Pregenerated sensors for PLAC8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029322Ensembl transcript IDs: ENSMUST00000031264.12, ENSMUST00000097437.9, ENSMUST00000112910.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATCAAAAAGCCCAACTAGAAAGATTTCACCGTTCTCTAATTAAATaGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGG | + |
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Preference number: 1 (lower is better) Translates to: NQKAQLERFHRSLIK*IHPISVAKDLKNLR Trigger: CCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTTAATTAGAGAACGGTGAAATCTTTCTAGTTGGGCTTTTTGATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| 3UTR-3UTR TCA 90 bp | AAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTaGGCTTCTTCAGCCAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: KWIHPISVAKDLKNLRLKECVLS*ASSARA Trigger: AGCTCTGGCTGAAGAAGCTCAACTCAGCACACACTC...CTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| 3UTR TCA 72 bp | TTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTaGGCTTCTTCAGCCAGAGCTCTTGCCATCCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: LKNLRLKECVLS*ASSARALAIQL Trigger: GAGCTGGATGGCAAGAGCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| 3UTR-3UTR CAA 90 bp | AGGCTCCAATATTTGATGATATGGGAGCAAGAAGAAACCAAGTCAAAGAGCAATGGAGTGTGTGCTGAGTaGAGCTTCTTCAGCCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: RLQYLMIWEQEETKSKSNGVCAE*SFFSQS Trigger: GCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCC...ATTGCTCTTTGACTTGGTTTCTTCTTGCTCCCATATCATCAAATATTGGAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCCAATATTTGATGATATGGGAGCAAGAAGAAACCAAGTCAAAGAGCAATATGGAGTGTGTGCTGAGTaGAGCTTCTTCAGCCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: APIFDDMGARRNQVKEQYGVCAE*SFFSQS Trigger: GCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCC...ATATTGCTCTTTGACTTGGTTTCTTCTTGCTCCCATATCATCAAATATTGGAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCCAATATTTGATGATATGGGAGCAAGAAGAAACCAAGTCAAAGAGCAATATTCAGTTGCCAAAGATTaGAAAAATCTCAGGCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: APIFDDMGARRNQVKEQYSVAKD*KNLRLK Trigger: CTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGA...ATATTGCTCTTTGACTTGGTTTCTTCTTGCTCCCATATCATCAAATATTGGAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | TTTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCTTCTTCAGCCAGAGACTCCGCAGTCACTaGAGCAATCACACAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: FEKSQAEGVCAELSFFSQRLRSH*SNHTGW Trigger: CCAGCCTGTGTGATTGCTTCAGTGACTGCGGAGTCT...CTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR GCA 90 bp | AAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCTTCTTCAGCCAGAGCTCTTCACACAGGCTGGTCTaGCAGTTGGAATTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: KSQAEGVCAELSFFSQSSSHRLV*QLEFWG Trigger: TCCCCAAAATTCCAACTGGCAGACCAGCCTGTGTGA...AGAGCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | GATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGAGACTCCGCAGTCACTaGAGCAATCACACAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: DPSHLSCQRFEKSQAEGVRLRSH*SNHTGW Trigger: CCAGCCTGTGTGATTGCTTCAGTGACTGCGGAGTCT...CACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | AAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCTTCTTCAGCCAGAGCTCTCAGGACAGAAGAGTGTaGCCATGTAGTCATCACAAA | + |
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Preference number: 4 (lower is better) Translates to: KSQAEGVCAELSFFSQSSQDRRV*PCSHHK Trigger: TTTGTGATGACTACATGGTCACACTCTTCTGTCCTG...AGAGCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CCA 90 bp | CATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGGGCTGGTCTGCCAGTTaGAATTTTGGGGAGCACGAA | + |
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Preference number: 4 (lower is better) Translates to: HPISVAKDLKNLRLKECVGWSAS*NFGEHE Trigger: TTCGTGCTCCCCAAAATTCCAACTGGCAGACCAGCC...CACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CCA 90 bp | AAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCTTCTTCAGCCAGAGCTCTATGTCTCTCTTGAGTTaGCACACAGAGCAAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: KSQAEGVCAELSFFSQSSMSLLS*HTEQTG Trigger: TCCTGTTTGCTCTGTGTGCCAACTCAAGAGAGACAT...AGAGCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | AAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGAGACTCCGCAGTCACTaGAGCAATCACACAGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KWIHPISVAKDLKNLRLKRLRSH*SNHTGW Trigger: CCAGCCTGTGTGATTGCTTCAGTGACTGCGGAGTCT...CTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR GCA 90 bp | CATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGTCACACAGGCTGGTCTaGCAGTTGGAATTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: HPISVAKDLKNLRLKECVSHRLV*QLEFWG Trigger: TCCCCAAAATTCCAACTGGCAGACCAGCCTGTGTGA...CACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | TTTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCTTCTTCAGCCAGATGTCAGCTGCCACTTaGCATCCAAGACAAGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: FEKSQAEGVCAELSFFSQMSAAT*HPRQVK Trigger: TTTCACTTGTCTTGGATGTCAAGTGGCAGCTGACAT...CTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR GCA 90 bp | AGGCTCCAATATTTGATGATATGGGAGCAAGAAGAAACCAAGTCAAAGAGCAATTCACACAGGCTGGTCTaGCAGTTGGAATTTTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: RLQYLMIWEQEETKSKSNSHRLV*QLEFWG Trigger: TCCCCAAAATTCCAACTGGCAGACCAGCCTGTGTGA...ATTGCTCTTTGACTTGGTTTCTTCTTGCTCCCATATCATCAAATATTGGAGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR GCA 90 bp | ATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGACTCATTCATGTCAGCTaGCACTTGACATCCAAGACA | + |
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Preference number: 4 (lower is better) Translates to: MDPSHLSCQRFEKSQAEGLIHVS*HLTSKT Trigger: TGTCTTGGATGTCAAGTGGCAGCTGACATGAATGAG...TCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CCA 90 bp | CTAATTAAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGGGCTGGTCTGCCAGTTaGAATTTTGGGGAGCACGAA | + |
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Preference number: 4 (lower is better) Translates to: LIKWIHPISVAKDLKNLRGWSAS*NFGEHE Trigger: TTCGTGCTCCCCAAAATTCCAACTGGCAGACCAGCC...CCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTTAATTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | AAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGATGTCAGCTGCCACTTaGCATCCAAGACAAGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: KWIHPISVAKDLKNLRLKMSAAT*HPRQVK Trigger: TTTCACTTGTCTTGGATGTCAAGTGGCAGCTGACAT...CTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CCA 90 bp | TCTCTAATTAAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCGGCTGGTCTGCCAGTTaGAATTTTGGGGAGCACGAA | + |
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Preference number: 4 (lower is better) Translates to: SLIKWIHPISVAKDLKNLGWSAS*NFGEHE Trigger: TTCGTGCTCCCCAAAATTCCAACTGGCAGACCAGCC...GAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTTAATTAGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| 3UTR CAA 72 bp | ATTAAATGGATCCATCCCATCTCAGTTGCCAAAGATTaGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: IKWIHPISVAKD*KNLRLKECVLS Trigger: ACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTTAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CCA 90 bp | AGGCTCCAATATTTGATGATATGGGAGCAAGAAGAAACCAAGTCAAAGAGCAATATGTCTCTCTTGAGTTaGCACACAGAGCAAACAGGA | + |
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Preference number: 4 (lower is better) Translates to: RLQYLMIWEQEETKSKSNMSLLS*HTEQTG Trigger: TCCTGTTTGCTCTGTGTGCCAACTCAAGAGAGACAT...ATTGCTCTTTGACTTGGTTTCTTCTTGCTCCCATATCATCAAATATTGGAGCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR TCA 90 bp | CTAATTAAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCAGGACAGAAGAGTGTaGCCATGTAGTCATCACAAA | + |
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Preference number: 4 (lower is better) Translates to: LIKWIHPISVAKDLKNLRQDRRV*PCSHHK Trigger: TTTGTGATGACTACATGGTCACACTCTTCTGTCCTG...CCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTTAATTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR GCA 90 bp | CTAATTAAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTCATTCATGTCAGCTaGCACTTGACATCCAAGACA | + |
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Preference number: 4 (lower is better) Translates to: LIKWIHPISVAKDLKNLRLIHVS*HLTSKT Trigger: TGTCTTGGATGTCAAGTGGCAGCTGACATGAATGAG...CCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTTAATTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | AAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCTTCTTCAGCCAGAGCTCTCATGTCAGCTGCCACTaGACATCCAAGACAAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: KSQAEGVCAELSFFSQSSHVSCH*TSKTSE Trigger: TTCACTTGTCTTGGATGTCAAGTGGCAGCTGACATG...AGAGCTCTGGCTGAAGAAGCTCAACTCAGCACACACTCCTTCAGCCTGAGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | TGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGCTGCCAGTTGGAATTTaGGGGAGCACGAACGAATCC | + |
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Preference number: 5 (lower is better) Translates to: WIHPISVAKDLKNLRLKELPVGI*GSTNES Trigger: GGATTCGTTCGTGCTCCCCAAAATTCCAACTGGCAG...CTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | AGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCCTGCCAGTTGGAATTTaGGGGAGCACGAACGAATCC | + |
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Preference number: 5 (lower is better) Translates to: SCQRFEKSQAEGVCAELSLPVGI*GSTNES Trigger: GGATTCGTTCGTGCTCCCCAAAATTCCAACTGGCAG...GCTCAACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | CATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGTCCTCATGGCCACCGTaGTTCCACACAGACAACACT | + |
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Preference number: 5 (lower is better) Translates to: HPISVAKDLKNLRLKECVSSWPP*FHTDNT Trigger: AGTGTTGTCTGTGTGGAACAACGGTGGCCATGAGGA...CACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | AGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCCATGTCAGCTGCCACTaGACATCCAAGACAAGTGAA | + |
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Preference number: 5 (lower is better) Translates to: SCQRFEKSQAEGVCAELSHVSCH*TSKTSE Trigger: TTCACTTGTCTTGGATGTCAAGTGGCAGCTGACATG...GCTCAACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | AAATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGTCCTCATGGCCACCGTaGTTCCACACAGACAACACT | + |
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Preference number: 5 (lower is better) Translates to: KWIHPISVAKDLKNLRLKSSWPP*FHTDNT Trigger: AGTGTTGTCTGTGTGGAACAACGGTGGCCATGAGGA...CTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | AGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAGTGTGTGCTGAGTTGAGCAATGTCTCTCTTGAGTaGGCACACAGAGCAAACAGG | + |
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Preference number: 5 (lower is better) Translates to: SCQRFEKSQAEGVCAELSNVSLE*AHRANR Trigger: CCTGTTTGCTCTGTGTGCCAACTCAAGAGAGACATT...GCTCAACTCAGCACACACTCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | AGGCTCCAATATTTGATGATATGGGAGCAAGAAGAAACCAAGTCAAAGAGCAATCTGCCAGTTGGAATTTaGGGGAGCACGAACGAATCC | + |
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Preference number: 5 (lower is better) Translates to: RLQYLMIWEQEETKSKSNLPVGI*GSTNES Trigger: GGATTCGTTCGTGCTCCCCAAAATTCCAACTGGCAG...ATTGCTCTTTGACTTGGTTTCTTCTTGCTCCCATATCATCAAATATTGGAGCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS-3UTR CAA 90 bp | ATGGATCCATCCCATCTCAGTTGCCAAAGATTTGAAAAATCTCAGGCTGAAGGAAATGTCTCTCTTGAGTaGGCACACAGAGCAAACAGG | + |
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Preference number: 5 (lower is better) Translates to: MDPSHLSCQRFEKSQAEGNVSLE*AHRANR Trigger: CCTGTTTGCTCTGTGTGCCAACTCAAGAGAGACATT...TCCTTCAGCCTGAGATTTTTCAAATCTTTGGCAACTGAGATGGGATGGATCCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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| CDS TCA 72 bp | CATTCATGTCAGCTGCCACTTGACATCCAAGACAAGTaGAACAAAAGGTCCCACAGAGGCAGACTCCGCAGT | + |
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Preference number: 6 (lower is better) Translates to: HSCQLPLDIQDK*NKRSHRGRLRS Trigger: ACTGCGGAGTCTGCCTCTGTGGGACCTTTTGTTTCACTTGTCTTGGATGTCAAGTGGCAGCTGACATGAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031264.12 ENSMUST00000097437.9 ENSMUST00000112910.2 |
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