Pregenerated sensors for PLEKHF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049969Ensembl transcript IDs: ENSMUST00000054776.4, ENSMUST00000137891.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTAAGCATGCCAGGGGCCAGAATGTGCCTGGCACGTCCAGTGCTATaGAGTAAGCAGGCCTACAGCCTAATGGCTGCCTCCAAACATAAA | + |
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Preference number: 1 (lower is better) Translates to: LSMPGARMCLARPVL*SKQAYSLMAASKHK Trigger: TTTATGTTTGGAGGCAGCCATTAGGCTGTAGGCCTGCTTACTGCATAGCACTGGACGTGCCAGGCACATTCTGGCCCCTGGCATGCTTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR CCA 90 bp | TTGTCAGGTGGTAGTGGTGCCTGGGGAGGCAAAGGCAGAGGCAGATaGATTTTTGAGAATTCAAGGCCAGCCTGGTCAACAAATCGAGTT | + |
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Preference number: 1 (lower is better) Translates to: LSGGSGAWGGKGRGR*IFENSRPAWSTNRV Trigger: AACTCGATTTGTTGACCAGGCTGGCCTTGAATTCTCAAAAATCCATCTGCCTCTGCCTTTGCCTCCCCAGGCACCACTACCACCTGACAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR CCA 90 bp | AAACCATGCTCTGTCACTGGTGTCGTAACCTTGACATCGACTGCTTaGGGAAAAGCCAGATACCAAGCACATCATACTCTTGTTCCCATC | + |
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Preference number: 1 (lower is better) Translates to: KPCSVTGVVTLTSTA*GKARYQAHHTLVPI Trigger: GATGGGAACAAGAGTATGATGTGCTTGGTATCTGGCTTTTCCCCAAGCAGTCGATGTCAAGGTTACGACACCAGTGACAGAGCATGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR TCA 90 bp | CATCAGCATTTCTCTGGTTTTTATGGTCCTTTCAAACATGCTTACTaGCTGCATGTATATGCTGCTCTGAGACAAACACAAATCCATCCA | + |
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Preference number: 1 (lower is better) Translates to: HQHFSGFYGPFKHAY*LHVYAALRQTQIHP Trigger: TGGATGGATTTGTGTTTGTCTCAGAGCAGCATATACATGCAGTCAGTAAGCATGTTTGAAAGGACCATAAAAACCAGAGAAATGCTGATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR CCA 90 bp | AAGGCCAGCCTGGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGACCATGCTCTGTCACTaGTGTCGTAACCTTGACATC | + |
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Preference number: 2 (lower is better) Translates to: KASLVNKSSSRISKATQRTMLCH*CRNLDI Trigger: GATGTCAAGGTTACGACACCAGTGACAGAGCATGGT...CCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACCAGGCTGGCCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR CAA 90 bp | CAAACCATGCTCTGTCACTGGTGTCGTAACCTTGACATCGACTGCTaGGGGAAAAGCCAGATACCAAGCACATCATACTCTTGTTCCCAT | + |
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Preference number: 2 (lower is better) Translates to: QTMLCHWCRNLDIDC*GKSQIPSTSYSCSH Trigger: ATGGGAACAAGAGTATGATGTGCTTGGTATCTGGCTTTTCCCCAAGCAGTCGATGTCAAGGTTACGACACCAGTGACAGAGCATGGTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR GCA 90 bp | TTTCATTCACAAGTTACTGACTCAAACCCTAGGACATCTGCAGAATTATGCAGGGCCTGGCACGTCCAGTaGTATGCAGTAAGCAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: FHSQVTDSNPRTSAELCRAWHVQ*YAVSRP Trigger: AGGCCTGCTTACTGCATAGCACTGGACGTGCCAGGC...CCTGCATAATTCTGCAGATGTCCTAGGGTTTGAGTCAGTAACTTGTGAATGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR TCA 90 bp | AAGCTACACAGAGGAACCCTGTTGGAAAATATAAGGGTTTCCTCAGATTTTTCCGAGCGCCCCCAAAGCTaGCTCTCAGGCAGTCAATTA | + |
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Preference number: 2 (lower is better) Translates to: KLHRGTLLENIRVSSDFSERPQS*LSGSQL Trigger: TAATTGACTGCCTGAGAGTCAGCTTTGGGGGCGCTC...GGAAAAATCTGAGGAAACCCTTATATTTTCCAACAGGGTTCCTCTGTGTAGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR TCA 90 bp | GGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGAACCCTGTTGGGGCACCACTTGGTATTaGGAAAAGAGAATAAAGGAT | + |
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Preference number: 2 (lower is better) Translates to: GQQIEFQDKQSYTEEPCWGTTWY*EKRIKD Trigger: ATCCTTTATTCTCTTTTCTCAATACCAAGTGGTGCC...CCAACAGGGTTCCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTATACTAGTGATGAGTTTCAAATCGAATCCCGAACAGTGGCAACGGGCTTTGACATCGACTGCTTaGGGAAAAGCCAGATACCAA | + |
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Preference number: 2 (lower is better) Translates to: TSILVMSFKSNPEQWQRALTSTA*GKARYQ Trigger: TTGGTATCTGGCTTTTCCCCAAGCAGTCGATGTCAA...AGCCCGTTGCCACTGTTCGGGATTCGATTTGAAACTCATCACTAGTATAGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR GCA 90 bp | AACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGAACCCTGTTGGAAAACCTATCGGATGTATCTaGAAGTTTGTCCCTGTGAGA | + |
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Preference number: 2 (lower is better) Translates to: NKSSSRISKATQRNPVGKPIGCI*KFVPVR Trigger: TCTCACAGGGACAAACTTGCAGATACATCCGATAGG...TTTTCCAACAGGGTTCCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR CAA 90 bp | TCAACTGAGGTCGACAATGCAAATGTTATCTCAGGACATTTCCCCTaGGTTTCTGAACTTCCAAGTTCCCATCAGCATTTCTCTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: STEVDNANVISGHFP*VSELPSSHQHFSGF Trigger: AAAACCAGAGAAATGCTGATGGGAACTTGGAAGTTCAGAAACCAAGGGGAAATGTCCTGAGATAACATTTGCATTGTCGACCTCAGTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR GCA 72 bp | CCAGGGGCCAGAATGTGCCTGGCACGTCCAGTGCTATaGAGTAAGCAGGCCTACAGCCTAATGGCTGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: PGARMCLARPVL*SKQAYSLMAAS Trigger: GGAGGCAGCCATTAGGCTGTAGGCCTGCTTACTGCATAGCACTGGACGTGCCAGGCACATTCTGGCCCCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR CAA 90 bp | AAGGCCAGCCTGGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGCTTGACATCGACTGCTaGGGGAAAAGCCAGATACCA | + |
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Preference number: 3 (lower is better) Translates to: KASLVNKSSSRISKATQRLDIDC*GKSQIP Trigger: TGGTATCTGGCTTTTCCCCAAGCAGTCGATGTCAAG...CCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACCAGGCTGGCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR CAA 90 bp | CCTAGTTACTTAAGCATGCCAGGGGCCAGAATGTGCCTGGCACGTCCAGTGCTAACAGTAAGGCACCACTaGGTATTGAGAAAAGAGAAT | + |
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Preference number: 3 (lower is better) Translates to: PSYLSMPGARMCLARPVLTVRHH*VLRKEN Trigger: ATTCTCTTTTCTCAATACCAAGTGGTGCCTTACTGT...TAGCACTGGACGTGCCAGGCACATTCTGGCCCCTGGCATGCTTAAGTAACTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR CCA 72 bp | TCTGTCACTGGTGTCGTAACCTTGACATCGACTGCTTaGGGAAAAGCCAGATACCAAGCACATCATACTCTT | + |
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Preference number: 3 (lower is better) Translates to: SVTGVVTLTSTA*GKARYQAHHTL Trigger: AAGAGTATGATGTGCTTGGTATCTGGCTTTTCCCCAAGCAGTCGATGTCAAGGTTACGACACCAGTGACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR CAA 90 bp | GGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGAACCCTGTTGGAAGCACATCATACTCTaGTTCCCATCATTCTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: GQQIEFQDKQSYTEEPCWKHIIL*FPSFCA Trigger: AGCACAGAATGATGGGAACAAGAGTATGATGTGCTT...CCAACAGGGTTCCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR-3UTR CAA 90 bp | CAACTGAGGTCGACAATGCAAATGTTATCTCAGGACATTTCCCCTTGGTTTCTGAGGCACCACTTGGTATaGAGAAAAGAGAATAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: QLRSTMQMLSQDISPWFLRHHLV*RKENKG Trigger: TCCTTTATTCTCTTTTCTCAATACCAAGTGGTGCCT...CAGAAACCAAGGGGAAATGTCCTGAGATAACATTTGCATTGTCGACCTCAGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR GCA 72 bp | TCAGCATTTCTCTGGTTTTTATGGTCCTTTCAAACATaGTTACTGACTGCATGTATATGCTGCTCTGAGACA | + |
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Preference number: 3 (lower is better) Translates to: SAFLWFLWSFQT*LLTACICCSET Trigger: TGTCTCAGAGCAGCATATACATGCAGTCAGTAAGCATGTTTGAAAGGACCATAAAAACCAGAGAAATGCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| 3UTR TCA 72 bp | TTCTCTGGTTTTTATGGTCCTTTCAAACATGCTTACTaGCTGCATGTATATGCTGCTCTGAGACAAACACAA | + |
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Preference number: 3 (lower is better) Translates to: FSGFYGPFKHAY*LHVYAALRQTQ Trigger: TTGTGTTTGTCTCAGAGCAGCATATACATGCAGTCAGTAAGCATGTTTGAAAGGACCATAAAAACCAGAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | GGGAGCAGAAAGCATGGGGCTGCTTTCCATAGGATACAGAGAGGCACAGAGGTTCCACATTTGCGGCAATaGTGCCGCCGATTGACTGGT | + |
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Preference number: 4 (lower is better) Translates to: GSRKHGAAFHRIQRGTEVPHLRQ*CRRLTG Trigger: ACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGG...AACCTCTGTGCCTCTCTGTATCCTATGGAAAGCAGCCCCATGCTTTCTGCTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR TCA 90 bp | ATCGACTGCTTGGGGAAAAGCCAGATACCAAGCACATCATACTCTTGTTCCCATTCTGATCTAGTCGGCTaGCACGCGGCCATGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: IDCLGKSQIPSTSYSCSHSDLVG*HAAMSP Trigger: GGGGGACATGGCCGCGTGTCAGCCGACTAGATCAGA...ATGGGAACAAGAGTATGATGTGCTTGGTATCTGGCTTTTCCCCAAGCAGTCGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR GCA 90 bp | AAGGCCAGCCTGGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGACCCAGACAGCAGCATaGTCGTTGCTGGGCGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: KASLVNKSSSRISKATQRTQTAA*SLLGVF Trigger: GAAGACGCCCAGCAACGAGCATGCTGCTGTCTGGGT...CCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACCAGGCTGGCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | TTACTTAAGCATGCCAGGGGCCAGAATGTGCCTGGCACGTCCAGTGCTATGCAGACTTCTCCGTGGCAGTaGCAGCATAAACTGCAAACG | + |
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Preference number: 4 (lower is better) Translates to: LLKHARGQNVPGTSSAMQTSPWQ*QHKLQT Trigger: CGTTTGCAGTTTATGCTGCCACTGCCACGGAGAAGT...CTGCATAGCACTGGACGTGCCAGGCACATTCTGGCCCCTGGCATGCTTAAGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR TCA 90 bp | GCAGAAAGCATGGGGCTGCTTTCCATAGGATACAGAGAGGCACAGAGGTTAAGAGTGATTCATCCACTCTaGCTTCTCCGTGGCAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: AESMGLLSIGYREAQRLRVIHPL*LLRGSG Trigger: GCCACTGCCACGGAGAAGTCAGAGTGGATGAATCAC...TCTTAACCTCTGTGCCTCTCTGTATCCTATGGAAAGCAGCCCCATGCTTTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR GCA 90 bp | AAGGCCAGCCTGGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGCAACAAAGCCACATTTaGGGCAATGGTGCCGCCGAT | + |
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Preference number: 4 (lower is better) Translates to: KASLVNKSSSRISKATQRQQSHI*GNGAAD Trigger: ATCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTG...CCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACCAGGCTGGCCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR TCA 90 bp | GCAGAAAGCATGGGGCTGCTTTCCATAGGATACAGAGAGGCACAGAGGTTAAGACTGACTATAAGAGTCTaGTCTAGTCGGCTGACACGC | + |
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Preference number: 4 (lower is better) Translates to: AESMGLLSIGYREAQRLRLTIRV*SSRLTR Trigger: GCGTGTCAGCCGACTAGATCAGACTCTTATAGTCAG...TCTTAACCTCTGTGCCTCTCTGTATCCTATGGAAAGCAGCCCCATGCTTTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | CAACTGAGGTCGACAATGCAAATGTTATCTCAGGACATTTCCCCTTGGTTTCTGCGGCCATGTCCCCCGTaGAAAGCAGGTCATAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QLRSTMQMLSQDISPWFLRPCPP*KAGHSR Trigger: TCTGCTATGACCTGCTTTCCACGGGGGACATGGCCG...CAGAAACCAAGGGGAAATGTCCTGAGATAACATTTGCATTGTCGACCTCAGTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR GCA 90 bp | CAACTGAGGTCGACAATGCAAATGTTATCTCAGGACATTTCCCCTTGGTTTCTGCATTTGCGGCAATGGTaGCGCCGATTGACTGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: QLRSTMQMLSQDISPWFLHLRQW*RRLTGV Trigger: CACACCAGTCAATCGGCGGCACCATTGCCGCAAATG...CAGAAACCAAGGGGAAATGTCCTGAGATAACATTTGCATTGTCGACCTCAGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | AAGGCCAGCCTGGTCAACAAATCGAGTTCCAGGATAAGCAAAGCTACACAGAGGGTGCCGCCGATTGACTaGTGTGAATTTTGCTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: KASLVNKSSSRISKATQRVPPID*CEFCFL Trigger: CAGAAAGCAAAATTCACACCAGTCAATCGGCGGCAC...CCTCTGTGTAGCTTTGCTTATCCTGGAACTCGATTTGTTGACCAGGCTGGCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR TCA 90 bp | TTACTTAAGCATGCCAGGGGCCAGAATGTGCCTGGCACGTCCAGTGCTATGCAGACACACTTATTTATGTaGTTCATCCACTCTGACTTC | + |
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Preference number: 4 (lower is better) Translates to: LLKHARGQNVPGTSSAMQTHLFM*FIHSDF Trigger: GAAGTCAGAGTGGATGAATCACATAAATAAGTGTGT...CTGCATAGCACTGGACGTGCCAGGCACATTCTGGCCCCTGGCATGCTTAAGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR GCA 90 bp | GCAGAAAGCATGGGGCTGCTTTCCATAGGATACAGAGAGGCACAGAGGTTAAGAAGTGGCAGCATAAACTaGAAACGACTTAGTCGGTGT | + |
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Preference number: 4 (lower is better) Translates to: AESMGLLSIGYREAQRLRSGSIN*KRLSRC Trigger: ACACCGACTAAGTCGTTTGCAGTTTATGCTGCCACT...TCTTAACCTCTGTGCCTCTCTGTATCCTATGGAAAGCAGCCCCATGCTTTCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | ACTTCTATACTAGTGATGAGTTTCAAATCGAATCCCGAACAGTGGCAACGGGCTACTCTGACTTCTCCGTaGCAGTGGCAGCATAAACTG | + |
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Preference number: 4 (lower is better) Translates to: TSILVMSFKSNPEQWQRATLTSP*QWQHKL Trigger: CAGTTTATGCTGCCACTGCCACGGAGAAGTCAGAGT...AGCCCGTTGCCACTGTTCGGGATTCGATTTGAAACTCATCACTAGTATAGAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | TTTCATTCACAAGTTACTGACTCAAACCCTAGGACATCTGCAGAATTATGCAGGCAGCATGCTCGTTGCTaGGCGTCTTCCCACTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: FHSQVTDSNPRTSAELCRQHARC*ASSHFW Trigger: CCAAAAGTGGGAAGACGCCCAGCAACGAGCATGCTG...CCTGCATAATTCTGCAGATGTCCTAGGGTTTGAGTCAGTAACTTGTGAATGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | TGTAGCTCACACACTTTCAAAACTGAGCAGCAAAGTAAAATTAGTACTGTAACCAGCGCATACACACGGTaGCCTCAGAGTCAGGAACCC | + |
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Preference number: 4 (lower is better) Translates to: CSSHTFKTEQQSKISTVTSAYTR*PQSQEP Trigger: GGGTTCCTGACTCTGAGGCCACCGTGTGTATGCGCT...GGTTACAGTACTAATTTTACTTTGCTGCTCAGTTTTGAAAGTGTGTGAGCTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CCA 90 bp | ACTTCTATACTAGTGATGAGTTTCAAATCGAATCCCGAACAGTGGCAACGGGCTACAGGCTTAGAAGACTaGCTGGGAAGAAGAAATCGC | + |
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Preference number: 4 (lower is better) Translates to: TSILVMSFKSNPEQWQRATGLED*LGRRNR Trigger: GCGATTTCTTCTTCCCAGCCAGTCTTCTAAGCCTGT...AGCCCGTTGCCACTGTTCGGGATTCGATTTGAAACTCATCACTAGTATAGAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR GCA 90 bp | TGTAGCTCACACACTTTCAAAACTGAGCAGCAAAGTAAAATTAGTACTGTAACCCAGCAGCATGCTCGTTaGTGGGCGTCTTCCCACTTT | + |
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Preference number: 4 (lower is better) Translates to: CSSHTFKTEQQSKISTVTQQHAR*WASSHF Trigger: AAAGTGGGAAGACGCCCAGCAACGAGCATGCTGCTG...GGTTACAGTACTAATTTTACTTTGCTGCTCAGTTTTGAAAGTGTGTGAGCTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR TCA 90 bp | TTTCATTCACAAGTTACTGACTCAAACCCTAGGACATCTGCAGAATTATGCAGGGTGAATTTTGCTTTCTaGCAGCGCATACACACGGTG | + |
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Preference number: 4 (lower is better) Translates to: FHSQVTDSNPRTSAELCRVNFAF*QRIHTV Trigger: CACCGTGTGTATGCGCTGTCAGAAAGCAAAATTCAC...CCTGCATAATTCTGCAGATGTCCTAGGGTTTGAGTCAGTAACTTGTGAATGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR GCA 90 bp | CAACTGAGGTCGACAATGCAAATGTTATCTCAGGACATTTCCCCTTGGTTTCTGGACTGGTGTGAATTTTaGTTTCTGACAGCGCATACA | + |
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Preference number: 4 (lower is better) Translates to: QLRSTMQMLSQDISPWFLDWCEF*FLTAHT Trigger: TGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTC...CAGAAACCAAGGGGAAATGTCCTGAGATAACATTTGCATTGTCGACCTCAGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS GCA 90 bp | CGCATACACACGGTGGCCTCAGAGTCAGGAACCCAGACAGCAGCATaGTCGTTGCTGGGCGTCTTCCCACTTTTGGAGAGTAAATCAGTG | + |
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Preference number: 5 (lower is better) Translates to: RIHTVASESGTQTAA*SLLGVFPLLESKSV Trigger: CACTGATTTACTCTCCAAAAGTGGGAAGACGCCCAGCAACGAGCATGCTGCTGTCTGGGTTCCTGACTCTGAGGCCACCGTGTGTATGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS-3UTR CAA 90 bp | TTACTTAAGCATGCCAGGGGCCAGAATGTGCCTGGCACGTCCAGTGCTATGCAGACAACAAAGCCACATTaGCGGCAATGGTGCCGCCGA | + |
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Preference number: 5 (lower is better) Translates to: LLKHARGQNVPGTSSAMQTTKPH*RQWCRR Trigger: TCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTGT...CTGCATAGCACTGGACGTGCCAGGCACATTCTGGCCCCTGGCATGCTTAAGTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS TCA 90 bp | TTGCGGCAATGGTGCCGCCGATTGACTGGTGTGAATTTTGCTTTCTaGCAGCGCATACACACGGTGGCCTCAGAGTCAGGAACCCAGACA | + |
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Preference number: 5 (lower is better) Translates to: LRQWCRRLTGVNFAF*QRIHTVASESGTQT Trigger: TGTCTGGGTTCCTGACTCTGAGGCCACCGTGTGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS GCA 90 bp | GCCACATTTGCGGCAATGGTGCCGCCGATTGACTGGTGTGAATTTTaGTTTCTGACAGCGCATACACACGGTGGCCTCAGAGTCAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: ATFAAMVPPIDWCEF*FLTAHTHGGLRVRN Trigger: GTTCCTGACTCTGAGGCCACCGTGTGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS-3UTR CAA 90 bp | TCATGGCTAAAGCAAACTGAGAGCGCCCCCAAAGCTGACTCTCAGGCAGTCAATACAGCAGCATGCTCGTaGCTGGGCGTCTTCCCACTT | + |
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Preference number: 5 (lower is better) Translates to: SWLKQTESAPKADSQAVNTAACS*LGVFPL Trigger: AAGTGGGAAGACGCCCAGCAACGAGCATGCTGCTGT...ATTGACTGCCTGAGAGTCAGCTTTGGGGGCGCTCTCAGTTTGCTTTAGCCATGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS TCA 90 bp | AACACTCCTTCTCCAATAAGCACTCGCCCAGGGATGGTCAAGGGCTaGCCAGCGGCTCCAAAACAGCTCTCCACAATACTTATGCGTCTA | + |
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Preference number: 5 (lower is better) Translates to: NTPSPISTRPGMVKG*PAAPKQLSTILMRL Trigger: TAGACGCATAAGTATTGTGGAGAGCTGTTTTGGAGCCGCTGGTCAGCCCTTGACCATCCCTGGGCGAGTGCTTATTGGAGAAGGAGTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS-3UTR CAA 90 bp | GGGAGCAGAAAGCATGGGGCTGCTTTCCATAGGATACAGAGAGGCACAGAGGTTCAATGGTGCCGCCGATaGACTGGTGTGAATTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: GSRKHGAAFHRIQRGTEVQWCRR*TGVNFA Trigger: AGCAAAATTCACACCAGTCAATCGGCGGCACCATTG...AACCTCTGTGCCTCTCTGTATCCTATGGAAAGCAGCCCCATGCTTTCTGCTCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS CCA 90 bp | ACAAACAACAAAGCCACATTTGCGGCAATGGTGCCGCCGATTGACTaGTGTGAATTTTGCTTTCTGACAGCGCATACACACGGTGGCCTC | + |
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Preference number: 5 (lower is better) Translates to: TNNKATFAAMVPPID*CEFCFLTAHTHGGL Trigger: GAGGCCACCGTGTGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTGTTTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS TCA 90 bp | CATGCTCGTTGCTGGGCGTCTTCCCACTTTTGGAGAGTAAATCAGTaGCACACTTATTTATGTGATTCATCCACTCTGACTTCTCCGTGG | + |
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Preference number: 5 (lower is better) Translates to: HARCWASSHFWRVNQ*HTYLCDSSTLTSPW Trigger: CCACGGAGAAGTCAGAGTGGATGAATCACATAAATAAGTGTGTCACTGATTTACTCTCCAAAAGTGGGAAGACGCCCAGCAACGAGCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS-3UTR CAA 90 bp | TGTCTAAATCAATCAAACAAGAAAGAAGGTAGGGCTTACGTTTATTTCAGTGACGGCGTCTTCCCACTTTaGGAGAGTAAATCAGTGACA | + |
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Preference number: 5 (lower is better) Translates to: CLNQSNKKEGRAYVYFSDGVFPL*ESKSVT Trigger: TGTCACTGATTTACTCTCCAAAAGTGGGAAGACGCC...GTCACTGAAATAAACGTAAGCCCTACCTTCTTTCTTGTTTGATTGATTTAGACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS-3UTR CAA 90 bp | TGTCTAAATCAATCAAACAAGAAAGAAGGTAGGGCTTACGTTTATTTCAGTGACAATTCCCCTTCATCTTaGATGGAATCAATGGTGACA | + |
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Preference number: 5 (lower is better) Translates to: CLNQSNKKEGRAYVYFSDNSPSS*MESMVT Trigger: TGTCACCATTGATTCCATCAAAGATGAAGGGGAATT...GTCACTGAAATAAACGTAAGCCCTACCTTCTTTCTTGTTTGATTGATTTAGACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054776.4 |
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| CDS CAA 90 bp | CACACGGTGGCCTCAGAGTCAGGAACCCAGACAGCAGCATGCTCGTaGCTGGGCGTCTTCCCACTTTTGGAGAGTAAATCAGTGACACAC | + |
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Preference number: 6 (lower is better) Translates to: HTVASESGTQTAACS*LGVFPLLESKSVTH Trigger: GTGTGTCACTGATTTACTCTCCAAAAGTGGGAAGACGCCCAGCAACGAGCATGCTGCTGTCTGGGTTCCTGACTCTGAGGCCACCGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS GCA 72 bp | GCGGCAATGGTGCCGCCGATTGACTGGTGTGAATTTTaGTTTCTGACAGCGCATACACACGGTGGCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: AAMVPPIDWCEF*FLTAHTHGGLR Trigger: TCTGAGGCCACCGTGTGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS TCA 72 bp | TCTCCAATAAGCACTCGCCCAGGGATGGTCAAGGGCTaGCCAGCGGCTCCAAAACAGCTCTCCACAATACTT | + |
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Preference number: 6 (lower is better) Translates to: SPISTRPGMVKG*PAAPKQLSTIL Trigger: AAGTATTGTGGAGAGCTGTTTTGGAGCCGCTGGTCAGCCCTTGACCATCCCTGGGCGAGTGCTTATTGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS TCA 72 bp | TGGTGCCGCCGATTGACTGGTGTGAATTTTGCTTTCTaGCAGCGCATACACACGGTGGCCTCAGAGTCAGGA | + |
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Preference number: 6 (lower is better) Translates to: WCRRLTGVNFAF*QRIHTVASESG Trigger: TCCTGACTCTGAGGCCACCGTGTGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTCAATCGGCGGCACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS GCA 72 bp | CCTCAGAGTCAGGAACCCAGACAGCAGCATGCTCGTTaGTGGGCGTCTTCCCACTTTTGGAGAGTAAATCAG | + |
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Preference number: 6 (lower is better) Translates to: PQSQEPRQQHAR*WASSHFWRVNQ Trigger: CTGATTTACTCTCCAAAAGTGGGAAGACGCCCAGCAACGAGCATGCTGCTGTCTGGGTTCCTGACTCTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CAA 72 bp | GCCTCAGAGTCAGGAACCCAGACAGCAGCATGCTCGTaGCTGGGCGTCTTCCCACTTTTGGAGAGTAAATCA | + |
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Preference number: 6 (lower is better) Translates to: ASESGTQTAACS*LGVFPLLESKS Trigger: TGATTTACTCTCCAAAAGTGGGAAGACGCCCAGCAACGAGCATGCTGCTGTCTGGGTTCCTGACTCTGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CCA 72 bp | AAAGCCACATTTGCGGCAATGGTGCCGCCGATTGACTaGTGTGAATTTTGCTTTCTGACAGCGCATACACAC | + |
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Preference number: 6 (lower is better) Translates to: KATFAAMVPPID*CEFCFLTAHTH Trigger: GTGTGTATGCGCTGTCAGAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CCA 72 bp | CAGGGACCACAAACAACAAAGCCACATTTGCGGCAATaGTGCCGCCGATTGACTGGTGTGAATTTTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: QGPQTTKPHLRQ*CRRLTGVNFAF Trigger: GAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTGTTTGTGGTCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CAA 72 bp | TTTTCAGAGCAGGGACCACAAACAACAAAGCCACATTaGCGGCAATGGTGCCGCCGATTGACTGGTGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: FSEQGPQTTKPH*RQWCRRLTGVN Trigger: ATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTGTTTGTGGTCCCTGCTCTGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CAA 90 bp | AGAAATCGCTTTTCAGAGCAGGGACCACAAACAACAAAGCCACATTaGCGGCAATGGTGCCGCCGATTGACTGGTGTGAATTTTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: RNRFSEQGPQTTKPH*RQWCRRLTGVNFAF Trigger: GAAAGCAAAATTCACACCAGTCAATCGGCGGCACCATTGCCGCAAATGTGGCTTTGTTGTTTGTGGTCCCTGCTCTGAAAAGCGATTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS TCA 72 bp | ATCAGTGACACACTTATTTATGTGATTCATCCACTCTaGCTTCTCCGTGGCAGTGGCAGCATAAACTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: ISDTLIYVIHPL*LLRGSGSINCK Trigger: TTTGCAGTTTATGCTGCCACTGCCACGGAGAAGTCAGAGTGGATGAATCACATAAATAAGTGTGTCACTGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS TCA 72 bp | CTTTTGGAGAGTAAATCAGTGACACACTTATTTATGTaGTTCATCCACTCTGACTTCTCCGTGGCAGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LLESKSVTHLFM*FIHSDFSVAVA Trigger: TGCCACTGCCACGGAGAAGTCAGAGTGGATGAATCACATAAATAAGTGTGTCACTGATTTACTCTCCAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS TCA 72 bp | TGCTGGGCGTCTTCCCACTTTTGGAGAGTAAATCAGTaGCACACTTATTTATGTGATTCATCCACTCTGACT | + |
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Preference number: 6 (lower is better) Translates to: CWASSHFWRVNQ*HTYLCDSSTLT Trigger: AGTCAGAGTGGATGAATCACATAAATAAGTGTGTCACTGATTTACTCTCCAAAAGTGGGAAGACGCCCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CAA 90 bp | GTCGGTGTCTTAATAAGCCATCCATTCCGTAATTCCCCTTCATCTTaGATGGAATCAATGGTGACATTTTCCAAGGGAATAATATGCTGT | + |
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Preference number: 6 (lower is better) Translates to: VGVLISHPFRNSPSS*MESMVTFSKGIICC Trigger: ACAGCATATTATTCCCTTGGAAAATGTCACCATTGATTCCATCAAAGATGAAGGGGAATTACGGAATGGATGGCTTATTAAGACACCGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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| CDS CAA 72 bp | TTAATAAGCCATCCATTCCGTAATTCCCCTTCATCTTaGATGGAATCAATGGTGACATTTTCCAAGGGAATA | + |
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Preference number: 6 (lower is better) Translates to: LISHPFRNSPSS*MESMVTFSKGI Trigger: TATTCCCTTGGAAAATGTCACCATTGATTCCATCAAAGATGAAGGGGAATTACGGAATGGATGGCTTATTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000054776.4 ENSMUST00000137891.2 |
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