Pregenerated sensors for PLAC8L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000059455

Ensembl transcript IDs: ENSMUST00000081374.4, ENSMUST00000236636.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCTCTGCAGACACTGAAGAGTCCGGTGCTCCAGTCCCCACCAGTCTaGACAATGGCTGCAACTGTGGTCCTACCAATGGCTCCACGGATC	+
Preference number: 5 (lower is better) Translates to: SLQTLKSPVLQSPPV*TMAATVVLPMAPRI Trigger: GATCCGTGGAGCCATTGGTAGGACCACAGTTGCAGCCATTGTTCAGACTGGTGGGGACTGGAGCACCGGACTCTTCAGTGTCTGCAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS GCA 90 bp	ACTGAAGAGTCCGGTGCTCCAGTCCCCACCAGTCTGAACAATGGCTaGAACTGTGGTCCTACCAATGGCTCCACGGATCGGCTGTTTCAC	+
Preference number: 5 (lower is better) Translates to: TEESGAPVPTSLNNG*NCGPTNGSTDRLFH Trigger: GTGAAACAGCCGATCCGTGGAGCCATTGGTAGGACCACAGTTGCAGCCATTGTTCAGACTGGTGGGGACTGGAGCACCGGACTCTTCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS CCA 90 bp	ATGGCTCCACGGATCGGCTGTTTCACCACGACACGAGCTGGCACATaGCTCCTCAAGTTCGAGATTAAATGCTCATCTTCAGAGGGCATG	+
Preference number: 5 (lower is better) Translates to: MAPRIGCFTTTRAGT*LLKFEIKCSSSEGM Trigger: CATGCCCTCTGAAGATGAGCATTTAATCTCGAACTTGAGGAGCCATGTGCCAGCTCGTGTCGTGGTGAAACAGCCGATCCGTGGAGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS TCA 90 bp	GCTCATCTTCAGAGGGCATGGGTGAGAAGAGTGGTAAGTGTGAACTaGGCACGGAAATGTCCTTGCACCATCTGGAGAAATGATGTCCCA	+
Preference number: 5 (lower is better) Translates to: AHLQRAWVRRVVSVN*ARKCPCTIWRNDVP Trigger: TGGGACATCATTTCTCCAGATGGTGCAAGGACATTTCCGTGCTCAGTTCACACTTACCACTCTTCTCACCCATGCCCTCTGAAGATGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS GCA 90 bp	ACCACGACACGAGCTGGCACATGGCTCCTCAAGTTCGAGATTAAATaGTCATCTTCAGAGGGCATGGGTGAGAAGAGTGGTAAGTGTGAA	+
Preference number: 5 (lower is better) Translates to: TTTRAGTWLLKFEIK*SSSEGMGEKSGKCE Trigger: TTCACACTTACCACTCTTCTCACCCATGCCCTCTGAAGATGAGCATTTAATCTCGAACTTGAGGAGCCATGTGCCAGCTCGTGTCGTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS TCA 90 bp	GTTCAGGGACTTCACAGATTTCGTAGAGTTGAGAAGTTCTCATCTTaGGTTCTCGGGCCACCTGACAGATGGAGAAAGGCCAGCAGCAAT	+
Preference number: 5 (lower is better) Translates to: VQGLHRFRRVEKFSS*VLGPPDRWRKASSN Trigger: ATTGCTGCTGGCCTTTCTCCATCTGTCAGGTGGCCCGAGAACTCAAGATGAGAACTTCTCAACTCTACGAAATCTGTGAAGTCCCTGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081374.4
CDS GCA 72 bp	TCCGGTGCTCCAGTCCCCACCAGTCTGAACAATGGCTaGAACTGTGGTCCTACCAATGGCTCCACGGATCGG	+
Preference number: 6 (lower is better) Translates to: SGAPVPTSLNNG*NCGPTNGSTDR Trigger: CCGATCCGTGGAGCCATTGGTAGGACCACAGTTGCAGCCATTGTTCAGACTGGTGGGGACTGGAGCACCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS TCA 72 bp	ACACTGAAGAGTCCGGTGCTCCAGTCCCCACCAGTCTaGACAATGGCTGCAACTGTGGTCCTACCAATGGCT	+
Preference number: 6 (lower is better) Translates to: TLKSPVLQSPPV*TMAATVVLPMA Trigger: AGCCATTGGTAGGACCACAGTTGCAGCCATTGTTCAGACTGGTGGGGACTGGAGCACCGGACTCTTCAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS CCA 72 bp	CAGTCTGAACAATGGCTGCAACTGTGGTCCTACCAATaGCTCCACGGATCGGCTGTTTCACCACGACACGAG	+
Preference number: 6 (lower is better) Translates to: QSEQWLQLWSYQ*LHGSAVSPRHE Trigger: CTCGTGTCGTGGTGAAACAGCCGATCCGTGGAGCCATTGGTAGGACCACAGTTGCAGCCATTGTTCAGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS CCA 72 bp	TCCAGTCCCCACCAGTCTGAACAATGGCTGCAACTGTaGTCCTACCAATGGCTCCACGGATCGGCTGTTTCA	+
Preference number: 6 (lower is better) Translates to: SSPHQSEQWLQL*SYQWLHGSAVS Trigger: TGAAACAGCCGATCCGTGGAGCCATTGGTAGGACCACAGTTGCAGCCATTGTTCAGACTGGTGGGGACTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS GCA 72 bp	CGAGCTGGCACATGGCTCCTCAAGTTCGAGATTAAATaGTCATCTTCAGAGGGCATGGGTGAGAAGAGTGGT	+
Preference number: 6 (lower is better) Translates to: RAGTWLLKFEIK*SSSEGMGEKSG Trigger: ACCACTCTTCTCACCCATGCCCTCTGAAGATGAGCATTTAATCTCGAACTTGAGGAGCCATGTGCCAGCTCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS TCA 72 bp	CAGAGGGCATGGGTGAGAAGAGTGGTAAGTGTGAACTaGGCACGGAAATGTCCTTGCACCATCTGGAGAAAT	+
Preference number: 6 (lower is better) Translates to: QRAWVRRVVSVN*ARKCPCTIWRN Trigger: ATTTCTCCAGATGGTGCAAGGACATTTCCGTGCTCAGTTCACACTTACCACTCTTCTCACCCATGCCCTCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081374.4 ENSMUST00000236636.2
CDS TCA 72 bp	CTTCACAGATTTCGTAGAGTTGAGAAGTTCTCATCTTaGGTTCTCGGGCCACCTGACAGATGGAGAAAGGCC	+
Preference number: 6 (lower is better) Translates to: LHRFRRVEKFSS*VLGPPDRWRKA Trigger: GGCCTTTCTCCATCTGTCAGGTGGCCCGAGAACTCAAGATGAGAACTTCTCAACTCTACGAAATCTGTGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081374.4
CDS CCA 72 bp	GTAACAGTGGCCAACAAAGACACTCTCCGTAATGCCTaGCAATGTCACACTCAAGACACATGGGACAAAGCA	+
Preference number: 6 (lower is better) Translates to: VTVANKDTLRNA*QCHTQDTWDKA Trigger: TGCTTTGTCCCATGTGTCTTGAGTGTGACATTGCCAGGCATTACGGAGAGTGTCTTTGTTGGCCACTGTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000081374.4