RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLD6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043648

Ensembl transcript IDs: ENSMUST00000125307.2

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTACTGTCCAACACTGTCACCTTCCTAACTTCTGCTGGGGCTGCATaGACAGGAAGACTGGCAGCTGCTCCCCAGCCAGCCAGGAAAGGC +
Preference number: 1 (lower is better)
Translates to: VLSNTVTFLTSAGAA*TGRLAAAPQPARKG
Trigger: GCCTTTCCTGGCTGGCTGGGGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTGACAGTGTTGGACAGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR CCA 90 bp GGAGCCTACAGTACTGTCCAACACTGTCACCTTCCTAACTTCTGCTaGGGCTGCATGCACAGGAAGACTGGCAGCTGCTCCCCAGCCAGC +
Preference number: 1 (lower is better)
Translates to: GAYSTVQHCHLPNFC*GCMHRKTGSCSPAS
Trigger: GCTGGCTGGGGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTGACAGTGTTGGACAGTACTGTAGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR GCA 90 bp TACAGTACTGTCCAACACTGTCACCTTCCTAACTTCTGCTGGGGCTaGATGCACAGGAAGACTGGCAGCTGCTCCCCAGCCAGCCAGGAA +
Preference number: 1 (lower is better)
Translates to: YSTVQHCHLPNFCWG*MHRKTGSCSPASQE
Trigger: TTCCTGGCTGGCTGGGGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTGACAGTGTTGGACAGTACTGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR GCA 90 bp GGGCCAATGCACTCTGAGGCCTGTCTAGTGATGCCCAGGAGAGGATaGTGCCTATCTAGGCAAGTACTAGGGAGCCTACAGTACTGTCCA +
Preference number: 1 (lower is better)
Translates to: GPMHSEACLVMPRRG*CLSRQVLGSLQYCP
Trigger: TGGACAGTACTGTAGGCTCCCTAGTACTTGCCTAGATAGGCAGCATCCTCTCCTGGGCATCACTAGACAGGCCTCAGAGTGCATTGGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR-3UTR CCA 90 bp CTGGCAGCTGCTCCCCAGCCAGCCAGGAAAGGCTCATGCAAAGCAGGAGGGGACATCACAAGCACAAGCTaGAAGAGGAGCAAACAAAGC +
Preference number: 2 (lower is better)
Translates to: LAAAPQPARKGSCKAGGDITSTS*KRSKQS
Trigger: GCTTTGTTTGCTCCTCTTCCAGCTTGTGCTTGTGAT...GTCCCCTCCTGCTTTGCATGAGCCTTTCCTGGCTGGCTGGGGAGCAGCTGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR GCA 72 bp GTCCAACACTGTCACCTTCCTAACTTCTGCTGGGGCTaGATGCACAGGAAGACTGGCAGCTGCTCCCCAGCC +
Preference number: 3 (lower is better)
Translates to: VQHCHLPNFCWG*MHRKTGSCSPA
Trigger: GGCTGGGGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTGACAGTGTTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR TCA 72 bp CTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCTaGGGCCTGTCTAGTGATGCCCAGGAGAGGATGCTG +
Preference number: 3 (lower is better)
Translates to: LNTALETRANAL*GLSSDAQERML
Trigger: CAGCATCCTCTCCTGGGCATCACTAGACAGGCCTCAGAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR CCA 72 bp AGTACTGTCCAACACTGTCACCTTCCTAACTTCTGCTaGGGCTGCATGCACAGGAAGACTGGCAGCTGCTCC +
Preference number: 3 (lower is better)
Translates to: STVQHCHLPNFC*GCMHRKTGSCS
Trigger: GGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTGACAGTGTTGGACAGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
3UTR GCA 72 bp TACAGTACTGTCCAACACTGTCACCTTCCTAACTTCTaGTGGGGCTGCATGCACAGGAAGACTGGCAGCTGC +
Preference number: 3 (lower is better)
Translates to: YSTVQHCHLPNF*WGCMHRKTGSC
Trigger: GCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTGACAGTGTTGGACAGTACTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR GCA 90 bp CTGGCAGCTGCTCCCCAGCCAGCCAGGAAAGGCTCATGCAAAGCAGGAGGGGACACTGCACGCCCCAGCTaGGGGCTGGAGAAGGCGAAG +
Preference number: 4 (lower is better)
Translates to: LAAAPQPARKGSCKAGGDTARPS*GLEKAK
Trigger: CTTCGCCTTCTCCAGCCCGCAGCTGGGGCGTGCAGT...GTCCCCTCCTGCTTTGCATGAGCCTTTCCTGGCTGGCTGGGGAGCAGCTGCCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CCA 90 bp TGCCCACCAGCGACTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCTGAGGGAGCACCTCGCGCCTTaGCCGCCGCCCAGCCAGCAG +
Preference number: 4 (lower is better)
Translates to: CPPATKHCLGDKGQCTLREHLAP*PPPSQQ
Trigger: CTGCTGGCTGGGCGGCGGCCAAGGCGCGAGGTGCTC...CCTCAGAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAGTCGCTGGTGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR TCA 90 bp CTGGCAGCTGCTCCCCAGCCAGCCAGGAAAGGCTCATGCAAAGCAGGAGGGGACGGTGCAGGTCACCTGTaGGGGGAAGAAGAGCACCTC +
Preference number: 4 (lower is better)
Translates to: LAAAPQPARKGSCKAGGDGAGHL*GEEEHL
Trigger: GAGGTGCTCTTCTTCCCCTCACAGGTGACCTGCACC...GTCCCCTCCTGCTTTGCATGAGCCTTTCCTGGCTGGCTGGGGAGCAGCTGCCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CCA 90 bp GGTAGTGCCCACCAGCGACTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCGGCAGAGCTCCAAGCTaGAGCGGGCGGCCAACAGCG +
Preference number: 4 (lower is better)
Translates to: GSAHQRLNTALETRANALGRAPS*SGRPTA
Trigger: CGCTGTTGGCCGCCCGCTCCAGCTTGGAGCTCTGCC...GAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAGTCGCTGGTGGGCACTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR TCA 90 bp CCTTGGAGACAAGGGCCAATGCACTCTGAGGCCTGTCTAGTGATGCCCAGGAGAACGCGCACCCCACGCTaGTGCAGCAGCTGCACTGCA +
Preference number: 4 (lower is better)
Translates to: PWRQGPMHSEACLVMPRRTRTPR*CSSCTA
Trigger: TGCAGTGCAGCTGCTGCATCAGCGTGGGGTGCGCGT...TCTCCTGGGCATCACTAGACAGGCCTCAGAGTGCATTGGCCCTTGTCTCCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR GCA 90 bp GGTAGTGCCCACCAGCGACTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCATGCAGCAGCTGCACTaGACGCCCCAGCTGCGGGCT +
Preference number: 4 (lower is better)
Translates to: GSAHQRLNTALETRANALMQQLH*TPQLRA
Trigger: AGCCCGCAGCTGGGGCGTGCAGTGCAGCTGCTGCAT...GAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAGTCGCTGGTGGGCACTACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR TCA 90 bp CCAATGCACTCTGAGGCCTGTCTAGTGATGCCCAGGAGAGGATGCTGCCTATCTCGCAGCAGGCCGATCTaGGAGCCGTTGAGGGCCATG +
Preference number: 4 (lower is better)
Translates to: PMHSEACLVMPRRGCCLSRSRPI*EPLRAM
Trigger: CATGGCCCTCAACGGCTCTCAGATCGGCCTGCTGCG...AGATAGGCAGCATCCTCTCCTGGGCATCACTAGACAGGCCTCAGAGTGCATTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR GCA 90 bp CACCTTCCTAACTTCTGCTGGGGCTGCATGCACAGGAAGACTGGCAGCTGCTCCCCTGTATCCCTGCCTTaGGCAGCAGGCCGATCTGAG +
Preference number: 4 (lower is better)
Translates to: HLPNFCWGCMHRKTGSCSPVSLP*AAGRSE
Trigger: CTCAGATCGGCCTGCTGCGCAAGGCAGGGATACAGG...GGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CCA 90 bp CCAATGCACTCTGAGGCCTGTCTAGTGATGCCCAGGAGAGGATGCTGCCTATCTGCCCCAGCTGCGGGCTaGAGAAGGCGAAGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: PMHSEACLVMPRRGCCLSAPAAG*RRRRGR
Trigger: TCTGCCTCTTCGCCTTCTCCAGCCCGCAGCTGGGGC...AGATAGGCAGCATCCTCTCCTGGGCATCACTAGACAGGCCTCAGAGTGCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR TCA 90 bp CACCTTCCTAACTTCTGCTGGGGCTGCATGCACAGGAAGACTGGCAGCTGCTCCCGATCTGAGAGCCGTTaGGGGCCATGTAGTCGCAGT +
Preference number: 4 (lower is better)
Translates to: HLPNFCWGCMHRKTGSCSRSESR*GPCSRS
Trigger: ACTGCGACTACATGGCCCTCAACGGCTCTCAGATCG...GGAGCAGCTGCCAGTCTTCCTGTGCATGCAGCCCCAGCAGAAGTTAGGAAGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CCA 90 bp CTGGCAGCTGCTCCCCAGCCAGCCAGGAAAGGCTCATGCAAAGCAGGAGGGGACCCTTCTTGTCAACGATaGCAAACTTGTGGTGCATGT +
Preference number: 4 (lower is better)
Translates to: LAAAPQPARKGSCKAGGDPSCQR*QTCGAC
Trigger: ACATGCACCACAAGTTTGCCATCGTTGACAAGAAGG...GTCCCCTCCTGCTTTGCATGAGCCTTTCCTGGCTGGCTGGGGAGCAGCTGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CCA 90 bp GGTAGTGCCCACCAGCGACTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCGGAAAAAGCTGTACTTaGTGGGGTCAAATTCTTCCC +
Preference number: 4 (lower is better)
Translates to: GSAHQRLNTALETRANALGKSCT*WGQILP
Trigger: GGGAAGAATTTGACCCCACCAAGTACAGCTTTTTCC...GAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAGTCGCTGGTGGGCACTACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS TCA 90 bp CAAGCTGGAGCGGGCGGCCAACAGCGCGCGCAGCAGGCGGCTCAGTaGACTCTCGCTGTGGGGGAGGCTACACGGGCAGCCCGAGGGCCC +
Preference number: 5 (lower is better)
Translates to: QAGAGGQQRAQQAAQ*TLAVGEATRAARGP
Trigger: GGGCCCTCGGGCTGCCCGTGTAGCCTCCCCCACAGCGAGAGTTCACTGAGCCGCCTGCTGCGCGCGCTGTTGGCCGCCCGCTCCAGCTTG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CCA 90 bp GCGGCCAACAGCGCGCGCAGCAGGCGGCTCAGTGAACTCTCGCTGTaGGGGAGGCTACACGGGCAGCCCGAGGGCCCGGGAGGCAACCCT +
Preference number: 5 (lower is better)
Translates to: AANSARSRRLSELSL*GRLHGQPEGPGGNP
Trigger: AGGGTTGCCTCCCGGGCCCTCGGGCTGCCCGTGTAGCCTCCCCCACAGCGAGAGTTCACTGAGCCGCCTGCTGCGCGCGCTGTTGGCCGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CCA 90 bp CCCCACGCTGATGCAGCAGCTGCACTGCACGCCCCAGCTGCGGGCTaGAGAAGGCGAAGAGGCAGAGCTCCAAGCTGGAGCGGGCGGCCA +
Preference number: 5 (lower is better)
Translates to: PHADAAAALHAPAAG*RRRRGRAPSWSGRP
Trigger: TGGCCGCCCGCTCCAGCTTGGAGCTCTGCCTCTTCGCCTTCTCCAGCCCGCAGCTGGGGCGTGCAGTGCAGCTGCTGCATCAGCGTGGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CAA 90 bp CCAATGCACTCTGAGGCCTGTCTAGTGATGCCCAGGAGAGGATGCTGCCTATCTAGAGCACCTCGCGCCTaGGCCGCCGCCCAGCCAGCA +
Preference number: 5 (lower is better)
Translates to: PMHSEACLVMPRRGCCLSRAPRA*AAAQPA
Trigger: TGCTGGCTGGGCGGCGGCCAAGGCGCGAGGTGCTCT...AGATAGGCAGCATCCTCTCCTGGGCATCACTAGACAGGCCTCAGAGTGCATTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CAA 90 bp CTGGCAGCTGCTCCCCAGCCAGCCAGGAAAGGCTCATGCAAAGCAGGAGGGGACAGGACGTTCTCCCGGTaGTTCTGGATGGCCTGTGTG +
Preference number: 5 (lower is better)
Translates to: LAAAPQPARKGSCKAGGDRTFSR*FWMACV
Trigger: CACACAGGCCATCCAGAACAACCGGGAGAACGTCCT...GTCCCCTCCTGCTTTGCATGAGCCTTTCCTGGCTGGCTGGGGAGCAGCTGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CCA 90 bp ACATACTCGGTGTCCTCCATAATCAGGACGTTCTCCCGGTTGTTCTaGATGGCCTGTGTGGTCCAGTTGAGGGAGCCGGTGATGAGCACC +
Preference number: 5 (lower is better)
Translates to: TYSVSSIIRTFSRLF*MACVVQLREPVMST
Trigger: GGTGCTCATCACCGGCTCCCTCAACTGGACCACACAGGCCATCCAGAACAACCGGGAGAACGTCCTGATTATGGAGGACACCGAGTATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CAA 90 bp GGTAGTGCCCACCAGCGACTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCGTGCCCTCGATGCTTTaGGGGGAAAAAGCTGTACTT +
Preference number: 5 (lower is better)
Translates to: GSAHQRLNTALETRANALVPSML*GEKAVL
Trigger: AAGTACAGCTTTTTCCCCCAAAAGCATCGAGGGCAC...GAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAGTCGCTGGTGGGCACTACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS-3UTR CAA 90 bp TGCCCACCAGCGACTAAACACTGCCTTGGAGACAAGGGCCAATGCACTCTGAGGGTGATGAGCACCTTCTaGTCAACGATGGCAAACTTG +
Preference number: 5 (lower is better)
Translates to: CPPATKHCLGDKGQCTLRVMSTF*STMANL
Trigger: CAAGTTTGCCATCGTTGACAAGAAGGTGCTCATCAC...CCTCAGAGTGCATTGGCCCTTGTCTCCAAGGCAGTGTTTAGTCGCTGGTGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS TCA 72 bp GCGGGCGGCCAACAGCGCGCGCAGCAGGCGGCTCAGTaGACTCTCGCTGTGGGGGAGGCTACACGGGCAGCC +
Preference number: 6 (lower is better)
Translates to: AGGQQRAQQAAQ*TLAVGEATRAA
Trigger: GGCTGCCCGTGTAGCCTCCCCCACAGCGAGAGTTCACTGAGCCGCCTGCTGCGCGCGCTGTTGGCCGCCCGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CCA 72 bp AGCGCGCGCAGCAGGCGGCTCAGTGAACTCTCGCTGTaGGGGAGGCTACACGGGCAGCCCGAGGGCCCGGGA +
Preference number: 6 (lower is better)
Translates to: SARSRRLSELSL*GRLHGQPEGPG
Trigger: TCCCGGGCCCTCGGGCTGCCCGTGTAGCCTCCCCCACAGCGAGAGTTCACTGAGCCGCCTGCTGCGCGCGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS GCA 72 bp GGGCAGCCCGAGGGCCCGGGAGGCAACCCTGGGGCCTaGAGTAAAGCCTCGGTGCAGGTCACCTGTGAGGGG +
Preference number: 6 (lower is better)
Translates to: GQPEGPGGNPGA*SKASVQVTCEG
Trigger: CCCCTCACAGGTGACCTGCACCGAGGCTTTACTGCAGGCCCCAGGGTTGCCTCCCGGGCCCTCGGGCTGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS GCA 72 bp CCGCACGCGCACCCCACGCTGATGCAGCAGCTGCACTaGACGCCCCAGCTGCGGGCTGGAGAAGGCGAAGAG +
Preference number: 6 (lower is better)
Translates to: PHAHPTLMQQLH*TPQLRAGEGEE
Trigger: CTCTTCGCCTTCTCCAGCCCGCAGCTGGGGCGTGCAGTGCAGCTGCTGCATCAGCGTGGGGTGCGCGTGCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS TCA 72 bp TCGCAGTCAGTGATGACCCGCACGCGCACCCCACGCTaGTGCAGCAGCTGCACTGCACGCCCCAGCTGCGGG +
Preference number: 6 (lower is better)
Translates to: SQSVMTRTRTPR*CSSCTARPSCG
Trigger: CCCGCAGCTGGGGCGTGCAGTGCAGCTGCTGCATCAGCGTGGGGTGCGCGTGCGGGTCATCACTGACTGCGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CAA 72 bp AGGTCACCTGTGAGGGGAAGAAGAGCACCTCGCGCCTaGGCCGCCGCCCAGCCAGCAGCCAACGCATCAGCC +
Preference number: 6 (lower is better)
Translates to: RSPVRGRRAPRA*AAAQPAANASA
Trigger: GGCTGATGCGTTGGCTGCTGGCTGGGCGGCGGCCAAGGCGCGAGGTGCTCTTCTTCCCCTCACAGGTGACCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CCA 72 bp GATGCAGCAGCTGCACTGCACGCCCCAGCTGCGGGCTaGAGAAGGCGAAGAGGCAGAGCTCCAAGCTGGAGC +
Preference number: 6 (lower is better)
Translates to: DAAAALHAPAAG*RRRRGRAPSWS
Trigger: GCTCCAGCTTGGAGCTCTGCCTCTTCGCCTTCTCCAGCCCGCAGCTGGGGCGTGCAGTGCAGCTGCTGCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS GCA 72 bp CGGGAGGCAACCCTGGGGCCTGCAGTAAAGCCTCGGTaGAGGTCACCTGTGAGGGGAAGAAGAGCACCTCGC +
Preference number: 6 (lower is better)
Translates to: REATLGPAVKPR*RSPVRGRRAPR
Trigger: GCGAGGTGCTCTTCTTCCCCTCACAGGTGACCTGCACCGAGGCTTTACTGCAGGCCCCAGGGTTGCCTCCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CAA 90 bp AGCCGCACATACTCGGTGTCCTCCATAATCAGGACGTTCTCCCGGTaGTTCTGGATGGCCTGTGTGGTCCAGTTGAGGGAGCCGGTGATG +
Preference number: 6 (lower is better)
Translates to: SRTYSVSSIIRTFSR*FWMACVVQLREPVM
Trigger: CATCACCGGCTCCCTCAACTGGACCACACAGGCCATCCAGAACAACCGGGAGAACGTCCTGATTATGGAGGACACCGAGTATGTGCGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CCA 72 bp GTGTCCTCCATAATCAGGACGTTCTCCCGGTTGTTCTaGATGGCCTGTGTGGTCCAGTTGAGGGAGCCGGTG +
Preference number: 6 (lower is better)
Translates to: VSSIIRTFSRLF*MACVVQLREPV
Trigger: CACCGGCTCCCTCAACTGGACCACACAGGCCATCCAGAACAACCGGGAGAACGTCCTGATTATGGAGGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CAA 72 bp TTCTCCCGGTTGTTCTGGATGGCCTGTGTGGTCCAGTaGAGGGAGCCGGTGATGAGCACCTTCTTGTCAACG +
Preference number: 6 (lower is better)
Translates to: FSRLFWMACVVQ*REPVMSTFLST
Trigger: CGTTGACAAGAAGGTGCTCATCACCGGCTCCCTCAACTGGACCACACAGGCCATCCAGAACAACCGGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CAA 90 bp ATCAGGACGTTCTCCCGGTTGTTCTGGATGGCCTGTGTGGTCCAGTaGAGGGAGCCGGTGATGAGCACCTTCTTGTCAACGATGGCAAAC +
Preference number: 6 (lower is better)
Translates to: IRTFSRLFWMACVVQ*REPVMSTFLSTMAN
Trigger: GTTTGCCATCGTTGACAAGAAGGTGCTCATCACCGGCTCCCTCAACTGGACCACACAGGCCATCCAGAACAACCGGGAGAACGTCCTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2
CDS CAA 72 bp TACTCGGTGTCCTCCATAATCAGGACGTTCTCCCGGTaGTTCTGGATGGCCTGTGTGGTCCAGTTGAGGGAG +
Preference number: 6 (lower is better)
Translates to: YSVSSIIRTFSR*FWMACVVQLRE
Trigger: CTCCCTCAACTGGACCACACAGGCCATCCAGAACAACCGGGAGAACGTCCTGATTATGGAGGACACCGAGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125307.2