Pregenerated sensors for PLAC9A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095304Ensembl transcript IDs: ENSMUST00000052286.16, ENSMUST00000183431.8, ENSMUST00000183725.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTTTTGACAGTCTCCTTGGTGGCAGTGGCTGCTGTTTTGTGGCCTaGGCAGCAAGGCGGCATAATGGGCCTTCTGTGCTTGGTTACCAC | + |
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Preference number: 1 (lower is better) Translates to: VFDSLLGGSGCCFVA*AARRHNGPSVLGYH Trigger: GTGGTAACCAAGCACAGAAGGCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACTGTCAAAAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 90 bp | GAGCTTTTATTTCACACAAAGGTGGGGCAGGAAGGCAGGAAGACCTaGCTTGGTTCTCTGAGGGATGACTTCAGCTGGCAGGCTCCACCA | + |
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Preference number: 1 (lower is better) Translates to: ELLFHTKVGQEGRKT*LGSLRDDFSWQAPP Trigger: TGGTGGAGCCTGCCAGCTGAAGTCATCCCTCAGAGAACCAAGCCAGGTCTTCCTGCCTTCCTGCCCCACCTTTGTGTGAAATAAAAGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000052286.16 ENSMUST00000183431.8 ENSMUST00000183725.2 |
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| 3UTR CCA 90 bp | CTTGTGTTTTTGACAGTCTCCTTGGTGGCAGTGGCTGCTGTTTTGTaGCCTGGGCAGCAAGGCGGCATAATGGGCCTTCTGTGCTTGGTT | + |
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Preference number: 1 (lower is better) Translates to: LVFLTVSLVAVAAVL*PGQQGGIMGLLCLV Trigger: AACCAAGCACAGAAGGCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACTGTCAAAAACACAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 90 bp | CAAGAAGGAGCTGGAGCTGCGGCAACAGAGGTCATGGCTAGCAGATaGGTCCAAATCGGAGCTTTTATTTCACACAAAGGTGGGGCAGGA | + |
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Preference number: 1 (lower is better) Translates to: QEGAGAAATEVMASR*VQIGAFISHKGGAG Trigger: TCCTGCCCCACCTTTGTGTGAAATAAAAGCTCCGATTTGGACCCATCTGCTAGCCATGACCTCTGTTGCCGCAGCTCCAGCTCCTTCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 90 bp | AGCTCTAAGGACTTGTCTGGCGAAAGCCTGATACAGAAGGATTCGTaGTCCCATTCACAGAAGCTGCCTACCATGGGCAAGTCTAGGAAC | + |
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Preference number: 1 (lower is better) Translates to: SSKDLSGESLIQKDS*SHSQKLPTMGKSRN Trigger: GTTCCTAGACTTGCCCATGGTAGGCAGCTTCTGTGAATGGGACCACGAATCCTTCTGTATCAGGCTTTCGCCAGACAAGTCCTTAGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR TCA 90 bp | AAGGGAAGTGACTCTTGTATAGGCTCAGATTTCTTTCTGGGGTGTTaGAAACGTCCTGGAATTAATGGTGATGACTCCTCAGGCACGCTG | + |
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Preference number: 1 (lower is better) Translates to: KGSDSCIGSDFFLGC*KRPGINGDDSSGTL Trigger: CAGCGTGCCTGAGGAGTCATCACCATTAATTCCAGGACGTTTTCAACACCCCAGAAAGAAATCTGAGCCTATACAAGAGTCACTTCCCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR GCA 90 bp | CCATGGGCAAGTCTAGGAACACACACTGTTGCTAGAGTGTTGGTGTGGGGAGAGCACACAACTCCTTACTaGCAGGAGGGCAGGGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: PWASLGTHTVARVLVWGEHTTPY*QEGRAG Trigger: CCCTGCCCTGCCCTCCTGGCAGTAAGGAGTTGTGTG...CTCTCCCCACACCAACACTCTAGCAACAGTGTGTGTTCCTAGACTTGCCCATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CCA 90 bp | GGTTACCACTCTAGGCCTCTGGTGTCTCACATCCTGTCAGTCAGTTCCCAGGGTAGGGATGACTTCAGCTaGCAGGCTCCACCATCCCTG | + |
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Preference number: 2 (lower is better) Translates to: GYHSRPLVSHILSVSSQGRDDFS*QAPPSL Trigger: CAGGGATGGTGGAGCCTGCCAGCTGAAGTCATCCCT...ACCCTGGGAACTGACTGACAGGATGTGAGACACCAGAGGCCTAGAGTGGTAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CAA 90 bp | GATCTTGTGTTTTTGACAGTCTCCTTGGTGGCAGTGGCTGCTGTTTaGTGGCCTGGGCAGCAAGGCGGCATAATGGGCCTTCTGTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: DLVFLTVSLVAVAAV*WPGQQGGIMGLLCL Trigger: CAAGCACAGAAGGCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACTGTCAAAAACACAAGATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR TCA 90 bp | AGGCGGCATAATGGGCCTTCTGTGCTTGGTTACCACTCTAGGCCTCTGGTGTCTCCCAGGGTCTGTCTCTaGATTAGAAAGTTGGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: RRHNGPSVLGYHSRPLVSPRVCL*IRKLEV Trigger: CACTTCCAACTTTCTAATTCAGAGACAGACCCTGGG...AGACACCAGAGGCCTAGAGTGGTAACCAAGCACAGAAGGCCCATTATGCCGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR TCA 90 bp | GGAATTAATGGTGATGACTCCTCAGGCACGCTGGAAGCCACAGAATTTGTGCAGCCAGCTCAGTCTACATaGTGTGCCATTCCCCCGAGT | + |
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Preference number: 2 (lower is better) Translates to: GINGDDSSGTLEATEFVQPAQST*CAIPPS Trigger: ACTCGGGGGAATGGCACATCATGTAGACTGAGCTGG...CTGCACAAATTCTGTGGCTTCCAGCGTGCCTGAGGAGTCATCACCATTAATTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR TCA 90 bp | CCATGGGCAAGTCTAGGAACACACACTGTTGCTAGAGTGTTGGTGTGGGGAGAGTGGATCTTGTGTTTTTaGCAGTCTCCTTGGTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: PWASLGTHTVARVLVWGEWILCF*QSPWWQ Trigger: CTGCCACCAAGGAGACTGTCAAAAACACAAGATCCA...CTCTCCCCACACCAACACTCTAGCAACAGTGTGTGTTCCTAGACTTGCCCATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR GCA 90 bp | CCATTATATTACACATTATACAGATGGGCGTGGTCCGCTGATACACTAGAACGTAGAAGGAGCTGGAGCTaGGGCAACAGAGGTCATGGC | + |
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Preference number: 2 (lower is better) Translates to: PLYYTLYRWAWSADTLERRRSWS*GNRGHG Trigger: GCCATGACCTCTGTTGCCGCAGCTCCAGCTCCTTCT...ACGTTCTAGTGTATCAGCGGACCACGCCCATCTGTATAATGTGTAATATAATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CCA 90 bp | CCATTATATTACACATTATACAGATGGGCGTGGTCCGCTGATACACTAGAACGTGCTAGAGTGTTGGTGTaGGGAGAGGTGGAAGGGAAG | + |
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Preference number: 2 (lower is better) Translates to: PLYYTLYRWAWSADTLERARVLV*GEVEGK Trigger: CTTCCCTTCCACCTCTCCCCACACCAACACTCTAGC...ACGTTCTAGTGTATCAGCGGACCACGCCCATCTGTATAATGTGTAATATAATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR GCA 90 bp | AACTGGAAATGCATCTCTTTGGATTTACAACCAGGGAACAGGATTCTTAATGCAGTGTGGGGTTCAGGGTaGAAGAAGGAGCTGGAGCTG | + |
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Preference number: 2 (lower is better) Translates to: NWKCISLDLQPGNRILNAVWGSG*KKELEL Trigger: CAGCTCCAGCTCCTTCTTGCACCCTGAACCCCACAC...TGCATTAAGAATCCTGTTCCCTGGTTGTAAATCCAAAGAGATGCATTTCCAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CCA 90 bp | CCATTATATTACACATTATACAGATGGGCGTGGTCCGCTGATACACTAGAACGTGCTAGAACAGCAGTGTaGGGTTCAGGGTGCAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: PLYYTLYRWAWSADTLERARTAV*GSGCKK Trigger: CTTCTTGCACCCTGAACCCCACACTGCTGTTCTAGC...ACGTTCTAGTGTATCAGCGGACCACGCCCATCTGTATAATGTGTAATATAATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CCA 90 bp | ACTGGAAATGCATCTCTTTGGATTTACAACCAGGGAACAGGATTCTTAATGCACGAAGGCAGGAAGACCTaGCTTGGTTCTCTGAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: TGNASLWIYNQGTGFLMHEGRKT*LGSLRD Trigger: ATCCCTCAGAGAACCAAGCCAGGTCTTCCTGCCTTC...GTGCATTAAGAATCCTGTTCCCTGGTTGTAAATCCAAAGAGATGCATTTCCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | ACAGGTCACCCAGGTCCACGTGCTAGAACAGCAGTGTaGGGTTCAGGGTGCAAGAAGGAGCTGGAGCTGCGG | + |
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Preference number: 3 (lower is better) Translates to: TGHPGPRARTAV*GSGCKKELELR Trigger: CCGCAGCTCCAGCTCCTTCTTGCACCCTGAACCCCACACTGCTGTTCTAGCACGTGGACCTGGGTGACCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | AGTCTCCTTGGTGGCAGTGGCTGCTGTTTTGTGGCCTaGGCAGCAAGGCGGCATAATGGGCCTTCTGTGCTT | + |
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Preference number: 3 (lower is better) Translates to: SLLGGSGCCFVA*AARRHNGPSVL Trigger: AAGCACAGAAGGCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | TTGACAGTCTCCTTGGTGGCAGTGGCTGCTGTTTTGTaGCCTGGGCAGCAAGGCGGCATAATGGGCCTTCTG | + |
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Preference number: 3 (lower is better) Translates to: LTVSLVAVAAVL*PGQQGGIMGLL Trigger: CAGAAGGCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACTGTCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CAA 90 bp | GGAATTAATGGTGATGACTCCTCAGGCACGCTGGAAGCCACAGAATTTGTGCAGGCAGTGGCTGCTGTTTaGTGGCCTGGGCAGCAAGGC | + |
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Preference number: 3 (lower is better) Translates to: GINGDDSSGTLEATEFVQAVAAV*WPGQQG Trigger: GCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGC...CTGCACAAATTCTGTGGCTTCCAGCGTGCCTGAGGAGTCATCACCATTAATTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | TTTCACACAAAGGTGGGGCAGGAAGGCAGGAAGACCTaGCTTGGTTCTCTGAGGGATGACTTCAGCTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: FHTKVGQEGRKT*LGSLRDDFSWQ Trigger: CTGCCAGCTGAAGTCATCCCTCAGAGAACCAAGCCAGGTCTTCCTGCCTTCCTGCCCCACCTTTGTGTGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052286.16 ENSMUST00000183431.8 ENSMUST00000183725.2 |
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| 3UTR CCA 72 bp | ATGGGCCTTCTGTGCTTGGTTACCACTCTAGGCCTCTaGTGTCTCACATCCTGTCAGTCAGTTCCCAGGGTC | + |
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Preference number: 3 (lower is better) Translates to: MGLLCLVTTLGL*CLTSCQSVPRV Trigger: GACCCTGGGAACTGACTGACAGGATGTGAGACACCAGAGGCCTAGAGTGGTAACCAAGCACAGAAGGCCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | AGTCAGTTCCCAGGGTCTGTCTCTGAATTAGAAAGTTaGAAGTGCGGTTGCACAGGTCACCCAGGTCCACGT | + |
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Preference number: 3 (lower is better) Translates to: SQFPGSVSELES*KCGCTGHPGPR Trigger: ACGTGGACCTGGGTGACCTGTGCAACCGCACTTCCAACTTTCTAATTCAGAGACAGACCCTGGGAACTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | GACTTGTCTGGCGAAAGCCTGATACAGAAGGATTCGTaGTCCCATTCACAGAAGCTGCCTACCATGGGCAAG | + |
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Preference number: 3 (lower is better) Translates to: DLSGESLIQKDS*SHSQKLPTMGK Trigger: CTTGCCCATGGTAGGCAGCTTCTGTGAATGGGACCACGAATCCTTCTGTATCAGGCTTTCGCCAGACAAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | AGGATTCGTGGTCCCATTCACAGAAGCTGCCTACCATaGGCAAGTCTAGGAACACACACTGTTGCTAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: RIRGPIHRSCLP*ASLGTHTVARV Trigger: CACTCTAGCAACAGTGTGTGTTCCTAGACTTGCCCATGGTAGGCAGCTTCTGTGAATGGGACCACGAATCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CAA 90 bp | TGGGGTGTTGAAAACGTCCTGGAATTAATGGTGATGACTCCTCAGGCACGCTGGTTGGATCTTGTGTTTTaGACAGTCTCCTTGGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: WGVENVLELMVMTPQARWLDLVF*TVSLVA Trigger: TGCCACCAAGGAGACTGTCAAAAACACAAGATCCAA...CCAGCGTGCCTGAGGAGTCATCACCATTAATTCCAGGACGTTTTCAACACCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR-3UTR CAA 90 bp | TGGGGTGTTGAAAACGTCCTGGAATTAATGGTGATGACTCCTCAGGCACGCTGGTGGAAATGCATCTCTTaGGATTTACAACCAGGGAAC | + |
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Preference number: 3 (lower is better) Translates to: WGVENVLELMVMTPQARWWKCIS*DLQPGN Trigger: GTTCCCTGGTTGTAAATCCAAAGAGATGCATTTCCA...CCAGCGTGCCTGAGGAGTCATCACCATTAATTCCAGGACGTTTTCAACACCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR TCA 72 bp | GACTCTTGTATAGGCTCAGATTTCTTTCTGGGGTGTTaGAAACGTCCTGGAATTAATGGTGATGACTCCTCA | + |
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Preference number: 3 (lower is better) Translates to: DSCIGSDFFLGC*KRPGINGDDSS Trigger: TGAGGAGTCATCACCATTAATTCCAGGACGTTTTCAACACCCCAGAAAGAAATCTGAGCCTATACAAGAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CCA 72 bp | TTTGCACCATTATATTACACATTATACAGATGGGCGTaGTCCGCTGATACACTAGAACGTCATTTTGCACAT | + |
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Preference number: 3 (lower is better) Translates to: FAPLYYTLYRWA*SADTLERHFAH Trigger: ATGTGCAAAATGACGTTCTAGTGTATCAGCGGACCACGCCCATCTGTATAATGTGTAATATAATGGTGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR TCA 72 bp | ATTATATTACACATTATACAGATGGGCGTGGTCCGCTaGTACACTAGAACGTCATTTTGCACATATGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: IILHIIQMGVVR*YTRTSFCTYEG Trigger: TCCTTCATATGTGCAAAATGACGTTCTAGTGTATCAGCGGACCACGCCCATCTGTATAATGTGTAATATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS-3UTR TCA 90 bp | GGCAGGAAGACCTGGCTTGGTTCTCTGAGGGATGACTTCAGCTGGCAGGCTCCAAGTCAGGTTTGGGGCTaGAGGGCCCTGTGGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: GRKTWLGSLRDDFSWQAPSQVWG*RALWEG Trigger: ACCTTCCCACAGGGCCCTTCAGCCCCAAACCTGACT...TGGAGCCTGCCAGCTGAAGTCATCCCTCAGAGAACCAAGCCAGGTCTTCCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052286.16 ENSMUST00000183431.8 ENSMUST00000183725.2 |
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| CDS-3UTR TCA 90 bp | GGCAGGAAGACCTGGCTTGGTTCTCTGAGGGATGACTTCAGCTGGCAGGCTCCACCCTGTGGGAAGGTTTaGAGCCAGTTCCTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GRKTWLGSLRDDFSWQAPPCGKV*SQFLQQ Trigger: CTGCTGGAGGAACTGGCTTCAAACCTTCCCACAGGG...TGGAGCCTGCCAGCTGAAGTCATCCCTCAGAGAACCAAGCCAGGTCTTCCTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052286.16 ENSMUST00000183431.8 ENSMUST00000183725.2 |
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| CDS-3UTR CCA 90 bp | GGAATTAATGGTGATGACTCCTCAGGCACGCTGGAAGCCACAGAATTTGTGCAGGTCCGGGGGTGTCCCTaGGACCTTGGCCCCATTCGC | + |
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Preference number: 4 (lower is better) Translates to: GINGDDSSGTLEATEFVQVRGCP*DLGPIR Trigger: GCGAATGGGGCCAAGGTCCCAGGGACACCCCCGGAC...CTGCACAAATTCTGTGGCTTCCAGCGTGCCTGAGGAGTCATCACCATTAATTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS-3UTR TCA 90 bp | GAGCTGCGGCAACAGAGGTCATGGCTAGCAGATGGGTCCAAATCGGAGCTTTTAAGTCAGGTTTGGGGCTaGAGGGCCCTGTGGGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: ELRQQRSWLADGSKSELLSQVWG*RALWEG Trigger: ACCTTCCCACAGGGCCCTTCAGCCCCAAACCTGACT...TAAAAGCTCCGATTTGGACCCATCTGCTAGCCATGACCTCTGTTGCCGCAGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| 3UTR CAA 72 bp | TTTTTGACAGTCTCCTTGGTGGCAGTGGCTGCTGTTTaGTGGCCTGGGCAGCAAGGCGGCATAATGGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: FLTVSLVAVAAV*WPGQQGGIMGL Trigger: AAGGCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACTGTCAAAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS-3UTR TCA 90 bp | TCTGTGCTTGGTTACCACTCTAGGCCTCTGGTGTCTCACATCCTGTCAGTCAGTCCCTGTGGGAAGGTTTaGAGCCAGTTCCTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: SVLGYHSRPLVSHILSVSPCGKV*SQFLQQ Trigger: CTGCTGGAGGAACTGGCTTCAAACCTTCCCACAGGG...ACTGACTGACAGGATGTGAGACACCAGAGGCCTAGAGTGGTAACCAAGCACAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS-3UTR CAA 90 bp | TTGGTGGCAGTGGCTGCTGTTTTGTGGCCTGGGCAGCAAGGCGGCATAATGGGCGGTGTCCCTGGGACCTaGGCCCCATTCGCCCGTCCC | + |
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Preference number: 5 (lower is better) Translates to: LVAVAAVLWPGQQGGIMGGVPGT*APFARP Trigger: GGGACGGGCGAATGGGGCCAAGGTCCCAGGGACACC...GCCCATTATGCCGCCTTGCTGCCCAGGCCACAAAACAGCAGCCACTGCCACCAA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS-3UTR CAA 90 bp | GGCAGGAAGACCTGGCTTGGTTCTCTGAGGGATGACTTCAGCTGGCAGGCTCCACCAAGCAAGTCAGGTTaGGGGCTGAAGGGCCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: GRKTWLGSLRDDFSWQAPPSKSG*GLKGPV Trigger: CACAGGGCCCTTCAGCCCCAAACCTGACTTGCTTGG...TGGAGCCTGCCAGCTGAAGTCATCCCTCAGAGAACCAAGCCAGGTCTTCCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052286.16 ENSMUST00000183431.8 ENSMUST00000183725.2 |
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| CDS GCA 90 bp | TCCACTGTCTTCTCCACCGTCTCCTCCATAATGTCTAACCGCCTTTaGACAGCCGCGTGTCTGTCACAGCCTGGGCTCCCAGCTAGATCT | + |
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Preference number: 5 (lower is better) Translates to: STVFSTVSSIMSNRL*TAACLSQPGLPARS Trigger: AGATCTAGCTGGGAGCCCAGGCTGTGACAGACACGCGGCTGTGCAAAGGCGGTTAGACATTATGGAGGAGACGGTGGAGAAGACAGTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS-3UTR CAA 90 bp | TCTTGTGTTTTTGACAGTCTCCTTGGTGGCAGTGGCTGCTGTTTTGTGGCCTGGCCAAGCAAGTCAGGTTaGGGGCTGAAGGGCCCTGTG | + |
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Preference number: 5 (lower is better) Translates to: SCVFDSLLGGSGCCFVAWPSKSG*GLKGPV Trigger: CACAGGGCCCTTCAGCCCCAAACCTGACTTGCTTGG...CCAGGCCACAAAACAGCAGCCACTGCCACCAAGGAGACTGTCAAAAACACAAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS CAA 72 bp | CTCGGCAGCTCGCCGTCCGGGGGTGTCCCTGGGACCTaGGCCCCATTCGCCCGTCCCGGCACGGAGCAGGGC | + |
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Preference number: 6 (lower is better) Translates to: LGSSPSGGVPGT*APFARPGTEQG Trigger: GCCCTGCTCCGTGCCGGGACGGGCGAATGGGGCCAAGGTCCCAGGGACACCCCCGGACGGCGAGCTGCCGAG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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| CDS GCA 72 bp | TTCTCCACCGTCTCCTCCATAATGTCTAACCGCCTTTaGACAGCCGCGTGTCTGTCACAGCCTGGGCTCCCA | + |
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Preference number: 6 (lower is better) Translates to: FSTVSSIMSNRL*TAACLSQPGLP Trigger: TGGGAGCCCAGGCTGTGACAGACACGCGGCTGTGCAAAGGCGGTTAGACATTATGGAGGAGACGGTGGAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052286.16 |
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