RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000003363

Ensembl transcript IDs: ENSMUST00000117095.8, ENSMUST00000117611.8, ENSMUST00000127240.8, ENSMUST00000131106.8, ENSMUST00000150964.2

Found 167 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACCCTGCTGGGCAGAGGGCTCTTGCGTGTGGGTGTCATTATTTGTaGGGGTCCAGTAGAAGGATGCGATGTCCAGGCTGCTGTGAGCAC +
Preference number: 1 (lower is better)
Translates to: HPAGQRALACGCHYL*GSSRRMRCPGCCEH
Trigger: GTGCTCACAGCAGCCTGGACATCGCATCCTTCTACTGGACCCTCACAAATAATGACACCCACACGCAAGAGCCCTCTGCCCAGCAGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
3UTR GCA 90 bp CTCTTGCGTGTGGGTGTCATTATTTGTGAGGGTCCAGTAGAAGGATaGGATGTCCAGGCTGCTGTGAGCACCGGCAAGGAGGCCCAACCA +
Preference number: 1 (lower is better)
Translates to: LLRVGVIICEGPVEG*DVQAAVSTGKEAQP
Trigger: TGGTTGGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACATCGCATCCTTCTACTGGACCCTCACAAATAATGACACCCACACGCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
3UTR-3UTR TCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACACCAGGACCCAGAGCTaGGTCCAAGGAGGCCTGGAA +
Preference number: 2 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDTRTQS*VQGGLE
Trigger: TTCCAGGCCTCCTTGGACTCAGCTCTGGGTCCTGGT...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
3UTR-3UTR TCA 90 bp AGAGGGCTCTTGCGTGTGGGTGTCATTATTTGTGAGGGTCCAGTAGAAGGATGCATGTCCAGGCTGCTGTaGGCACCGGCAAGGAGGCCC +
Preference number: 2 (lower is better)
Translates to: RGLLRVGVIICEGPVEGCMSRLL*APARRP
Trigger: GGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACAT...GCATCCTTCTACTGGACCCTCACAAATAATGACACCCACACGCAAGAGCCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
3UTR-3UTR TCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGACCAGGACCCAGAGCTaGGTCCAAGGAGGCCTGGAA +
Preference number: 2 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMTRTQS*VQGGLE
Trigger: TTCCAGGCCTCCTTGGACTCAGCTCTGGGTCCTGGT...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
3UTR-3UTR CAA 90 bp AGTAGAAGGATGCGATGTCCAGGCTGCTGTGAGCACCGGCAAGGAGGCCCAACCTGGCTAGTGGAGGGGTaGCTCGTGGTGGCATTGGGA +
Preference number: 3 (lower is better)
Translates to: SRRMRCPGCCEHRQGGPTWLVEG*LVVALG
Trigger: TCCCAATGCCACCACGAGCAACCCCTCCACTAGCCA...GGTTGGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACATCGCATCCTTCTACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
3UTR TCA 72 bp GGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTaGGTCCAAGGAGGCCTGGAAGGCTTTGACCTGTCC +
Preference number: 3 (lower is better)
Translates to: GKGMGTVTRTQS*VQGGLEGFDLS
Trigger: GGACAGGTCAAAGCCTTCCAGGCCTCCTTGGACTCAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
3UTR TCA 72 bp GGGCAGAGGGCTCTTGCGTGTGGGTGTCATTATTTGTaGGGGTCCAGTAGAAGGATGCGATGTCCAGGCTGC +
Preference number: 3 (lower is better)
Translates to: GQRALACGCHYL*GSSRRMRCPGC
Trigger: GCAGCCTGGACATCGCATCCTTCTACTGGACCCTCACAAATAATGACACCCACACGCAAGAGCCCTCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS-3UTR CCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGCAGAGCCTTCAGGTCTaGGGTGCGGCCACTTGGACA +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRQSLQV*GAATWT
Trigger: TGTCCAAGTGGCCGCACCCCAGACCTGAAGGCTCTG...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGCCACGCCCAGCTCCTTaGCCTGGGTCAGCGACCGCC +
Preference number: 4 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELPRPAP*PGSATA
Trigger: GGCGGTCGCTGACCCAGGTCAAGGAGCTGGGCGTGG...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGCACTGTCCACCACGTTaGGCAGAGCCTTCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRHCPPR*AEPSGL
Trigger: CAGACCTGAAGGCTCTGCTCAACGTGGTGGACAGTG...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGAGAACCTCTTCACCCTaGTGGGCAGAGGGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRRTSSP*WAEGSC
Trigger: GCAAGAGCCCTCTGCCCAGCAGGGTGAAGAGGTTCT...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCATGTCCAGGCTGCTGTaGGCACCGGCAAGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSMSRLL*APARRP
Trigger: GGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACAT...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGGTCATAGCAGGGGGCTaGGCGCTGATTTGGTCCAAA +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRVIAGG*ALIWSK
Trigger: TTTGGACCAAATCAGCGCCCAGCCCCCTGCTATGAC...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCCCCAGCTCCTTGACCTaGGTCAGCGACCGCCAGTCC +
Preference number: 4 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSPSSLT*VSDRQS
Trigger: GGACTGGCGGTCGCTGACCCAGGTCAAGGAGCTGGG...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGCCACGCCCAGCTCCTTaGCCTGGGTCAGCGACCGCC +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGPRPAP*PGSATA
Trigger: GGCGGTCGCTGACCCAGGTCAAGGAGCTGGGCGTGG...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp AAGGAGGCCCAACCAGGCCTGGCTAGTGGAGGGGTTGCTCGTGGTGGCATTGGGAGCACCGCCCTTCTCTaGTGCCTTCCATGCCTCGAT +
Preference number: 4 (lower is better)
Translates to: KEAQPGLASGGVARGGIGSTALL*CLPCLD
Trigger: ATCGAGGCATGGAAGGCAGCAGAGAAGGGCGGTGCT...CCCAATGCCACCACGAGCAACCCCTCCACTAGCCAGGCCTGGTTGGGCCTCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS-3UTR CCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGGGCACCTTCAGCTCCTaGTACATCAGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRGTFSS*YISLGF
Trigger: GAAGCCCAAACTGATGTACCAGGAGCTGAAGGTGCC...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGTGTACTTGTTGTGGTTaGCACGGGCATAGGGGATTC +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRCTCCG*HGHRGF
Trigger: GAATCCCCTATGCCCGTGTCAACCACAACAAGTACA...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCCCAGACCCTCAGGAATaGTCTCCACCAGCACCGCCT +
Preference number: 4 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSPDPQE*SPPAPP
Trigger: AGGCGGTGCTGGTGGAGAGCATTCCTGAGGGTCTGG...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGGCAGGCGGCAGGCATTaGCCACACTGTTGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELAGGRH*PHCWLR
Trigger: CCTCAGCCAACAGTGTGGGCAATGCCTGCCGCCTGC...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp AAGGAGGCCCAACCAGGCCTGGCTAGTGGAGGGGTTGCTCGTGGTGGCATTGGGACCGCCCTTCTCTGCTaGCTTCCATGCCTCGATTTC +
Preference number: 4 (lower is better)
Translates to: KEAQPGLASGGVARGGIGTALLC*LPCLDF
Trigger: GAAATCGAGGCATGGAAGGCAGCAGAGAAGGGCGGT...CCCAATGCCACCACGAGCAACCCCTCCACTAGCCAGGCCTGGTTGGGCCTCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS-3UTR TCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGATGTCCAGGCTGCTGTaGGCACCGGCAAGGAGGCCC +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGMSRLL*APARRP
Trigger: GGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACAT...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGGGGTGTCATTATTTGTaGGGGTCCAGTAGAAGGATG +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRGCHYL*GSSRRM
Trigger: CATCCTTCTACTGGACCCTCACAAATAATGACACCC...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGGGACCGCGGCCAGGTTaGTGGGATGGAGCTACCTGC +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGGPRPG*WDGATC
Trigger: GCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCC...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAAGGCCCAACCAGGCCTaGCTAGTGGAGGGGTTGCTC +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIRPNQA*LVEGLL
Trigger: GAGCAACCCCTCCACTAGCCAGGCCTGGTTGGGCCT...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGTGGGGTGCGGCCACTTaGACACAGTGGTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGWGAAT*TQWWGC
Trigger: GCACCCCCACCACTGTGTCCAAGTGGCCGCACCCCA...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCGTGTGCAGGACACCATaGGTCAGCTTCTGCATGTCC +
Preference number: 4 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSVCRTP*VSFCMS
Trigger: GGACATGCAGAAGCTGACTCATGGTGTCCTGCACAC...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGGGACCGCGGCCAGGTTaGTGGGATGGAGCTACCTGC +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMGPRPG*WDGATC
Trigger: GCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCC...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCGCGGGCTTTCTTCTCTaGTGCCTTCCATGCCTCGAT +
Preference number: 4 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSAGFLL*CLPCLD
Trigger: ATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGC...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGCAGCAGGGAGGTGCCTaGTGTCTCCGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELQQGGA*CLREVA
Trigger: AGCTACTTCACGGAGACAGCAGGCACCTCCCTGCTG...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGCCCAGCTCCTTGACCTaGGTCAGCGACCGCCAGTCC +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMPSSLT*VSDRQS
Trigger: GGACTGGCGGTCGCTGACCCAGGTCAAGGAGCTGGG...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGCCAGGTTGATGGGATaGAGCTACCTGCCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIARLMG*SYLPGP
Trigger: TGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGC...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATACAGAACCTGCGTGGATaGGAGAACTCCATGGTGGGC +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIQNLRG*ENSMVG
Trigger: GCCCACCATGGAGTTCTCTCATCCACGCAGGTTCTG...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGCCAGACCCTCAGGAATaGTCTCCACCAGCACCGCCT +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGPDPQE*SPPAPP
Trigger: AGGCGGTGCTGGTGGAGAGCATTCCTGAGGGTCTGG...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGGGTCCAGTAGAAGGATaGGATGTCCAGGCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELGPVEG*DVQAAV
Trigger: CACAGCAGCCTGGACATCGCATCCTTCTACTGGACC...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATATCTGCATGTCCACCATaGGGACCTGGGCACCACTCT +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGISACPP*GPGHHS
Trigger: AGAGTGGTGCCCAGGTCCGCATGGTGGACATGCAGA...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGTGGGATGGAGCTACCTaGCTGGCCCAGGAACCAATA +
Preference number: 4 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELWDGAT*LAQEPI
Trigger: TATTGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCA...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGGCAGGCGGCAGGCATTaGCCACACTGTTGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMAGGRH*PHCWLR
Trigger: CCTCAGCCAACAGTGTGGGCAATGCCTGCCGCCTGC...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GTAGAAGGATGCGATGTCCAGGCTGCTGTGAGCACCGGCAAGGAGGCCCAACCAGGCACCTTCAGCTCCTaGTACATCAGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: VEGCDVQAAVSTGKEAQPGTFSS*YISLGF
Trigger: GAAGCCCAAACTGATGTACCAGGAGCTGAAGGTGCC...TGGTTGGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACATCGCATCCTTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS-3UTR CCA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGGTCATAGCAGGGGGCTaGGCGCTGATTTGGTCCAAA +
Preference number: 4 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELVIAGG*ALIWSK
Trigger: TTTGGACCAAATCAGCGCCCAGCCCCCTGCTATGAC...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATATCCACCATGCGGACCTaGGCACCACTCTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGISTMRT*APLCSR
Trigger: TCTGCTACAGAGTGGTGCCCAGGTCCGCATGGTGGA...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGGCCAGGTTGATGGGATaGAGCTACCTGCCTGGCCCA +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGARLMG*SYLPGP
Trigger: TGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGC...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGTGTGCAGGACACCATaGGTCAGCTTCTGCATGTCC +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIVCRTP*VSFCMS
Trigger: GGACATGCAGAAGCTGACTCATGGTGTCCTGCACAC...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGTCCATTGGTGTTTCTTaGTTATATCGGGTGTCAAAG +
Preference number: 4 (lower is better)
Translates to: PSSARSTGARVSGQWRWRSIGVS*LYRVSK
Trigger: CTTTGACACCCGATATAATCAAGAAACACCAATGGA...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGCACTGTCCACCACGTTaGGCAGAGCCTTCAGGTCTG +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGHCPPR*AEPSGL
Trigger: CAGACCTGAAGGCTCTGCTCAACGTGGTGGACAGTG...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGCAGAACCTGCGTGGATaGGAGAACTCCATGGTGGGC +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGQNLRG*ENSMVG
Trigger: GCCCACCATGGAGTTCTCTCATCCACGCAGGTTCTG...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp AGTAGAAGGATGCGATGTCCAGGCTGCTGTGAGCACCGGCAAGGAGGCCCAACCCTCTGCTGCCTTCCATaGCTCGATTTCATTCAAGGG +
Preference number: 4 (lower is better)
Translates to: SRRMRCPGCCEHRQGGPTLCCLP*LDFIQG
Trigger: CCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAG...GGTTGGGCCTCCTTGCCGGTGCTCACAGCAGCCTGGACATCGCATCCTTCTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS-3UTR GCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGCGGGCTTTCTTCTCTaGTGCCTTCCATGCCTCGAT +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIAGFLL*CLPCLD
Trigger: ATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGC...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACATGCGATGTCCAGGCTaGTGTGAGCACCGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDMRCPG*CEHRQG
Trigger: TCCTTGCCGGTGCTCACAGCAGCCTGGACATCGCAT...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAACCTCGAGGTGCCAGTaGCTGAAGCTGCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGITSRCQ*LKLLKN
Trigger: GTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGT...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGCCTTCAGGTCTGGGGTaGGGCCACTTGGACACAGTG +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMPSGLG*GHLDTV
Trigger: CACTGTGTCCAAGTGGCCGCACCCCAGACCTGAAGG...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACCAGCAGGGAGGTGCCTaGTGTCTCCGTGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDQQGGA*CLREVA
Trigger: AGCTACTTCACGGAGACAGCAGGCACCTCCCTGCTG...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGACCTCTTCACCCTGCTaGGCAGAGGGCTCTTGCGTG +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMTSSPC*AEGSCV
Trigger: CACGCAAGAGCCCTCTGCCCAGCAGGGTGAAGAGGT...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACCAGCCAGAGGCCCATTaGGTTTGCTCACAGCGATGC +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDQPEAH*VCSQRC
Trigger: GCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTG...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGGAGCTGGGGTGCCATTaGGGCAGATCTCCATTGGTG +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMELGCH*GRSPLV
Trigger: CACCAATGGAGATCTGCCTCAATGGCACCCCAGCTC...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACGGTCCAGTAGAAGGATaGGATGTCCAGGCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDGPVEG*DVQAAV
Trigger: CACAGCAGCCTGGACATCGCATCCTTCTACTGGACC...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGACCTCGAGGTGCCAGTaGCTGAAGCTGCTGAAGAAC +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGTSRCQ*LKLLKN
Trigger: GTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGT...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGCCACCACCCAGAACTTaGTGTGCAGGACACCATGAG +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGPPPRT*CAGHHE
Trigger: CTCATGGTGTCCTGCACACCAAGTTCTGGGTGGTGG...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACGAAGGACCGCATCGATaGATCAGAGTGTCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDEGPHR*IRVSPA
Trigger: TGCTGGGGACACTCTGATCCATCGATGCGGTCCTTC...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGTCCCATAGAAACAGCTaGGTCATCAGGGCACCGAAG +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGSHRNS*VIRAPK
Trigger: CTTCGGTGCCCTGATGACTCAGCTGTTTCTATGGGA...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATACTCTGCTGCCTTCCATaGCTCGATTTCATTCAAGGG +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGILCCLP*LDFIQG
Trigger: CCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAG...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATATGGGCAGAGGGCTCTTaGGTGTGGGTGTCATTATTT +
Preference number: 4 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIWAEGS*VWVSLF
Trigger: AAATAATGACACCCACACGCAAGAGCCCTCTGCCCA...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGAGTCCATGTTGGCACTaGCCAGGTAGAAGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGSPCWH*PGRSGS
Trigger: AGACCCACTTCTACCTGGGCAGTGCCAACATGGACT...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGTCCATGTTGGCACTaGCCAGGTAGAAGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDSPCWH*PGRSGS
Trigger: AGACCCACTTCTACCTGGGCAGTGCCAACATGGACT...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGTGGGATGGAGCTACCTaGCTGGCCCAGGAACCAATA +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMWDGAT*LAQEPI
Trigger: TATTGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCA...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGGAAGGACCGCATCGATaGATCAGAGTGTCCCCAGCA +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMEGPHR*IRVSPA
Trigger: TGCTGGGGACACTCTGATCCATCGATGCGGTCCTTC...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
3UTR CAA 72 bp CTGAAGAACCTCTTCACCCTGCTGGGCAGAGGGCTCTaGCGTGTGGGTGTCATTATTTGTGAGGGTCCAGTA +
Preference number: 4 (lower is better)
Translates to: LKNLFTLLGRGL*RVGVIICEGPV
Trigger: TACTGGACCCTCACAAATAATGACACCCACACGCAAGAGCCCTCTGCCCAGCAGGGTGAAGAGGTTCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS-3UTR CCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGCATTGCCCACACTGTTaGCTGAGGTGTCGAGATCGT +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMHCPHC*LRCRDR
Trigger: ACGATCTCGACACCTCAGCCAACAGTGTGGGCAATG...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGCTCTGCTGCCTTCCATaGCTCGATTTCATTCAAGGG +
Preference number: 4 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMLCCLP*LDFIQG
Trigger: CCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAG...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTAGGCCCAACCAGGCCTaGCTAGTGGAGGGGTTGCTC +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSRPNQA*LVEGLL
Trigger: GAGCAACCCCTCCACTAGCCAGGCCTGGTTGGGCCT...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTCCTTCAGGTCTGGGGTaGGGCCACTTGGACACAGTG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSPSGLG*GHLDTV
Trigger: CACTGTGTCCAAGTGGCCGCACCCCAGACCTGAAGG...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGAGCTGGGGTGCCATTaGGGCAGATCTCCATTGGTG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSELGCH*GRSPLV
Trigger: CACCAATGGAGATCTGCCTCAATGGCACCCCAGCTC...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTATGCGATGTCCAGGCTaGTGTGAGCACCGGCAAGGA +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSMRCPG*CEHRQG
Trigger: TCCTTGCCGGTGCTCACAGCAGCCTGGACATCGCAT...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTTCCACCATGCGGACCTaGGCACCACTCTGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSSTMRT*APLCSR
Trigger: TCTGCTACAGAGTGGTGCCCAGGTCCGCATGGTGGA...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACGAGGCAGATCTCCATTaGTGTTTCTTGATTATATCG +
Preference number: 4 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDEADLH*CFLIIS
Trigger: CGATATAATCAAGAAACACCAATGGAGATCTGCCTC...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR GCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTCTCTGTAGCAGAGACTaGAGATCAGCCAGAGGCCCA +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSLCSRD*RSARGP
Trigger: TGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAG...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTCCACCACCCAGAACTTaGTGTGCAGGACACCATGAG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSPPPRT*CAGHHE
Trigger: CTCATGGTGTCCTGCACACCAAGTTCTGGGTGGTGG...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTTCCCATAGAAACAGCTaGGTCATCAGGGCACCGAAG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSSHRNS*VIRAPK
Trigger: CTTCGGTGCCCTGATGACTCAGCTGTTTCTATGGGA...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGCACCTTCAGCTCCTaGTACATCAGTTTGGGCTTC +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSGTFSS*YISLGF
Trigger: GAAGCCCAAACTGATGTACCAGGAGCTGAAGGTGCC...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTTGTACTTGTTGTGGTTaGCACGGGCATAGGGGATTC +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSCTCCG*HGHRGF
Trigger: GAATCCCCTATGCCCGTGTCAACCACAACAAGTACA...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGAGGGCTCTTGCGTGTaGGTGTCATTATTTGTGAGG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSEGSCV*VSLFVR
Trigger: CCTCACAAATAATGACACCCACACGCAAGAGCCCTC...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR TCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTTCCATTGGTGTTTCTTaGTTATATCGGGTGTCAAAG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSSIGVS*LYRVSK
Trigger: CTTTGACACCCGATATAATCAAGAAACACCAATGGA...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CCA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGAGGCAGATCTCCATTaGTGTTTCTTGATTATATCG +
Preference number: 4 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSEADLH*CFLIIS
Trigger: CGATATAATCAAGAAACACCAATGGAGATCTGCCTC...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGCTGGGGTGCGGCCACTaGGACACAGTGGTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: PSSARSTGARVSGQWRWRLGCGH*DTVVGV
Trigger: CACCCCCACCACTGTGTCCAAGTGGCCGCACCCCAG...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGTGGCTAGTGGAGGGGTaGCTCGTGGTGGCATTGGGA +
Preference number: 5 (lower is better)
Translates to: PSSARSTGARVSGQWRWRWLVEG*LVVALG
Trigger: TCCCAATGCCACCACGAGCAACCCCTCCACTAGCCA...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCACCACGCCCAGCTCCTaGACCTGGGTCAGCGACCGC +
Preference number: 5 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSTTPSS*TWVSDR
Trigger: GCGGTCGCTGACCCAGGTCAAGGAGCTGGGCGTGGT...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGAGAGCTGGGGTGCCATaGAGGCAGATCTCCATTGGT +
Preference number: 5 (lower is better)
Translates to: PSSARSTGARVSGQWRWRRAGVP*RQISIG
Trigger: ACCAATGGAGATCTGCCTCAATGGCACCCCAGCTCT...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGGCGAGGCAGCTGCAGTaGTACATGACCACGCCCAGC +
Preference number: 5 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELARQLQ*YMTTPS
Trigger: GCTGGGCGTGGTCATGTACAACTGCAGCTGCCTCGC...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGCTGGGGTGCGGCCACTaGGACACAGTGGTGGGGGTG +
Preference number: 5 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGLGCGH*DTVVGV
Trigger: CACCCCCACCACTGTGTCCAAGTGGCCGCACCCCAG...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp CGCCAGGATCAGGACCAGGAGGACCCAGCGGGCTTTCTTCTCTGCTaGCTTCCATGCCTCGATTTCATTCAAGGGCAGTTCTCCCGCAGG +
Preference number: 5 (lower is better)
Translates to: RQDQDQEDPAGFLLC*LPCLDFIQGQFSRR
Trigger: CCTGCGGGAGAACTGCCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGCTGGGTCCTCCTGGTCCTGATCCTGGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
ENSMUST00000127240.8
ENSMUST00000150964.2
CDS-3UTR CAA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAAGGACCGCGGCCAGGTaGATGGGATGGAGCTACCTG +
Preference number: 5 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIRTAAR*MGWSYL
Trigger: CAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCT...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCGCATTGCCCACACTGTaGGCTGAGGTGTCGAGATCG +
Preference number: 5 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSALPTL*AEVSRS
Trigger: CGATCTCGACACCTCAGCCAACAGTGTGGGCAATGC...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAAGCAGGCGGCAGGCATaGCCCACACTGTTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GGGGSSRSIVESTEPHGISRRQA*PTLLAE
Trigger: CTCAGCCAACAGTGTGGGCAATGCCTGCCGCCTGCT...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 90 bp TGGCTGTATGGGGATTCCCAGTCTCTCAGGAAAACAGCCTCCAGCTaGCTGCGCAAGCCACCATGCCCGTTCTGTGTCACCAGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: WLYGDSQSLRKTASS*LRKPPCPFCVTSRE
Trigger: CTCCCTGCTGGTGACACAGAACGGGCATGGTGGCTTGCGCAGTCAGCTGGAGGCTGTTTTCCTGAGAGACTGGGAATCCCCATACAGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp TACCGCCAGGATCAGGACCAGGAGGACCCAGCGGGCTTTCTTCTCTaGTGCCTTCCATGCCTCGATTTCATTCAAGGGCAGTTCTCCCGC +
Preference number: 5 (lower is better)
Translates to: YRQDQDQEDPAGFLL*CLPCLDFIQGQFSR
Trigger: GCGGGAGAACTGCCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGCTGGGTCCTCCTGGTCCTGATCCTGGCGGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
ENSMUST00000127240.8
ENSMUST00000150964.2
CDS GCA 90 bp GGGTTTGCTCACAGCGATGCGAACCTTTACACCTCGAGGTGCCAGTaGCTGAAGCTGCTGAAGAACCTCTTCACCCTGCTGGGCAGAGGG +
Preference number: 5 (lower is better)
Translates to: GFAHSDANLYTSRCQ*LKLLKNLFTLLGRG
Trigger: CCCTCTGCCCAGCAGGGTGAAGAGGTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp GCGCAAGCCACCATGCCCGTTCTGTGTCACCAGCAGGGAGGTGCCTaGTGTCTCCGTGAAGTAGCTTCCAGACCAGTTGGAGGTTCCAAT +
Preference number: 5 (lower is better)
Translates to: AQATMPVLCHQQGGA*CLREVASRPVGGSN
Trigger: ATTGGAACCTCCAACTGGTCTGGAAGCTACTTCACGGAGACAGCAGGCACCTCCCTGCTGGTGACACAGAACGGGCATGGTGGCTTGCGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp TGTATGGGGATTCCCAGTCTCTCAGGAAAACAGCCTCCAGCTGACTaGGCAAGCCACCATGCCCGTTCTGTGTCACCAGCAGGGAGGTGC +
Preference number: 5 (lower is better)
Translates to: CMGIPSLSGKQPPAD*ASHHARSVSPAGRC
Trigger: GCACCTCCCTGCTGGTGACACAGAACGGGCATGGTGGCTTGCGCAGTCAGCTGGAGGCTGTTTTCCTGAGAGACTGGGAATCCCCATACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 90 bp AGGCGGCAGGCATTGCCCACACTGTTGGCTGAGGTGTCGAGATCGTaGCTGTATGGGGATTCCCAGTCTCTCAGGAAAACAGCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: RRQALPTLLAEVSRS*LYGDSQSLRKTASS
Trigger: GCTGGAGGCTGTTTTCCTGAGAGACTGGGAATCCCCATACAGCCACGATCTCGACACCTCAGCCAACAGTGTGGGCAATGCCTGCCGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp ACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTGTCAGCCAGAGGCCCATaGGGTTTGCTCACAGCGATG +
Preference number: 5 (lower is better)
Translates to: TRDRQRQGHGDSNQDPELSARGP*GLLTAM
Trigger: CATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGA...CAGCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGGCGAGGCAGCTGCAGTaGTACATGACCACGCCCAGC +
Preference number: 5 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGARQLQ*YMTTPS
Trigger: GCTGGGCGTGGTCATGTACAACTGCAGCTGCCTCGC...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCAGAGCTGGGGTGCCATaGAGGCAGATCTCCATTGGT +
Preference number: 5 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSRAGVP*RQISIG
Trigger: ACCAATGGAGATCTGCCTCAATGGCACCCCAGCTCT...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp CCCATTGGGTTTGCTCACAGCGATGCGAACCTTTACACCTCGAGGTaGCAGTGCCTGAAGCTGCTGAAGAACCTCTTCACCCTGCTGGGC +
Preference number: 5 (lower is better)
Translates to: PIGFAHSDANLYTSR*QCLKLLKNLFTLLG
Trigger: GCCCAGCAGGGTGAAGAGGTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp TCAGGAATGCTCTCCACCAGCACCGCCCTTCTCTGCTGCCTTCCATaGCTCGATTTCATTCAAGGGCAGTTCTCCCGCAGGCTCCTCAAC +
Preference number: 5 (lower is better)
Translates to: SGMLSTSTALLCCLP*LDFIQGQFSRRLLN
Trigger: GTTGAGGAGCCTGCGGGAGAACTGCCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAGAAGGGCGGTGCTGGTGGAGAGCATTCCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131106.8
CDS CCA 90 bp GGGCACCACTCTGTAGCAGAGACTGCAGATCAGCCAGAGGCCCATTaGGTTTGCTCACAGCGATGCGAACCTTTACACCTCGAGGTGCCA +
Preference number: 5 (lower is better)
Translates to: GHHSVAETADQPEAH*VCSQRCEPLHLEVP
Trigger: TGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAGTGGTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 90 bp GTTGTCATGAAGTGCAGCCAGGGAGAGCAGGAAGGACCGCATCGATaGATCAGAGTGTCCCCAGCAGCTGATGAGCAGGCGCACTTTGAC +
Preference number: 5 (lower is better)
Translates to: VVMKCSQGEQEGPHR*IRVSPAADEQAHFD
Trigger: GTCAAAGTGCGCCTGCTCATCAGCTGCTGGGGACACTCTGATCCATCGATGCGGTCCTTCCTGCTCTCCCTGGCTGCACTTCATGACAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACTGGCTAGTGGAGGGGTaGCTCGTGGTGGCATTGGGA +
Preference number: 5 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDWLVEG*LVVALG
Trigger: TCCCAATGCCACCACGAGCAACCCCTCCACTAGCCA...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATATCAGCCAGAGGCCCATaGGGTTTGCTCACAGCGATG +
Preference number: 5 (lower is better)
Translates to: GGGGSSRSIVESTEPHGISARGP*GLLTAM
Trigger: CATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGA...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGAGCAGGCGGCAGGCATaGCCCACACTGTTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMSRRQA*PTLLAE
Trigger: CTCAGCCAACAGTGTGGGCAATGCCTGCCGCCTGCT...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 90 bp CATGCCCGTTCTGTGTCACCAGCAGGGAGGTGCCTGCTGTCTCCGTaGAGTAGCTTCCAGACCAGTTGGAGGTTCCAATGTATGAGGCAC +
Preference number: 5 (lower is better)
Translates to: HARSVSPAGRCLLSP*SSFQTSWRFQCMRH
Trigger: GTGCCTCATACATTGGAACCTCCAACTGGTCTGGAAGCTACTTCACGGAGACAGCAGGCACCTCCCTGCTGGTGACACAGAACGGGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp GAGACTGCAGATCAGCCAGAGGCCCATTGGGTTTGCTCACAGCGATaGGAACCTTTACACCTCGAGGTGCCAGTGCCTGAAGCTGCTGAA +
Preference number: 5 (lower is better)
Translates to: ETADQPEAHWVCSQR*EPLHLEVPVPEAAE
Trigger: TTCAGCAGCTTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp CACTCTGTAGCAGAGACTGCAGATCAGCCAGAGGCCCATTGGGTTTaGTCACAGCGATGCGAACCTTTACACCTCGAGGTGCCAGTGCCT +
Preference number: 5 (lower is better)
Translates to: HSVAETADQPEAHWV*SQRCEPLHLEVPVP
Trigger: AGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 90 bp ACTTGGTGTGCAGGACACCATGAGTCAGCTTCTGCATGTCCACCATaGGGACCTGGGCACCACTCTGTAGCAGAGACTGCAGATCAGCCA +
Preference number: 5 (lower is better)
Translates to: TWCAGHHESASACPP*GPGHHSVAETADQP
Trigger: TGGCTGATCTGCAGTCTCTGCTACAGAGTGGTGCCCAGGTCCGCATGGTGGACATGCAGAAGCTGACTCATGGTGTCCTGCACACCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCCCATTGGGTTaGCTCACAGCGATGCGAACC +
Preference number: 5 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDRGPLG*LTAMRT
Trigger: GGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCT...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCCAGCTCTGCTAGGTCCACAGGGGCCAGAGTGTCAGGCCAGTGGCGGTGGAGGCTCCATTGGTGTTTCTaGATTATATCGGGTGTCAAA +
Preference number: 5 (lower is better)
Translates to: PSSARSTGARVSGQWRWRLHWCF*IISGVK
Trigger: TTTGACACCCGATATAATCAAGAAACACCAATGGAG...CCTCCACCGCCACTGGCCTGACACTCTGGCCCCTGTGGACCTAGCAGAGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGGCACTGTCCACCACGTaGAGCAGAGCCTTCAGGTCT +
Preference number: 5 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGALSTT*SRAFRS
Trigger: AGACCTGAAGGCTCTGCTCAACGTGGTGGACAGTGC...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAATGAGCAGGCGCACTTaGACGCCTCGTTCATACGCA +
Preference number: 5 (lower is better)
Translates to: GGGGSSRSIVESTEPHGIMSRRT*TPRSYA
Trigger: TGCGTATGAACGAGGCGTCAAAGTGCGCCTGCTCAT...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp CCACACGGGATAGACAGAGGCAAGGGCATGGGGACAGTAACCAGGACCCAGAGCTCAGTCACCATGTACTaGTTGTGGTTGACACGGGCA +
Preference number: 5 (lower is better)
Translates to: PHGIDRGKGMGTVTRTQSSVTMY*LWLTRA
Trigger: TGCCCGTGTCAACCACAACAAGTACATGGTGACTGA...GCTCTGGGTCCTGGTTACTGTCCCCATGCCCTTGCCTCTGTCTATCCCGTGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACGCATTGCCCACACTGTaGGCTGAGGTGTCGAGATCG +
Preference number: 5 (lower is better)
Translates to: GGGSSRSIVESTEPHGIDALPTL*AEVSRS
Trigger: CGATCTCGACACCTCAGCCAACAGTGTGGGCAATGC...GTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGAGAGGCCCATTGGGTTaGCTCACAGCGATGCGAACC +
Preference number: 5 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMRGPLG*LTAMRT
Trigger: GGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCT...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGGCACTGTCCACCACGTaGAGCAGAGCCTTCAGGTCT +
Preference number: 5 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMALSTT*SRAFRS
Trigger: AGACCTGAAGGCTCTGCTCAACGTGGTGGACAGTGC...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGATGAGCAGGCGCACTTaGACGCCTCGTTCATACGCA +
Preference number: 5 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGMSRRT*TPRSYA
Trigger: TGCGTATGAACGAGGCGTCAAAGTGCGCCTGCTCAT...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 90 bp TGGTGTTTCTTGATTATATCGGGTGTCAAAGGACCGCGGCCAGGTTaGTGGGATGGAGCTACCTGCCTGGCCCAGGAACCAATAGGCTTC +
Preference number: 5 (lower is better)
Translates to: WCFLIISGVKGPRPG*WDGATCLAQEPIGF
Trigger: GAAGCCTATTGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAGAAACACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 90 bp GCCAGAGCTGGGGTGCCATTGAGGCAGATCTCCATTGGTGTTTCTTaGTTATATCGGGTGTCAAAGGACCGCGGCCAGGTTGATGGGATG +
Preference number: 5 (lower is better)
Translates to: ARAGVPLRQISIGVS*LYRVSKDRGQVDGM
Trigger: CATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAGAAACACCAATGGAGATCTGCCTCAATGGCACCCCAGCTCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 90 bp GTGGTGGGGGTGCACTCGCTAGGTAGGCCAGAGCTGGGGTGCCATTaGGGCAGATCTCCATTGGTGTTTCTTGATTATATCGGGTGTCAA +
Preference number: 5 (lower is better)
Translates to: VVGVHSLGRPELGCH*GRSPLVFLDYIGCQ
Trigger: TTGACACCCGATATAATCAAGAAACACCAATGGAGATCTGCCTCAATGGCACCCCAGCTCTGGCCTACCTAGCGAGTGCACCCCCACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGTTGCTCGTGGTGGCATaGGGAAACTCCAGACCCTCA +
Preference number: 5 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMLLVVA*GNSRPS
Trigger: TGAGGGTCTGGAGTTTCCCAATGCCACCACGAGCAA...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GGCGGTGGAGGTAGCAGCAGGAGTATAGTGGAGAGTACAGAGCCACACGGGATATCAGTCACCATGTACTaGTTGTGGTTGACACGGGCA +
Preference number: 5 (lower is better)
Translates to: GGGGSSRSIVESTEPHGISVTMY*LWLTRA
Trigger: TGCCCGTGTCAACCACAACAAGTACATGGTGACTGA...TATCCCGTGTGGCTCTGTACTCTCCACTATACTCCTGCTGCTACCTCCACCGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 90 bp CTTGATTATATCGGGTGTCAAAGGACCGCGGCCAGGTTGATGGGATaGAGCTACCTGCCTGGCCCAGGAACCAATAGGCTTCAAAGATCT +
Preference number: 5 (lower is better)
Translates to: LDYIGCQRTAARLMG*SYLPGPGTNRLQRS
Trigger: AGATCTTTGAAGCCTATTGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp GAGTATAGTGGAGAGTACAGAGCCACACGGGATAGACAGAGGCAAGGGCATGGGGGGCTGGGCGCTGATTaGGTCCAAATAGATGTAAGT +
Preference number: 5 (lower is better)
Translates to: EYSGEYRATRDRQRQGHGGLGAD*VQIDVS
Trigger: ACTTACATCTATTTGGACCAAATCAGCGCCCAGCCC...CCCATGCCCTTGCCTCTGTCTATCCCGTGTGGCTCTGTACTCTCCACTATACTC
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTAGGACCGCGGCCAGGTaGATGGGATGGAGCTACCTG +
Preference number: 5 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSRTAAR*MGWSYL
Trigger: CAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCT...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TACAGACAATTATTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTTTGCTCGTGGTGGCATaGGGAAACTCCAGACCCTCA +
Preference number: 5 (lower is better)
Translates to: YRQLFTYNLGPLGVGQRSLLVVA*GNSRPS
Trigger: TGAGGGTCTGGAGTTTCCCAATGCCACCACGAGCAA...AGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAATAATTGTCTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS-3UTR CAA 90 bp TTTACTTATAATCTTGGCCCTTTGGGGGTGGGCCAAAGGTCTGGGCCCAGCATGCTCCATTGGTGTTTCTaGATTATATCGGGTGTCAAA +
Preference number: 5 (lower is better)
Translates to: FTYNLGPLGVGQRSGPSMLHWCF*IISGVK
Trigger: TTTGACACCCGATATAATCAAGAAACACCAATGGAG...CATGCTGGGCCCAGACCTTTGGCCCACCCCCAAAGGGCCAAGATTATAAGTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp GGCACTGTCCACCACGTTGAGCAGAGCCTTCAGGTCTaGGGTGCGGCCACTTGGACACAGTGGTGGGGGTGC +
Preference number: 6 (lower is better)
Translates to: GTVHHVEQSLQV*GAATWTQWWGC
Trigger: GCACCCCCACCACTGTGTCCAAGTGGCCGCACCCCAGACCTGAAGGCTCTGCTCAACGTGGTGGACAGTGCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 90 bp AGGCCCAACCAGGCCTGGCTAGTGGAGGGGTTGCTCGTGGTGGCATaGGGAAACTCCAGACCCTCAGGAATGCTCTCCACCAGCACCGCC +
Preference number: 6 (lower is better)
Translates to: RPNQAWLVEGLLVVA*GNSRPSGMLSTSTA
Trigger: GGCGGTGCTGGTGGAGAGCATTCCTGAGGGTCTGGAGTTTCCCAATGCCACCACGAGCAACCCCTCCACTAGCCAGGCCTGGTTGGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp TCGTGGTGGCATTGGGAAACTCCAGACCCTCAGGAATaGTCTCCACCAGCACCGCCTCGCAGGGGTCATAGC +
Preference number: 6 (lower is better)
Translates to: SWWHWETPDPQE*SPPAPPRRGHS
Trigger: GCTATGACCCCTGCGAGGCGGTGCTGGTGGAGAGCATTCCTGAGGGTCTGGAGTTTCCCAATGCCACCACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
ENSMUST00000127240.8
CDS CAA 72 bp CAGGCCTGGCTAGTGGAGGGGTTGCTCGTGGTGGCATaGGGAAACTCCAGACCCTCAGGAATGCTCTCCACC +
Preference number: 6 (lower is better)
Translates to: QAWLVEGLLVVA*GNSRPSGMLST
Trigger: GGTGGAGAGCATTCCTGAGGGTCTGGAGTTTCCCAATGCCACCACGAGCAACCCCTCCACTAGCCAGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 72 bp AAGATCTTGGTGAGGTCCCGGGCGAGGCAGCTGCAGTaGTACATGACCACGCCCAGCTCCTTGACCTGGGTC +
Preference number: 6 (lower is better)
Translates to: KILVRSRARQLQ*YMTTPSSLTWV
Trigger: GACCCAGGTCAAGGAGCTGGGCGTGGTCATGTACAACTGCAGCTGCCTCGCCCGGGACCTCACCAAGATCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp GGGGATTCCCAGTCTCTCAGGAAAACAGCCTCCAGCTaGCTGCGCAAGCCACCATGCCCGTTCTGTGTCACC +
Preference number: 6 (lower is better)
Translates to: GDSQSLRKTASS*LRKPPCPFCVT
Trigger: GGTGACACAGAACGGGCATGGTGGCTTGCGCAGTCAGCTGGAGGCTGTTTTCCTGAGAGACTGGGAATCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp ATCGGGTGTCAAAGGACCGCGGCCAGGTTGATGGGATaGAGCTACCTGCCTGGCCCAGGAACCAATAGGCTT +
Preference number: 6 (lower is better)
Translates to: IGCQRTAARLMG*SYLPGPGTNRL
Trigger: AAGCCTATTGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 90 bp CCACTCTGTAGCAGAGACTGCAGATCAGCCAGAGGCCCATTGGGTTaGCTCACAGCGATGCGAACCTTTACACCTCGAGGTGCCAGTGCC +
Preference number: 6 (lower is better)
Translates to: PLCSRDCRSARGPLG*LTAMRTFTPRGASA
Trigger: GGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 90 bp TGGGCACCACTCTGTAGCAGAGACTGCAGATCAGCCAGAGGCCCATaGGGTTTGCTCACAGCGATGCGAACCTTTACACCTCGAGGTGCC +
Preference number: 6 (lower is better)
Translates to: WAPLCSRDCRSARGP*GLLTAMRTFTPRGA
Trigger: GGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAGTGGTGCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp TCAAAGCAGGCGGCAGGCATTGCCCACACTGTTGGCTaGGGTGTCGAGATCGTGGCTGTATGGGGATTCCCA +
Preference number: 6 (lower is better)
Translates to: SKQAAGIAHTVG*GVEIVAVWGFP
Trigger: TGGGAATCCCCATACAGCCACGATCTCGACACCTCAGCCAACAGTGTGGGCAATGCCTGCCGCCTGCTTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp ACCATGCGGACCTGGGCACCACTCTGTAGCAGAGACTaGAGATCAGCCAGAGGCCCATTGGGTTTGCTCACA +
Preference number: 6 (lower is better)
Translates to: TMRTWAPLCSRD*RSARGPLGLLT
Trigger: TGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAGTGGTGCCCAGGTCCGCATGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp ACCATGCCCGTTCTGTGTCACCAGCAGGGAGGTGCCTaGTGTCTCCGTGAAGTAGCTTCCAGACCAGTTGGA +
Preference number: 6 (lower is better)
Translates to: TMPVLCHQQGGA*CLREVASRPVG
Trigger: TCCAACTGGTCTGGAAGCTACTTCACGGAGACAGCAGGCACCTCCCTGCTGGTGACACAGAACGGGCATGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 72 bp CTTGATTATATCGGGTGTCAAAGGACCGCGGCCAGGTaGATGGGATGGAGCTACCTGCCTGGCCCAGGAACC +
Preference number: 6 (lower is better)
Translates to: LDYIGCQRTAAR*MGWSYLPGPGT
Trigger: GGTTCCTGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp TTGATTATATCGGGTGTCAAAGGACCGCGGCCAGGTTaGTGGGATGGAGCTACCTGCCTGGCCCAGGAACCA +
Preference number: 6 (lower is better)
Translates to: LIISGVKGPRPG*WDGATCLAQEP
Trigger: TGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp CAGGACCAGGAGGACCCAGCGGGCTTTCTTCTCTGCTaGCTTCCATGCCTCGATTTCATTCAAGGGCAGTTC +
Preference number: 6 (lower is better)
Translates to: QDQEDPAGFLLC*LPCLDFIQGQF
Trigger: GAACTGCCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGCTGGGTCCTCCTGGTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
ENSMUST00000127240.8
ENSMUST00000150964.2
CDS GCA 72 bp GATCAGGACCAGGAGGACCCAGCGGGCTTTCTTCTCTaGTGCCTTCCATGCCTCGATTTCATTCAAGGGCAG +
Preference number: 6 (lower is better)
Translates to: DQDQEDPAGFLL*CLPCLDFIQGQ
Trigger: CTGCCCTTGAATGAAATCGAGGCATGGAAGGCAGCAGAGAAGAAAGCCCGCTGGGTCCTCCTGGTCCTGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
ENSMUST00000127240.8
ENSMUST00000150964.2
CDS GCA 72 bp CACAGCGATGCGAACCTTTACACCTCGAGGTGCCAGTaGCTGAAGCTGCTGAAGAACCTCTTCACCCTGCTG +
Preference number: 6 (lower is better)
Translates to: HSDANLYTSRCQ*LKLLKNLFTLL
Trigger: CAGCAGGGTGAAGAGGTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp GATCAGCCAGAGGCCCATTGGGTTTGCTCACAGCGATaGGAACCTTTACACCTCGAGGTGCCAGTGCCTGAA +
Preference number: 6 (lower is better)
Translates to: DQPEAHWVCSQR*EPLHLEVPVPE
Trigger: TTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp GCAGAGACTGCAGATCAGCCAGAGGCCCATTGGGTTTaGTCACAGCGATGCGAACCTTTACACCTCGAGGTG +
Preference number: 6 (lower is better)
Translates to: AETADQPEAHWV*SQRCEPLHLEV
Trigger: CACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp TTCATACGCAGCCCGTCTCAGCCCATCATCGATCGCTaGCCAGAACCTGCGTGGATGAGAGAACTCCATGGT +
Preference number: 6 (lower is better)
Translates to: FIRSPSQPIIDR*PEPAWMRELHG
Trigger: ACCATGGAGTTCTCTCATCCACGCAGGTTCTGGCCAGCGATCGATGATGGGCTGAGACGGGCTGCGTATGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp TCTGTGTCACCAGCAGGGAGGTGCCTGCTGTCTCCGTaGAGTAGCTTCCAGACCAGTTGGAGGTTCCAATGT +
Preference number: 6 (lower is better)
Translates to: SVSPAGRCLLSP*SSFQTSWRFQC
Trigger: ACATTGGAACCTCCAACTGGTCTGGAAGCTACTTCACGGAGACAGCAGGCACCTCCCTGCTGGTGACACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 72 bp AGCAGAGACTGCAGATCAGCCAGAGGCCCATTGGGTTaGCTCACAGCGATGCGAACCTTTACACCTCGAGGT +
Preference number: 6 (lower is better)
Translates to: SRDCRSARGPLG*LTAMRTFTPRG
Trigger: ACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 90 bp CTGAAGCTGCTGAAGAACCTCTTCACCCTGCTGGGCAGAGGGCTCTaGCGTGTGGGTGTCATTATTTGTGAGGGTCCAGTAGAAGGATGC +
Preference number: 6 (lower is better)
Translates to: LKLLKNLFTLLGRGL*RVGVIICEGPVEGC
Trigger: GCATCCTTCTACTGGACCCTCACAAATAATGACACCCACACGCAAGAGCCCTCTGCCCAGCAGGGTGAAGAGGTTCTTCAGCAGCTTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp ATGAGGCACGTTCAGTCACCATGTACTTGTTGTGGTTaGCACGGGCATAGGGGATTCGGGCCTGGGACTCAT +
Preference number: 6 (lower is better)
Translates to: MRHVQSPCTCCG*HGHRGFGPGTH
Trigger: ATGAGTCCCAGGCCCGAATCCCCTATGCCCGTGTCAACCACAACAAGTACATGGTGACTGAACGTGCCTCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS GCA 72 bp TTTGCTCACAGCGATGCGAACCTTTACACCTCGAGGTaGCAGTGCCTGAAGCTGCTGAAGAACCTCTTCACC +
Preference number: 6 (lower is better)
Translates to: FAHSDANLYTSR*QCLKLLKNLFT
Trigger: GGTGAAGAGGTTCTTCAGCAGCTTCAGGCACTGGCACCTCGAGGTGTAAAGGTTCGCATCGCTGTGAGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp TCTGTAGCAGAGACTGCAGATCAGCCAGAGGCCCATTaGGTTTGCTCACAGCGATGCGAACCTTTACACCTC +
Preference number: 6 (lower is better)
Translates to: SVAETADQPEAH*VCSQRCEPLHL
Trigger: GAGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp CCAGGTAGAAGTGGGTCTGATCCACCACCCAGAACTTaGTGTGCAGGACACCATGAGTCAGCTTCTGCATGT +
Preference number: 6 (lower is better)
Translates to: PGRSGSDPPPRT*CAGHHESASAC
Trigger: ACATGCAGAAGCTGACTCATGGTGTCCTGCACACCAAGTTCTGGGTGGTGGATCAGACCCACTTCTACCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp GCATTGCCCACACTGTTGGCTGAGGTGTCGAGATCGTaGCTGTATGGGGATTCCCAGTCTCTCAGGAAAACA +
Preference number: 6 (lower is better)
Translates to: ALPTLLAEVSRS*LYGDSQSLRKT
Trigger: TGTTTTCCTGAGAGACTGGGAATCCCCATACAGCCACGATCTCGACACCTCAGCCAACAGTGTGGGCAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 72 bp CTCTGTAGCAGAGACTGCAGATCAGCCAGAGGCCCATaGGGTTTGCTCACAGCGATGCGAACCTTTACACCT +
Preference number: 6 (lower is better)
Translates to: LCSRDCRSARGP*GLLTAMRTFTP
Trigger: AGGTGTAAAGGTTCGCATCGCTGTGAGCAAACCCAATGGGCCTCTGGCTGATCTGCAGTCTCTGCTACAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 90 bp TTGGTGTTTCTTGATTATATCGGGTGTCAAAGGACCGCGGCCAGGTaGATGGGATGGAGCTACCTGCCTGGCCCAGGAACCAATAGGCTT +
Preference number: 6 (lower is better)
Translates to: LVFLDYIGCQRTAAR*MGWSYLPGPGTNRL
Trigger: AAGCCTATTGGTTCCTGGGCCAGGCAGGTAGCTCCATCCCATCAACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAGAAACACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp GGGGTGCCATTGAGGCAGATCTCCATTGGTGTTTCTTaGTTATATCGGGTGTCAAAGGACCGCGGCCAGGTT +
Preference number: 6 (lower is better)
Translates to: GVPLRQISIGVS*LYRVSKDRGQV
Trigger: AACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAGAAACACCAATGGAGATCTGCCTCAATGGCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CCA 72 bp GGCCAGAGCTGGGGTGCCATTGAGGCAGATCTCCATTaGTGTTTCTTGATTATATCGGGTGTCAAAGGACCG +
Preference number: 6 (lower is better)
Translates to: GQSWGAIEADLH*CFLIISGVKGP
Trigger: CGGTCCTTTGACACCCGATATAATCAAGAAACACCAATGGAGATCTGCCTCAATGGCACCCCAGCTCTGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS CAA 72 bp TGGGGTGCCATTGAGGCAGATCTCCATTGGTGTTTCTaGATTATATCGGGTGTCAAAGGACCGCGGCCAGGT +
Preference number: 6 (lower is better)
Translates to: WGAIEADLHWCF*IISGVKGPRPG
Trigger: ACCTGGCCGCGGTCCTTTGACACCCGATATAATCAAGAAACACCAATGGAGATCTGCCTCAATGGCACCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8
CDS TCA 72 bp GTGCACTCGCTAGGTAGGCCAGAGCTGGGGTGCCATTaGGGCAGATCTCCATTGGTGTTTCTTGATTATATC +
Preference number: 6 (lower is better)
Translates to: VHSLGRPELGCH*GRSPLVFLDYI
Trigger: GATATAATCAAGAAACACCAATGGAGATCTGCCTCAATGGCACCCCAGCTCTGGCCTACCTAGCGAGTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000117095.8
ENSMUST00000117611.8