Pregenerated sensors for PLEKHA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002733Ensembl transcript IDs: ENSMUST00000111920.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTaGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTC | + |
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Preference number: 1 (lower is better) Translates to: FLRRKLGMSVSSGGS*ACLFPQEEAGHVCF Trigger: GAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| 3UTR CCA 90 bp | GACACTCAGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTaGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTC | + |
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Preference number: 1 (lower is better) Translates to: DTQRKLGMSVSSGGS*ACLFPQEEAGHVCF Trigger: GAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCTGAGTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| 3UTR-3UTR CCA 90 bp | CACTCAGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTTCCTCAGGAGGAAGCTaGGCATGTCTGTTTCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: HSEEAGHVCFLRRKLGMSSSGGS*ACLFPQ Trigger: CTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGA...AGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCTGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| 3UTR CCA 72 bp | AGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTaGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCAT | + |
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Preference number: 3 (lower is better) Translates to: RKLGMSVSSGGS*ACLFPQEEAGH Trigger: ATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CCA 90 bp | CTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGCTGCAGGAACCAGGGTaGCTGGCTGAACGCTTCATC | + |
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Preference number: 4 (lower is better) Translates to: LRRKLGMSVSSGGSWACLLQEPG*LAERFI Trigger: GATGAAGCGTTCAGCCAGCCACCCTGGTTCCTGCAG...CAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | TCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGACCAGGGTGGCTGGCTaGACGCTTCATCATCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: SVSSGGSWACLFPQEEAGTRVAG*TLHHLN Trigger: GTTCAGATGATGAAGCGTTCAGCCAGCCACCCTGGT...CCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | CTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGCAGATGCTGGTTCTTTaGTGGAGCAGCTGCTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LRRKLGMSVSSGGSWACLQMLVL*WSSCSS Trigger: AGAGGAGCAGCTGCTCCATCAAAGAACCAGCATCTG...CAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR GCA 90 bp | CACTCAGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTTCGGTGGAGGGCAGATaGTGGTTCTTTGATGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: HSEEAGHVCFLRRKLGMSSVEGR*WFFDGA Trigger: TGCTCCATCAAAGAACCAGCATCTGCCCTCCACCGA...AGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCTGAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CCA 90 bp | GTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGTGAAGAGGTCTCTCTaGGTCTTCAGGGGGAACATC | + |
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Preference number: 4 (lower is better) Translates to: VCFLRRKLGMSVSSGGSWVKRSL*VFRGNI Trigger: GATGTTCCCCCTGAAGACCCAGAGAGACCTCTTCAC...CCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | TGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGGTGTTTCCTGAACAGTaGAGAGGTCTCTCTGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: WACLFPQEEAGHVCFLRRVFPEQ*RGLSGS Trigger: AGACCCAGAGAGACCTCTTCACTGTTCAGGAAACAC...CCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | CACTCAGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGCAGACATCATCCTGTaGGTCATAGTAGGACAGGAT | + |
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Preference number: 4 (lower is better) Translates to: HSEEAGHVCFLRRKLGMSADIIL*VIVGQD Trigger: ATCCTGTCCTACTATGACTCACAGGATGATGTCTGC...AGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCTGAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CCA 90 bp | TCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGGTGTTGTCTGCGGGATaGACTTTAATCTCACAGACC | + |
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Preference number: 4 (lower is better) Translates to: SVSSGGSWACLFPQEEAGVLSAG*TLISQT Trigger: GGTCTGTGAGATTAAAGTCCATCCCGCAGACAACAC...CCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | GGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAATTAAGTGTGTTTCCTaGACAGTGAAGAGGTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: GHVCFLRRKLGMSVSSGGIKCVS*TVKRSL Trigger: GAGAGACCTCTTCACTGTTCAGGAAACACACTTAAT...TCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR GCA 90 bp | TCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATTCTTGTGTTGTCTaGGGGATGGACTTTAATCTC | + |
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Preference number: 4 (lower is better) Translates to: SVSSGGSWACLFPQEEAGHSCVV*GMDFNL Trigger: GAGATTAAAGTCCATCCCGCAGACAACACAAGAATG...CCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR GCA 90 bp | CTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTATTTCTTTCTCTTTTaGAGTCCTCGTGTCGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: LRRKLGMSVSSGGSWACLYFFLF*SPRVGQ Trigger: TTGACCGACACGAGGACTGCAAAAGAGAAAGAAATA...CAGACATGCCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | TCCATTCCCATTGAAAGCTGTTTACTTCTCTCGTGTAAGGGAACAAGATCACTGTGTTACAGGTGGCACTaGGCAAGGAGGAGGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SIPIESCLLLSCKGTRSLCYRWH*ARRRLH Trigger: ATGAAGCCTCCTCCTTGCTCAGTGCCACCTGTAACA...CAGTGATCTTGTTCCCTTACACGAGAGAAGTAAACAGCTTTCAATGGGAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR TCA 90 bp | TCCATTCCCATTGAAAGCTGTTTACTTCTCTCGTGTAAGGGAACAAGATCACTGGAACGCTTCATCATCTaGACAGGAGAAGGCGACACG | + |
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Preference number: 4 (lower is better) Translates to: SIPIESCLLLSCKGTRSLERFII*TGEGDT Trigger: CGTGTCGCCTTCTCCTGTTCAGATGATGAAGCGTTC...CAGTGATCTTGTTCCCTTACACGAGAGAAGTAAACAGCTTTCAATGGGAATGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CCA 90 bp | TCCATTCCCATTGAAAGCTGTTTACTTCTCTCGTGTAAGGGAACAAGATCACTGTCATGTTCTCCACACTaGGAGAGGGATGCCTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: SIPIESCLLLSCKGTRSLSCSPH*ERDASH Trigger: ATGAGAGGCATCCCTCTCCCAGTGTGGAGAACATGA...CAGTGATCTTGTTCCCTTACACGAGAGAAGTAAACAGCTTTCAATGGGAATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR GCA 90 bp | TCCATTCCCATTGAAAGCTGTTTACTTCTCTCGTGTAAGGGAACAAGATCACTGTCTTTATACTCCCTTTaGTCCCTTTGCAGACATCAT | + |
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Preference number: 4 (lower is better) Translates to: SIPIESCLLLSCKGTRSLSLYSL*SLCRHH Trigger: ATGATGTCTGCAAAGGGAGCAAAGGGAGTATAAAGA...CAGTGATCTTGTTCCCTTACACGAGAGAAGTAAACAGCTTTCAATGGGAATGGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CAA 90 bp | GTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGCAGATGCTGGTTCTTaGATGGAGCAGCTGCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: VCFLRRKLGMSVSSGGSWADAGS*MEQLLL Trigger: GAGGAGCAGCTGCTCCATCAAAGAACCAGCATCTGC...CCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CAA 90 bp | TCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGGAAGAGGTTCTTCAGATaGTGTCTTGGCCATGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SVSSGGSWACLFPQEEAGKRFFR*CLGHES Trigger: AGACTCATGGCCAAGACACAATCTGAAGAACCTCTT...CCCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS-3UTR CAA 90 bp | GTCTGTTTCCTCAGGAGGAAGCTGGGCATGTCTGTTTCCTCAGGAGGAAGCTGGTTATTTCTTTCTCTTTaGCAGTCCTCGTGTCGGTCA | + |
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Preference number: 5 (lower is better) Translates to: VCFLRRKLGMSVSSGGSWLFLSL*QSSCRS Trigger: TGACCGACACGAGGACTGCAAAAGAGAAAGAAATAA...CCAGCTTCCTCCTGAGGAAACAGACATGCCCAGCTTCCTCCTGAGGAAACAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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| CDS GCA 72 bp | GAGGCTTCATTCATGTTCTCCACACTGGGAGAGGGATaGCTCTCATCACGGTGGACGAATTCCTGGATCGTA | + |
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Preference number: 6 (lower is better) Translates to: EASFMFSTLGEG*LSSRWTNSWIV Trigger: TACGATCCAGGAATTCGTCCACCGTGATGAGAGGCATCCCTCTCCCAGTGTGGAGAACATGAATGAAGCCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111920.2 |
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