RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLEKHG6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038167

Ensembl transcript IDs: ENSMUST00000042647.7

Found 142 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTaGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGCACTCT +
Preference number: 1 (lower is better)
Translates to: SRVLRGDAWVRLGLR*ILEVESGGGGGQHS
Trigger: AGAGTGCTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCGGGGCGCTTCGCCGCTaGGGAGCTTGGGGGTCGGGA +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWIGALRR*GAWGSG
Trigger: TCCCGACCCCCAAGCTCCCCAGCGGCGAAGCGCCCC...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCGTGTGGAGGGCCTGGTaGTGGGGGACTCCGTGCCCT +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWIVWRAW*WGTPCP
Trigger: AGGGCACGGAGTCCCCCAGCACCAGGCCCTCCACAC...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGCACTCTTCTCCGGTCCTCTGGTaGCAGGCGGGGCATCCCAAA +
Preference number: 4 (lower is better)
Translates to: GLRWILEVESGGGGGQHSSPVLW*QAGHPK
Trigger: TTTGGGATGCCCCGCCTGCCACCAGAGGACCGGAGA...AGAGTGCTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp CCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTGTAGTGTCTCCGGTCCTCTaGTGGCAGGCGGGGCATCCC +
Preference number: 4 (lower is better)
Translates to: PGEVVASTLRETISLGGVVSPVL*WQAGHP
Trigger: GGGATGCCCCGCCTGCCACCAGAGGACCGGAGACAC...TACACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTCCCTCGGCACTGCTCTaGGAGTCCTCCGGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: SPGEVVASTLRETISLGGPSALL*ESSGEG
Trigger: GCCTTCCCCGGAGGACTCCCAGAGCAGTGCCGAGGG...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GTCAGGCTTGGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCCAGCAGCAGCTGCCTaGTATACTCAGGGGCAACCC +
Preference number: 4 (lower is better)
Translates to: VRLGLRWILEVESGGGGGPAAAA*YTQGQP
Trigger: GGGTTGCCCCTGAGTATACCAGGCAGCTGCTGCTGG...GCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACCAAGCCTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp GGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGCACTCTTTGAGTTTGGGGGAGTaGGGTGGGCCGACCCCAAAA +
Preference number: 4 (lower is better)
Translates to: GLRWILEVESGGGGGQHSLSLGE*GGPTPK
Trigger: TTTTGGGGTCGGCCCACCTCACTCCCCCAAACTCAA...AGAGTGCTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCCCAGCAGAGTCAGTATaGGTGGGAGAGTGGGGGAGC +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWIPAESV*VGEWGS
Trigger: GCTCCCCCACTCTCCCACTCATACTGACTCTGCTGG...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp CCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTGTAGCTCGGGGCTTCTCTTaGGCACAGCCTGCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: PGEVVASTLRETISLGGVARGFS*AQPAAA
Trigger: TGCTGCTGCAGGCTGTGCGCAAGAGAAGCCCCGAGC...TACACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GTCAGGCTTGGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCCACAGCCTCGATCATaGCATTCAGGGCCTCTTGGG +
Preference number: 4 (lower is better)
Translates to: VRLGLRWILEVESGGGGGPQPRS*HSGPLG
Trigger: CCCAAGAGGCCCTGAATGCCATGATCGAGGCTGTGG...GCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACCAAGCCTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTTGGAGGGCCTGGTGCTaGGGGACTCCGTGCCCTGGT +
Preference number: 4 (lower is better)
Translates to: NVQFLTSRVLRGDAWVRLWRAWC*GTPCPG
Trigger: ACCAGGGCACGGAGTCCCCCAGCACCAGGCCCTCCA...AAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGGCTTGGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGGCTCCATCGATCCTTTaGTTGGCCAGCTCCTCCCTG +
Preference number: 4 (lower is better)
Translates to: RLGLRWILEVESGGGGGQAPSIL*LASSSL
Trigger: CAGGGAGGAGCTGGCCAACCAAAGGATCGATGGAGC...CTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACCAAGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCCCCCTCATCTTCATCTaGGGACTCCCAGGGGCTTTC +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWIPLIFI*GLPGAF
Trigger: GAAAGCCCCTGGGAGTCCTCAGATGAAGATGAGGGG...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTTCAGCCTCCGGGGCTTaGCATTCCCTGGTTCCGGTT +
Preference number: 4 (lower is better)
Translates to: SPGEVVASTLRETISLGGSASGA*HSLVPV
Trigger: AACCGGAACCAGGGAATGGCAAGCCCCGGAGGCTGA...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTCCTTCCAGCAGCAGCTaGCTGGTATACTCAGGGGCA +
Preference number: 4 (lower is better)
Translates to: SPGEVVASTLRETISLGGPSSSS*LVYSGA
Trigger: TGCCCCTGAGTATACCAGGCAGCTGCTGCTGGAAGG...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp CAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGTGCTGGGGGACTCCGTaGCCTGGTTGCGATAGAGGG +
Preference number: 4 (lower is better)
Translates to: QNVQFLTSRVLRGDAWVRCWGTP*PGCDRG
Trigger: CCCTCTATCGCAACCAGGGCACGGAGTCCCCCAGCA...CCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTGAAGCTACCAGGCCTTaGAGGGGGCCCTCATTTGGA +
Preference number: 4 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGEATRP*RGPSFG
Trigger: TCCAAATGAGGGCCCCCTCCAAGGCCTGGTAGCTTC...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCTCTGGCCAGAGCCCTTaGCAAAGGGGACATAGTGCT +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWISGQSP*QRGHSA
Trigger: AGCACTATGTCCCCTTTGCCAAGGGCTCTGGCCAGA...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGGCATTCAGGGCCTCTTaGGCTCGGGGCTCGGGGCTT +
Preference number: 4 (lower is better)
Translates to: GFVCETKCSVLDLQGPQRAFRAS*ARGSGL
Trigger: AAGCCCCGAGCCCCGAGCCCAAGAGGCCCTGAATGC...CCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp AGGCTTGGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGATAGATTCCCAGCAGTaGTGTGGGCAGAGGTCTGAT +
Preference number: 4 (lower is better)
Translates to: RLGLRWILEVESGGGGGQIDSQQ*CGQRSD
Trigger: ATCAGACCTCTGCCCACAGCACTGCTGGGAATCTAT...CTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACCAAGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCTCTTCCAGGATGGGCTaGAGCACCTCCTCCCAAAAT +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWISSRMG*STSSQN
Trigger: ATTTTGGGAGGAGGTGCTGCAGCCCATCCTGGAAGA...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTAAGGTTGGCCAGAGGTaGGAGTGTCTTCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGKVGQR*ECLPGW
Trigger: CCATCCTGGAAGACACTCGCACCTCTGGCCAACCTT...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAAAGGTGTGGAGGGCCTaGTGCTGGGGGACTCCGTGC +
Preference number: 4 (lower is better)
Translates to: RGSSVRQNVQFLTSRVLRKVWRA*CWGTPC
Trigger: GCACGGAGTCCCCCAGCACCAGGCCCTCCACACCTT...TCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp AGGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTGCAAGGGGACGTCTCTaGGTTCCAGGGTGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: RAQGFVCETKCSVLDLQGARGRL*VPGWRR
Trigger: CCTTCTCCACCCTGGAACTCAGAGACGTCCCCTTGC...ACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp GGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTTCTCCAGCCACCGTaGACGCTCTGTAGAACTGGG +
Preference number: 4 (lower is better)
Translates to: GLRGSSVRQNVQFLTSRVLLQPP*TLCRTG
Trigger: CCCAGTTCTACAGAGCGTGCACGGTGGCTGGAGAAG...GACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTGGTAGATCAGCTCAGTaGTCAGGAGTTCCCACAGTG +
Preference number: 4 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGGRSAQ*SGVPTV
Trigger: CACTGTGGGAACTCCTGACCACTGAGCTGATCTACC...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTGAGTGTCTTCCAGGATaGGCTGCAGCACCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: RAQGFVCETKCSVLDLQGECLPG*AAAPPP
Trigger: GGGAGGAGGTGCTGCAGCCCATCCTGGAAGACACTC...ACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTACAGGATCCAAAGGTTaGCCAGAGGTGCGAGTGTCT +
Preference number: 4 (lower is better)
Translates to: SPGEVVASTLRETISLGGTGSKG*PEVRVS
Trigger: AGACACTCGCACCTCTGGCCAACCTTTGGATCCTGT...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTCACTGCACGAAGGTGTaGAACAGTGGGTTCGTGTCT +
Preference number: 4 (lower is better)
Translates to: SPGEVVASTLRETISLGGHCTKV*NSGFVS
Trigger: AGACACGAACCCACTGTTCCACACCTTCGTGCAGTG...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTATCCAGGGTGGAGAATaGACGCAGGTTCTTCTCCAC +
Preference number: 4 (lower is better)
Translates to: SPGEVVASTLRETISLGGIQGGE*TQVLLH
Trigger: GTGGAGAAGAACCTGCGTCCATTCTCCACCCTGGAT...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp AGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAACCGTAGCCAGAGTCTaGGGCGTCATCCGGCATGGA +
Preference number: 4 (lower is better)
Translates to: RGSSVRQNVQFLTSRVLRTVARV*GVIRHG
Trigger: TCCATGCCGGATGACGCCTCAGACTCTGGCTACGGT...TCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp AGGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTGGGACCCTCATTCTCTaGAGCTGGGCTAGAGTCAGC +
Preference number: 4 (lower is better)
Translates to: RAQGFVCETKCSVLDLQGGTLIL*SWARVS
Trigger: GCTGACTCTAGCCCAGCTGCAGAGAATGAGGGTCCC...ACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCTCCATGCCTCTTCTCTaGGTCTGGTTCCCGAAGCAC +
Preference number: 4 (lower is better)
Translates to: GLRGSSVRQNVQFLTSRVSMPLL*VWFPKH
Trigger: GTGCTTCGGGAACCAGACCCAGAGAAGAGGCATGGA...GACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTAGTGCTTCCTGCTGGTaGCAAAGCTGGCGGTTCATC +
Preference number: 4 (lower is better)
Translates to: NVQFLTSRVLRGDAWVRLSASCW*QSWRFI
Trigger: GATGAACCGCCAGCTTTGCCACCAGCAGGAAGCACT...AAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTATTTGGTGATGCGCTaGTGGGGCTTGATGAGCAAG +
Preference number: 4 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGYLVMR*WGLMSK
Trigger: CTTGCTCATCAAGCCCCACCAGCGCATCACCAAATA...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp CAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGTCACCCTGTCGGACCTaGCCATTTATGTGTCGCAGG +
Preference number: 4 (lower is better)
Translates to: QNVQFLTSRVLRGDAWVRSPCRT*PFMCRR
Trigger: CCTGCGACACATAAATGGCCAGGTCCGACAGGGTGA...CCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGGTTGGGGTCTCGCAGTaGTCGGCACACGAGTTTCTC +
Preference number: 4 (lower is better)
Translates to: GFVCETKCSVLDLQGPQRVGVSQ*SAHEFL
Trigger: GAGAAACTCGTGTGCCGACCACTGCGAGACCCCAAC...CCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCGCATCCCAAACATGCTaGATGTGTGCAGCCTTATTT +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWIASQTC*MCAALF
Trigger: AAATAAGGCTGCACACATTCAGCATGTTTGGGATGC...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp AGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGACTGTCCGCCTTGCGTTaGGGTTTGGTTACCAGGAGC +
Preference number: 4 (lower is better)
Translates to: RGSSVRQNVQFLTSRVLRLSALR*GLVTRS
Trigger: GCTCCTGGTAACCAAACCTCAACGCAAGGCGGACAG...TCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp AGGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCTCTTGCGCACAGCCTaGAGCAGCAGTGGGTATTTG +
Preference number: 4 (lower is better)
Translates to: RAQGFVCETKCSVLDLQGLLRTA*SSSGYL
Trigger: CAAATACCCACTGCTGCTGCAGGCTGTGCGCAAGAG...ACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp GGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGGTAGAACTGGGACAGTaGACAGTGAGGGCACTGGAG +
Preference number: 4 (lower is better)
Translates to: GFVCETKCSVLDLQGPQRVELGQ*TVRALE
Trigger: CTCCAGTGCCCTCACTGTGCACTGTCCCAGTTCTAC...CCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR TCA 90 bp AATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTCACACTGGAATTCTGTaGGGTGGATCAACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: NVQFLTSRVLRGDAWVRLHTGIL*GGSTGS
Trigger: GCTTCCTGTTGATCCACCTCACAGAATTCCAGTGTG...AAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp AGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGAGGGGGCCCTCATTTaGAGGACCAAAGGCTTGCAT +
Preference number: 4 (lower is better)
Translates to: RGSSVRQNVQFLTSRVLREGALI*RTKGLH
Trigger: ATGCAAGCCTTTGGTCCTCCAAATGAGGGCCCCCTC...TCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTTGGTGATGCGCTGGTaGGGCTTGATGAGCAAGTCA +
Preference number: 4 (lower is better)
Translates to: GFVCETKCSVLDLQGPQRLVMRW*GLMSKS
Trigger: TGACTTGCTCATCAAGCCCCACCAGCGCATCACCAA...CCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp GGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGCCTTGCGTTGAGGTTTaGTTACCAGGAGCACATCGG +
Preference number: 4 (lower is better)
Translates to: GFVCETKCSVLDLQGPQRPCVEV*LPGAHR
Trigger: CCGATGTGCTCCTGGTAACCAAACCTCAACGCAAGG...CCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CCA 90 bp CAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGGCACTGGAGACACACTaGAATTCTGTGAGGTGGATC +
Preference number: 4 (lower is better)
Translates to: QNVQFLTSRVLRGDAWVRALETH*NSVRWI
Trigger: GATCCACCTCACAGAATTCCAGTGTGTCTCCAGTGC...CCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR GCA 90 bp ACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTTGAGGTGGATCAACATGCTGAATGTGTaGAGCCTTATTTCTAGCTCA +
Preference number: 4 (lower is better)
Translates to: TSRVLRGDAWVRLGLRWINMLNV*SLISSS
Trigger: TGAGCTAGAAATAAGGCTGCACACATTCAGCATGTT...GATCCACCTCAAACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp CGCAGGAAGGACTCCACAGCCTCGATCATGGCATTCAGGGCCTCTTaGGCTCGGGGCTCGGGGCTTCTCTTGCGCACAGCCTGCAGCAGC +
Preference number: 5 (lower is better)
Translates to: RRKDSTASIMAFRAS*ARGSGLLLRTACSS
Trigger: GCTGCTGCAGGCTGTGCGCAAGAGAAGCCCCGAGCCCCGAGCCCAAGAGGCCCTGAATGCCATGATCGAGGCTGTGGAGTCCTTCCTGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp AATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTTCGCCGCTGGGGAGCTaGGGGGTCGGGAGGCTGGGG +
Preference number: 5 (lower is better)
Translates to: NVQFLTSRVLRGDAWVRLSPLGS*GVGRLG
Trigger: CCCCAGCCTCCCGACCCCCAAGCTCCCCAGCGGCGA...AAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp CGTCTTCCTCCTCCGACCAGATTGGTGGGGCTCTCCTGGGTAGACTaGCTCCTCTTAGGATCCCTTCTGGCAACTCTGGGGCGCTTCGCC +
Preference number: 5 (lower is better)
Translates to: RLPPPTRLVGLSWVD*LLLGSLLATLGRFA
Trigger: GGCGAAGCGCCCCAGAGTTGCCAGAAGGGATCCTAAGAGGAGGCAGTCTACCCAGGAGAGCCCCACCAATCTGGTCGGAGGAGGAAGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp GGCGTGTCCAGCTGTATGATGTGGGGGACCCTCATTCTCTGCAGCTaGGCTAGAGTCAGCCTCCGGGGCTTGCCATTCCCTGGTTCCGGT +
Preference number: 5 (lower is better)
Translates to: GVSSCMMWGTLILCS*ARVSLRGLPFPGSG
Trigger: ACCGGAACCAGGGAATGGCAAGCCCCGGAGGCTGACTCTAGCCCAGCTGCAGAGAATGAGGGTCCCCCACATCATACAGCTGGACACGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp GTCAGGCTTGGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCGGAGGACGGATGACCTaGGCTCTGTCCGCCTTGCGT +
Preference number: 5 (lower is better)
Translates to: VRLGLRWILEVESGGGGGGGRMT*ALSALR
Trigger: ACGCAAGGCGGACAGAGCCAAGGTCATCCGTCCTCC...GCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACCAAGCCTGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp GGCACTATCGCCTCCCTCTCCTATCTCCCAGTGTCTCCGGTCCTCTaGTGGCAGGCGGGGCATCCCAAACATGCTGAATGTGTGCAGCCT +
Preference number: 5 (lower is better)
Translates to: GTIASLSYLPVSPVL*WQAGHPKHAECVQP
Trigger: AGGCTGCACACATTCAGCATGTTTGGGATGCCCCGCCTGCCACCAGAGGACCGGAGACACTGGGAGATAGGAGAGGGAGGCGATAGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp GGCTTGCCATTCCCTGGTTCCGGTTCCGAGGCTCCATCGATCCTTTaGTTGGCCAGCTCCTCCCTGATCTCCCTGAGCATGTCCTCCCGT +
Preference number: 5 (lower is better)
Translates to: GLPFPGSGSEAPSIL*LASSSLISLSMSSR
Trigger: ACGGGAGGACATGCTCAGGGAGATCAGGGAGGAGCTGGCCAACCAAAGGATCGATGGAGCCTCGGAACCGGAACCAGGGAATGGCAAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp GGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGCACTCTGGCTCCATCGATCCTTaGGTTGGCCAGCTCCTCCCT +
Preference number: 5 (lower is better)
Translates to: GLRWILEVESGGGGGQHSGSIDP*VGQLLP
Trigger: AGGGAGGAGCTGGCCAACCAAAGGATCGATGGAGCC...AGAGTGCTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTGTCAGCCTCCGGGGCTaGCCATTCCCTGGTTCCGGT +
Preference number: 5 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGVSLRG*PFPGSG
Trigger: ACCGGAACCAGGGAATGGCAAGCCCCGGAGGCTGAC...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp CATGCCTCTTCTCTGGGTCTGGTTCCCGAAGCACCAGAGGAGACATaGCTCGGGTCTGGCCAGAGCCCTTGGCAAAGGGGACATAGTGCT +
Preference number: 5 (lower is better)
Translates to: HASSLGLVPEAPEET*LGSGQSPWQRGHSA
Trigger: AGCACTATGTCCCCTTTGCCAAGGGCTCTGGCCAGACCCGAGGCATGTCTCCTCTGGTGCTTCGGGAACCAGACCCAGAGAAGAGGCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp TCTCCACCTCCTCGCTGGAGGGCTCTAGCACCTCATAGGGTCCTATaGGCTGGGCCACAGCCATCAAACTCTCCTGCTCTTCACCCTGTC +
Preference number: 5 (lower is better)
Translates to: SPPPRWRALAPHRVL*AGPQPSNSPALHPV
Trigger: GACAGGGTGAAGAGCAGGAGAGTTTGATGGCTGTGGCCCAGCGCATAGGACCCTATGAGGTGCTAGAGCCCTCCAGCGAGGAGGTGGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp AGGTGGGCCGACCCCAAAATAGCTTCCATGCCTCTTCTCTGGGTCTaGTTCCCGAAGCACCAGAGGAGACATGCCTCGGGTCTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: RWADPKIASMPLLWV*FPKHQRRHASGLAR
Trigger: TCTGGCCAGACCCGAGGCATGTCTCCTCTGGTGCTTCGGGAACCAGACCCAGAGAAGAGGCATGGAAGCTATTTTGGGGTCGGCCCACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp GGAGTGAGGTGGGCCGACCCCAAAATAGCTTCCATGCCTCTTCTCTaGGTCTGGTTCCCGAAGCACCAGAGGAGACATGCCTCGGGTCTG +
Preference number: 5 (lower is better)
Translates to: GVRWADPKIASMPLL*VWFPKHQRRHASGL
Trigger: CAGACCCGAGGCATGTCTCCTCTGGTGCTTCGGGAACCAGACCCAGAGAAGAGGCATGGAAGCTATTTTGGGGTCGGCCCACCTCACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTGGAAGCTACCAGGCCTaGGAGGGGGCCCTCATTTGG +
Preference number: 5 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGGSYQA*EGALIW
Trigger: CCAAATGAGGGCCCCCTCCAAGGCCTGGTAGCTTCC...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp GGTTTGAGGTGGATCCTTGAGGTAGAGTCCGGGGGAGGTGGTGGCCAGCACTCTCCATCGATCCTTTGGTaGGCCAGCTCCTCCCTGATC +
Preference number: 5 (lower is better)
Translates to: GLRWILEVESGGGGGQHSPSILW*ASSSLI
Trigger: GATCAGGGAGGAGCTGGCCAACCAAAGGATCGATGG...AGAGTGCTGGCCACCACCTCCCCCGGACTCTACCTCAAGGATCCACCTCAAACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 90 bp AGGGCGTGTCTTCATCTGTATCCTCAGTCACCACCAGGCGGGGGATaGTGGCGAACTCTAAAGTCCTCCCCTCGGCACTGCTCTGGGAGT +
Preference number: 5 (lower is better)
Translates to: RACLHLYPQSPPGGG*WRTLKSSPRHCSGS
Trigger: ACTCCCAGAGCAGTGCCGAGGGGAGGACTTTAGAGTTCGCCATCATCCCCCGCCTGGTGGTGACTGAGGATACAGATGAAGACACGCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp TCACCCAGCGTCTGTCTTCCGGAGCGCTTGTGTTTCTCACACCACTaGACGAAGGTGTGGAACAGTGGGTTCGTGTCTTGCTGCTCCCGC +
Preference number: 5 (lower is better)
Translates to: SPSVCLPERLCFSHH*TKVWNSGFVSCCSR
Trigger: GCGGGAGCAGCAAGACACGAACCCACTGTTCCACACCTTCGTGCAGTGGTGTGAGAAACACAAGCGCTCCGGAAGACAGACGCTGGGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp CCTTCTCGTCCCTCCTTCACCCGCACAGGTCCTTCCAGCAGCAGCTaGCTGGTATACTCAGGGGCAACCCCTAGTACAGGAGTCATCAGA +
Preference number: 5 (lower is better)
Translates to: PSRPSFTRTGPSSSS*LVYSGATPSTGVIR
Trigger: TCTGATGACTCCTGTACTAGGGGTTGCCCCTGAGTATACCAGGCAGCTGCTGCTGGAAGGACCTGTGCGGGTGAAGGAGGGACGAGAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp CTTCTGCAGAGTGGTCTGAGCATGCTGGGTCTTCTCCAGCCACCGTaGACGCTCTGTAGAACTGGGACAGTGCACAGTGAGGGCACTGGA +
Preference number: 5 (lower is better)
Translates to: LLQSGLSMLGLLQPP*TLCRTGTVHSEGTG
Trigger: TCCAGTGCCCTCACTGTGCACTGTCCCAGTTCTACAGAGCGTGCACGGTGGCTGGAGAAGACCCAGCATGCTCAGACCACTCTGCAGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp CCAAAGTCTCGTCTTCCTCCTCCGACCAGATTGGTGGGGCTCTCCTaGGTAGACTGCCTCCTCTTAGGATCCCTTCTGGCAACTCTGGGG +
Preference number: 5 (lower is better)
Translates to: PKSRLPPPTRLVGLS*VDCLLLGSLLATLG
Trigger: CCCCAGAGTTGCCAGAAGGGATCCTAAGAGGAGGCAGTCTACCCAGGAGAGCCCCACCAATCTGGTCGGAGGAGGAAGACGAGACTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTATGCGCTGGTGGGGCTaGATGAGCAAGTCACCCAGC +
Preference number: 5 (lower is better)
Translates to: SPGEVVASTLRETISLGGMRWWG*MSKSPS
Trigger: GCTGGGTGACTTGCTCATCAAGCCCCACCAGCGCAT...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp CCAAACAGGGTCTCAGCCGACACCTCAGTCAGCAGCCCCACCCGCTaGAAATTCAGCAGACCAGCTGCCAGGAGATCAGTCATGATCTTG +
Preference number: 5 (lower is better)
Translates to: PNRVSADTSVSSPTR*KFSRPAARRSVMIL
Trigger: CAAGATCATGACTGATCTCCTGGCAGCTGGTCTGCTGAATTTGCAGCGGGTGGGGCTGCTGACTGAGGTGTCGGCTGAGACCCTGTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp GGATCCAAAGGTTGGCCAGAGGTGCGAGTGTCTTCCAGGATGGGCTaGAGCACCTCCTCCCAAAATCTCCGGTGGGCTCTAATCAGGTTG +
Preference number: 5 (lower is better)
Translates to: GSKGWPEVRVSSRMG*STSSQNLRWALIRL
Trigger: CAACCTGATTAGAGCCCACCGGAGATTTTGGGAGGAGGTGCTGCAGCCCATCCTGGAAGACACTCGCACCTCTGGCCAACCTTTGGATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp TGGGTCTTCTCCAGCCACCGTGCACGCTCTGTAGAACTGGGACAGTaGACAGTGAGGGCACTGGAGACACACTGGAATTCTGTGAGGTGG +
Preference number: 5 (lower is better)
Translates to: WVFSSHRARSVELGQ*TVRALETHWNSVRW
Trigger: CCACCTCACAGAATTCCAGTGTGTCTCCAGTGCCCTCACTGTGCACTGTCCCAGTTCTACAGAGCGTGCACGGTGGCTGGAGAAGACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp ACTATCGCCTCCCTCTCCTATCTCCCAGTGTCTCCGGTCCTCTGGTaGCAGGCGGGGCATCCCAAACATGCTGAATGTGTGCAGCCTTAT +
Preference number: 5 (lower is better)
Translates to: TIASLSYLPVSPVLW*QAGHPKHAECVQPY
Trigger: ATAAGGCTGCACACATTCAGCATGTTTGGGATGCCCCGCCTGCCACCAGAGGACCGGAGACACTGGGAGATAGGAGAGGGAGGCGATAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp CAGTGCACAGTGAGGGCACTGGAGACACACTGGAATTCTGTGAGGTaGATCAACAGGAAGCTGTTGGGGTCTCGCAGTGGTCGGCACACG +
Preference number: 5 (lower is better)
Translates to: QCTVRALETHWNSVR*INRKLLGSRSGRHT
Trigger: CGTGTGCCGACCACTGCGAGACCCCAACAGCTTCCTGTTGATCCACCTCACAGAATTCCAGTGTGTCTCCAGTGCCCTCACTGTGCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp TTGGAATCAAGGTACCGTAGCCAGAGTCTGAGGCGTCATCCGGCATaGAGGGCGTGTCTTCATCTGTATCCTCAGTCACCACCAGGCGGG +
Preference number: 5 (lower is better)
Translates to: LESRYRSQSLRRHPA*RACLHLYPQSPPGG
Trigger: CCCGCCTGGTGGTGACTGAGGATACAGATGAAGACACGCCCTCCATGCCGGATGACGCCTCAGACTCTGGCTACGGTACCTTGATTCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp CAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCCTCCTCCGACCAGATaGGTGGGGCTCTCCTGGGTA +
Preference number: 5 (lower is better)
Translates to: QNVQFLTSRVLRGDAWVRPPPTR*VGLSWV
Trigger: TACCCAGGAGAGCCCCACCAATCTGGTCGGAGGAGG...CCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp TGGGCCACAGCCATCAAACTCTCCTGCTCTTCACCCTGTCGGACCTaGCCATTTATGTGTCGCAGGAAGGACTCCACAGCCTCGATCATG +
Preference number: 5 (lower is better)
Translates to: WATAIKLSCSSPCRT*PFMCRRKDSTASIM
Trigger: CATGATCGAGGCTGTGGAGTCCTTCCTGCGACACATAAATGGCCAGGTCCGACAGGGTGAAGAGCAGGAGAGTTTGATGGCTGTGGCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp GTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGCTTGGTTCTGTCCGCCTTGCGTaGAGGTTTGGTTACCAGGAG +
Preference number: 5 (lower is better)
Translates to: VQFLTSRVLRGDAWVRLGSVRLA*RFGYQE
Trigger: CTCCTGGTAACCAAACCTCAACGCAAGGCGGACAGA...ACCAAGCCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 90 bp AGAATCCTTCGGGGAGCTTGGAATCAAGGTACCGTAGCCAGAGTCTaGGGCGTCATCCGGCATGGAGGGCGTGTCTTCATCTGTATCCTC +
Preference number: 5 (lower is better)
Translates to: RILRGAWNQGTVARV*GVIRHGGRVFICIL
Trigger: GAGGATACAGATGAAGACACGCCCTCCATGCCGGATGACGCCTCAGACTCTGGCTACGGTACCTTGATTCCAAGCTCCCCGAAGGATTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp TCATCTCCTTGTGTTCCAGCACCAGCTCCTTCCAGGACTTTTCCATaGTCAGGGCACTATCGCCTCCCTCTCCTATCTCCCAGTGTCTCC +
Preference number: 5 (lower is better)
Translates to: SSPCVPAPAPSRTFP*SGHYRLPLLSPSVS
Trigger: GGAGACACTGGGAGATAGGAGAGGGAGGCGATAGTGCCCTGACCATGGAAAAGTCCTGGAAGGAGCTGGTGCTGGAACACAAGGAGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 90 bp AGCATGAGGGGAGGACGGATGACCTTGGCTCTGTCCGCCTTGCGTTaGGGTTTGGTTACCAGGAGCACATCGGAGAAGAGAAATAGGTAC +
Preference number: 5 (lower is better)
Translates to: SMRGGRMTLALSALR*GLVTRSTSEKRNRY
Trigger: GTACCTATTTCTCTTCTCCGATGTGCTCCTGGTAACCAAACCTCAACGCAAGGCGGACAGAGCCAAGGTCATCCGTCCTCCCCTCATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp GAGCTTTCTCAGGTAGATCAGCTCAGTGGTCAGGAGTTCCCACAGTaGTTCCTGCTGGTGGCAAAGCTGGCGGTTCATCTCCTTGTGTTC +
Preference number: 5 (lower is better)
Translates to: ELSQVDQLSGQEFPQ*FLLVAKLAVHLLVF
Trigger: GAACACAAGGAGATGAACCGCCAGCTTTGCCACCAGCAGGAAGCACTGTGGGAACTCCTGACCACTGAGCTGATCTACCTGAGAAAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 90 bp CACCTCAGTCAGCAGCCCCACCCGCTGCAAATTCAGCAGACCAGCTaGCAGGAGATCAGTCATGATCTTGAGCTTTCTCAGGTAGATCAG +
Preference number: 5 (lower is better)
Translates to: HLSQQPHPLQIQQTS*QEISHDLELSQVDQ
Trigger: CTGATCTACCTGAGAAAGCTCAAGATCATGACTGATCTCCTGGCAGCTGGTCTGCTGAATTTGCAGCGGGTGGGGCTGCTGACTGAGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp TGTGGAACAGTGGGTTCGTGTCTTGCTGCTCCCGCGCATAAGCCATaGTCTGCTTTACTCGAAGGCAGTACTGGACGTAAGGTTGGAACC +
Preference number: 5 (lower is better)
Translates to: CGTVGSCLAAPAHKP*SALLEGSTGRKVGT
Trigger: GGTTCCAACCTTACGTCCAGTACTGCCTTCGAGTAAAGCAGACCATGGCTTATGCGCGGGAGCAGCAAGACACGAACCCACTGTTCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 90 bp TCTGTAGAACTGGGACAGTGCACAGTGAGGGCACTGGAGACACACTaGAATTCTGTGAGGTGGATCAACAGGAAGCTGTTGGGGTCTCGC +
Preference number: 5 (lower is better)
Translates to: SVELGQCTVRALETH*NSVRWINRKLLGSR
Trigger: GCGAGACCCCAACAGCTTCCTGTTGATCCACCTCACAGAATTCCAGTGTGTCTCCAGTGCCCTCACTGTGCACTGTCCCAGTTCTACAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp AGTCCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTTGGGCTCTAATCAGGTaGGGGACATTTCCAAACAGG +
Preference number: 5 (lower is better)
Translates to: SPGEVVASTLRETISLGGWALIR*GTFPNR
Trigger: CCTGTTTGGAAATGTCCCCAACCTGATTAGAGCCCA...ACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGGACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp CAAAATGTTCAGTTCTTGACCTCCAGGGTCCTCAGAGGTGATGCCTGGGTCAGGTGTCTTCCGGAGCGCTaGTGTTTCTCACACCACTGC +
Preference number: 5 (lower is better)
Translates to: QNVQFLTSRVLRGDAWVRCLPER*CFSHHC
Trigger: GCAGTGGTGTGAGAAACACAAGCGCTCCGGAAGACA...CCTGACCCAGGCATCACCTCTGAGGACCCTGGAGGTCAAGAACTGAACATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp CCGGGGGAGGTGGTGGCCAGCACTCTTAGGGAGACAATTTCTCTAGGAGGTGTACAGCTCCCTCTTCTGTaGAATGTACTGCTCACCCTT +
Preference number: 5 (lower is better)
Translates to: PGEVVASTLRETISLGGVQLPLL*NVLLTL
Trigger: AAGGGTGAGCAGTACATTCAACAGAAGAGGGAGCTG...TACACCTCCTAGAGAAATTGTCTCCCTAAGAGTGCTGGCCACCACCTCCCCCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 90 bp AAGGTTGGAACCGCTGGCCAAATGTCAGGAAGCCATTTTGTAAGCTaGCAGGATCCAAAGGTTGGCCAGAGGTGCGAGTGTCTTCCAGGA +
Preference number: 5 (lower is better)
Translates to: KVGTAGQMSGSHFVS*QDPKVGQRCECLPG
Trigger: TCCTGGAAGACACTCGCACCTCTGGCCAACCTTTGGATCCTGTCAGCTTACAAAATGGCTTCCTGACATTTGGCCAGCGGTTCCAACCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS-3UTR CAA 90 bp AGGGCTCAGGGGTTCGTCTGTGAGACAAAATGTTCAGTTCTTGACCTCCAGGGTGTACTGGACGTAAGGTaGGAACCGCTGGCCAAATGT +
Preference number: 5 (lower is better)
Translates to: RAQGFVCETKCSVLDLQGVLDVR*EPLAKC
Trigger: ACATTTGGCCAGCGGTTCCAACCTTACGTCCAGTAC...ACCCTGGAGGTCAAGAACTGAACATTTTGTCTCACAGACGAACCCCTGAGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp GCGAAGGTGTGGAGGGCCTGGTGCTGGGGGACTCCGTaGCCTGGTTGCGATAGAGGGCCAGCAGCTCCCTCT +
Preference number: 6 (lower is better)
Translates to: AKVWRAWCWGTP*PGCDRGPAAPS
Trigger: AGAGGGAGCTGCTGGCCCTCTATCGCAACCAGGGCACGGAGTCCCCCAGCACCAGGCCCTCCACACCTTCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp TGGGCTCGGGGCTCGGGGCTTCTCTTGCGCACAGCCTaGAGCAGCAGTGGGTATTTGGTGATGCGCTGGTGG +
Preference number: 6 (lower is better)
Translates to: WARGSGLLLRTA*SSSGYLVMRWW
Trigger: CCACCAGCGCATCACCAAATACCCACTGCTGCTGCAGGCTGTGCGCAAGAGAAGCCCCGAGCCCCGAGCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GACTCCACAGCCTCGATCATGGCATTCAGGGCCTCTTaGGCTCGGGGCTCGGGGCTTCTCTTGCGCACAGCC +
Preference number: 6 (lower is better)
Translates to: DSTASIMAFRAS*ARGSGLLLRTA
Trigger: GGCTGTGCGCAAGAGAAGCCCCGAGCCCCGAGCCCAAGAGGCCCTGAATGCCATGATCGAGGCTGTGGAGTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp GGACTCCACAGCCTCGATCATGGCATTCAGGGCCTCTaGGGCTCGGGGCTCGGGGCTTCTCTTGCGCACAGC +
Preference number: 6 (lower is better)
Translates to: GLHSLDHGIQGL*GSGLGASLAHS
Trigger: GCTGTGCGCAAGAGAAGCCCCGAGCCCCGAGCCCAAGAGGCCCTGAATGCCATGATCGAGGCTGTGGAGTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp TCGCAGGAAGGACTCCACAGCCTCGATCATGGCATTCAGGGCCTCTaGGGCTCGGGGCTCGGGGCTTCTCTTGCGCACAGCCTGCAGCAG +
Preference number: 6 (lower is better)
Translates to: SQEGLHSLDHGIQGL*GSGLGASLAHSLQQ
Trigger: CTGCTGCAGGCTGTGCGCAAGAGAAGCCCCGAGCCCCGAGCCCAAGAGGCCCTGAATGCCATGATCGAGGCTGTGGAGTCCTTCCTGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp CCAGAGGAGACATGCCTCGGGTCTGGCCAGAGCCCTTaGCAAAGGGGACATAGTGCTGAAGGCGTCGGCGAC +
Preference number: 6 (lower is better)
Translates to: PEETCLGSGQSP*QRGHSAEGVGD
Trigger: GTCGCCGACGCCTTCAGCACTATGTCCCCTTTGCCAAGGGCTCTGGCCAGACCCGAGGCATGTCTCCTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp GGGCTTGCCATTCCCTGGTTCCGGTTCCGAGGCTCCATCGATCCTTaGGTTGGCCAGCTCCTCCCTGATCTCCCTGAGCATGTCCTCCCG +
Preference number: 6 (lower is better)
Translates to: GLAIPWFRFRGSIDP*VGQLLPDLPEHVLP
Trigger: CGGGAGGACATGCTCAGGGAGATCAGGGAGGAGCTGGCCAACCAAAGGATCGATGGAGCCTCGGAACCGGAACCAGGGAATGGCAAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp TCTCTGGGTCTGGTTCCCGAAGCACCAGAGGAGACATaGCTCGGGTCTGGCCAGAGCCCTTGGCAAAGGGGA +
Preference number: 6 (lower is better)
Translates to: SLGLVPEAPEET*LGSGQSPWQRG
Trigger: TCCCCTTTGCCAAGGGCTCTGGCCAGACCCGAGGCATGTCTCCTCTGGTGCTTCGGGAACCAGACCCAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp GGTTGGCCAGAGGTGCGAGTGTCTTCCAGGATGGGCTaGAGCACCTCCTCCCAAAATCTCCGGTGGGCTCTA +
Preference number: 6 (lower is better)
Translates to: GWPEVRVSSRMG*STSSQNLRWAL
Trigger: TAGAGCCCACCGGAGATTTTGGGAGGAGGTGCTGCAGCCCATCCTGGAAGACACTCGCACCTCTGGCCAACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp CCCTCCTTCACCCGCACAGGTCCTTCCAGCAGCAGCTaGCTGGTATACTCAGGGGCAACCCCTAGTACAGGA +
Preference number: 6 (lower is better)
Translates to: PSFTRTGPSSSS*LVYSGATPSTG
Trigger: TCCTGTACTAGGGGTTGCCCCTGAGTATACCAGGCAGCTGCTGCTGGAAGGACCTGTGCGGGTGAAGGAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GCCTCCCTCTCCTATCTCCCAGTGTCTCCGGTCCTCTaGTGGCAGGCGGGGCATCCCAAACATGCTGAATGT +
Preference number: 6 (lower is better)
Translates to: ASLSYLPVSPVL*WQAGHPKHAEC
Trigger: ACATTCAGCATGTTTGGGATGCCCCGCCTGCCACCAGAGGACCGGAGACACTGGGAGATAGGAGAGGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp CCAAAGGTTGGCCAGAGGTGCGAGTGTCTTCCAGGATaGGCTGCAGCACCTCCTCCCAAAATCTCCGGTGGG +
Preference number: 6 (lower is better)
Translates to: PKVGQRCECLPG*AAAPPPKISGG
Trigger: CCCACCGGAGATTTTGGGAGGAGGTGCTGCAGCCCATCCTGGAAGACACTCGCACCTCTGGCCAACCTTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 72 bp CGGGGAGCTTGGAATCAAGGTACCGTAGCCAGAGTCTaGGGCGTCATCCGGCATGGAGGGCGTGTCTTCATC +
Preference number: 6 (lower is better)
Translates to: RGAWNQGTVARV*GVIRHGGRVFI
Trigger: GATGAAGACACGCCCTCCATGCCGGATGACGCCTCAGACTCTGGCTACGGTACCTTGATTCCAAGCTCCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp CCTCGCTGGAGGGCTCTAGCACCTCATAGGGTCCTATaGGCTGGGCCACAGCCATCAAACTCTCCTGCTCTT +
Preference number: 6 (lower is better)
Translates to: PRWRALAPHRVL*AGPQPSNSPAL
Trigger: AAGAGCAGGAGAGTTTGATGGCTGTGGCCCAGCGCATAGGACCCTATGAGGTGCTAGAGCCCTCCAGCGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp TCCCTCTCCTATCTCCCAGTGTCTCCGGTCCTCTGGTaGCAGGCGGGGCATCCCAAACATGCTGAATGTGTG +
Preference number: 6 (lower is better)
Translates to: SLSYLPVSPVLW*QAGHPKHAECV
Trigger: CACACATTCAGCATGTTTGGGATGCCCCGCCTGCCACCAGAGGACCGGAGACACTGGGAGATAGGAGAGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp CCTTCACCCGCACAGGTCCTTCCAGCAGCAGCTGCCTaGTATACTCAGGGGCAACCCCTAGTACAGGAGTCA +
Preference number: 6 (lower is better)
Translates to: PSPAQVLPAAAA*YTQGQPLVQES
Trigger: TGACTCCTGTACTAGGGGTTGCCCCTGAGTATACCAGGCAGCTGCTGCTGGAAGGACCTGTGCGGGTGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GAGGTGGATCAACAGGAAGCTGTTGGGGTCTCGCAGTaGTCGGCACACGAGTTTCTCCAGCATGAGGGGAGG +
Preference number: 6 (lower is better)
Translates to: EVDQQEAVGVSQ*SAHEFLQHEGR
Trigger: CCTCCCCTCATGCTGGAGAAACTCGTGTGCCGACCACTGCGAGACCCCAACAGCTTCCTGTTGATCCACCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp TTCCCTGGTTCCGGTTCCGAGGCTCCATCGATCCTTTaGTTGGCCAGCTCCTCCCTGATCTCCCTGAGCATG +
Preference number: 6 (lower is better)
Translates to: FPGSGSEAPSIL*LASSSLISLSM
Trigger: CATGCTCAGGGAGATCAGGGAGGAGCTGGCCAACCAAAGGATCGATGGAGCCTCGGAACCGGAACCAGGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp AGCTGTATGATGTGGGGGACCCTCATTCTCTGCAGCTaGGCTAGAGTCAGCCTCCGGGGCTTGCCATTCCCT +
Preference number: 6 (lower is better)
Translates to: SCMMWGTLILCS*ARVSLRGLPFP
Trigger: AGGGAATGGCAAGCCCCGGAGGCTGACTCTAGCCCAGCTGCAGAGAATGAGGGTCCCCCACATCATACAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp GCCCCCGTAAGTCTCAATTCGGGAAGCTACCAGGCCTaGGAGGGGGCCCTCATTTGGAGGACCAAAGGCTTG +
Preference number: 6 (lower is better)
Translates to: APVSLNSGSYQA*EGALIWRTKGL
Trigger: CAAGCCTTTGGTCCTCCAAATGAGGGCCCCCTCCAAGGCCTGGTAGCTTCCCGAATTGAGACTTACGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp GGCTGCAGCACCTCCTCCCAAAATCTCCGGTGGGCTCTAATCAGGTaGGGGACATTTCCAAACAGGGTCTCAGCCGACACCTCAGTCAGC +
Preference number: 6 (lower is better)
Translates to: GCSTSSQNLRWALIR*GTFPNRVSADTSVS
Trigger: GCTGACTGAGGTGTCGGCTGAGACCCTGTTTGGAAATGTCCCCAACCTGATTAGAGCCCACCGGAGATTTTGGGAGGAGGTGCTGCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp CTCCGTGCCCTGGTTGCGATAGAGGGCCAGCAGCTCCCTCTTCTGTaGAATGTACTGCTCACCCTTCAGCTTCTGCAGAGTGGTCTGAGC +
Preference number: 6 (lower is better)
Translates to: LRALVAIEGQQLPLL*NVLLTLQLLQSGLS
Trigger: GCTCAGACCACTCTGCAGAAGCTGAAGGGTGAGCAGTACATTCAACAGAAGAGGGAGCTGCTGGCCCTCTATCGCAACCAGGGCACGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 72 bp GGTCCTCTGGTGGCAGGCGGGGCATCCCAAACATGCTaGATGTGTGCAGCCTTATTTCTAGCTCATGGGCCC +
Preference number: 6 (lower is better)
Translates to: GPLVAGGASQTC*MCAALFLAHGP
Trigger: GGGCCCATGAGCTAGAAATAAGGCTGCACACATTCAGCATGTTTGGGATGCCCCGCCTGCCACCAGAGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 72 bp ATGTACTGCTCACCCTTCAGCTTCTGCAGAGTGGTCTaGGCATGCTGGGTCTTCTCCAGCCACCGTGCACGC +
Preference number: 6 (lower is better)
Translates to: MYCSPFSFCRVV*ACWVFSSHRAR
Trigger: GCGTGCACGGTGGCTGGAGAAGACCCAGCATGCTCAGACCACTCTGCAGAAGCTGAAGGGTGAGCAGTACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 72 bp CTTCATCTGTATCCTCAGTCACCACCAGGCGGGGGATaGTGGCGAACTCTAAAGTCCTCCCCTCGGCACTGC +
Preference number: 6 (lower is better)
Translates to: LHLYPQSPPGGG*WRTLKSSPRHC
Trigger: GCAGTGCCGAGGGGAGGACTTTAGAGTTCGCCATCATCCCCCGCCTGGTGGTGACTGAGGATACAGATGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp AGTGGTCTGAGCATGCTGGGTCTTCTCCAGCCACCGTaGACGCTCTGTAGAACTGGGACAGTGCACAGTGAG +
Preference number: 6 (lower is better)
Translates to: SGLSMLGLLQPP*TLCRTGTVHSE
Trigger: CTCACTGTGCACTGTCCCAGTTCTACAGAGCGTGCACGGTGGCTGGAGAAGACCCAGCATGCTCAGACCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp TGGGCCGACCCCAAAATAGCTTCCATGCCTCTTCTCTaGGTCTGGTTCCCGAAGCACCAGAGGAGACATGCC +
Preference number: 6 (lower is better)
Translates to: WADPKIASMPLL*VWFPKHQRRHA
Trigger: GGCATGTCTCCTCTGGTGCTTCGGGAACCAGACCCAGAGAAGAGGCATGGAAGCTATTTTGGGGTCGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp AGGAGTTCCCACAGTGCTTCCTGCTGGTGGCAAAGCTaGCGGTTCATCTCCTTGTGTTCCAGCACCAGCTCC +
Preference number: 6 (lower is better)
Translates to: RSSHSASCWWQS*RFISLCSSTSS
Trigger: GGAGCTGGTGCTGGAACACAAGGAGATGAACCGCCAGCTTTGCCACCAGCAGGAAGCACTGTGGGAACTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp GGGAGGACGGATGACCTTGGCTCTGTCCGCCTTGCGTaGAGGTTTGGTTACCAGGAGCACATCGGAGAAGAG +
Preference number: 6 (lower is better)
Translates to: GRTDDLGSVRLA*RFGYQEHIGEE
Trigger: CTCTTCTCCGATGTGCTCCTGGTAACCAAACCTCAACGCAAGGCGGACAGAGCCAAGGTCATCCGTCCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp ATTCCCTGGTTCCGGTTCCGAGGCTCCATCGATCCTTaGGTTGGCCAGCTCCTCCCTGATCTCCCTGAGCAT +
Preference number: 6 (lower is better)
Translates to: IPWFRFRGSIDP*VGQLLPDLPEH
Trigger: ATGCTCAGGGAGATCAGGGAGGAGCTGGCCAACCAAAGGATCGATGGAGCCTCGGAACCGGAACCAGGGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp TGGGGCTTGATGAGCAAGTCACCCAGCGTCTGTCTTCCGGAGCGCTaGTGTTTCTCACACCACTGCACGAAGGTGTGGAACAGTGGGTTC +
Preference number: 6 (lower is better)
Translates to: WGLMSKSPSVCLPER*CFSHHCTKVWNSGF
Trigger: GAACCCACTGTTCCACACCTTCGTGCAGTGGTGTGAGAAACACAAGCGCTCCGGAAGACAGACGCTGGGTGACTTGCTCATCAAGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp CCACATTCCCTGATGCCAAAGTCTCGTCTTCCTCCTCCGACCAGATaGGTGGGGCTCTCCTGGGTAGACTGCCTCCTCTTAGGATCCCTT +
Preference number: 6 (lower is better)
Translates to: PHSLMPKSRLPPPTR*VGLSWVDCLLLGSL
Trigger: AAGGGATCCTAAGAGGAGGCAGTCTACCCAGGAGAGCCCCACCAATCTGGTCGGAGGAGGAAGACGAGACTTTGGCATCAGGGAATGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 72 bp GGAGGACGGATGACCTTGGCTCTGTCCGCCTTGCGTTaGGGTTTGGTTACCAGGAGCACATCGGAGAAGAGA +
Preference number: 6 (lower is better)
Translates to: GGRMTLALSALR*GLVTRSTSEKR
Trigger: TCTCTTCTCCGATGTGCTCCTGGTAACCAAACCTCAACGCAAGGCGGACAGAGCCAAGGTCATCCGTCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp GGTGGCAGGCGGGGCATCCCAAACATGCTGAATGTGTaGAGCCTTATTTCTAGCTCATGGGCCCTGGTGACT +
Preference number: 6 (lower is better)
Translates to: GGRRGIPNMLNV*SLISSSWALVT
Trigger: AGTCACCAGGGCCCATGAGCTAGAAATAAGGCTGCACACATTCAGCATGTTTGGGATGCCCCGCCTGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GACCCCAAAATAGCTTCCATGCCTCTTCTCTGGGTCTaGTTCCCGAAGCACCAGAGGAGACATGCCTCGGGT +
Preference number: 6 (lower is better)
Translates to: DPKIASMPLLWV*FPKHQRRHASG
Trigger: ACCCGAGGCATGTCTCCTCTGGTGCTTCGGGAACCAGACCCAGAGAAGAGGCATGGAAGCTATTTTGGGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GCCATCAAACTCTCCTGCTCTTCACCCTGTCGGACCTaGCCATTTATGTGTCGCAGGAAGGACTCCACAGCC +
Preference number: 6 (lower is better)
Translates to: AIKLSCSSPCRT*PFMCRRKDSTA
Trigger: GGCTGTGGAGTCCTTCCTGCGACACATAAATGGCCAGGTCCGACAGGGTGAAGAGCAGGAGAGTTTGATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp AGGTACCGTAGCCAGAGTCTGAGGCGTCATCCGGCATaGAGGGCGTGTCTTCATCTGTATCCTCAGTCACCA +
Preference number: 6 (lower is better)
Translates to: RYRSQSLRRHPA*RACLHLYPQSP
Trigger: TGGTGACTGAGGATACAGATGAAGACACGCCCTCCATGCCGGATGACGCCTCAGACTCTGGCTACGGTACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp CCACTGCACGAAGGTGTGGAACAGTGGGTTCGTGTCTaGCTGCTCCCGCGCATAAGCCATGGTCTGCTTTAC +
Preference number: 6 (lower is better)
Translates to: PLHEGVEQWVRV*LLPRISHGLLY
Trigger: GTAAAGCAGACCATGGCTTATGCGCGGGAGCAGCAAGACACGAACCCACTGTTCCACACCTTCGTGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp CTGATGCCAAAGTCTCGTCTTCCTCCTCCGACCAGATaGGTGGGGCTCTCCTGGGTAGACTGCCTCCTCTTA +
Preference number: 6 (lower is better)
Translates to: LMPKSRLPPPTR*VGLSWVDCLLL
Trigger: TAAGAGGAGGCAGTCTACCCAGGAGAGCCCCACCAATCTGGTCGGAGGAGGAAGACGAGACTTTGGCATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp ATCAGCTCAGTGGTCAGGAGTTCCCACAGTGCTTCCTaGTGGTGGCAAAGCTGGCGGTTCATCTCCTTGTGT +
Preference number: 6 (lower is better)
Translates to: ISSVVRSSHSAS*WWQSWRFISLC
Trigger: ACACAAGGAGATGAACCGCCAGCTTTGCCACCAGCAGGAAGCACTGTGGGAACTCCTGACCACTGAGCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp CAGCAGCCCCACCCGCTGCAAATTCAGCAGACCAGCTaGCAGGAGATCAGTCATGATCTTGAGCTTTCTCAG +
Preference number: 6 (lower is better)
Translates to: QQPHPLQIQQTS*QEISHDLELSQ
Trigger: CTGAGAAAGCTCAAGATCATGACTGATCTCCTGGCAGCTGGTCTGCTGAATTTGCAGCGGGTGGGGCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS GCA 72 bp GTCTGTCTTCCGGAGCGCTTGTGTTTCTCACACCACTaGACGAAGGTGTGGAACAGTGGGTTCGTGTCTTGC +
Preference number: 6 (lower is better)
Translates to: VCLPERLCFSHH*TKVWNSGFVSC
Trigger: GCAAGACACGAACCCACTGTTCCACACCTTCGTGCAGTGGTGTGAGAAACACAAGCGCTCCGGAAGACAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp AGGATGGGCTGCAGCACCTCCTCCCAAAATCTCCGGTaGGCTCTAATCAGGTTGGGGACATTTCCAAACAGG +
Preference number: 6 (lower is better)
Translates to: RMGCSTSSQNLR*ALIRLGTFPNR
Trigger: CCTGTTTGGAAATGTCCCCAACCTGATTAGAGCCCACCGGAGATTTTGGGAGGAGGTGCTGCAGCCCATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GTGGGTTCGTGTCTTGCTGCTCCCGCGCATAAGCCATaGTCTGCTTTACTCGAAGGCAGTACTGGACGTAAG +
Preference number: 6 (lower is better)
Translates to: VGSCLAAPAHKP*SALLEGSTGRK
Trigger: CTTACGTCCAGTACTGCCTTCGAGTAAAGCAGACCATGGCTTATGCGCGGGAGCAGCAAGACACGAACCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GTGTTTCTCACACCACTGCACGAAGGTGTGGAACAGTaGGTTCGTGTCTTGCTGCTCCCGCGCATAAGCCAT +
Preference number: 6 (lower is better)
Translates to: VFLTPLHEGVEQ*VRVLLLPRISH
Trigger: ATGGCTTATGCGCGGGAGCAGCAAGACACGAACCCACTGTTCCACACCTTCGTGCAGTGGTGTGAGAAACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp GTTGAATGTACTGCTCACCCTTCAGCTTCTGCAGAGTaGTCTGAGCATGCTGGGTCTTCTCCAGCCACCGTG +
Preference number: 6 (lower is better)
Translates to: VECTAHPSASAE*SEHAGSSPATV
Trigger: CACGGTGGCTGGAGAAGACCCAGCATGCTCAGACCACTCTGCAGAAGCTGAAGGGTGAGCAGTACATTCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp ACCTCCTCCCAAAATCTCCGGTGGGCTCTAATCAGGTaGGGGACATTTCCAAACAGGGTCTCAGCCGACACC +
Preference number: 6 (lower is better)
Translates to: TSSQNLRWALIR*GTFPNRVSADT
Trigger: GGTGTCGGCTGAGACCCTGTTTGGAAATGTCCCCAACCTGATTAGAGCCCACCGGAGATTTTGGGAGGAGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 72 bp ATGAGCAAGTCACCCAGCGTCTGTCTTCCGGAGCGCTaGTGTTTCTCACACCACTGCACGAAGGTGTGGAAC +
Preference number: 6 (lower is better)
Translates to: MSKSPSVCLPER*CFSHHCTKVWN
Trigger: GTTCCACACCTTCGTGCAGTGGTGTGAGAAACACAAGCGCTCCGGAAGACAGACGCTGGGTGACTTGCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CAA 90 bp TTTCTCACACCACTGCACGAAGGTGTGGAACAGTGGGTTCGTGTCTaGCTGCTCCCGCGCATAAGCCATGGTCTGCTTTACTCGAAGGCA +
Preference number: 6 (lower is better)
Translates to: FLTPLHEGVEQWVRV*LLPRISHGLLYSKA
Trigger: TGCCTTCGAGTAAAGCAGACCATGGCTTATGCGCGGGAGCAGCAAGACACGAACCCACTGTTCCACACCTTCGTGCAGTGGTGTGAGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp AGGAAGCCATTTTGTAAGCTGACAGGATCCAAAGGTTaGCCAGAGGTGCGAGTGTCTTCCAGGATGGGCTGC +
Preference number: 6 (lower is better)
Translates to: RKPFCKLTGSKG*PEVRVSSRMGC
Trigger: GCAGCCCATCCTGGAAGACACTCGCACCTCTGGCCAACCTTTGGATCCTGTCAGCTTACAAAATGGCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS CCA 72 bp CTGGGACAGTGCACAGTGAGGGCACTGGAGACACACTaGAATTCTGTGAGGTGGATCAACAGGAAGCTGTTG +
Preference number: 6 (lower is better)
Translates to: LGQCTVRALETH*NSVRWINRKLL
Trigger: CAACAGCTTCCTGTTGATCCACCTCACAGAATTCCAGTGTGTCTCCAGTGCCCTCACTGTGCACTGTCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7
CDS TCA 72 bp ACCGCTGGCCAAATGTCAGGAAGCCATTTTGTAAGCTaGCAGGATCCAAAGGTTGGCCAGAGGTGCGAGTGT +
Preference number: 6 (lower is better)
Translates to: TAGQMSGSHFVS*QDPKVGQRCEC
Trigger: ACACTCGCACCTCTGGCCAACCTTTGGATCCTGTCAGCTTACAAAATGGCTTCCTGACATTTGGCCAGCGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042647.7