RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLEKHB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026123

Ensembl transcript IDs: ENSMUST00000027297.11, ENSMUST00000156687.8

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCAGCCTGTGCCTCCTGCACTTCCTCTGCCCACCGCCCCACCTCTaGCTCCTCACCGGTCGCCTTCCCTGTTTCCGCCTCTGCCTCTAC +
Preference number: 1 (lower is better)
Translates to: ASLCLLHFLCPPPHL*LLTGRLPCFRLCLY
Trigger: GTAGAGGCAGAGGCGGAAACAGGGAAGGCGACCGGTGAGGAGGCAGAGGTGGGGCGGTGGGCAGAGGAAGTGCAGGAGGCACAGGCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp CTGGCAAGGGGGCTGGAGAGACGGCTCAGCAGTGAGATCACCTGCTaGTCCTCCAGAGAGCCCTGCTTCAGTTCCCAGCACCCACAAGTC +
Preference number: 1 (lower is better)
Translates to: LARGLERRLSSEITC*SSREPCFSSQHPQV
Trigger: GACTTGTGGGTGCTGGGAACTGAAGCAGGGCTCTCTGGAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 90 bp GAAAGAGCTACCCAGCAGCACGGCGGCAAGGCAGCACGCATGCACTaGGCTGAGCAAAGTCAGAATGAATGCTTCCTGGGAGCACCCTGG +
Preference number: 1 (lower is better)
Translates to: ERATQQHGGKAARMH*AEQSQNECFLGAPW
Trigger: CCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCATGCGTGCTGCCTTGCCGCCGTGCTGCTGGGTAGCTCTTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp TGTTTCAGACTGACTGGCAAGGGGGCTGGAGAGACGGCTCAGCAGTaGGATCACCTGCTGCTCCTCCAGAGAGCCCTGCTTCAGTTCCCA +
Preference number: 1 (lower is better)
Translates to: CFRLTGKGAGETAQQ*DHLLLLQRALLQFP
Trigger: TGGGAACTGAAGCAGGGCTCTCTGGAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAGTCAGTCTGAAACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp ACCAAGAAAGAGCTACCCAGCAGCACGGCGGCAAGGCAGCACGCATaGACTGGGCTGAGCAAAGTCAGAATGAATGCTTCCTGGGAGCAC +
Preference number: 1 (lower is better)
Translates to: TKKELPSSTAARQHA*TGLSKVRMNASWEH
Trigger: GTGCTCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCATGCGTGCTGCCTTGCCGCCGTGCTGCTGGGTAGCTCTTTCTTGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp GCCCAGCACAGTAGCTCACACAAACAATCCCAGCACTTAGGGGGCTaGGAGGAGGAACTCAAGCCGAGAACCAATCTGGGATGCGCAGGA +
Preference number: 1 (lower is better)
Translates to: AQHSSSHKQSQHLGG*EEELKPRTNLGCAG
Trigger: TCCTGCGCATCCCAGATTGGTTCTCGGCTTGAGTTCCTCCTCCCAGCCCCCTAAGTGCTGGGATTGTTTGTGTGAGCTACTGTGCTGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp AATCAAGTCAAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTaGCTGGTACAGCTAGCCCCATTGGGGCCAGGAGACAGGCAGGGC +
Preference number: 1 (lower is better)
Translates to: NQVKLVTGMIRLNYG*LVQLAPLGPGDRQG
Trigger: GCCCTGCCTGTCTCCTGGCCCCAATGGGGCTAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGACTTGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 90 bp CCCAGGGAACCTCTTGTCTCCACATCCCCAGTGCTGGGACACAGGTaGACATTGCCATGCCTGGCTTTTATATGGCTCTTACATGGCGCT +
Preference number: 1 (lower is better)
Translates to: PREPLVSTSPVLGHR*TLPCLAFIWLLHGA
Trigger: AGCGCCATGTAAGAGCCATATAAAAGCCAGGCATGGCAATGTGCACCTGTGTCCCAGCACTGGGGATGTGGAGACAAGAGGTTCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 90 bp ACTTATCATGAGCTGCTAGTGTTTCAGACTGACTGGCAAGGGGGCTaGAGAGACGGCTCAGCAGTGAGATCACCTGCTGCTCCTCCAGAG +
Preference number: 1 (lower is better)
Translates to: TYHELLVFQTDWQGG*RDGSAVRSPAAPPE
Trigger: CTCTGGAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAGTCAGTCTGAAACACTAGCAGCTCATGATAAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp TCACCACAAGAAGAAACCAAGGCAGCAAGCACCAGGCATGGCAGCTaGTCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGAG +
Preference number: 1 (lower is better)
Translates to: SPQEETKAASTRHGS*SARAHMPNHEQETE
Trigger: CTCTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCATGCCTGGTGCTTGCTGCCTTGGTTTCTTCTTGTGGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp AGACGGCTCAGCAGTGAGATCACCTGCTGCTCCTCCAGAGAGCCCTaGTTCAGTTCCCAGCACCCACAAGTCAACTCAACCATGTATAAC +
Preference number: 1 (lower is better)
Translates to: RRLSSEITCCSSREP*FSSQHPQVNSTMYN
Trigger: GTTATACATGGTTGAGTTGACTTGTGGGTGCTGGGAACTGAAGCAGGGCTCTCTGGAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp CTTGTCTCCACATCCCCAGTGCTGGGACACAGGTGCACATTGCCATaGCTGGCTTTTATATGGCTCTTACATGGCGCTGGATCCCATCTC +
Preference number: 1 (lower is better)
Translates to: LVSTSPVLGHRCTLP*LAFIWLLHGAGSHL
Trigger: GAGATGGGATCCAGCGCCATGTAAGAGCCATATAAAAGCCAGGCATGGCAATGTGCACCTGTGTCCCAGCACTGGGGATGTGGAGACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 90 bp CAGCACGCATGCACTGGGCTGAGCAAAGTCAGAATGAATGCTTCCTaGGAGCACCCTGGAGAAACAAGACTATGCAAAGTAGAGGGCGGG +
Preference number: 1 (lower is better)
Translates to: QHACTGLSKVRMNAS*EHPGETRLCKVEGG
Trigger: CCCGCCCTCTACTTTGCATAGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCATGCGTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp ACACAGGTGCACATTGCCATGCCTGGCTTTTATATGGCTCTTACATaGCGCTGGATCCCATCTCAGTGCGCATGTGTAACCTCCGGTGCG +
Preference number: 1 (lower is better)
Translates to: TQVHIAMPGFYMALT*RWIPSQCACVTSGA
Trigger: CGCACCGGAGGTTACACATGCGCACTGAGATGGGATCCAGCGCCATGTAAGAGCCATATAAAAGCCAGGCATGGCAATGTGCACCTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp AAATCCCTGAGATGCTCTACCCAATCCCATTTCTCACTCAAAACCTaGGACTCTGGACAGCCACGGGGCCTCCCTTCCACTGCTGAGGAA +
Preference number: 1 (lower is better)
Translates to: KSLRCSTQSHFSLKT*DSGQPRGLPSTAEE
Trigger: TTCCTCAGCAGTGGAAGGGAGGCCCCGTGGCTGTCCAGAGTCTCAGGTTTTGAGTGAGAAATGGGATTGGGTAGAGCATCTCAGGGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp CTACTTGGCAACTGTCTCACATGGAGATCTGTTGAAGACTTGATCTaGCCAAGAAAGAGCTACCCAGCAGCACGGCGGCAAGGCAGCACG +
Preference number: 1 (lower is better)
Translates to: LLGNCLTWRSVEDLI*PRKSYPAARRQGST
Trigger: CGTGCTGCCTTGCCGCCGTGCTGCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATCTCCATGTGAGACAGTTGCCAAGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp AGCTGGCAATCAATATACCTAAAACAAACACTGAGAGCAGGTCGCTaGGCAGCTCCCTGCATGCCTCCACCCACCGGCACTCGAATCAAT +
Preference number: 1 (lower is better)
Translates to: SWQSIYLKQTLRAGR*AAPCMPPPTGTRIN
Trigger: ATTGATTCGAGTGCCGGTGGGTGGAGGCATGCAGGGAGCTGCCCAGCGACCTGCTCTCAGTGTTTGTTTTAGGTATATTGATTGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp AATGTGCTGCATGCAGCTACAAATGTGCCCACCTGTGCCGTAGCTTaGAGAATTCTGAGCTATACTTCCTCCCATGGTGCCACAGCCAGC +
Preference number: 1 (lower is better)
Translates to: NVLHAATNVPTCAVA*RILSYTSSHGATAS
Trigger: GCTGGCTGTGGCACCATGGGAGGAAGTATAGCTCAGAATTCTCCAAGCTACGGCACAGGTGGGCACATTTGTAGCTGCATGCAGCACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp GGCACCACCTCATCTACTTGGCAACTGTCTCACATGGAGATCTGTTaGAGACTTGATCTGACCAAGAAAGAGCTACCCAGCAGCACGGCG +
Preference number: 1 (lower is better)
Translates to: GTTSSTWQLSHMEIC*RLDLTKKELPSSTA
Trigger: CGCCGTGCTGCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATCTCCATGTGAGACAGTTGCCAAGTAGATGAGGTGGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp TCGTTCCCTCTAACTCAAGAATCGCAGGACTCACTGAGGTACAAGTaGCGCCGCAAAAGCCATCGAAAGGGTGGCGTCTATGAGGATCAG +
Preference number: 1 (lower is better)
Translates to: SFPLTQESQDSLRYK*RRKSHRKGGVYEDQ
Trigger: CTGATCCTCATAGACGCCACCCTTTCGATGGCTTTTGCGGCGTCACTTGTACCTCAGTGAGTCCTGCGATTCTTGAGTTAGAGGGAACGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 90 bp GGCAAGGCAGCACGCATGCACTGGGCTGAGCAAAGTCAGAATGAATaGTTCCTGGGAGCACCCTGGAGAAACAAGACTATGCAAAGTAGA +
Preference number: 1 (lower is better)
Translates to: GKAARMHWAEQSQNE*FLGAPWRNKTMQSR
Trigger: TCTACTTTGCATAGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCATGCGTGCTGCCTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp TGGGCAGGTGTCAACAGGTCCCCAAGGAGTATCGAGAAAGCACTATaGGCACCACCTCATCTACTTGGCAACTGTCTCACATGGAGATCT +
Preference number: 1 (lower is better)
Translates to: WAGVNRSPRSIEKAL*APPHLLGNCLTWRS
Trigger: AGATCTCCATGTGAGACAGTTGCCAAGTAGATGAGGTGGTGCCCATAGTGCTTTCTCGATACTCCTTGGGGACCTGTTGACACCTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp CTCATCTACTTGGCAACTGTCTCACATGGAGATCTGTTGAAGACTTaGTCTGACCAAGAAAGAGCTACCCAGCAGCACGGCGGCAAGGCA +
Preference number: 1 (lower is better)
Translates to: LIYLATVSHGDLLKT*SDQERATQQHGGKA
Trigger: TGCCTTGCCGCCGTGCTGCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATCTCCATGTGAGACAGTTGCCAAGTAGATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp ATGCCACGCTGCGGGTTTGTTCAGGCTACATGGGATTCTCCCACCTaGGCCATAGCCTCAGGACTCAATTCCAAAGAAATAAAGCAGACC +
Preference number: 1 (lower is better)
Translates to: MPRCGFVQATWDSPT*AIASGLNSKEIKQT
Trigger: GGTCTGCTTTATTTCTTTGGAATTGAGTCCTGAGGCTATGGCTCAGGTGGGAGAATCCCATGTAGCCTGAACAAACCCGCAGCGTGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp TTAGGGGGCTGGGAGGAGGAACTCAAGCCGAGAACCAATCTGGGATaGGCAGGAAGACCCTGTCTCAAAGCAAACAACTATCAAGTATTC +
Preference number: 1 (lower is better)
Translates to: LGGWEEELKPRTNLG*AGRPCLKANNYQVF
Trigger: GAATACTTGATAGTTGTTTGCTTTGAGACAGGGTCTTCCTGCGCATCCCAGATTGGTTCTCGGCTTGAGTTCCTCCTCCCAGCCCCCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp ACACGCAGCAGGGGTCTAGAAGAGAATCCACAGTTAAAGAAGCTGTaGCTCTCCTCACCACACTTGCACACATCTTCCTCCATCAGCAGT +
Preference number: 1 (lower is better)
Translates to: TRSRGLEENPQLKKL*LSSPHLHTSSSISS
Trigger: ACTGCTGATGGAGGAAGATGTGTGCAAGTGTGGTGAGGAGAGTCACAGCTTCTTTAACTGTGGATTCTCTTCTAGACCCCTGCTGCGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp CGCCGCAAAAGCCATCGAAAGGGTGGCGTCTATGAGGATCAGGGCTaGGGAACTGAGATGCCCAAGAATGTATTCCATTCTGGGTATATA +
Preference number: 1 (lower is better)
Translates to: RRKSHRKGGVYEDQG*GTEMPKNVFHSGYI
Trigger: TATATACCCAGAATGGAATACATTCTTGGGCATCTCAGTTCCTCAGCCCTGATCCTCATAGACGCCACCCTTTCGATGGCTTTTGCGGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 90 bp AGACAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATaGCTCTGTGCTTCAGAGTGCACACTGGCTCTTGTAAAGGACCCG +
Preference number: 1 (lower is better)
Translates to: RQLESVSTERMDLRR*LCASECTLALVKDP
Trigger: CGGGTCCTTTACAAGAGCCAGTGTGCACTCTGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 90 bp ACTAATTATTTTGGGAGCTATAGAAAGAATCTGAGAGGCCATGTGTaGCAGACGCACCCTTTGCCACTGAGCCCCAGGGAACCTCTTGTC +
Preference number: 1 (lower is better)
Translates to: TNYFGSYRKNLRGHV*QTHPLPLSPREPLV
Trigger: GACAAGAGGTTCCCTGGGGCTCAGTGGCAAAGGGTGCGTCTGCCACACATGGCCTCTCAGATTCTTTCTATAGCTCCCAAAATAATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 90 bp GAAGGACTCAGGCTCTCACTCACAGCATACCTCGGGCTTTCTTTGTaGTACCATGCAGGTCAGTCACAATTATTAGATTACCACCTTCAA +
Preference number: 1 (lower is better)
Translates to: EGLRLSLTAYLGLSL*YHAGQSQLLDYHLQ
Trigger: TTGAAGGTGGTAATCTAATAATTGTGACTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTATGCTGTGAGTGAGAGCCTGAGTCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp AATAATCAAAGACTGGGCTGGAGAGATAATTTAGTGGGGCCAATCTaGCAACCCAAGTTCAAACTCTGGGACCCACACAGTGTTAGGAGA +
Preference number: 1 (lower is better)
Translates to: NNQRLGWRDNLVGPI*QPKFKLWDPHSVRR
Trigger: TCTCCTAACACTGTGTGGGTCCCAGAGTTTGAACTTGGGTTGTCAGATTGGCCCCACTAAATTATCTCTCCAGCCCAGTCTTTGATTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp TGTAGTTATAACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTaGTTCAGCGGCAACCAACAAGATCCTGTACTTCAGCTTGTAAGG +
Preference number: 1 (lower is better)
Translates to: CSYNTKKTAWFLFTP*FSGNQQDPVLQLVR
Trigger: CCTTACAAGCTGAAGTACAGGATCTTGTTGGTTGCCGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp AAAATAAGAGCAGGCAATATTCTCAATATCAGATGCAGATATTGTTaGCCACTGAAACCTATCAAGCTGGGCCTCCGCAGACCACATCGC +
Preference number: 1 (lower is better)
Translates to: KIRAGNILNIRCRYC*PLKPIKLGLRRPHR
Trigger: GCGATGTGGTCTGCGGAGGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATATTGAGAATATTGCCTGCTCTTATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 90 bp CTCACATGCCCAACCATGAGCAGGAAACAGAGAGCTATCAGGAAATaGTCCAAAGCTTTTGAAACCTCAAAGCTTGCCCTGAGTAATACA +
Preference number: 1 (lower is better)
Translates to: LTCPTMSRKQRAIRK*SKAFETSKLALSNT
Trigger: TGTATTACTCAGGGCAAGCTTTGAGGTTTCAAAAGCTTTGGACCATTTCCTGATAGCTCTCTGTTTCCTGCTCATGGTTGGGCATGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp ACAGCACAGGATGTAAAATCAGCATCATGCTTATTAAAGCGACACTaGACGGCGTCCGTACCATGTTGTCACATATCCCATCTATCAGAG +
Preference number: 1 (lower is better)
Translates to: TAQDVKSASCLLKRH*TASVPCCHISHLSE
Trigger: CTCTGATAGATGGGATATGTGACAACATGGTACGGACGCCGTTCAGTGTCGCTTTAATAAGCATGATGCTGATTTTACATCCTGTGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp TCACATATCCCATCTATCAGAGATGACAGAAAAACAAATGTCAGCTaGAAATGGGCAGGTGTCAACAGGTCCCCAAGGAGTATCGAGAAA +
Preference number: 1 (lower is better)
Translates to: SHIPSIRDDRKTNVS*KWAGVNRSPRSIEK
Trigger: TTTCTCGATACTCCTTGGGGACCTGTTGACACCTGCCCATTTCCAGCTGACATTTGTTTTTCTGTCATCTCTGATAGATGGGATATGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 90 bp GTAAGTAAAGCACGGAGCTTTAGCAATGGTGACACTGTGAGCAAATaGCAGTCATACAGCACAGGATGTAAAATCAGCATCATGCTTATT +
Preference number: 1 (lower is better)
Translates to: VSKARSFSNGDTVSK*QSYSTGCKISIMLI
Trigger: AATAAGCATGATGCTGATTTTACATCCTGTGCTGTATGACTGCCATTTGCTCACAGTGTCACCATTGCTAAAGCTCCGTGCTTTACTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 90 bp TGCAGAGCCTCACATACACCAAGCACTAAACTTCACCCTCAGACTTaGTATTCTTTACTCTTTGTATTTGTTGTTCACATGCACAGAGCT +
Preference number: 1 (lower is better)
Translates to: CRASHTPSTKLHPQT*YSLLFVFVVHMHRA
Trigger: AGCTCTGTGCATGTGAACAACAAATACAAAGAGTAAAGAATATCAAGTCTGAGGGTGAAGTTTAGTGCTTGGTGTATGTGAGGCTCTGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp GGATCCAGAGAGATTAGAGTCTGTGCCATCACAGAAAGAAAAACATaGCAATATGAACGAGGAACAGCGGAGAGTTCACATCTCAAAATA +
Preference number: 1 (lower is better)
Translates to: GSREIRVCAITERKT*QYERGTAESSHLKI
Trigger: TATTTTGAGATGTGAACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCACAGACTCTAATCTCTCTGGATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 90 bp ACCCTCAGACTTGATATTCTTTACTCTTTGTATTTGTTGTTCACATaGACAGAGCTAAGTGAATGTTCCAAAGACTTCAATGTGGGCCTT +
Preference number: 1 (lower is better)
Translates to: TLRLDILYSLYLLFT*TELSECSKDFNVGL
Trigger: AAGGCCCACATTGAAGTCTTTGGAACATTCACTTAGCTCTGTGCATGTGAACAACAAATACAAAGAGTAAAGAATATCAAGTCTGAGGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 90 bp TATTCTTTACTCTTTGTATTTGTTGTTCACATGCACAGAGCTAAGTaGATGTTCCAAAGACTTCAATGTGGGCCTTTTATTTTCTGCAGT +
Preference number: 1 (lower is better)
Translates to: YSLLFVFVVHMHRAK*MFQRLQCGPFIFCS
Trigger: ACTGCAGAAAATAAAAGGCCCACATTGAAGTCTTTGGAACATTCACTTAGCTCTGTGCATGTGAACAACAAATACAAAGAGTAAAGAATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp GGCATGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGTCCTCCAGAGAGCCCTaGTTCAGTTCCCAGCACCCA +
Preference number: 2 (lower is better)
Translates to: GMAADQRELTCPTMSRKQSSREP*FSSQHP
Trigger: TGGGTGCTGGGAACTGAAGCAGGGCTCTCTGGAGGA...CTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp TGGGCCTCCGCAGACCACATCGCTCTCAGCACTGTCTTCCAAGAACCTACTGGGTTAGTGGGGCCAATCTaGCAACCCAAGTTCAAACTC +
Preference number: 2 (lower is better)
Translates to: WASADHIALSTVFQEPTGLVGPI*QPKFKL
Trigger: GAGTTTGAACTTGGGTTGTCAGATTGGCCCCACTAA...CCCAGTAGGTTCTTGGAAGACAGTGCTGAGAGCGATGTGGTCTGCGGAGGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp TGGGCCTCCGCAGACCACATCGCTCTCAGCACTGTCTTCCAAGAACCTACTGGGGGAAAGGAGTTAATTTaGGCTTACAGTTCCAGAGGG +
Preference number: 2 (lower is better)
Translates to: WASADHIALSTVFQEPTGGKELI*AYSSRG
Trigger: CCCTCTGGAACTGTAAGCCCAAATTAACTCCTTTCC...CCCAGTAGGTTCTTGGAAGACAGTGCTGAGAGCGATGTGGTCTGCGGAGGCCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp AGTCAGAATGAATGCTTCCTGGGAGCACCCTGGAGAAACAAGACTATGCAAAGTGGGCCCCAGGAGGCCTaGGGCAGGAACATTCAAACA +
Preference number: 2 (lower is better)
Translates to: SQNECFLGAPWRNKTMQSGPQEA*GRNIQT
Trigger: TGTTTGAATGTTCCTGCCTCAGGCCTCCTGGGGCCC...ACTTTGCATAGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp CAGGAGACAGGCAGGGCACACCCATGGGACAGTAGGAGACAATTCTGTTTCAAATTCTCACTCAAAACCTaGGACTCTGGACAGCCACGG +
Preference number: 2 (lower is better)
Translates to: QETGRAHPWDSRRQFCFKFSLKT*DSGQPR
Trigger: CCGTGGCTGTCCAGAGTCTCAGGTTTTGAGTGAGAA...TTTGAAACAGAATTGTCTCCTACTGTCCCATGGGTGTGCCCTGCCTGTCTCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR GCA 90 bp CTGCATCATCATTTAAGTCTCAGTGGAGGAGACATGTTCCTCAATGCTGGACAAGAGGGGGTGGCCCTCTaGATCCTGAGCAGCCAATCC +
Preference number: 2 (lower is better)
Translates to: LHHHLSLSGGDMFLNAGQEGVAL*ILSSQS
Trigger: GGATTGGCTGCTCAGGATGCAGAGGGCCACCCCCTC...TTGTCCAGCATTGAGGAACATGTCTCCTCCACTGAGACTTAAATGATGATGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp GCCCAAGAATGTATTCCATTCTGGGTATATAATCAAGTCAAACTGGTGACAGGACAGGACCACGCAGTGTaGGCCCCAGGAGGCCTGAGG +
Preference number: 2 (lower is better)
Translates to: AQECIPFWVYNQVKLVTGQDHAV*APGGLR
Trigger: CCTCAGGCCTCCTGGGGCCCACACTGCGTGGTCCTG...TCCTGTCACCAGTTTGACTTGATTATATACCCAGAATGGAATACATTCTTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGGACTGGCAAGGGGGCTaGAGAGACGGCTCAGCAGTG +
Preference number: 2 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLDWQGG*RDGSAV
Trigger: CACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAGTC...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp GTAGTTATAACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTGCTTCAGCGTGGGATTCTCCCACCTaGGCCATAGCCTCAGGACTC +
Preference number: 2 (lower is better)
Translates to: VVITLRKQPGFCSPRASAWDSPT*AIASGL
Trigger: GAGTCCTGAGGCTATGGCTCAGGTGGGAGAATCCCA...CGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp CAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTGTGTTTCAGACTGACTaGCAAGGGGGCTGGAGAGAC +
Preference number: 2 (lower is better)
Translates to: QLESVSTERMDLRRCLCAVFQTD*QGGWRD
Trigger: GTCTCTCCAGCCCCCTTGCCAGTCAGTCTGAAACAC...AGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp GCCAAGCCAGCCTCAGCTGAAGAAATCCTTGAACTTCTGATTCTCTaGACTGTGCCACTTGGGTTTTATGCCACGCTGCGGGTTTGTTCA +
Preference number: 2 (lower is better)
Translates to: AKPASAEEILELLIL*TVPLGFYATLRVCS
Trigger: TGAACAAACCCGCAGCGTGGCATAAAACCCAAGTGGCACAGTCAAGAGAATCAGAAGTTCAAGGATTTCTTCAGCTGAGGCTGGCTTGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp CAAATTTTCGTTAGAAAGCCAGATTGTGAGCTTCTCAGAGTGCCACACATTTGGCCTCCCTTCCACTGCTaGGGAAAAGCCTCCCCAGGA +
Preference number: 2 (lower is better)
Translates to: QIFVRKPDCELLRVPHIWPPFHC*GKASPG
Trigger: TCCTGGGGAGGCTTTTCCTCAGCAGTGGAAGGGAGG...CCAAATGTGTGGCACTCTGAGAAGCTCACAATCTGGCTTTCTAACGAAAATTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp AGCAAGGCCACACCCCCTAAACCTCCCCAAACAGTGCTACCACCTAGGGTCCAAATTCCTTACTTATCATaGGCTGCTAGTGTTTCAGAC +
Preference number: 2 (lower is better)
Translates to: SKATPPKPPQTVLPPRVQIPYLS*AASVSD
Trigger: GTCTGAAACACTAGCAGCTCATGATAAGTAAGGAAT...TTGGACCCTAGGTGGTAGCACTGTTTGGGGAGGTTTAGGGGGTGTGGCCTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp AGCAAGGCCACACCCCCTAAACCTCCCCAAACAGTGCTACCACCTAGGGTCCAAATGCACAGAGCTAAGTaGATGTTCCAAAGACTTCAA +
Preference number: 2 (lower is better)
Translates to: SKATPPKPPQTVLPPRVQMHRAK*MFQRLQ
Trigger: TTGAAGTCTTTGGAACATTCACTTAGCTCTGTGCAT...TTGGACCCTAGGTGGTAGCACTGTTTGGGGAGGTTTAGGGGGTGTGGCCTTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCAGCCCCGACAGGCACATaGACTTATGTGCACACATCT +
Preference number: 2 (lower is better)
Translates to: LESVSTERMDLRRCLCASAPTGT*TYVHTS
Trigger: AGATGTGTGCACATAAGTGCATGTGCCTGTCGGGGC...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCACAGCGAGAGCTCACATaGCCAACCATGAGCAGGAAA +
Preference number: 2 (lower is better)
Translates to: LESVSTERMDLRRCLCASQRELT*PTMSRK
Trigger: TTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTG...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp GGCATGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGTCCTATCCTTCCATTTaGCTCACTGCTTTTGTTCTT +
Preference number: 2 (lower is better)
Translates to: GMAADQRELTCPTMSRKQSYPSI*LTAFVL
Trigger: AAGAACAAAAGCAGTGAGCCAAATGGAAGGATAGGA...CTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp CCGGAAGGACTCAGGCTCTCACTCACAGCATACCTCGGGCTTTCTTaGTGGTACCATGCAGGTCAGTCACAATTATTAGATTACCACCTT +
Preference number: 2 (lower is better)
Translates to: PEGLRLSLTAYLGLS*WYHAGQSQLLDYHL
Trigger: AAGGTGGTAATCTAATAATTGTGACTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTATGCTGTGAGTGAGAGCCTGAGTCCTTCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp ATGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGAGAGATCATTTCCAGTTCTaGGATGGTAAGAGAACCAAG +
Preference number: 2 (lower is better)
Translates to: MAADQRELTCPTMSRKQRDHFQF*DGKRTK
Trigger: CTTGGTTCTCTTACCATCTCAGAACTGGAAATGATC...TCTCTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp CAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCACATGCCCAACCATaGGCAGGAAACAGAGAGCTA +
Preference number: 2 (lower is better)
Translates to: QLESVSTERMDLRRCLCASHAQP*AGNREL
Trigger: TAGCTCTCTGTTTCCTGCTCATGGTTGGGCATGTGA...AGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp CTGCATCATCATTTAAGTCTCAGTGGAGGAGACATGTTCCTCAATGCTGGACAAGGCAGGGCACACCCATaGGACAGTAGGAGACAATTC +
Preference number: 2 (lower is better)
Translates to: LHHHLSLSGGDMFLNAGQGRAHP*DSRRQF
Trigger: GAATTGTCTCCTACTGTCCCATGGGTGTGCCCTGCC...TTGTCCAGCATTGAGGAACATGTCTCCTCCACTGAGACTTAAATGATGATGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp AGCAGATTAAACCATCAGCAAAGGAAGACTCACCAGTCCCTGGCTCTGACTCGTACTAAGAAAACAGCCTaGTTTCTGTTCACCCCGTGC +
Preference number: 2 (lower is better)
Translates to: SRLNHQQRKTHQSLALTRTKKTA*FLFTPC
Trigger: GCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGT...ACGAGTCAGAGCCAGGGACTGGTGAGTCTTCCTTTGCTGATGGTTTAATCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp CGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACAACAGATGTAGAACAGTTAAAGAAGCTGTaGCTCTCCTCACCACACTTG +
Preference number: 2 (lower is better)
Translates to: RRLEGKMRGCMGSTTDVEQLKKL*LSSPHL
Trigger: CAAGTGTGGTGAGGAGAGTCACAGCTTCTTTAACTG...TTCTACATCTGTTGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp CATCCCACCTTTGTGCCGGGGTACTGTTTGAAACTAAAATATGCCAGTCACAAAAGCCAATCCTGCTGGTaGTACCTAGGAGCTTCAAGG +
Preference number: 2 (lower is better)
Translates to: HPTFVPGYCLKLKYASHKSQSCW*YLGASR
Trigger: CCTTGAAGCTCCTAGGTATCACCAGCAGGATTGGCT...TTTGTGACTGGCATATTTTAGTTTCAAACAGTACCCCGGCACAAAGGTGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp GTCAAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTGCCTGGTACAGCTATGGATCCCCATAACATaGGGGATTAGAACAAATCCC +
Preference number: 2 (lower is better)
Translates to: VKLVTGMIRLNYGCLVQLWIPIT*GIRTNP
Trigger: GGGATTTGTTCTAATCCCTCATGTTATGGGGATCCA...TAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp GTAGTTATAACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTGCTTCAGCGTTCCCTCATGGGCTGTaGCATACATGTACCCACACA +
Preference number: 2 (lower is better)
Translates to: VVITLRKQPGFCSPRASAFPHGL*HTCTHT
Trigger: TGTGTGGGTACATGTATGTCACAGCCCATGAGGGAA...CGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp CGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACAACAGATGTAGAACTAAGAAAGACTTGGTaGAAGCTAGTACCCGGAAGG +
Preference number: 2 (lower is better)
Translates to: RRLEGKMRGCMGSTTDVELRKTW*KLVPGR
Trigger: CCTTCCGGGTACTAGCTTGCACCAAGTCTTTCTTAG...TTCTACATCTGTTGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp CCTGCATCATCATTTAAGTCTCAGTGGAGGAGACATGTTCCTCAATGCTGGACACTCGGGCTTTCTTTGTaGTACCATGCAGGTCAGTCA +
Preference number: 2 (lower is better)
Translates to: PASSFKSQWRRHVPQCWTLGLSL*YHAGQS
Trigger: TGACTGACCTGCATGGTACCACAAAGAAAGCCCGAG...TGTCCAGCATTGAGGAACATGTCTCCTCCACTGAGACTTAAATGATGATGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp CAGGAGACAGGCAGGGCACACCCATGGGACAGTAGGAGACAATTCTGTTTCAAACTCTGCAGCCTGAGCTaGCAATCAATATACCTAAAA +
Preference number: 2 (lower is better)
Translates to: QETGRAHPWDSRRQFCFKLCSLS*QSIYLK
Trigger: TTTTAGGTATATTGATTGCCAGCTCAGGCTGCAGAG...TTTGAAACAGAATTGTCTCCTACTGTCCCATGGGTGTGCCCTGCCTGTCTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp ATGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGAGACCAAAGACTTCAATGTaGGCCTTTTATTTTCTGCAG +
Preference number: 2 (lower is better)
Translates to: MAADQRELTCPTMSRKQRPKTSM*AFYFLQ
Trigger: CTGCAGAAAATAAAAGGCCCACATTGAAGTCTTTGG...TCTCTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp TCACCTGCGGAACCATCTCCCCAGCTCCTTAGTCTTACTGTAGATTaGTACTGTGCCACCAGAATGCCTTCTAAGTTGTGTGGTTTCATT +
Preference number: 2 (lower is better)
Translates to: SPAEPSPQLLSLTVD*YCATRMPSKLCGFI
Trigger: AATGAAACCACACAACTTAGAAGGCATTCTGGTGGCACAGTACAAATCTACAGTAAGACTAAGGAGCTGGGGAGATGGTTCCGCAGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp CATCCCACCTTTGTGCCGGGGTACTGTTTGAAACTAAAATATGCCAGTCACAAATGTTTTAAGCTCTTCTaGGGTGAGCGGGTCTGGACT +
Preference number: 2 (lower is better)
Translates to: HPTFVPGYCLKLKYASHKCFKLF*GERVWT
Trigger: AGTCCAGACCCGCTCACCTCAGAAGAGCTTAAAACA...TTTGTGACTGGCATATTTTAGTTTCAAACAGTACCCCGGCACAAAGGTGGGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR TCA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGGATATTGTTGCCCACTaGAACCTATCAAGCTGGGCC +
Preference number: 2 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLDIVAH*NLSSWA
Trigger: GGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATC...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp AGCAGATTAAACCATCAGCAAAGGAAGACTCACCAGTCCCTGGCTCTGACTCGTAAAAACATGACAATATaGACGAGGAACAGCGGAGAG +
Preference number: 2 (lower is better)
Translates to: SRLNHQQRKTHQSLALTRKNMTI*TRNSGE
Trigger: CTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTT...ACGAGTCAGAGCCAGGGACTGGTGAGTCTTCCTTTGCTGATGGTTTAATCTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp GTGCCATCACAGAAAGAAAAACATGACAATATGAACGAGGAACAGCGGAGAGTTGCCACTTGGGTTTTATaGCACGCTGCGGGTTTGTTC +
Preference number: 2 (lower is better)
Translates to: VPSQKEKHDNMNEEQRRVATWVL*HAAGLF
Trigger: GAACAAACCCGCAGCGTGGCATAAAACCCAAGTGGC...AACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAACCACATCCCCAGTGCTaGGACACAGGTGCACATTGC +
Preference number: 2 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQPHPQC*DTGAHC
Trigger: GCAATGTGCACCTGTGTCCCAGCACTGGGGATGTGG...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGGTTTCCCATGGATCTTaGTCCCACCTCAGAATCCCA +
Preference number: 2 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLVSHGS*SHLRIP
Trigger: TGGGATTCTGAGGTGGGACCAAGATCCATGGGAAAC...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp CCAAGAAACCCAGAAGAGCACCTGGGAAAAATCTTCTTATCCAAATaGCTAAAATGTGCTGCATGCAGCTACAAATGTGCCCACCTGTGC +
Preference number: 2 (lower is better)
Translates to: PRNPEEHLGKIFLSK*LKCAACSYKCAHLC
Trigger: GCACAGGTGGGCACATTTGTAGCTGCATGCAGCACATTTTAGCAATTTGGATAAGAAGATTTTTCCCAGGTGCTCTTCTGGGTTTCTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp ACCAGAATGCCTTCTAAGTTGTGTGGTTTCATTACACTATTCCTTACTTATCATGAGACGGCTCAGCAGTaGGATCACCTGCTGCTCCTC +
Preference number: 2 (lower is better)
Translates to: TRMPSKLCGFITLFLTYHETAQQ*DHLLLL
Trigger: GAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCTC...ATGATAAGTAAGGAATAGTGTAATGAAACCACACAACTTAGAAGGCATTCTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp CGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACAACAGATGTAGAAAAAACAAATGTCAGCTaGAAATGGGCAGGTGTCAAC +
Preference number: 2 (lower is better)
Translates to: RRLEGKMRGCMGSTTDVEKTNVS*KWAGVN
Trigger: GTTGACACCTGCCCATTTCCAGCTGACATTTGTTTT...TTCTACATCTGTTGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACG
46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CCA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCAAATCAAAGACTGGGCTaGAGAGATAATTTAGTGGGG +
Preference number: 2 (lower is better)
Translates to: LESVSTERMDLRRCLCASNQRLG*RDNLVG
Trigger: CCCCACTAAATTATCTCTCCAGCCCAGTCTTTGATT...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp GACCCACTTTCGATTAGAAAGGCTGTGCAGACAGGAGTAGCTGACTaGAGCTTGCACTGCACAAGTGTAGTTATAACACTAAGAAAACAG +
Preference number: 2 (lower is better)
Translates to: DPLSIRKAVQTGVAD*SLHCTSVVITLRKQ
Trigger: CTGTTTTCTTAGTGTTATAACTACACTTGTGCAGTGCAAGCTCAAGTCAGCTACTCCTGTCTGCACAGCCTTTCTAATCGAAAGTGGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp TCTCAAAATAAGAGCAGGCAATATTCTCAATATCAGATGCAGATATaGTTGCCCACTGAAACCTATCAAGCTGGGCCTCCGCAGACCACA +
Preference number: 2 (lower is better)
Translates to: SQNKSRQYSQYQMQI*LPTETYQAGPPQTT
Trigger: TGTGGTCTGCGGAGGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATATTGAGAATATTGCCTGCTCTTATTTTGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp ATCTTTCATCTACGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACAGATCTGTTGAAGACTTaGTCTGACCAAGAAAGAGCT +
Preference number: 2 (lower is better)
Translates to: IFHLRRLEGKMRGCMGSTDLLKT*SDQERA
Trigger: AGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATC...TGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACGTAGATGAAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR GCA 90 bp TTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGAGAGTGGACACAGGTGCACATTaGCATGCCTGGCTTTTATAT +
Preference number: 2 (lower is better)
Translates to: LIMPGRKKLDICRDNLRVDTGAH*HAWLLY
Trigger: ATATAAAAGCCAGGCATGGCAATGTGCACCTGTGTC...CACTCTCAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGCACCAAACCCATCTCTaGACTTTTTGCAAACACCCA +
Preference number: 2 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLHQTHL*TFCKHP
Trigger: TGGGTGTTTGCAAAAAGTGCAGAGATGGGTTTGGTG...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAACTAGCAGGTTTCCCATaGATCTTGGTCCCACCTCAG +
Preference number: 2 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQLAGFP*ILVPPQ
Trigger: CTGAGGTGGGACCAAGATCCATGGGAAACCTGCTAG...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp GTGCCATCACAGAAAGAAAAACATGACAATATGAACGAGGAACAGCGGAGAGTTATGGTCCAAAGCTTTTaGAACCTCAAAGCTTGCCCT +
Preference number: 2 (lower is better)
Translates to: VPSQKEKHDNMNEEQRRVMVQSF*NLKACP
Trigger: AGGGCAAGCTTTGAGGTTTCAAAAGCTTTGGACCAT...AACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp GTGCCATCACAGAAAGAAAAACATGACAATATGAACGAGGAACAGCGGAGAGTTGCACATGCACTTATGTaGACACATCTACAGACAGGT +
Preference number: 2 (lower is better)
Translates to: VPSQKEKHDNMNEEQRRVAHALM*THLQTG
Trigger: ACCTGTCTGTAGATGTGTGCACATAAGTGCATGTGC...AACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCAGTTCAAAGCAGTTATTaGAACAGAATGACCCACTTT +
Preference number: 2 (lower is better)
Translates to: LESVSTERMDLRRCLCASVQSSY*NRMTHF
Trigger: AAAGTGGGTCATTCTGTTCCAATAACTGCTTTGAAC...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGTCTCACAAGAAACCATaGAAACGGCAAGTGAGTTTC +
Preference number: 2 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLSHKKP*KRQVSF
Trigger: GAAACTCACTTGCCGTTTCCATGGTTTCTTGTGAGA...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR TCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAAGCTATAGAAAGAATCTaGGAGGCCATGTGTGGCAGA +
Preference number: 2 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQAIERI*EAMCGR
Trigger: TCTGCCACACATGGCCTCTCAGATTCTTTCTATAGC...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAACTGATTTCCTTGAATTaGCCTCTGGCCTTCCCTCAT +
Preference number: 2 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQLISLN*PLAFPH
Trigger: ATGAGGGAAGGCCAGAGGGCAATTCAAGGAAATCAG...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCACGCATACACAACACATaGACAGGAAATAAATACAAA +
Preference number: 2 (lower is better)
Translates to: LESVSTERMDLRRCLCASRIHNT*TGNKYK
Trigger: TTTGTATTTATTTCCTGTGCATGTGTTGTGTATGCG...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp TTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGAGAGTGAGAGCTATCAGGAAATaGTCCAAAGCTTTTGAAACC +
Preference number: 2 (lower is better)
Translates to: LIMPGRKKLDICRDNLRVRAIRK*SKAFET
Trigger: GGTTTCAAAAGCTTTGGACCATTTCCTGATAGCTCT...CACTCTCAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAAGCACATTGCCATGCCTaGCTTTTATATGGCTCTTAC +
Preference number: 2 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQAHCHA*LLYGSY
Trigger: GTAAGAGCCATATAAAAGCCAGGCATGGCAATGTGC...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR GCA 90 bp GTGCCATCACAGAAAGAAAAACATGACAATATGAACGAGGAACAGCGGAGAGTTATTCTCAATATCAGATaGAGATATTGTTGCCCACTG +
Preference number: 2 (lower is better)
Translates to: VPSQKEKHDNMNEEQRRVILNIR*RYCCPL
Trigger: CAGTGGGCAACAATATCTGCATCTGATATTGAGAAT...AACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 90 bp TTCAAACCACCTCAACTATGTATAGAGAGACTAATGCATTTCTATTaGAAGAAGCAAAGAACACAAGGTGACTACACATACTTCGATACA +
Preference number: 2 (lower is better)
Translates to: FKPPQLCIERLMHFY*KKQRTQGDYTYFDT
Trigger: TGTATCGAAGTATGTGTAGTCACCTTGTGTTCTTTGCTTCTTCAAATAGAAATGCATTAGTCTCTCTATACATAGTTGAGGTGGTTTGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp GGGCTGGAGAGACGGCTCAGCAGTGAGATCACCTGCTaGTCCTCCAGAGAGCCCTGCTTCAGTTCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: GLERRLSSEITC*SSREPCFSSQH
Trigger: GTGCTGGGAACTGAAGCAGGGCTCTCTGGAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCTCTCCAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp AGGGGGCTGGAGAGACGGCTCAGCAGTGAGATCACCTaGTGCTCCTCCAGAGAGCCCTGCTTCAGTTCCCAG +
Preference number: 3 (lower is better)
Translates to: RGLERRLSSEIT*CSSREPCFSSQ
Trigger: CTGGGAACTGAAGCAGGGCTCTCTGGAGGAGCAGCAGGTGATCTCACTGCTGAGCCGTCTCTCCAGCCCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp CTCCCCAGGACCACGCAGTGTGGGCCCCAGGAGGCCTaGGGCAGGAACATTCAAACAAGGCTCTCCTCAATT +
Preference number: 3 (lower is better)
Translates to: LPRTTQCGPQEA*GRNIQTRLSSI
Trigger: AATTGAGGAGAGCCTTGTTTGAATGTTCCTGCCTCAGGCCTCCTGGGGCCCACACTGCGTGGTCCTGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp GAGCTACCCAGCAGCACGGCGGCAAGGCAGCACGCATaGACTGGGCTGAGCAAAGTCAGAATGAATGCTTCC +
Preference number: 3 (lower is better)
Translates to: ELPSSTAARQHA*TGLSKVRMNAS
Trigger: GGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCATGCGTGCTGCCTTGCCGCCGTGCTGCTGGGTAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp ACCCAGCAGCACGGCGGCAAGGCAGCACGCATGCACTaGGCTGAGCAAAGTCAGAATGAATGCTTCCTGGGA +
Preference number: 3 (lower is better)
Translates to: TQQHGGKAARMH*AEQSQNECFLG
Trigger: TCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCATGCGTGCTGCCTTGCCGCCGTGCTGCTGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp AAACAAACACTGAGAGCAGGTCGCTGGGCAGCTCCCTaGATGCCTCCACCCACCGGCACTCGAATCAATTCC +
Preference number: 3 (lower is better)
Translates to: KQTLRAGRWAAP*MPPPTGTRINS
Trigger: GGAATTGATTCGAGTGCCGGTGGGTGGAGGCATGCAGGGAGCTGCCCAGCGACCTGCTCTCAGTGTTTGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp GAGCTGCTAGTGTTTCAGACTGACTGGCAAGGGGGCTaGAGAGACGGCTCAGCAGTGAGATCACCTGCTGCT +
Preference number: 3 (lower is better)
Translates to: ELLVFQTDWQGG*RDGSAVRSPAA
Trigger: AGCAGCAGGTGATCTCACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAGTCAGTCTGAAACACTAGCAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp GCACCAGGCATGGCAGCTGATCAGCGAGAGCTCACATaGCCAACCATGAGCAGGAAACAGAGAGCTATCAGG +
Preference number: 3 (lower is better)
Translates to: APGMAADQRELT*PTMSRKQRAIR
Trigger: CCTGATAGCTCTCTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCATGCCTGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp GGGGCTGGGAGGAGGAACTCAAGCCGAGAACCAATCTaGGATGCGCAGGAAGACCCTGTCTCAAAGCAAACA +
Preference number: 3 (lower is better)
Translates to: GAGRRNSSREPI*DAQEDPVSKQT
Trigger: TGTTTGCTTTGAGACAGGGTCTTCCTGCGCATCCCAGATTGGTTCTCGGCTTGAGTTCCTCCTCCCAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp AAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTaGCTGGTACAGCTAGCCCCATTGGGGCCAGGAGAC +
Preference number: 3 (lower is better)
Translates to: KLVTGMIRLNYG*LVQLAPLGPGD
Trigger: GTCTCCTGGCCCCAATGGGGCTAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp TATATGGCTCTTACATGGCGCTGGATCCCATCTCAGTaGGCATGTGTAACCTCCGGTGCGCACGCTCACACA +
Preference number: 3 (lower is better)
Translates to: YMALTWRWIPSQ*ACVTSGAHAHT
Trigger: TGTGTGAGCGTGCGCACCGGAGGTTACACATGCGCACTGAGATGGGATCCAGCGCCATGTAAGAGCCATATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp AGCTTGGAGAATTCTGAGCTATACTTCCTCCCATGGTaGCACAGCCAGCCTGTGCCTCCTGCACTTCCTCTG +
Preference number: 3 (lower is better)
Translates to: SLENSELYFLPW*HSQPVPPALPL
Trigger: CAGAGGAAGTGCAGGAGGCACAGGCTGGCTGTGGCACCATGGGAGGAAGTATAGCTCAGAATTCTCCAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp TCAATATACCTAAAACAAACACTGAGAGCAGGTCGCTaGGCAGCTCCCTGCATGCCTCCACCCACCGGCACT +
Preference number: 3 (lower is better)
Translates to: SIYLKQTLRAGR*AAPCMPPPTGT
Trigger: AGTGCCGGTGGGTGGAGGCATGCAGGGAGCTGCCCAGCGACCTGCTCTCAGTGTTTGTTTTAGGTATATTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp AGTCAAACTGGTGACAGGAATGATCAGGCTCAACTATaGCTGCCTGGTACAGCTAGCCCCATTGGGGCCAGG +
Preference number: 3 (lower is better)
Translates to: SQTGDRNDQAQL*LPGTASPIGAR
Trigger: CCTGGCCCCAATGGGGCTAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp ACATCCCCAGTGCTGGGACACAGGTGCACATTGCCATaGCTGGCTTTTATATGGCTCTTACATGGCGCTGGA +
Preference number: 3 (lower is better)
Translates to: TSPVLGHRCTLP*LAFIWLLHGAG
Trigger: TCCAGCGCCATGTAAGAGCCATATAAAAGCCAGGCATGGCAATGTGCACCTGTGTCCCAGCACTGGGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp GGCTGGAGACATGGCTCAGCGGTTAAGAGCACTGACTaGTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAA +
Preference number: 3 (lower is better)
Translates to: GWRHGSAVKSTD*SSRGPEFNSQQ
Trigger: TTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATGTCTCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp GGACACAGGTGCACATTGCCATGCCTGGCTTTTATATaGCTCTTACATGGCGCTGGATCCCATCTCAGTGCG +
Preference number: 3 (lower is better)
Translates to: GHRCTLPCLAFI*LLHGAGSHLSA
Trigger: CGCACTGAGATGGGATCCAGCGCCATGTAAGAGCCATATAAAAGCCAGGCATGGCAATGTGCACCTGTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp TTTGGGAGCTATAGAAAGAATCTGAGAGGCCATGTGTaGCAGACGCACCCTTTGCCACTGAGCCCCAGGGAA +
Preference number: 3 (lower is better)
Translates to: FGSYRKNLRGHV*QTHPLPLSPRE
Trigger: TTCCCTGGGGCTCAGTGGCAAAGGGTGCGTCTGCCACACATGGCCTCTCAGATTCTTTCTATAGCTCCCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp AGTAGCTCACACAAACAATCCCAGCACTTAGGGGGCTaGGAGGAGGAACTCAAGCCGAGAACCAATCTGGGA +
Preference number: 3 (lower is better)
Translates to: SSSHKQSQHLGG*EEELKPRTNLG
Trigger: TCCCAGATTGGTTCTCGGCTTGAGTTCCTCCTCCCAGCCCCCTAAGTGCTGGGATTGTTTGTGTGAGCTACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp ATAACTCCAGTTCCAGGCACCAAATGCCCTATTCTGGCCCCGACAGGCACATGCACTGATTTCCTTGAATaGCCCTCTGGCCTTCCCTCA +
Preference number: 3 (lower is better)
Translates to: ITPVPGTKCPILAPTGTCTDFLE*PSGLPS
Trigger: TGAGGGAAGGCCAGAGGGCAATTCAAGGAAATCAGT...GCATGTGCCTGTCGGGGCCAGAATAGGGCATTTGGTGCCTGGAACTGGAGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp TGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATaGGCAGGAAACAGAGAGCTATCAGGAAATGGTCCA +
Preference number: 3 (lower is better)
Translates to: WQLISESSHAQP*AGNRELSGNGP
Trigger: TGGACCATTTCCTGATAGCTCTCTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp GAGCAAAGTCAGAATGAATGCTTCCTGGGAGCACCCTaGAGAAACAAGACTATGCAAAGTAGAGGGCGGGGG +
Preference number: 3 (lower is better)
Translates to: EQSQNECFLGAP*RNKTMQSRGRG
Trigger: CCCCCGCCCTCTACTTTGCATAGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp CTTACTTATCATGAGCTGCTAGTGTTTCAGACTGACTaGCAAGGGGGCTGGAGAGACGGCTCAGCAGTGAGA +
Preference number: 3 (lower is better)
Translates to: LTYHELLVFQTD*QGGWRDGSAVR
Trigger: TCTCACTGCTGAGCCGTCTCTCCAGCCCCCTTGCCAGTCAGTCTGAAACACTAGCAGCTCATGATAAGTAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp CATGCAGCTACAAATGTGCCCACCTGTGCCGTAGCTTaGAGAATTCTGAGCTATACTTCCTCCCATGGTGCC +
Preference number: 3 (lower is better)
Translates to: HAATNVPTCAVA*RILSYTSSHGA
Trigger: GGCACCATGGGAGGAAGTATAGCTCAGAATTCTCCAAGCTACGGCACAGGTGGGCACATTTGTAGCTGCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp GTCAAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTGCCTGGTACAGCTACTCTCCTCACCACACTaGCACACATCTTCCTCCATC +
Preference number: 3 (lower is better)
Translates to: VKLVTGMIRLNYGCLVQLLSSPH*HTSSSI
Trigger: GATGGAGGAAGATGTGTGCAAGTGTGGTGAGGAGAG...TAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CAA 90 bp CTGCATCATCATTTAAGTCTCAGTGGAGGAGACATGTTCCTCAATGCTGGACAACCTCACACCATAGTCTaGCAGGAGCCACCAGCCCAC +
Preference number: 3 (lower is better)
Translates to: LHHHLSLSGGDMFLNAGQPHTIV*QEPPAH
Trigger: GTGGGCTGGTGGCTCCTGCAAGACTATGGTGTGAGG...TTGTCCAGCATTGAGGAACATGTCTCCTCCACTGAGACTTAAATGATGATGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CAA 90 bp ATGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGAGAAGACAACTGATTTCCTaGAATTGCCCTCTGGCCTTC +
Preference number: 3 (lower is better)
Translates to: MAADQRELTCPTMSRKQRRQLIS*NCPLAF
Trigger: GAAGGCCAGAGGGCAATTCAAGGAAATCAGTTGTCT...TCTCTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp CAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTGGTTTCCCATGGATCTaGGTCCCACCTCAGAATCCC +
Preference number: 3 (lower is better)
Translates to: QLESVSTERMDLRRCLCAGFPWI*VPPQNP
Trigger: GGGATTCTGAGGTGGGACCAAGATCCATGGGAAACC...AGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp CTAACTCAAGAATCGCAGGACTCACTGAGGTACAAGTaGCGCCGCAAAAGCCATCGAAAGGGTGGCGTCTAT +
Preference number: 3 (lower is better)
Translates to: LTQESQDSLRYK*RRKSHRKGGVY
Trigger: ATAGACGCCACCCTTTCGATGGCTTTTGCGGCGTCACTTGTACCTCAGTGAGTCCTGCGATTCTTGAGTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CAA 90 bp GTCAAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTGCCTGGTACAGCTACACCACCTCATCTACTaGGCAACTGTCTCACATGGA +
Preference number: 3 (lower is better)
Translates to: VKLVTGMIRLNYGCLVQLHHLIY*ATVSHG
Trigger: TCCATGTGAGACAGTTGCCAAGTAGATGAGGTGGTG...TAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 72 bp AACTGTCTCACATGGAGATCTGTTGAAGACTTGATCTaGCCAAGAAAGAGCTACCCAGCAGCACGGCGGCAA +
Preference number: 3 (lower is better)
Translates to: NCLTWRSVEDLI*PRKSYPAARRQ
Trigger: TTGCCGCCGTGCTGCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATCTCCATGTGAGACAGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 72 bp TTGGCAACTGTCTCACATGGAGATCTGTTGAAGACTTaGTCTGACCAAGAAAGAGCTACCCAGCAGCACGGC +
Preference number: 3 (lower is better)
Translates to: LATVSHGDLLKT*SDQERATQQHG
Trigger: GCCGTGCTGCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATCTCCATGTGAGACAGTTGCCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 72 bp AGACTGGGCTGGAGAGATAATTTAGTGGGGCCAATCTaGCAACCCAAGTTCAAACTCTGGGACCCACACAGT +
Preference number: 3 (lower is better)
Translates to: RLGWRDNLVGPI*QPKFKLWDPHS
Trigger: ACTGTGTGGGTCCCAGAGTTTGAACTTGGGTTGTCAGATTGGCCCCACTAAATTATCTCTCCAGCCCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp GACAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTaGGGAGATGCCTCTGTGCTTCAGAGTGCACACTGG +
Preference number: 3 (lower is better)
Translates to: DNLRVLVQRGWI*GDASVLQSAHW
Trigger: CCAGTGTGCACTCTGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp ACTCAACCATGTATAACTCCAGTTCCAGGCACCAAATaGCCTATTCTGGCCCCGACAGGCACATGCACTTAT +
Preference number: 3 (lower is better)
Translates to: TQPCITPVPGTK*PILAPTGTCTY
Trigger: ATAAGTGCATGTGCCTGTCGGGGCCAGAATAGGGCATTTGGTGCCTGGAACTGGAGTTATACATGGTTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp GAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATaGCTCTGTGCTTCAGAGTGCACACTGGCTCTTGTA +
Preference number: 3 (lower is better)
Translates to: ESVSTERMDLRR*LCASECTLALV
Trigger: TACAAGAGCCAGTGTGCACTCTGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp GCCTCTTCCAGCCCTGCATCATCATTTAAGTCTCAGTaGAGGAGACATGTTCCTCAATGCTGGACAAGTCGT +
Preference number: 3 (lower is better)
Translates to: ASSSPASSFKSQ*RRHVPQCWTSR
Trigger: ACGACTTGTCCAGCATTGAGGAACATGTCTCCTCCACTGAGACTTAAATGATGATGCAGGGCTGGAAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp GCCAAGGATTCTCTAAGGTCCCTAGCAGGTTTCCCATaGATCTTGGTCCCACCTCAGAATCCCATATACCAA +
Preference number: 3 (lower is better)
Translates to: AKDSLRSLAGFP*ILVPPQNPIYQ
Trigger: TTGGTATATGGGATTCTGAGGTGGGACCAAGATCCATGGGAAACCTGCTAGGGACCTTAGAGAATCCTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp CAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTGGACACAGGTGCACATaGCCATGCCTGGCTTTTATA +
Preference number: 3 (lower is better)
Translates to: QLESVSTERMDLRRCLCAGHRCT*PCLAFI
Trigger: TATAAAAGCCAGGCATGGCAATGTGCACCTGTGTCC...AGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGTGCCACGCTGCGGGTTaGTTCAGGCTACATGGGATT +
Preference number: 3 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLCHAAG*FRLHGI
Trigger: AATCCCATGTAGCCTGAACAAACCCGCAGCGTGGCA...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp AGGGGTCTAGAAGAGAATCCACAGTTAAAGAAGCTGTaGCTCTCCTCACCACACTTGCACACATCTTCCTCC +
Preference number: 3 (lower is better)
Translates to: RGLEENPQLKKL*LSSPHLHTSSS
Trigger: GGAGGAAGATGTGTGCAAGTGTGGTGAGGAGAGTCACAGCTTCTTTAACTGTGGATTCTCTTCTAGACCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 72 bp TGCGGGTTTGTTCAGGCTACATGGGATTCTCCCACCTaGGCCATAGCCTCAGGACTCAATTCCAAAGAAATA +
Preference number: 3 (lower is better)
Translates to: CGFVQATWDSPT*AIASGLNSKEI
Trigger: TATTTCTTTGGAATTGAGTCCTGAGGCTATGGCTCAGGTGGGAGAATCCCATGTAGCCTGAACAAACCCGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp CATAAAGCCATCCAAAAGTCCCTAAGAAAGACTTGGTaGAAGCTAGTACCCGGAAGGACTCAGGCTCTCACT +
Preference number: 3 (lower is better)
Translates to: HKAIQKSLRKTW*KLVPGRTQALT
Trigger: AGTGAGAGCCTGAGTCCTTCCGGGTACTAGCTTGCACCAAGTCTTTCTTAGGGACTTTTGGATGGCTTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp ACTTCTGATTCTCTTGACTGTGCCACTTGGGTTTTATaGCACGCTGCGGGTTTGTTCAGGCTACATGGGATT +
Preference number: 3 (lower is better)
Translates to: TSDSLDCATWVL*HAAGLFRLHGI
Trigger: AATCCCATGTAGCCTGAACAAACCCGCAGCGTGGCATAAAACCCAAGTGGCACAGTCAAGAGAATCAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp AACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTaGTTCAGCGGCAACCAACAAGATCCTGTACTTCAG +
Preference number: 3 (lower is better)
Translates to: NTKKTAWFLFTP*FSGNQQDPVLQ
Trigger: CTGAAGTACAGGATCTTGTTGGTTGCCGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp AAATGTGCTGCATGCAGCTACAAATGTGCCCACCTGTaGCGTAGCTTGGAGAATTCTGAGCTATACTTCCTC +
Preference number: 3 (lower is better)
Translates to: KCAACSYKCAHL*RSLENSELYFL
Trigger: GAGGAAGTATAGCTCAGAATTCTCCAAGCTACGGCACAGGTGGGCACATTTGTAGCTGCATGCAGCACATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp TGCACTGGGCTGAGCAAAGTCAGAATGAATGCTTCCTaGGAGCACCCTGGAGAAACAAGACTATGCAAAGTA +
Preference number: 3 (lower is better)
Translates to: CTGLSKVRMNAS*EHPGETRLCKV
Trigger: TACTTTGCATAGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTGCTCAGCCCAGTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CAA 90 bp CAGGAGACAGGCAGGGCACACCCATGGGACAGTAGGAGACAATTCTGTTTCAAAGTCACAAAGCTGGATTaGGGAGCTTTAAAACATGAA +
Preference number: 3 (lower is better)
Translates to: QETGRAHPWDSRRQFCFKVTKLD*GALKHE
Trigger: TTCATGTTTTAAAGCTCCCAAATCCAGCTTTGTGAC...TTTGAAACAGAATTGTCTCCTACTGTCCCATGGGTGTGCCCTGCCTGTCTCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CAA 90 bp AGCAGATTAAACCATCAGCAAAGGAAGACTCACCAGTCCCTGGCTCTGACTCGTTTCCTATCCTTCCATTaGGCTCACTGCTTTTGTTCT +
Preference number: 3 (lower is better)
Translates to: SRLNHQQRKTHQSLALTRFLSFH*AHCFCS
Trigger: AGAACAAAAGCAGTGAGCCAAATGGAAGGATAGGAA...ACGAGTCAGAGCCAGGGACTGGTGAGTCTTCCTTTGCTGATGGTTTAATCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp GCAGGCAATATTCTCAATATCAGATGCAGATATTGTTaGCCACTGAAACCTATCAAGCTGGGCCTCCGCAGA +
Preference number: 3 (lower is better)
Translates to: AGNILNIRCRYC*PLKPIKLGLRR
Trigger: TCTGCGGAGGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATATTGAGAATATTGCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp TTACATAAAGCCATCCAAAAGTCCCTAAGAAAGACTTaGTGCAAGCTAGTACCCGGAAGGACTCAGGCTCTC +
Preference number: 3 (lower is better)
Translates to: LHKAIQKSLRKT*CKLVPGRTQAL
Trigger: GAGAGCCTGAGTCCTTCCGGGTACTAGCTTGCACCAAGTCTTTCTTAGGGACTTTTGGATGGCTTTATGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp CTGCACAAGTGTAGTTATAACACTAAGAAAACAGCCTaGTTTCTGTTCACCCCGTGCTTCAGCGGCAACCAA +
Preference number: 3 (lower is better)
Translates to: LHKCSYNTKKTA*FLFTPCFSGNQ
Trigger: TTGGTTGCCGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTACACTTGTGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp GCCCAAGAATGTATTCCATTCTGGGTATATAATCAAGTCAAACTGGTGACAGGATACCTCGGGCTTTCTTaGTGGTACCATGCAGGTCAG +
Preference number: 3 (lower is better)
Translates to: AQECIPFWVYNQVKLVTGYLGLS*WYHAGQ
Trigger: CTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTA...TCCTGTCACCAGTTTGACTTGATTATATACCCAGAATGGAATACATTCTTGGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR-3UTR CAA 90 bp TTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGAGAGTGGTAGCTGACTTGAGCTaGCACTGCACAAGTGTAGTT +
Preference number: 3 (lower is better)
Translates to: LIMPGRKKLDICRDNLRVVADLS*HCTSVV
Trigger: AACTACACTTGTGCAGTGCAAGCTCAAGTCAGCTAC...CACTCTCAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp TCATCTACTTGGCAACTGTCTCACATGGAGATCTGTTaGAGACTTGATCTGACCAAGAAAGAGCTACCCAGC +
Preference number: 3 (lower is better)
Translates to: SSTWQLSHMEIC*RLDLTKKELPS
Trigger: GCTGGGTAGCTCTTTCTTGGTCAGATCAAGTCTTCAACAGATCTCCATGTGAGACAGTTGCCAAGTAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR TCA 72 bp ATATTCTCAATATCAGATGCAGATATTGTTGCCCACTaGAACCTATCAAGCTGGGCCTCCGCAGACCACATC +
Preference number: 3 (lower is better)
Translates to: IFSISDADIVAH*NLSSWASADHI
Trigger: GATGTGGTCTGCGGAGGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATATTGAGAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp GCTGTGCAGACAGGAGTAGCTGACTTGAGCTTGCACTaGACAAGTGTAGTTATAACACTAAGAAAACAGCCT +
Preference number: 3 (lower is better)
Translates to: AVQTGVADLSLH*TSVVITLRKQP
Trigger: AGGCTGTTTTCTTAGTGTTATAACTACACTTGTGCAGTGCAAGCTCAAGTCAGCTACTCCTGTCTGCACAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp CCTGGGAAAAATCTTCTTATCCAAATTGCTAAAATGTaGTGCATGCAGCTACAAATGTGCCCACCTGTGCCG +
Preference number: 3 (lower is better)
Translates to: PGKNLLIQIAKM*CMQLQMCPPVP
Trigger: CGGCACAGGTGGGCACATTTGTAGCTGCATGCAGCACATTTTAGCAATTTGGATAAGAAGATTTTTCCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CCA 72 bp AGGCTCTCACTCACAGCATACCTCGGGCTTTCTTTGTaGTACCATGCAGGTCAGTCACAATTATTAGATTAC +
Preference number: 3 (lower is better)
Translates to: RLSLTAYLGLSL*YHAGQSQLLDY
Trigger: GTAATCTAATAATTGTGACTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTATGCTGTGAGTGAGAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CCA 72 bp CATGACCAGTACAACTTAGAGAAGGACAGGCTCATTTaGGTTTATGGATCCAGAGAGATTAGAGTCTGTGCC +
Preference number: 3 (lower is better)
Translates to: HDQYNLEKDRLI*VYGSREIRVCA
Trigger: GGCACAGACTCTAATCTCTCTGGATCCATAAACCCAAATGAGCCTGTCCTTCTCTAAGTTGTACTGGTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp GTAGTTATAACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTGCTTCAGCGAGTCTTACTGTAGATTaGTACTGTGCCACCAGAATG +
Preference number: 3 (lower is better)
Translates to: VVITLRKQPGFCSPRASASLTVD*YCATRM
Trigger: CATTCTGGTGGCACAGTACAAATCTACAGTAAGACT...CGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp GTAGTTATAACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTGCTTCAGCGCTTGCTAGTCTAAAATaGTCAAGTTTAGGGCTGGAG +
Preference number: 3 (lower is better)
Translates to: VVITLRKQPGFCSPRASALASLK*SSLGLE
Trigger: CTCCAGCCCTAAACTTGACAATTTTAGACTAGCAAG...CGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp CAACTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTTCTTCTTCCATTTGTaGTTTATTCTGTGCCAAGCC +
Preference number: 3 (lower is better)
Translates to: QLESVSTERMDLRRCLCAFFFHL*FILCQA
Trigger: GGCTTGGCACAGAATAAACAACAAATGGAAGAAGAA...AGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp AGAACTCTTCTCACAAGAAACCATGGAAACGGCAAGTaGGTTTCTTGCAGGCTTAAGGAATTTCAGCTGCCA +
Preference number: 3 (lower is better)
Translates to: RTLLTRNHGNGK*VSCRLKEFQLP
Trigger: TGGCAGCTGAAATTCCTTAAGCCTGCAAGAAACTCACTTGCCGTTTCCATGGTTTCTTGTGAGAAGAGTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp ACTCACAGCATACCTCGGGCTTTCTTTGTGGTACCATaGAGGTCAGTCACAATTATTAGATTACCACCTTCA +
Preference number: 3 (lower is better)
Translates to: THSIPRAFFVVP*RSVTIIRLPPS
Trigger: TGAAGGTGGTAATCTAATAATTGTGACTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTATGCTGTGAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp TGTATGCACAGACAGGGAGAAAACGGGCTCGGTAGATaGAACAGAATAACAGAAGCAATCACAAAGAAGACT +
Preference number: 3 (lower is better)
Translates to: CMHRQGENGLGR*NRITEAITKKT
Trigger: AGTCTTCTTTGTGATTGCTTCTGTTATTCTGTTGCATCTACCGAGCCCGTTTTCTCCCTGTCTGTGCATACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR GCA 72 bp GTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTaGAGAGACAACTTGAGAGTGTTAGTACAGAGAGGA +
Preference number: 3 (lower is better)
Translates to: VLIMPGRKKLDI*RDNLRVLVQRG
Trigger: TCCTCTCTGTACTAACACTCTCAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCAAGAATGCCTTCTAAGTaGTGTGGTTTCATTACACTA +
Preference number: 3 (lower is better)
Translates to: LESVSTERMDLRRCLCASRMPSK*CGFITL
Trigger: TAGTGTAATGAAACCACACAACTTAGAAGGCATTCT...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp GTAGTTATAACACTAAGAAAACAGCCTGGTTTCTGTTCACCCCGTGCTTCAGCGTACTCTTTGTATTTGTaGTTCACATGCACAGAGCTA +
Preference number: 3 (lower is better)
Translates to: VVITLRKQPGFCSPRASAYSLYL*FTCTEL
Trigger: TAGCTCTGTGCATGTGAACAACAAATACAAAGAGTA...CGCTGAAGCACGGGGTGAACAGAAACCAGGCTGTTTTCTTAGTGTTATAACTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGGCCATTTTTAATACCTaGCATGGATGTTCCTATCCT +
Preference number: 3 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLAIFNT*HGCSYP
Trigger: AGGATAGGAACATCCATGCAAGGTATTAAAAATGGC...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp GTGCCATCACAGAAAGAAAAACATGACAATATGAACGAGGAACAGCGGAGAGTTTATGTGTGGGGGATATaGAATTCAAACCACCTCAAC +
Preference number: 3 (lower is better)
Translates to: VPSQKEKHDNMNEEQRRVYVWGI*NSNHLN
Trigger: GTTGAGGTGGTTTGAATTCAATATCCCCCACACATA...AACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR-3UTR CAA 90 bp ACTGTCTTAATTATGCCCGGCAGAAAGAAGCTAGACATCTGCAGAGACAACTTGTATCAGATGCAGATATaGTTGCCCACTGAAACCTAT +
Preference number: 3 (lower is better)
Translates to: TVLIMPGRKKLDICRDNLYQMQI*LPTETY
Trigger: ATAGGTTTCAGTGGGCAACAATATCTGCATCTGATA...CAAGTTGTCTCTGCAGATGTCTAGCTTCTTTCTGCCGGGCATAATTAAGACAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp AGTCTGTGCCATCACAGAAAGAAAAACATGACAATATaGACGAGGAACAGCGGAGAGTTCACATCTCAAAAT +
Preference number: 3 (lower is better)
Translates to: SLCHHRKKNMTI*TRNSGEFTSQN
Trigger: ATTTTGAGATGTGAACTCTCCGCTGTTCCTCGTTCATATTGTCATGTTTTTCTTTCTGTGATGGCACAGACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp TTATTTATTTATTTGTGGGTGTTGGGCATGCTCCATTaGACCATCTCACCAAACCCATCTCTGCACTTTTTG +
Preference number: 3 (lower is better)
Translates to: LFIYLWVLGMLH*TISPNPSLHFL
Trigger: CAAAAAGTGCAGAGATGGGTTTGGTGAGATGGTTCAATGGAGCATGCCCAACACCCACAAATAAATAAATAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR GCA 72 bp CTCAAAATAAGAGCAGGCAATATTCTCAATATCAGATaGAGATATTGTTGCCCACTGAAACCTATCAAGCTG +
Preference number: 3 (lower is better)
Translates to: LKIRAGNILNIR*RYCCPLKPIKL
Trigger: CAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATATTGAGAATATTGCCTGCTCTTATTTTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR TCA 72 bp AGTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTaGATTCAAACCACCTCAACTATGTATAGAGAGACT +
Preference number: 3 (lower is better)
Translates to: SIQRPKNMCGGY*IQTTSTMYRET
Trigger: AGTCTCTCTATACATAGTTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR TCA 90 bp TGGGCCTCCGCAGACCACATCGCTCTCAGCACTGTCTTCCAAGAACCTACTGGGGCCCCGTGCGGATATTaGTGCAGTCCACGGGCATGT +
Preference number: 4 (lower is better)
Translates to: WASADHIALSTVFQEPTGAPCGY*CSPRAC
Trigger: ACATGCCCGTGGACTGCATCAATATCCGCACGGGGC...CCCAGTAGGTTCTTGGAAGACAGTGCTGAGAGCGATGTGGTCTGCGGAGGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp ATACCTAAAACAAACACTGAGAGCAGGTCGCTGGGCAGCTCCCTGCATGCCTCCCTGCCCCGGCGAGCATaGCCAGAGCCAGGTCACTGT +
Preference number: 4 (lower is better)
Translates to: IPKTNTESRSLGSSLHASLPRRA*PEPGHC
Trigger: ACAGTGACCTGGCTCTGGGCATGCTCGCCGGGGCAG...GGAGGCATGCAGGGAGCTGCCCAGCGACCTGCTCTCAGTGTTTGTTTTAGGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR GCA 90 bp GTCAAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTGCCTGGTACAGCTAGGCCATGCCGGTGGCTaGCCCGGCGAGCATGCCCAG +
Preference number: 4 (lower is better)
Translates to: VKLVTGMIRLNYGCLVQLGHAGG*PGEHAQ
Trigger: CTGGGCATGCTCGCCGGGGCAGCCACCGGCATGGCC...TAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR GCA 90 bp GGCATGGCAGCTGATCAGCGAGAGCTCACATGCCCAACCATGAGCAGGAAACAGCGGGGACGCGGCCACTaGAGTCTCTTCAGACAGGAT +
Preference number: 4 (lower is better)
Translates to: GMAADQRELTCPTMSRKQRGRGH*SLFRQD
Trigger: ATCCTGTCTGAAGAGACTGCAGTGGCCGCGTCCCCG...CTGTTTCCTGCTCATGGTTGGGCATGTGAGCTCTCGCTGATCAGCTGCCATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp ATCTTTCATCTACGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACAGAGAGCCCAGGGCCATaGCGGTGGCTGCCCCGGCGA +
Preference number: 4 (lower is better)
Translates to: IFHLRRLEGKMRGCMGSTESPGP*RWLPRR
Trigger: TCGCCGGGGCAGCCACCGGCATGGCCCTGGGCTCTC...TGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACGTAGATGAAAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp CCTGCATCATCATTTAAGTCTCAGTGGAGGAGACATGTTCCTCAATGCTGGACACCAGGGCCATGCCGGTaGCTGCCCCGGCGAGCATGC +
Preference number: 4 (lower is better)
Translates to: PASSFKSQWRRHVPQCWTPGPCR*LPRRAC
Trigger: GCATGCTCGCCGGGGCAGCCACCGGCATGGCCCTGG...TGTCCAGCATTGAGGAACATGTCTCCTCCACTGAGACTTAAATGATGATGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CAA 72 bp GCTACTGTGGGCACTAATGACCTAAGCCAGGCCTTCTaGGCAAGGGACGATCTGAGGGAGCCTCAGGCCTTC +
Preference number: 4 (lower is better)
Translates to: ATVGTNDLSQAF*ARDDLREPQAF
Trigger: GAAGGCCTGAGGCTCCCTCAGATCGTCCCTTGCCAAGAAGGCCTGGCTTAGGTCATTAGTGCCCACAGTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR GCA 90 bp GTCAAACTGGTGACAGGAATGATCAGGCTCAACTATGGCTGCCTGGTACAGCTATGGTGTAGCATAGGCTaGGTAGGGAGGCGGGGACGC +
Preference number: 4 (lower is better)
Translates to: VKLVTGMIRLNYGCLVQLWCSIG*VGRRGR
Trigger: GCGTCCCCGCCTCCCTACGCAGCCTATGCTACACCA...TAGCTGTACCAGGCAGCCATAGTTGAGCCTGATCATTCCTGTCACCAGTTTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp AGCAAGGCCACACCCCCTAAACCTCCCCAAACAGTGCTACCACCTAGGGTCCAACAGTCCACGGGCATGTaGACCTTATCCTCTATGCTC +
Preference number: 4 (lower is better)
Translates to: SKATPPKPPQTVLPPRVQQSTGM*TLSSML
Trigger: GAGCATAGAGGATAAGGTCCACATGCCCGTGGACTG...TTGGACCCTAGGTGGTAGCACTGTTTGGGGAGGTTTAGGGGGTGTGGCCTTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp GCATGCAGCTACAAATGTGCCCACCTGTGCCGTAGCTaGGAGAATTCTGAGCTATACTTCCTCCCATGGTGC +
Preference number: 4 (lower is better)
Translates to: ACSYKCAHLCRS*ENSELYFLPWC
Trigger: GCACCATGGGAGGAAGTATAGCTCAGAATTCTCCAAGCTACGGCACAGGTGGGCACATTTGTAGCTGCATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR TCA 90 bp TCTCCTCACCACACTTGCACACATCTTCCTCCATCAGCAGTATTAGTATTGGCAGCCCCGTGCGGATATTaGTGCAGTCCACGGGCATGT +
Preference number: 4 (lower is better)
Translates to: SPHHTCTHLPPSAVLVLAAPCGY*CSPRAC
Trigger: ACATGCCCGTGGACTGCATCAATATCCGCACGGGGC...TGCCAATACTAATACTGCTGATGGAGGAAGATGTGTGCAAGTGTGGTGAGGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp TTCGTTAGAAAGCCAGATTGTGAGCTTCTCAGAGTGCCACACATTTGGGGACCAGCAGCAGACAGTCTCTaGGCTTCCCATCTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: FVRKPDCELLRVPHIWGPAADSL*ASHLEA
Trigger: AGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGC...TGGTCCCCAAATGTGTGGCACTCTGAGAAGCTCACAATCTGGCTTTCTAACGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp CTTGAGAGTGTTAGTACAGAGAGGATGGATCTGAGGAGATGCCTCTGTGCTTCAGCAGCAGACAGTCTCTaGGCTTCCCATCTGGAGGCT +
Preference number: 4 (lower is better)
Translates to: LESVSTERMDLRRCLCASAADSL*ASHLEA
Trigger: AGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGC...TGAAGCACAGAGGCATCTCCTCAGATCCATCCTCTCTGTACTAACACTCTCAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp CATCCCACCTTTGTGCCGGGGTACTGTTTGAAACTAAAATATGCCAGTCACAAACGGGGACGCGGCCACTaGAGTCTCTTCAGACAGGAT +
Preference number: 4 (lower is better)
Translates to: HPTFVPGYCLKLKYASHKRGRGH*SLFRQD
Trigger: ATCCTGTCTGAAGAGACTGCAGTGGCCGCGTCCCCG...TTTGTGACTGGCATATTTTAGTTTCAAACAGTACCCCGGCACAAAGGTGGGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp CGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACAACAGATGTAGAAGTAGACCTCAGGGGTTaGTGTAGCATAGGCTGCGTA +
Preference number: 4 (lower is better)
Translates to: RRLEGKMRGCMGSTTDVEVDLRG*CSIGCV
Trigger: TACGCAGCCTATGCTACACCAACCCCTGAGGTCTAC...TTCTACATCTGTTGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp CTCACAGCATACCTCGGGCTTTCTTTGTGGTACCATGCAGGTCAGTCACAATTAATACGGGTACTGGTATaGCACTGCATATGCCTGCCC +
Preference number: 4 (lower is better)
Translates to: LTAYLGLSLWYHAGQSQLIRVLV*HCICLP
Trigger: GGGCAGGCATATGCAGTGCCATACCAGTACCCGTAT...TAATTGTGACTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTATGCTGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CAA 72 bp GCCTCAGCTGAAGAAATCCTTGAACTTCTGATTCTCTaGACTGTGCCACTTGGGTTTTATGCCACGCTGCGG +
Preference number: 4 (lower is better)
Translates to: ASAEEILELLIL*TVPLGFYATLR
Trigger: CCGCAGCGTGGCATAAAACCCAAGTGGCACAGTCAAGAGAATCAGAAGTTCAAGGATTTCTTCAGCTGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp CATCCCACCTTTGTGCCGGGGTACTGTTTGAAACTAAAATATGCCAGTCACAAAGACAACTTGAGTTCCTaGGGGGTATGCGCCGCTGTA +
Preference number: 4 (lower is better)
Translates to: HPTFVPGYCLKLKYASHKDNLSS*GVCAAV
Trigger: TACAGCGGCGCATACCCCGCAGGAACTCAAGTTGTC...TTTGTGACTGGCATATTTTAGTTTCAAACAGTACCCCGGCACAAAGGTGGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp TCTCCTCACCACACTTGCACACATCTTCCTCCATCAGCAGTATTAGTATTGGCACATATGCCTGCCCGTTaGCGGCATAGACAACTTGAG +
Preference number: 4 (lower is better)
Translates to: SPHHTCTHLPPSAVLVLAHMPAR*RHRQLE
Trigger: CTCAAGTTGTCTATGCCGCCAACGGGCAGGCATATG...TGCCAATACTAATACTGCTGATGGAGGAAGATGTGTGCAAGTGTGGTGAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp TCTCCTCACCACACTTGCACACATCTTCCTCCATCAGCAGTATTAGTATTGGCATCGCGGATGATGACTTaGTTGGCAGGCTGTTGTCCA +
Preference number: 4 (lower is better)
Translates to: SPHHTCTHLPPSAVLVLASRMMT*LAGCCP
Trigger: TGGACAACAGCCTGCCAACCAAGTCATCATCCGCGA...TGCCAATACTAATACTGCTGATGGAGGAAGATGTGTGCAAGTGTGGTGAGGAGA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp CATCCCACCTTTGTGCCGGGGTACTGTTTGAAACTAAAATATGCCAGTCACAAACAGTCCACGGGCATGTaGACCTTATCCTCTATGCTC +
Preference number: 4 (lower is better)
Translates to: HPTFVPGYCLKLKYASHKQSTGM*TLSSML
Trigger: GAGCATAGAGGATAAGGTCCACATGCCCGTGGACTG...TTTGTGACTGGCATATTTTAGTTTCAAACAGTACCCCGGCACAAAGGTGGGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CAA 72 bp CTCAGGCTCTCACTCACAGCATACCTCGGGCTTTCTTaGTGGTACCATGCAGGTCAGTCACAATTATTAGAT +
Preference number: 4 (lower is better)
Translates to: LRLSLTAYLGLS*WYHAGQSQLLD
Trigger: ATCTAATAATTGTGACTGACCTGCATGGTACCACAAAGAAAGCCCGAGGTATGCTGTGAGTGAGAGCCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR GCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAAGACAACTTGAGTTCCTaGGGGGTATGCGCCGCTGTA +
Preference number: 4 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQDNLSS*GVCAAV
Trigger: TACAGCGGCGCATACCCCGCAGGAACTCAAGTTGTC...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp CAAAGTCAGAATGAATGCTTCCTGGGAGCACCCTGGAGAAACAAGACTATGCAATTGTCCATAAACTCCTaGATACGGGTACTGGTATGG +
Preference number: 4 (lower is better)
Translates to: QSQNECFLGAPWRNKTMQLSINS*IRVLVW
Trigger: CCATACCAGTACCCGTATGCAGGAGTTTATGGACAA...TTGCATAGTCTTGTTTCTCCAGGGTGCTCCCAGGAAGCATTCATTCTGACTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CAA 72 bp GAACCATCTCCCCAGCTCCTTAGTCTTACTGTAGATTaGTACTGTGCCACCAGAATGCCTTCTAAGTTGTGT +
Preference number: 4 (lower is better)
Translates to: EPSPQLLSLTVD*YCATRMPSKLC
Trigger: ACACAACTTAGAAGGCATTCTGGTGGCACAGTACAAATCTACAGTAAGACTAAGGAGCTGGGGAGATGGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp AAGAGCAGGCAATATTCTCAATATCAGATGCAGATATaGTTGCCCACTGAAACCTATCAAGCTGGGCCTCCG +
Preference number: 4 (lower is better)
Translates to: KSRQYSQYQMQI*LPTETYQAGPP
Trigger: CGGAGGCCCAGCTTGATAGGTTTCAGTGGGCAACAATATCTGCATCTGATATTGAGAATATTGCCTGCTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp ATCTTTCATCTACGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACATTTGTTCTGGAATCCTaGAGTGTAAACTTCCATGCC +
Preference number: 4 (lower is better)
Translates to: IFHLRRLEGKMRGCMGSTFVLES*SVNFHA
Trigger: GGCATGGAAGTTTACACTGCAGGATTCCAGAACAAA...TGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACGTAGATGAAAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAACATATGCCTGCCCGTTaGCGGCATAGACAACTTGAG +
Preference number: 4 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQHMPAR*RHRQLE
Trigger: CTCAAGTTGTCTATGCCGCCAACGGGCAGGCATATG...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR CCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAAATACGGGTACTGGTATaGCACTGCATATGCCTGCCC +
Preference number: 4 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQIRVLV*HCICLP
Trigger: GGGCAGGCATATGCAGTGCCATACCAGTACCCGTAT...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp TCGATTAGAAAGGCTGTGCAGACAGGAGTAGCTGACTaGAGCTTGCACTGCACAAGTGTAGTTATAACACTA +
Preference number: 4 (lower is better)
Translates to: SIRKAVQTGVAD*SLHCTSVVITL
Trigger: TAGTGTTATAACTACACTTGTGCAGTGCAAGCTCAAGTCAGCTACTCCTGTCTGCACAGCCTTTCTAATCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp CTTATTAAAGCGACACTGAACGGCGTCCGTACCATGTaGTCACATATCCCATCTATCAGAGATGACAGAAAA +
Preference number: 4 (lower is better)
Translates to: LIKATLNGVRTM*SHIPSIRDDRK
Trigger: TTTTCTGTCATCTCTGATAGATGGGATATGTGACAACATGGTACGGACGCCGTTCAGTGTCGCTTTAATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
3UTR CAA 72 bp CCAGAAGAGCACCTGGGAAAAATCTTCTTATCCAAATaGCTAAAATGTGCTGCATGCAGCTACAAATGTGCC +
Preference number: 4 (lower is better)
Translates to: PEEHLGKIFLSK*LKCAACSYKCA
Trigger: GGCACATTTGTAGCTGCATGCAGCACATTTTAGCAATTTGGATAAGAAGATTTTTCCCAGGTGCTCTTCTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR GCA 90 bp GTATTCAAAGGCCTAAGAATATGTGTGGGGGATATTGAATTCAAACCACCTCAATTTGTTCTGGAATCCTaGAGTGTAAACTTCCATGCC +
Preference number: 4 (lower is better)
Translates to: VFKGLRICVGDIEFKPPQFVLES*SVNFHA
Trigger: GGCATGGAAGTTTACACTGCAGGATTCCAGAACAAA...TTGAGGTGGTTTGAATTCAATATCCCCCACACATATTCTTAGGCCTTTGAATAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp GAACCAAGAGATAAGAGCATAAGTTCAAAGCAGTTATaGGAACAGAATGACCCACTTTCGATTAGAAAGGCT +
Preference number: 4 (lower is better)
Translates to: EPRDKSISSKQL*EQNDPLSIRKA
Trigger: AGCCTTTCTAATCGAAAGTGGGTCATTCTGTTCCAATAACTGCTTTGAACTTATGCTCTTATCTCTTGGTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp TTTATTTATTTATTTGTGGGTGTTGGGCATGCTCCATaGAACCATCTCACCAAACCCATCTCTGCACTTTTT +
Preference number: 4 (lower is better)
Translates to: FIYLFVGVGHAP*NHLTKPISALF
Trigger: AAAAAGTGCAGAGATGGGTTTGGTGAGATGGTTCAATGGAGCATGCCCAACACCCACAAATAAATAAATAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp TTCACCCTCAGACTTGATATTCTTTACTCTTTGTATTaGTTGTTCACATGCACAGAGCTAAGTGAATGTTCC +
Preference number: 4 (lower is better)
Translates to: FTLRLDILYSLY*LFTCTELSECS
Trigger: GGAACATTCACTTAGCTCTGTGCATGTGAACAACAAATACAAAGAGTAAAGAATATCAAGTCTGAGGGTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp ACCCTCAGACTTGATATTCTTTACTCTTTGTATTTGTaGTTCACATGCACAGAGCTAAGTGAATGTTCCAAA +
Preference number: 4 (lower is better)
Translates to: TLRLDILYSLYL*FTCTELSECSK
Trigger: TTTGGAACATTCACTTAGCTCTGTGCATGTGAACAACAAATACAAAGAGTAAAGAATATCAAGTCTGAGGGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp CTAAACTTCACCCTCAGACTTGATATTCTTTACTCTTaGTATTTGTTGTTCACATGCACAGAGCTAAGTGAA +
Preference number: 4 (lower is better)
Translates to: LNFTLRLDILYS*YLLFTCTELSE
Trigger: TTCACTTAGCTCTGTGCATGTGAACAACAAATACAAAGAGTAAAGAATATCAAGTCTGAGGGTGAAGTTTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
3UTR CAA 72 bp CCTCAACTATGTATAGAGAGACTAATGCATTTCTATTaGAAGAAGCAAAGAACACAAGGTGACTACACATAC +
Preference number: 4 (lower is better)
Translates to: PQLCIERLMHFY*KKQRTQGDYTY
Trigger: GTATGTGTAGTCACCTTGTGTTCTTTGCTTCTTCAAATAGAAATGCATTAGTCTCTCTATACATAGTTGAGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS GCA 90 bp CCCGCTGTACGCAGAGACCGGGAGCGGCAGCCAGCGTGCATTACCTaGATACGGGTACTGGTATGGCACTGCATATGCCTGCCCGTTGGC +
Preference number: 5 (lower is better)
Translates to: PAVRRDRERQPACIT*IRVLVWHCICLPVG
Trigger: GCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGGCTGCCGCTCCCGGTCTCTGCGTACAGCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS GCA 90 bp CCTCCTCGCCCCGCTGTACGCAGAGACCGGGAGCGGCAGCCAGCGTaGATTACCTGCATACGGGTACTGGTATGGCACTGCATATGCCTG +
Preference number: 5 (lower is better)
Translates to: PPRPAVRRDRERQPA*ITCIRVLVWHCICL
Trigger: CAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGGCTGCCGCTCCCGGTCTCTGCGTACAGCGGGGCGAGGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS GCA 90 bp CAGTCTCTGGGCTTCCCATCTGGAGGCTGGATGTCCCGGCACTCATaGCCCGTGCGGATATTGATGCAGTCCACGGGCATGTGGACCTTA +
Preference number: 5 (lower is better)
Translates to: QSLGFPSGGWMSRHS*PVRILMQSTGMWTL
Trigger: TAAGGTCCACATGCCCGTGGACTGCATCAATATCCGCACGGGGCATGAGTGCCGGGACATCCAGCCTCCAGATGGGAAGCCCAGAGACTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS GCA 90 bp CACTGCATATGCCTGCCCGTTGGCGGCATAGACAACTTGAGTTCCTaGGGGGTATGCGCCGCTGTATGGACCATAGCCGTAGACCTCAGG +
Preference number: 5 (lower is better)
Translates to: HCICLPVGGIDNLSS*GVCAAVWTIAVDLR
Trigger: CCTGAGGTCTACGGCTATGGTCCATACAGCGGCGCATACCCCGCAGGAACTCAAGTTGTCTATGCCGCCAACGGGCAGGCATATGCAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS CCA 90 bp CAAACGATCTGCAGCAGACAGTCTCTGGGCTTCCCATCTGGAGGCTaGATGTCCCGGCACTCATGCCCCGTGCGGATATTGATGCAGTCC +
Preference number: 5 (lower is better)
Translates to: QTICSRQSLGFPSGG*MSRHSCPVRILMQS
Trigger: GGACTGCATCAATATCCGCACGGGGCATGAGTGCCGGGACATCCAGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGCAGATCGTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS CCA 90 bp GTCTCGGCAAACGATCTGCAGCAGACAGTCTCTGGGCTTCCCATCTaGAGGCTGGATGTCCCGGCACTCATGCCCCGTGCGGATATTGAT +
Preference number: 5 (lower is better)
Translates to: VSANDLQQTVSGLPI*RLDVPALMPRADID
Trigger: ATCAATATCCGCACGGGGCATGAGTGCCGGGACATCCAGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGCAGATCGTTTGCCGAGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS CCA 90 bp CGGGAGCGGCAGCCAGCGTGCATTACCTGCATACGGGTACTGGTATaGCACTGCATATGCCTGCCCGTTGGCGGCATAGACAACTTGAGT +
Preference number: 5 (lower is better)
Translates to: RERQPACITCIRVLV*HCICLPVGGIDNLS
Trigger: ACTCAAGTTGTCTATGCCGCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGGCTGCCGCTCCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS-3UTR CAA 90 bp ATAACTCCAGTTCCAGGCACCAAATGCCCTATTCTGGCCCCGACAGGCACATGCTGCCCCGTGCGGATATaGATGCAGTCCACGGGCATG +
Preference number: 5 (lower is better)
Translates to: ITPVPGTKCPILAPTGTCCPVRI*MQSTGM
Trigger: CATGCCCGTGGACTGCATCAATATCCGCACGGGGCA...GCATGTGCCTGTCGGGGCCAGAATAGGGCATTTGGTGCCTGGAACTGGAGTTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS TCA 90 bp GGGAGGCGGGGACGCGGCCACTGCAGTCTCTTCAGACAGGATTGCTaGACCAACGTAAGCTGTGTTTGTTCTGGAATCCTGCAGTGTAAA +
Preference number: 5 (lower is better)
Translates to: GRRGRGHCSLFRQDC*TNVSCVCSGILQCK
Trigger: TTTACACTGCAGGATTCCAGAACAAACACAGCTTACGTTGGTTCAGCAATCCTGTCTGAAGAGACTGCAGTGGCCGCGTCCCCGCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS-3UTR CAA 90 bp TTCGTTAGAAAGCCAGATTGTGAGCTTCTCAGAGTGCCACACATTTGGGGACCAGCCAGGTCACTGTCATaGTCTCGGTACCGCTCGCGG +
Preference number: 5 (lower is better)
Translates to: FVRKPDCELLRVPHIWGPARSLS*SRYRSR
Trigger: CCGCGAGCGGTACCGAGACAATGACAGTGACCTGGC...TGGTCCCCAAATGTGTGGCACTCTGAGAAGCTCACAATCTGGCTTTCTAACGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CAA 90 bp ATCTTTCATCTACGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACATGCCCCGTGCGGATATaGATGCAGTCCACGGGCATG +
Preference number: 5 (lower is better)
Translates to: IFHLRRLEGKMRGCMGSTCPVRI*MQSTGM
Trigger: CATGCCCGTGGACTGCATCAATATCCGCACGGGGCA...TGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACGTAGATGAAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS-3UTR CAA 90 bp ATCTTTCATCTACGTAGACTGGAAGGCAAAATGAGAGGGTGCATGGGGTCAACATTGGTTGGCAGGCTGTaGTCCATAAACTCCTGCATA +
Preference number: 5 (lower is better)
Translates to: IFHLRRLEGKMRGCMGSTLVGRL*SINSCI
Trigger: TATGCAGGAGTTTATGGACAACAGCCTGCCAACCAA...TGTTGACCCCATGCACCCTCTCATTTTGCCTTCCAGTCTACGTAGATGAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS GCA 72 bp CCCGCTGTACGCAGAGACCGGGAGCGGCAGCCAGCGTaGATTACCTGCATACGGGTACTGGTATGGCACTGC +
Preference number: 6 (lower is better)
Translates to: PAVRRDRERQPA*ITCIRVLVWHC
Trigger: GCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGGCTGCCGCTCCCGGTCTCTGCGTACAGCGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS CCA 72 bp TGCAGCAGACAGTCTCTGGGCTTCCCATCTGGAGGCTaGATGTCCCGGCACTCATGCCCCGTGCGGATATTG +
Preference number: 6 (lower is better)
Translates to: CSRQSLGFPSGG*MSRHSCPVRIL
Trigger: CAATATCCGCACGGGGCATGAGTGCCGGGACATCCAGCCTCCAGATGGGAAGCCCAGAGACTGTCTGCTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS CCA 72 bp AGCGGCAGCCAGCGTGCATTACCTGCATACGGGTACTaGTATGGCACTGCATATGCCTGCCCGTTGGCGGCA +
Preference number: 6 (lower is better)
Translates to: SGSQRALPAYGY*YGTAYACPLAA
Trigger: TGCCGCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGGCTGCCGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS GCA 72 bp TGCCTGCCCGTTGGCGGCATAGACAACTTGAGTTCCTaGGGGGTATGCGCCGCTGTATGGACCATAGCCGTA +
Preference number: 6 (lower is better)
Translates to: CLPVGGIDNLSS*GVCAAVWTIAV
Trigger: TACGGCTATGGTCCATACAGCGGCGCATACCCCGCAGGAACTCAAGTTGTCTATGCCGCCAACGGGCAGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS CCA 72 bp CAGCCAGCGTGCATTACCTGCATACGGGTACTGGTATaGCACTGCATATGCCTGCCCGTTGGCGGCATAGAC +
Preference number: 6 (lower is better)
Translates to: QPACITCIRVLV*HCICLPVGGID
Trigger: GTCTATGCCGCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGCTGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS CAA 90 bp CGTAGGGAGGCGGGGACGCGGCCACTGCAGTCTCTTCAGACAGGATaGCTGAACCAACGTAAGCTGTGTTTGTTCTGGAATCCTGCAGTG +
Preference number: 6 (lower is better)
Translates to: RREAGTRPLQSLQTG*LNQRKLCLFWNPAV
Trigger: CACTGCAGGATTCCAGAACAAACACAGCTTACGTTGGTTCAGCAATCCTGTCTGAAGAGACTGCAGTGGCCGCGTCCCCGCCTCCCTACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS GCA 72 bp GCGTGCATTACCTGCATACGGGTACTGGTATGGCACTaGATATGCCTGCCCGTTGGCGGCATAGACAACTTG +
Preference number: 6 (lower is better)
Translates to: ACITCIRVLVWH*ICLPVGGIDNL
Trigger: CAAGTTGTCTATGCCGCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAATGCACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS CAA 90 bp AGCCAGGTCACTGTCATTGTCTCGGTACCGCTCGCGGATGATGACTaGGTTGGCAGGCTGTTGTCCATAAACTCCTGCATACGGGTACTG +
Preference number: 6 (lower is better)
Translates to: SQVTVIVSVPLADDD*VGRLLSINSCIRVL
Trigger: CAGTACCCGTATGCAGGAGTTTATGGACAACAGCCTGCCAACCAAGTCATCATCCGCGAGCGGTACCGAGACAATGACAGTGACCTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11
CDS CAA 72 bp GCGGGGACGCGGCCACTGCAGTCTCTTCAGACAGGATaGCTGAACCAACGTAAGCTGTGTTTGTTCTGGAAT +
Preference number: 6 (lower is better)
Translates to: AGTRPLQSLQTG*LNQRKLCLFWN
Trigger: ATTCCAGAACAAACACAGCTTACGTTGGTTCAGCAATCCTGTCTGAAGAGACTGCAGTGGCCGCGTCCCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS TCA 72 bp GGACGCGGCCACTGCAGTCTCTTCAGACAGGATTGCTaGACCAACGTAAGCTGTGTTTGTTCTGGAATCCTG +
Preference number: 6 (lower is better)
Translates to: GRGHCSLFRQDC*TNVSCVCSGIL
Trigger: CAGGATTCCAGAACAAACACAGCTTACGTTGGTTCAGCAATCCTGTCTGAAGAGACTGCAGTGGCCGCGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000027297.11
ENSMUST00000156687.8
CDS GCA 72 bp ATTACCTGCATACGGGTACTGGTATGGCACTGCATATaGCTGCCCGTTGGCGGCATAGACAACTTGAGTTCC +
Preference number: 6 (lower is better)
Translates to: ITCIRVLVWHCI*LPVGGIDNLSS
Trigger: GGAACTCAAGTTGTCTATGCCGCCAACGGGCAGGCATATGCAGTGCCATACCAGTACCCGTATGCAGGTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000156687.8
CDS CAA 72 bp ACTGTCATTGTCTCGGTACCGCTCGCGGATGATGACTaGGTTGGCAGGCTGTTGTCCATAAACTCCTGCATA +
Preference number: 6 (lower is better)
Translates to: TVIVSVPLADDD*VGRLLSINSCI
Trigger: TATGCAGGAGTTTATGGACAACAGCCTGCCAACCAAGTCATCATCCGCGAGCGGTACCGAGACAATGACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027297.11