Pregenerated sensors for PLAC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061082

Ensembl transcript IDs: ENSMUST00000074861.9, ENSMUST00000114843.9, ENSMUST00000174390.2

Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	AACACACTAGTCCCCAGAAACATTTGCACAGTCAGATaGCTACACAAGAAGGACCTCCAAAGACTCTGTCCC	+
Preference number: 3 (lower is better) Translates to: NTLVPRNICTVR*LHKKDLQRLCP Trigger: GGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAAATGTTTCTGGGGACTAGTGTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR GCA 90 bp	AGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCCATGATGGAGGGCATGTTGTTGCTAGGTaGTTTCGCGGAGTAGGGCTT	+
Preference number: 4 (lower is better) Translates to: SQMTTQEGPPKTLSHDGGHVVAR*FRGVGL Trigger: AAGCCCTACTCCGCGAAAGCACCTAGCAACAACATG...CCCTCCATCATGGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR TCA 90 bp	TTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCCATGATTTCAGCAAGAAGGGGTaGACGGTGACCATGAACCAA	+
Preference number: 4 (lower is better) Translates to: LHSQMTTQEGPPKTLSHDFSKKG*TVTMNQ Trigger: TTGGTTCATGGTCACCGTTCACCCCTTCTTGCTGAA...ATCATGGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR TCA 90 bp	GGCACTATATGGGTTTCCTCAGATCATCTGAGTGAACACACTAGTCCCCAGAAATTCAGCAAGAAGGGGTaGACGGTGACCATGAACCAA	+
Preference number: 4 (lower is better) Translates to: GTIWVSSDHLSEHTSPQKFSKKG*TVTMNQ Trigger: TTGGTTCATGGTCACCGTTCACCCCTTCTTGCTGAA...TTTCTGGGGACTAGTGTGTTCACTCAGATGATCTGAGGAAACCCATATAGTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR TCA 90 bp	CTGAGTGAACACACTAGTCCCCAGAAACATTTGCACAGTCAGATGACTACACAATTCAGCAAGAAGGGGTaGACGGTGACCATGAACCAA	+
Preference number: 4 (lower is better) Translates to: LSEHTSPQKHLHSQMTTQFSKKG*TVTMNQ Trigger: TTGGTTCATGGTCACCGTTCACCCCTTCTTGCTGAA...TTGTGTAGTCATCTGACTGTGCAAATGTTTCTGGGGACTAGTGTGTTCACTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR GCA 90 bp	CATCTGAGTGAACACACTAGTCCCCAGAAACATTTGCACAGTCAGATGACTACACATGTTGTTGCTAGGTaGTTTCGCGGAGTAGGGCTT	+
Preference number: 4 (lower is better) Translates to: HLSEHTSPQKHLHSQMTTHVVAR*FRGVGL Trigger: AAGCCCTACTCCGCGAAAGCACCTAGCAACAACATG...TGTAGTCATCTGACTGTGCAAATGTTTCTGGGGACTAGTGTGTTCACTCAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	TTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCCATGATATAGATGACGACATCTaGAGAGACAGCCTTGATGCG	+
Preference number: 4 (lower is better) Translates to: LHSQMTTQEGPPKTLSHDIDDDI*RDSLDA Trigger: CGCATCAAGGCTGTCTCTCCAGATGTCGTCATCTAT...ATCATGGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR GCA 90 bp	ATATGGGTTTCCTCAGATCATCTGAGTGAACACACTAGTCCCCAGAAACATTTGCATGTTGTTGCTAGGTaGTTTCGCGGAGTAGGGCTT	+
Preference number: 4 (lower is better) Translates to: IWVSSDHLSEHTSPQKHLHVVAR*FRGVGL Trigger: AAGCCCTACTCCGCGAAAGCACCTAGCAACAACATG...CAAATGTTTCTGGGGACTAGTGTGTTCACTCAGATGATCTGAGGAAACCCATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	AAACATTTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCATAGATGACGACATCTaGAGAGACAGCCTTGATGCG	+
Preference number: 4 (lower is better) Translates to: KHLHSQMTTQEGPPKTLSIDDDI*RDSLDA Trigger: CGCATCAAGGCTGTCTCTCCAGATGTCGTCATCTAT...GGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAAATGTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	ACATTTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCCAAAACTGGTAGAAATGTaGGTGAACATGATTGGGAGG	+
Preference number: 4 (lower is better) Translates to: TFAQSDDYTRRTSKDSVPKLVEM*VNMIGR Trigger: CCTCCCAATCATGTTCACCCACATTTCTACCAGTTT...TGGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	TTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCCATGATAAACTGGTAGAAATGTaGGTGAACATGATTGGGAGG	+
Preference number: 4 (lower is better) Translates to: LHSQMTTQEGPPKTLSHDKLVEM*VNMIGR Trigger: CCTCCCAATCATGTTCACCCACATTTCTACCAGTTT...ATCATGGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	AGTGAACACACTAGTCCCCAGAAACATTTGCACAGTCAGATGACTACACAAGAAATAGATGACGACATCTaGAGAGACAGCCTTGATGCG	+
Preference number: 4 (lower is better) Translates to: SEHTSPQKHLHSQMTTQEIDDDI*RDSLDA Trigger: CGCATCAAGGCTGTCTCTCCAGATGTCGTCATCTAT...TTCTTGTGTAGTCATCTGACTGTGCAAATGTTTCTGGGGACTAGTGTGTTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	GAAACATTTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCTCGTTGATGAGCCCTTaGAAGCATAGTGAATCTCAG	+
Preference number: 4 (lower is better) Translates to: ETFAQSDDYTRRTSKDSVSLMSP*KHSESQ Trigger: CTGAGATTCACTATGCTTCCAAGGGCTCATCAACGA...GACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAAATGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	ATATGGGTTTCCTCAGATCATCTGAGTGAACACACTAGTCCCCAGAAACATTTGTCGTTGATGAGCCCTTaGAAGCATAGTGAATCTCAG	+
Preference number: 4 (lower is better) Translates to: IWVSSDHLSEHTSPQKHLSLMSP*KHSESQ Trigger: CTGAGATTCACTATGCTTCCAAGGGCTCATCAACGA...CAAATGTTTCTGGGGACTAGTGTGTTCACTCAGATGATCTGAGGAAACCCATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CCA 90 bp	ACTATATGGGTTTCCTCAGATCATCTGAGTGAACACACTAGTCCCCAGAAACATTCGTTGATGAGCCCTTaGAAGCATAGTGAATCTCAG	+
Preference number: 4 (lower is better) Translates to: TIWVSSDHLSEHTSPQKHSLMSP*KHSESQ Trigger: CTGAGATTCACTATGCTTCCAAGGGCTCATCAACGA...ATGTTTCTGGGGACTAGTGTGTTCACTCAGATGATCTGAGGAAACCCATATAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS CCA 90 bp	GCCCTTGGAAGCATAGTGAATCTCAGAGCTATAGATGACGACATCTaGAGAGACAGCCTTGATGCGGATGCCACATTCGGTAACGCGGTA	+
Preference number: 5 (lower is better) Translates to: ALGSIVNLRAIDDDI*RDSLDADATFGNAV Trigger: TACCGCGTTACCGAATGTGGCATCCGCATCAAGGCTGTCTCTCCAGATGTCGTCATCTATAGCTCTGAGATTCACTATGCTTCCAAGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CAA 90 bp	CACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCCATGATGGAGAATCACATATTTCGTaGATGAGCCCTTGGAAGCAT	+
Preference number: 5 (lower is better) Translates to: HSQMTTQEGPPKTLSHDGESHIS*MSPWKH Trigger: ATGCTTCCAAGGGCTCATCAACGAAATATGTGATTC...TCCATCATGGGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CAA 90 bp	AAACATTTGCACAGTCAGATGACTACACAAGAAGGACCTCCAAAGACTCTGTCCGAATCACATATTTCGTaGATGAGCCCTTGGAAGCAT	+
Preference number: 5 (lower is better) Translates to: KHLHSQMTTQEGPPKTLSESHIS*MSPWKH Trigger: ATGCTTCCAAGGGCTCATCAACGAAATATGTGATTC...GGACAGAGTCTTTGGAGGTCCTTCTTGTGTAGTCATCTGACTGTGCAAATGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS-3UTR CAA 90 bp	ATATGGGTTTCCTCAGATCATCTGAGTGAACACACTAGTCCCCAGAAACATTTGGAATCACATATTTCGTaGATGAGCCCTTGGAAGCAT	+
Preference number: 5 (lower is better) Translates to: IWVSSDHLSEHTSPQKHLESHIS*MSPWKH Trigger: ATGCTTCCAAGGGCTCATCAACGAAATATGTGATTC...CAAATGTTTCTGGGGACTAGTGTGTTCACTCAGATGATCTGAGGAAACCCATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS CCA 72 bp	GGTAGTGAAACTGGTAGAAATGTGGGTGAACATGATTaGGAGGGCAACCAAGGCCCAGGTGCACCTCGTAAA	+
Preference number: 6 (lower is better) Translates to: GSETGRNVGEHD*EGNQGPGAPRK Trigger: TTTACGAGGTGCACCTGGGCCTTGGTTGCCCTCCCAATCATGTTCACCCACATTTCTACCAGTTTCACTACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS CCA 72 bp	ACATTCGGTAACGCGGTAGTGAAACTGGTAGAAATGTaGGTGAACATGATTGGGAGGGCAACCAAGGCCCAG	+
Preference number: 6 (lower is better) Translates to: TFGNAVVKLVEM*VNMIGRATKAQ Trigger: CTGGGCCTTGGTTGCCCTCCCAATCATGTTCACCCACATTTCTACCAGTTTCACTACCGCGTTACCGAATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS CAA 72 bp	GAGGGGCAGCACAGGACACGGGAATCACATATTTCGTaGATGAGCCCTTGGAAGCATAGTGAATCTCAGAGC	+
Preference number: 6 (lower is better) Translates to: EGQHRTRESHIS*MSPWKHSESQS Trigger: GCTCTGAGATTCACTATGCTTCCAAGGGCTCATCAACGAAATATGTGATTCCCGTGTCCTGTGCTGCCCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS CAA 72 bp	GACCATGAACCAATCTGTCGAGCACAGCACATTCACTaGGTTTTGCTCCGAGTAGCTGAAGAGCATGAAGGC	+
Preference number: 6 (lower is better) Translates to: DHEPICRAQHIH*VLLRVAEEHEG Trigger: GCCTTCATGCTCTTCAGCTACTCGGAGCAAAACCAAGTGAATGTGCTGTGCTCGACAGATTGGTTCATGGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2
CDS CCA 72 bp	AGCATAGTGAATCTCAGAGCTATAGATGACGACATCTaGAGAGACAGCCTTGATGCGGATGCCACATTCGGT	+
Preference number: 6 (lower is better) Translates to: SIVNLRAIDDDI*RDSLDADATFG Trigger: ACCGAATGTGGCATCCGCATCAAGGCTGTCTCTCCAGATGTCGTCATCTATAGCTCTGAGATTCACTATGCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074861.9 ENSMUST00000114843.9 ENSMUST00000174390.2