RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLEKHJ1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035278

Ensembl transcript IDs: ENSMUST00000036805.7, ENSMUST00000218209.2, ENSMUST00000219378.2, ENSMUST00000219959.2

Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATaGCATGGAGAACGAGGACCACAGACCCTGCCCACCTCCTCTGGA +
Preference number: 1 (lower is better)
Translates to: ARSLDVDTQGVLAGR*HGERGPQTLPTSSG
Trigger: TCCAGAGGAGGTGGGCAGGGTCTGTGGTCCTCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGACCGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR CCA 90 bp GAGCCAATACAAGTAGTCCGCCCATCCTTAGGCAGGCTATTCAGCTaGAACCTGGCCTCCTCGGAGATGCCAAACTGCTCCAGGGGGTCC +
Preference number: 1 (lower is better)
Translates to: EPIQVVRPSLGRLFS*NLASSEMPNCSRGS
Trigger: GGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCAGGTTCCAGCTGAATAGCCTGCCTAAGGATGGGCGGACTACTTGTATTGGCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
3UTR GCA 90 bp GGCAGGCTATTCAGCTGGAACCTGGCCTCCTCGGAGATGCCAAACTaGTCCAGGGGGTCCTTGCCAGTCATCTTCCTGATCTCATTCCTG +
Preference number: 1 (lower is better)
Translates to: GRLFSWNLASSEMPN*SRGSLPVIFLISFL
Trigger: CAGGAATGAGATCAGGAAGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCAGGTTCCAGCTGAATAGCCTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
3UTR-3UTR TCA 90 bp GGAACCTGGCCTCCTCGGAGATGCCAAACTGCTCCAGGGGGTCCTTGCCAGTCAGCTTCCATCCAGTCCTaGCACTGCTCTTGGCTACAG +
Preference number: 2 (lower is better)
Translates to: GTWPPRRCQTAPGGPCQSASIQS*HCSWLQ
Trigger: CTGTAGCCAAGAGCAGTGTCAGGACTGGATGGAAGC...TGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCAGGTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
3UTR-3UTR CCA 90 bp CAATGGATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGGCAGGGAGATGGCATaGAGAACGAGGACCACAGAC +
Preference number: 2 (lower is better)
Translates to: QWIGELCQARSLDVDTQGGREMA*RTRTTD
Trigger: GTCTGTGGTCCTCGTTCTCCATGCCATCTCCCTGCC...CCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATCCATTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR-3UTR TCA 90 bp GATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTCTCCTCTGGACCTTTTaGACAGATGTATTAAAACCT +
Preference number: 2 (lower is better)
Translates to: DRGAVPGSVPGCGHSRGALLWTF*TDVLKP
Trigger: AGGTTTTAATACATCTGTTCAAAAGGTCCAGAGGAG...AGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR-3UTR TCA 90 bp GTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGCTCCTCTGGACCTTTTaGACAGATGTATTAAAACCT +
Preference number: 2 (lower is better)
Translates to: VPGCGHSRGAGREMAWRTLLWTF*TDVLKP
Trigger: AGGTTTTAATACATCTGTTCAAAAGGTCCAGAGGAG...CGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR CCA 72 bp AGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTaGCAGGGAGATGGCATGGAGAACGAGGACCACAGA +
Preference number: 3 (lower is better)
Translates to: RLGPWMWTLKGC*QGDGMENEDHR
Trigger: TCTGTGGTCCTCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR GCA 72 bp GCAGGCTATTCAGCTGGAACCTGGCCTCCTCGGAGATaGCAAACTGCTCCAGGGGGTCCTTGCCAGTCATCT +
Preference number: 3 (lower is better)
Translates to: AGYSAGTWPPRR*QTAPGGPCQSS
Trigger: AGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCAGGTTCCAGCTGAATAGCCTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
3UTR CCA 72 bp CAAGTAGTCCGCCCATCCTTAGGCAGGCTATTCAGCTaGAACCTGGCCTCCTCGGAGATGCCAAACTGCTCC +
Preference number: 3 (lower is better)
Translates to: QVVRPSLGRLFS*NLASSEMPNCS
Trigger: GGAGCAGTTTGGCATCTCCGAGGAGGCCAGGTTCCAGCTGAATAGCCTGCCTAAGGATGGGCGGACTACTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
3UTR-3UTR CAA 90 bp GCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGCCTCCTCTGGACCTTTaGAACAGATGTATTAAAACC +
Preference number: 3 (lower is better)
Translates to: AVPGSVPGCGHSRGAGREPPLDL*NRCIKT
Trigger: GGTTTTAATACATCTGTTCAAAAGGTCCAGAGGAGG...CTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR GCA 72 bp CAGGGAGATGGCATGGAGAACGAGGACCACAGACCCTaGCCACCTCCTCTGGACCTTTTGAACAGATGTATT +
Preference number: 3 (lower is better)
Translates to: QGDGMENEDHRP*PPPLDLLNRCI
Trigger: AATACATCTGTTCAAAAGGTCCAGAGGAGGTGGGCAGGGTCTGTGGTCCTCGTTCTCCATGCCATCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR GCA 72 bp CATTATACATTCATCTGGCAATGGATAGGGGAGCTGTaGCAGGCTCGGTCCCTGGATGTGGACACTCAAGGG +
Preference number: 3 (lower is better)
Translates to: HYTFIWQWIGEL*QARSLDVDTQG
Trigger: CCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATCCATTGCCAGATGAATGTATAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
3UTR TCA 72 bp AAAAGAGGTACCTTTATTAAAGAGCAGGCTGAGCACTaGGGCCAGCACCCATGCCCTGCTCTATCAGCAGGA +
Preference number: 3 (lower is better)
Translates to: KRGTFIKEQAEH*GQHPCPALSAG
Trigger: TCCTGCTGATAGAGCAGGGCATGGGTGCTGGCCTCAGTGCTCAGCCTGCTCTTTAATAAAGGTACCTCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR GCA 90 bp GGAGATGGCATGGAGAACGAGGACCACAGACCCTGCCCACCTCCTCTGGACCTTCTCGGCCGCCATCTCTaGCGGCTGTCGGGACAGCGC +
Preference number: 4 (lower is better)
Translates to: GDGMENEDHRPCPPPLDLLGRHL*RLSGQR
Trigger: GCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAG...AAGGTCCAGAGGAGGTGGGCAGGGTCTGTGGTCCTCGTTCTCCATGCCATCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS-3UTR GCA 90 bp GGAGATGGCATGGAGAACGAGGACCACAGACCCTGCCCACCTCCTCTGGACCTTTCTTGGGGCCCCGCATaGCCAGCTCGGCCGCCATCT +
Preference number: 4 (lower is better)
Translates to: GDGMENEDHRPCPPPLDLSWGPA*PARPPS
Trigger: AGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGA...AAGGTCCAGAGGAGGTGGGCAGGGTCTGTGGTCCTCGTTCTCCATGCCATCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS-3UTR GCA 90 bp GATGCCAAACTGCTCCAGGGGGTCCTTGCCAGTCATCTTCCTGATCTCATTCCTCTCGGCCGCCATCTCTaGCGGCTGTCGGGACAGCGC +
Preference number: 4 (lower is better)
Translates to: DAKLLQGVLASHLPDLIPLGRHL*RLSGQR
Trigger: GCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAG...AGGAATGAGATCAGGAAGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
CDS-3UTR GCA 90 bp GTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGTCGGAGATGCCAAACTaGTCCAGGGGGTCCTTGCCA +
Preference number: 4 (lower is better)
Translates to: VPGCGHSRGAGREMAWRTSEMPN*SRGSLP
Trigger: TGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGA...CGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR GCA 90 bp TCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGATGGCCTCCTCGGAGATaGCAAACTGCTCCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: SLDVDTQGVLAGRWHGERWPPRR*QTAPGG
Trigger: ACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCA...TCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR GCA 90 bp CAATGGATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGTCATTCCTGGCCCGCTaGAGAGCTTCCATCCAGTCC +
Preference number: 4 (lower is better)
Translates to: QWIGELCQARSLDVDTQGSFLAR*RASIQS
Trigger: GGACTGGATGGAAGCTCTGCAGCGGGCCAGGAATGA...CCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATCCATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219959.2
CDS-3UTR CCA 90 bp TCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGAGGCAGGCTATTCAGCTaGAACCTGGCCTCCTCGGAG +
Preference number: 4 (lower is better)
Translates to: SLDVDTQGVLAGRWHGERGRLFS*NLASSE
Trigger: CTCCGAGGAGGCCAGGTTCCAGCTGAATAGCCTGCC...TCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR TCA 90 bp CAATGGATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGCTTCCATCCAGTCCTaGCACTGCTCTTGGCTACAG +
Preference number: 4 (lower is better)
Translates to: QWIGELCQARSLDVDTQGASIQS*HCSWLQ
Trigger: CTGTAGCCAAGAGCAGTGTCAGGACTGGATGGAAGC...CCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATCCATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR TCA 90 bp CAATGGATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGTGCCAGTCATCTTCCTaGTCTCATTCCTGGCCCGCT +
Preference number: 4 (lower is better)
Translates to: QWIGELCQARSLDVDTQGCQSSS*SHSWPA
Trigger: AGCGGGCCAGGAATGAGATCAGGAAGATGACTGGCA...CCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATCCATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219959.2
CDS-3UTR GCA 90 bp GATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTTGTCGGGACAGCGCCTaGAACTCTTTCTCGTTGTAC +
Preference number: 4 (lower is better)
Translates to: DRGAVPGSVPGCGHSRGACRDSA*NSFSLY
Trigger: GTACAACGAGAAAGAGTTGCAGGCGCTGTCCCGACA...AGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS-3UTR GCA 90 bp TCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGATCGGAGATGCCAAACTaGTCCAGGGGGTCCTTGCCA +
Preference number: 4 (lower is better)
Translates to: SLDVDTQGVLAGRWHGERSEMPN*SRGSLP
Trigger: TGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGA...TCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR TCA 90 bp TCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGAGCTTCCATCCAGTCCTaGCACTGCTCTTGGCTACAG +
Preference number: 4 (lower is better)
Translates to: SLDVDTQGVLAGRWHGERASIQS*HCSWLQ
Trigger: CTGTAGCCAAGAGCAGTGTCAGGACTGGATGGAAGC...TCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR TCA 90 bp GCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGCTACAGCATTCAAAGTaGTATTTCCTGCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: AVPGSVPGCGHSRGAGRELQHSK*YFLLRS
Trigger: AGACCTCAGCAGGAAATATCACTTTGAATGCTGTAG...CTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR TCA 90 bp TCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGAAGTAAAAGAGGAAGTTaGCCACCAGCTTCACCAGTC +
Preference number: 4 (lower is better)
Translates to: SLDVDTQGVLAGRWHGERSKRGS*PPASPV
Trigger: GACTGGTGAAGCTGGTGGTCAACTTCCTCTTTTACT...TCGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS-3UTR TCA 90 bp CAATGGATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGTGCCAGTCATCTTCCTaGTCTCATTCCTGTAGAAGA +
Preference number: 4 (lower is better)
Translates to: QWIGELCQARSLDVDTQGCQSSS*SHSCRR
Trigger: TCTTCTACAGGAATGAGATCAGGAAGATGACTGGCA...CCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATCCATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS-3UTR TCA 90 bp GTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGCTACAGCATTCAAAGTaGTATTTCCTGCTGAGGTCT +
Preference number: 4 (lower is better)
Translates to: VPGCGHSRGAGREMAWRTLQHSK*YFLLRS
Trigger: AGACCTCAGCAGGAAATATCACTTTGAATGCTGTAG...CGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR CCA 90 bp GATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTTCCAACACATTTAACTaGGAGCCAATACAAGTAGTC +
Preference number: 4 (lower is better)
Translates to: DRGAVPGSVPGCGHSRGASNTFN*EPIQVV
Trigger: GACTACTTGTATTGGCTCCCAGTTAAATGTGTTGGA...AGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR GCA 90 bp CACAGACCCTGCCCACCTCCTCTGGACCTTTTGAACAGATGTATTAAAACCTATTGGCCTCCTCGGAGATaGCAAACTGCTCCAGGGGGT +
Preference number: 4 (lower is better)
Translates to: HRPCPPPLDLLNRCIKTYWPPRR*QTAPGG
Trigger: ACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCA...ATAGGTTTTAATACATCTGTTCAAAAGGTCCAGAGGAGGTGGGCAGGGTCTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR CCA 90 bp CACAGACCCTGCCCACCTCCTCTGGACCTTTTGAACAGATGTATTAAAACCTATGGCAGGCTATTCAGCTaGAACCTGGCCTCCTCGGAG +
Preference number: 4 (lower is better)
Translates to: HRPCPPPLDLLNRCIKTYGRLFS*NLASSE
Trigger: CTCCGAGGAGGCCAGGTTCCAGCTGAATAGCCTGCC...ATAGGTTTTAATACATCTGTTCAAAAGGTCCAGAGGAGGTGGGCAGGGTCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR CCA 90 bp GGAGATGGCATGGAGAACGAGGACCACAGACCCTGCCCACCTCCTCTGGACCTTTCCAACACATTTAACTaGGAGCCAATACAAGTAGTC +
Preference number: 4 (lower is better)
Translates to: GDGMENEDHRPCPPPLDLSNTFN*EPIQVV
Trigger: GACTACTTGTATTGGCTCCCAGTTAAATGTGTTGGA...AAGGTCCAGAGGAGGTGGGCAGGGTCTGTGGTCCTCGTTCTCCATGCCATCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR GCA 90 bp CCTGATCTCATTCCTGTAGAAGATGAGGCTCTGTCGCATGTATTCGTAGCTGGCTGTCGGGACAGCGCCTaGAACTCTTTCTCGTTGTAC +
Preference number: 4 (lower is better)
Translates to: PDLIPVEDEALSHVFVAGCRDSA*NSFSLY
Trigger: GTACAACGAGAAAGAGTTGCAGGCGCTGTCCCGACA...GCCAGCTACGAATACATGCGACAGAGCCTCATCTTCTACAGGAATGAGATCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
CDS GCA 90 bp TCACCAGTCGCCGCTTGGCCACGCTGCCCTTCTTGGGGCCCCGCATaGCCAGCTCGGCCGCCATCTCTGCCGGCTGTCGGGACAGCGCCT +
Preference number: 5 (lower is better)
Translates to: SPVAAWPRCPSWGPA*PARPPSLPAVGTAP
Trigger: AGGCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGTGGCCAAGCGGCGACTGGTGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS GCA 90 bp TGGGCCACCAGCGGACGCGGGATCCAGGACAAACGTAGGCTCCGCTaGCCTTCTTGGGGCCCCGCATGCCCAGCTCGGCCGCCATCTCTG +
Preference number: 5 (lower is better)
Translates to: WATSGRGIQDKRRLR*PSWGPACPARPPSL
Trigger: CAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGGAGCCTACGTTTGTCCTGGATCCCGCGTCCGCTGGTGGCCCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218209.2
CDS GCA 90 bp ATCCAGGACAAACGTAGGCTCCGCTGCCCTTCTTGGGGCCCCGCATaGCCAGCTCGGCCGCCATCTCTGCCGGCTGTCGGGACAGCGCCT +
Preference number: 5 (lower is better)
Translates to: IQDKRRLRCPSWGPA*PARPPSLPAVGTAP
Trigger: AGGCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGGAGCCTACGTTTGTCCTGGAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218209.2
CDS GCA 90 bp GCTGCCCTTCTTGGGGCCCCGCATGCCCAGCTCGGCCGCCATCTCTaGCGGCTGTCGGGACAGCGCCTGCAACTCTTTCTCGTTGTACCG +
Preference number: 5 (lower is better)
Translates to: AALLGAPHAQLGRHL*RLSGQRLQLFLVVP
Trigger: CGGTACAACGAGAAAGAGTTGCAGGCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036805.7
ENSMUST00000218209.2
ENSMUST00000219378.2
CDS-3UTR CAA 90 bp GTCCCTGGATGTGGACACTCAAGGGGTGCTGGCAGGGAGATGGCATGGAGAACGGCCACGCTGCCCTTCTaGGGGCCCCGCATGCCCAGC +
Preference number: 5 (lower is better)
Translates to: VPGCGHSRGAGREMAWRTATLPF*GPRMPS
Trigger: GCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGTGGC...CGTTCTCCATGCCATCTCCCTGCCAGCACCCCTTGAGTGTCCACATCCAGGGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS TCA 90 bp CTCCGAGGGGCTCGGCCTCGTCCGGGCGGAAGTAAAAGAGGAAGTTaGCCACCAGCTTCACCAGTCGCCGCTTGGCCACGCTGCCCTTCT +
Preference number: 5 (lower is better)
Translates to: LRGARPRPGGSKRGS*PPASPVAAWPRCPS
Trigger: AGAAGGGCAGCGTGGCCAAGCGGCGACTGGTGAAGCTGGTGGTCAACTTCCTCTTTTACTTCCGCCCGGACGAGGCCGAGCCCCTCGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS TCA 90 bp CGGAGATGCCAAACTGCTCCAGGGGGTCCTTGCCAGTCATCTTCCTaGTCTCATTCCTGGCCCGCTGCAGAGCTTCCATCCAGTCCTGAC +
Preference number: 5 (lower is better)
Translates to: RRCQTAPGGPCQSSS*SHSWPAAELPSSPD
Trigger: GTCAGGACTGGATGGAAGCTCTGCAGCGGGCCAGGAATGAGATCAGGAAGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219959.2
CDS-3UTR CAA 90 bp GATAGGGGAGCTGTGCCAGGCTCGGTCCCTGGATGTGGACACTCAAGGGGTGCTGTCCTGACACTGCTCTaGGCTACAGCATTCAAAGTG +
Preference number: 5 (lower is better)
Translates to: DRGAVPGSVPGCGHSRGAVLTLL*ATAFKV
Trigger: CACTTTGAATGCTGTAGCCAAGAGCAGTGTCAGGAC...AGCACCCCTTGAGTGTCCACATCCAGGGACCGAGCCTGGCACAGCTCCCCTATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS-3UTR CAA 90 bp GGAGATGGCATGGAGAACGAGGACCACAGACCCTGCCCACCTCCTCTGGACCTTGTCCTGACACTGCTCTaGGCTACAGCATTCAAAGTG +
Preference number: 5 (lower is better)
Translates to: GDGMENEDHRPCPPPLDLVLTLL*ATAFKV
Trigger: CACTTTGAATGCTGTAGCCAAGAGCAGTGTCAGGAC...AAGGTCCAGAGGAGGTGGGCAGGGTCTGTGGTCCTCGTTCTCCATGCCATCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000036805.7
ENSMUST00000219959.2
CDS GCA 72 bp GCCGCTTGGCCACGCTGCCCTTCTTGGGGCCCCGCATaGCCAGCTCGGCCGCCATCTCTGCCGGCTGTCGGG +
Preference number: 6 (lower is better)
Translates to: AAWPRCPSWGPA*PARPPSLPAVG
Trigger: CCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGTGGCCAAGCGGC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS CCA 72 bp CTCCAGCAACAGGGCTCCGAGGGGCGCTGCCCTTCTTaGGGCCCCGCATGCCCAGCTCGGCCGCCATCTCTG +
Preference number: 6 (lower is better)
Translates to: LQQQGSEGRCPS*GPACPARPPSL
Trigger: CAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGCCCCTCGGAGCCCTGTTGCTGGAG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219378.2
CDS GCA 72 bp AAACGTAGGCTCCGCTGCCCTTCTTGGGGCCCCGCATaGCCAGCTCGGCCGCCATCTCTGCCGGCTGTCGGG +
Preference number: 6 (lower is better)
Translates to: KRRLRCPSWGPA*PARPPSLPAVG
Trigger: CCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGGAGCCTACGTTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218209.2
CDS GCA 72 bp AGCGGACGCGGGATCCAGGACAAACGTAGGCTCCGCTaGCCTTCTTGGGGCCCCGCATGCCCAGCTCGGCCG +
Preference number: 6 (lower is better)
Translates to: SGRGIQDKRRLR*PSWGPACPARP
Trigger: CGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGGAGCCTACGTTTGTCCTGGATCCCGCGTCCGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218209.2
CDS GCA 72 bp CTTGGGGCCCCGCATGCCCAGCTCGGCCGCCATCTCTaGCGGCTGTCGGGACAGCGCCTGCAACTCTTTCTC +
Preference number: 6 (lower is better)
Translates to: LGAPHAQLGRHL*RLSGQRLQLFL
Trigger: GAGAAAGAGTTGCAGGCGCTGTCCCGACAGCCGGCAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000036805.7
ENSMUST00000218209.2
ENSMUST00000219378.2
CDS CAA 72 bp AGCTTCACCAGTCGCCGCTTGGCCACGCTGCCCTTCTaGGGGCCCCGCATGCCCAGCTCGGCCGCCATCTCT +
Preference number: 6 (lower is better)
Translates to: SFTSRRLATLPF*GPRMPSSAAIS
Trigger: AGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGTGGCCAAGCGGCGACTGGTGAAGCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS CCA 72 bp GGGATCCAGGACAAACGTAGGCTCCGCTGCCCTTCTTaGGGCCCCGCATGCCCAGCTCGGCCGCCATCTCTG +
Preference number: 6 (lower is better)
Translates to: GIQDKRRLRCPS*GPACPARPPSL
Trigger: CAGAGATGGCGGCCGAGCTGGGCATGCGGGGCCCCAAGAAGGGCAGCGGAGCCTACGTTTGTCCTGGATCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218209.2
CDS TCA 72 bp GCTCGGCCTCGTCCGGGCGGAAGTAAAAGAGGAAGTTaGCCACCAGCTTCACCAGTCGCCGCTTGGCCACGC +
Preference number: 6 (lower is better)
Translates to: ARPRPGGSKRGS*PPASPVAAWPR
Trigger: GCGTGGCCAAGCGGCGACTGGTGAAGCTGGTGGTCAACTTCCTCTTTTACTTCCGCCCGGACGAGGCCGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS CAA 72 bp GCCTCCTCGGAGATGCCAAACTGCTCCAGGGGGTCCTaGCCAGTCATCTTCCTGATCTCATTCCTGGCCCGC +
Preference number: 6 (lower is better)
Translates to: ASSEMPNCSRGS*PVIFLISFLAR
Trigger: GCGGGCCAGGAATGAGATCAGGAAGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219959.2
CDS CAA 90 bp TGGAACCTGGCCTCCTCGGAGATGCCAAACTGCTCCAGGGGGTCCTaGCCAGTCATCTTCCTGATCTCATTCCTGGCCCGCTGCAGAGCT +
Preference number: 6 (lower is better)
Translates to: WNLASSEMPNCSRGS*PVIFLISFLARCRA
Trigger: AGCTCTGCAGCGGGCCAGGAATGAGATCAGGAAGATGACTGGCAAGGACCCCCTGGAGCAGTTTGGCATCTCCGAGGAGGCCAGGTTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000219959.2
CDS CAA 90 bp GTAGCTGGCCCGCTGCAGAGCTTCCATCCAGTCCTGACACTGCTCTaGGCTACAGCATTCAAAGTGATATTTCCTGCTGAGGTCTTCGAC +
Preference number: 6 (lower is better)
Translates to: VAGPLQSFHPVLTLL*ATAFKVIFPAEVFD
Trigger: GTCGAAGACCTCAGCAGGAAATATCACTTTGAATGCTGTAGCCAAGAGCAGTGTCAGGACTGGATGGAAGCTCTGCAGCGGGCCAGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000036805.7
CDS CAA 90 bp ATTCCTGGCCCGCTGCAGAGCTTCCATCCAGTCCTGACACTGCTCTaGGCTACAGCATTCAAAGTGATATTTCCTGCTGAGGTCTTCGAC +
Preference number: 6 (lower is better)
Translates to: IPGPLQSFHPVLTLL*ATAFKVIFPAEVFD
Trigger: GTCGAAGACCTCAGCAGGAAATATCACTTTGAATGCTGTAGCCAAGAGCAGTGTCAGGACTGGATGGAAGCTCTGCAGCGGGCCAGGAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219959.2