Preference number: 5 (lower is better)
Translates to: SYAGRCWLVVLLRSSGPLLLIQA*DVCNLV
Trigger: CACAAGATTACAGACATCCAAGGCCTGGATGAGCAG...AAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105571.4
CDS-3UTR CAA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCTGGGAAGCTCTGGGTaGCAGGGCACCTTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQLGSSG*QGTFLG
Trigger: ACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAG...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp TTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGCGGCCCCCTTGGGAACTCATCCAGGCCTaGGATGTCTGTAATCTTGTG +
Preference number: 5 (lower is better)
Translates to: LCRAVLAGCVVEKQRPPWELIQA*DVCNLV
Trigger: CACAAGATTACAGACATCCAAGGCCTGGATGAGTTC...CCAAGGGGGCCGCTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 90 bp GGCTTCATCTTCTTTTGGCCAGTGCTGACACAGTTAGAGTCGGTCTaGTTAGGTACAGGAGGGGCAGGGAAGCCTATAGTGGTTGGCACC +
Preference number: 5 (lower is better)
Translates to: GFIFFWPVLTQLESV*LGTGGAGKPIVVGT
Trigger: GGTGCCAACCACTATAGGCTTCCCTGCCCCTCCTGTACCTAACCAGACCGACTCTAACTGTGTCAGCACTGGCCAAAAGAAGATGAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTGCCAGATACTTCTCTTaGAGCTCTGCCCCTGGGAGA +
Preference number: 5 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSARYFS*SSAPGR
Trigger: TCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGGC...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGGGCTTCATCTTCTTTaGGCCAGTGCTGACACAGTT +
Preference number: 5 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQGLHLL*ASADTV
Trigger: AACTGTGTCAGCACTGGCCAAAAGAAGATGAAGCCC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS GCA 90 bp CTTGATAGGTCAGGTCCAGGCGATGTCTGTATCGCACAGAGGAACTaGTCATCCAGGCCTTGGATGTCTGTAATCTTGTGGCGAGATGTA +
Preference number: 5 (lower is better)
Translates to: LDRSGPGDVCIAQRN*SSRPWMSVILWRDV
Trigger: TACATCTCGCCACAAGATTACAGACATCCAAGGCCTGGATGAGCAGTTCCTCTGTGCGATACAGACATCGCCTGGACCTGACCTATCAAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105571.4
CDS-3UTR CAA 90 bp AACTGCGTAGTCTTATGCAGGGCGGTGCTGGCTGGTTGTGTTGTTGAGAAGCAGGAGGCACAGCAGCCATaGGCTATAATCCTCATAACT +
Preference number: 5 (lower is better)
Translates to: NCVVLCRAVLAGCVVEKQEAQQP*AIILIT
Trigger: AGTTATGAGGATTATAGCCAATGGCTGCTGTGCCTC...CTGCTTCTCAACAACACAACCAGCCAGCACCGCCCTGCATAAGACTACGCAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS-3UTR CAA 90 bp CACTTCGGGTGGGAGGGAGAGGAAGTCTTGTTCCAGATAGGAGCCTCTTCATCTGAACTCATCCAGGCCTaGGATGTCTGTAATCTTGTG +
Preference number: 5 (lower is better)
Translates to: HFGWEGEEVLFQIGASSSELIQA*DVCNLV
Trigger: CACAAGATTACAGACATCCAAGGCCTGGATGAGTTC...AGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218699.2
CDS CCA 90 bp ATGAGAAAGGAGCGAATCTCCTTTTCCTTCTCTTCTAAGTTGATATaGATGGCACTTAGTGGAAGCTCCCCCTTAAAGCTAAGGCCTTCT +
Preference number: 5 (lower is better)
Translates to: MRKERISFSFSSKLI*MALSGSSPLKLRPS
Trigger: AGAAGGCCTTAGCTTTAAGGGGGAGCTTCCACTAAGTGCCATCCATATCAACTTAGAAGAGAAGGAAAAGGAGATTCGCTCCTTTCTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 90 bp GAACCCCGGTGTCTCTGGGAAGCTCTGGGTTGCAGGGCACCTTTCTaGGTGAGTAAGTGGGAGCCCAGAGGCCCAGGCGAGCTGGAGATG +
Preference number: 6 (lower is better)
Translates to: EPRCLWEALGCRAPF*VSKWEPRGPGELEM
Trigger: CATCTCCAGCTCGCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGACACCGGGGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 90 bp GGCTTCCTGGGCTGTGGCCACTTCGGGTGGGAGGGAGAGGAAGTCTaGTTCCAGATAGGAGCCTCTTCATCTGGGGGAGGGGGCAGGGAA +
Preference number: 6 (lower is better)
Translates to: GFLGCGHFGWEGEEV*FQIGASSSGGGGRE
Trigger: TTCCCTGCCCCCTCCCCCAGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACAGCCCAGGAAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS GCA 72 bp AGAAGCCGGTCCCACTGTTCCTGGGAGGGCAGATGCTaGAGCTTGACCCTTGAGGCACAGATTGCGCCGCTC +
Preference number: 6 (lower is better)
Translates to: RSRSHCSWEGRC*SLTLEAQIAPL
Trigger: GAGCGGCGCAATCTGTGCCTCAAGGGTCAAGCTGCAGCATCTGCCCTCCCAGGAACAGTGGGACCGGCTTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp GCTGAGCTCGGCCTCACTGTGGCAGAGAACAAGGAGTaGGGCAGGCAGCGGGCCTGTAATCTGGAAGGCATG +
Preference number: 6 (lower is better)
Translates to: AELGLTVAENKE*GRQRACNLEGM
Trigger: CATGCCTTCCAGATTACAGGCCCGCTGCCTGCCCCACTCCTTGTTCTCTGCCACAGTGAGGCCGAGCTCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 72 bp GGTCCCACTGTTCCTGGGAGGGCAGATGCTGCAGCTTaGCCCTTGAGGCACAGATTGCGCCGCTCATGGAAC +
Preference number: 6 (lower is better)
Translates to: GPTVPGRADAAA*PLRHRLRRSWN
Trigger: GTTCCATGAGCGGCGCAATCTGTGCCTCAAGGGTCAAGCTGCAGCATCTGCCCTCCCAGGAACAGTGGGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp CGGTCCCACTGTTCCTGGGAGGGCAGATGCTGCAGCTaGACCCTTGAGGCACAGATTGCGCCGCTCATGGAA +
Preference number: 6 (lower is better)
Translates to: RSHCSWEGRCCS*TLEAQIAPLME
Trigger: TTCCATGAGCGGCGCAATCTGTGCCTCAAGGGTCAAGCTGCAGCATCTGCCCTCCCAGGAACAGTGGGACCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp GCCTCTGGGCCACTGTCTAGGTTCAGTGCACTCATCTaGGTCAGGTCCAGGGGCAGGGGCAGTGGGACAGTT +
Preference number: 6 (lower is better)
Translates to: ASGPLSRFSALI*VRSRGRGSGTV
Trigger: AACTGTCCCACTGCCCCTGCCCCTGGACCTGACCAAGATGAGTGCACTGAACCTAGACAGTGGCCCAGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp TGTCTCTGGGAAGCTCTGGGTTGCAGGGCACCTTTCTaGGTGAGTAAGTGGGAGCCCAGAGGCCCAGGCGAG +
Preference number: 6 (lower is better)
Translates to: CLWEALGCRAPF*VSKWEPRGPGE
Trigger: CTCGCCTGGGCCTCTGGGCTCCCACTTACTCACCAAGAAAGGTGCCCTGCAACCCAGAGCTTCCCAGAGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp GGCTGTGGCCACTTCGGGTGGGAGGGAGAGGAAGTCTaGTTCCAGATAGGAGCCTCTTCATCTGGGGGAGGG +
Preference number: 6 (lower is better)
Translates to: GCGHFGWEGEEV*FQIGASSSGGG
Trigger: CCCTCCCCCAGATGAAGAGGCTCCTATCTGGAACAAGACTTCCTCTCCCTCCCACCCGAAGTGGCCACAGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS CAA 90 bp CCAAACAAGCCAGCCAGCTTCCTGGCGCTGTCTTCTCTGTTTCCCTaGAGCGAGGGCTTTCTGGAAAAGGAGGCCCGTAGCCTCCTGGGG +
Preference number: 6 (lower is better)
Translates to: PNKPASFLALSSLFP*SEGFLEKEARSLLG
Trigger: CCCCAGGAGGCTACGGGCCTCCTTTTCCAGAAAGCCCTCGCTCAAGGGAAACAGAGAAGACAGCGCCAGGAAGCTGGCTGGCTTGTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 72 bp CAGCCAGCTTCCTGGCGCTGTCTTCTCTGTTTCCCTTaGGCGAGGGCTTTCTGGAAAAGGAGGCCCGTAGCC +
Preference number: 6 (lower is better)
Translates to: QPASWRCLLCFP*ARAFWKRRPVA
Trigger: GGCTACGGGCCTCCTTTTCCAGAAAGCCCTCGCTCAAGGGAAACAGAGAAGACAGCGCCAGGAAGCTGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 72 bp GAACTGGGTTTGCCTTCTCTGGCAGGGGTGACAAGCTaGGGGAAGTCTGAGGGCTGTGGGCCTCTGCTCTTG +
Preference number: 6 (lower is better)
Translates to: ELGLPSLAGVTS*GKSEGCGPLLL
Trigger: CAAGAGCAGAGGCCCACAGCCCTCAGACTTCCCTCAGCTTGTCACCCCTGCCAGAGAAGGCAAACCCAGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
CDS CCA 72 bp AGAACAAGGAGTGGGGCAGGCAGCGGGCCTGTAATCTaGAAGGCATGTTCTCTGGACCCATCAGTCGGGCAG +
Preference number: 6 (lower is better)
Translates to: RTRSGAGSGPVI*KACSLDPSVGQ
Trigger: CTGCCCGACTGATGGGTCCAGAGAACATGCCTTCCAGATTACAGGCCCGCTGCCTGCCCCACTCCTTGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp CCAGCCAGCTTCCTGGCGCTGTCTTCTCTGTTTCCCTaGAGCGAGGGCTTTCTGGAAAAGGAGGCCCGTAGC +
Preference number: 6 (lower is better)
Translates to: PASFLALSSLFP*SEGFLEKEARS
Trigger: GCTACGGGCCTCCTTTTCCAGAAAGCCCTCGCTCAAGGGAAACAGAGAAGACAGCGCCAGGAAGCTGGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 90 bp GTGGGCCCCATCCCTGCGAGAGACAGTCCTGAGGCACAGCAGCCATaGGCTATAATCCTCATAACTGGCACATACCACGCGGATGGTGTT +
Preference number: 6 (lower is better)
Translates to: VGPIPARDSPEAQQP*AIILITGTYHADGV
Trigger: AACACCATCCGCGTGGTATGTGCCAGTTATGAGGATTATAGCCAATGGCTGCTGTGCCTCAGGACTGTCTCTCGCAGGGATGGGGCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS GCA 72 bp GGAATCGCAGCCGAACCTTGGAGTAGTGAACAACCTTaGCTAGGTTCCTCACAGGTGTCCTCCGCCACCCTT +
Preference number: 6 (lower is better)
Translates to: GIAAEPWSSEQP*LGSSQVSSATL
Trigger: AAGGGTGGCGGAGGACACCTGTGAGGAACCTAGGCAAGGTTGTTCACTACTCCAAGGTTCGGCTGCGATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS GCA 72 bp GGCTGGTGGGGAACACTGGACACTCTAATTTCCAGCTaGTCCGTCCATTGGAAGAGAGTGAACCTCGGCCTC +
Preference number: 6 (lower is better)
Translates to: GWWGTLDTLISS*SVHWKRVNLGL
Trigger: GAGGCCGAGGTTCACTCTCTTCCAATGGACGGAGCAGCTGGAAATTAGAGTGTCCAGTGTTCCCCACCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS GCA 72 bp GTGGGACAGTTGAGCCAGATACTTCTCTTTGAGCTCTaGCCCTGGGAGACGGGCTACTGTCACTGGGCTTCA +
Preference number: 6 (lower is better)
Translates to: VGQLSQILLFEL*PWETGYCHWAS
Trigger: TGAAGCCCAGTGACAGTAGCCCGTCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGGCTCAACTGTCCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp CCTATAGTGGTTGGCACCGAGGACTCAGGGAGGGACTaGCTGGTGGGGAACACTGGACACTCTAATTTCCAG +
Preference number: 6 (lower is better)
Translates to: PIVVGTEDSGRD*LVGNTGHSNFQ
Trigger: CTGGAAATTAGAGTGTCCAGTGTTCCCCACCAGCCAGTCCCTCCCTGAGTCCTCGGTGCCAACCACTATAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp TGGTGGTGTGTAGGGATCAGCATAGAGCGGGGAGTGTaGAATGTCCAAAGAGTGATCCTGAGCCTCTGGGCC +
Preference number: 6 (lower is better)
Translates to: WWCVGISIERGV*NVQRVILSLWA
Trigger: GGCCCAGAGGCTCAGGATCACTCTTTGGACATTCCACACTCCCCGCTCTATGCTGATCCCTACACACCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp GGTTTATCTCCCAGAGACCCCTGTGGGGGTGCCGAGTaGCATCGTTGTAGACCCAAGAGAGCCATTTGCTTT +
Preference number: 6 (lower is better)
Translates to: GLSPRDPCGGAE*HRCRPKRAICF
Trigger: AAAGCAAATGGCTCTCTTGGGTCTACAACGATGCCACTCGGCACCCCCACAGGGGTCTCTGGGAGATAAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS TCA 72 bp ACAGGTGGGAAGGGAACAGTTCTAGATAGCAGTCACTaGTGTCCTGGCTGTGCTGGAATCGCAGCCGAACCT +
Preference number: 6 (lower is better)
Translates to: TGGKGTVLDSSH*CPGCAGIAAEP
Trigger: AGGTTCGGCTGCGATTCCAGCACAGCCAGGACATCAGTGACTGCTATCTAGAACTGTTCCCTTCCCACCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp CAGTTGAGCCAGATACTTCTCTTTGAGCTCTGCCCCTaGGAGACGGGCTACTGTCACTGGGCTTCATCTTCT +
Preference number: 6 (lower is better)
Translates to: QLSQILLFELCP*ETGYCHWASSS
Trigger: AGAAGATGAAGCCCAGTGACAGTAGCCCGTCTCCCAGGGGCAGAGCTCAAAGAGAAGTATCTGGCTCAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp GCCTTGGATGTCTGTAATCTTGTGGCGAGATGTAGCTaGTGGTGTGTAGGGATCAGCATAGAGCGGGGAGTG +
Preference number: 6 (lower is better)
Translates to: ALDVCNLVARCS*WCVGISIERGV
Trigger: CACTCCCCGCTCTATGCTGATCCCTACACACCACCAGCTACATCTCGCCACAAGATTACAGACATCCAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp ATCCCTGCGAGAGACAGTCCTGAGGCACAGCAGCCATaGGCTATAATCCTCATAACTGGCACATACCACGCG +
Preference number: 6 (lower is better)
Translates to: IPARDSPEAQQP*AIILITGTYHA
Trigger: CGCGTGGTATGTGCCAGTTATGAGGATTATAGCCAATGGCTGCTGTGCCTCAGGACTGTCTCTCGCAGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp TTCTTTTGGCCAGTGCTGACACAGTTAGAGTCGGTCTaGTTAGGTACAGGAGGGGCAGGGAAGCCTATAGTG +
Preference number: 6 (lower is better)
Translates to: FFWPVLTQLESV*LGTGGAGKPIV
Trigger: CACTATAGGCTTCCCTGCCCCTCCTGTACCTAACCAGACCGACTCTAACTGTGTCAGCACTGGCCAAAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp GTCTGTATCGCACAGAGGAACTGCTCATCCAGGCCTTaGATGTCTGTAATCTTGTGGCGAGATGTAGCTGGT +
Preference number: 6 (lower is better)
Translates to: VCIAQRNCSSRP*MSVILWRDVAG
Trigger: ACCAGCTACATCTCGCCACAAGATTACAGACATCCAAGGCCTGGATGAGCAGTTCCTCTGTGCGATACAGAC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105571.4
CDS CAA 72 bp AACACTGGACACTCTAATTTCCAGCTGCTCCGTCCATaGGAAGAGAGTGAACCTCGGCCTCTACCTACAAGC +
Preference number: 6 (lower is better)
Translates to: NTGHSNFQLLRP*EESEPRPLPTS
Trigger: GCTTGTAGGTAGAGGCCGAGGTTCACTCTCTTCCAATGGACGGAGCAGCTGGAAATTAGAGTGTCCAGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 72 bp TGTCTGTATCGCACAGAGGAACTGCTCATCCAGGCCTaGGATGTCTGTAATCTTGTGGCGAGATGTAGCTGG +
Preference number: 6 (lower is better)
Translates to: CLYRTEELLIQA*DVCNLVARCSW
Trigger: CCAGCTACATCTCGCCACAAGATTACAGACATCCAAGGCCTGGATGAGCAGTTCCTCTGTGCGATACAGACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105571.4
CDS CAA 72 bp CGATGTCTGTATCGCACAGAGGAACTCATCCAGGCCTaGGATGTCTGTAATCTTGTGGCGAGATGTAGCTGG +
Preference number: 6 (lower is better)
Translates to: RCLYRTEELIQA*DVCNLVARCSW
Trigger: CCAGCTACATCTCGCCACAAGATTACAGACATCCAAGGCCTGGATGAGTTCCTCTGTGCGATACAGACATCG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CCA 72 bp GATGTCTGTATCGCACAGAGGAACTCATCCAGGCCTTaGATGTCTGTAATCTTGTGGCGAGATGTAGCTGGT +
Preference number: 6 (lower is better)
Translates to: DVCIAQRNSSRP*MSVILWRDVAG
Trigger: ACCAGCTACATCTCGCCACAAGATTACAGACATCCAAGGCCTGGATGAGTTCCTCTGTGCGATACAGACATC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000217885.2
ENSMUST00000218699.2
CDS CAA 90 bp CCTTCGATGAGAAAGGAGCGAATCTCCTTTTCCTTCTCTTCTAAGTaGATATGGATGGCACTTAGTGGAAGCTCCCCCTTAAAGCTAAGG +
Preference number: 6 (lower is better)
Translates to: PSMRKERISFSFSSK*IWMALSGSSPLKLR
Trigger: CCTTAGCTTTAAGGGGGAGCTTCCACTAAGTGCCATCCATATCAACTTAGAAGAGAAGGAAAAGGAGATTCGCTCCTTTCTCATCGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105571.4
ENSMUST00000217885.2
ENSMUST00000218699.2