RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLAAT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022525

Ensembl transcript IDs: ENSMUST00000089824.11, ENSMUST00000161294.2, ENSMUST00000162747.8

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGGTGTAATTCTGCCAGAGACAAATGCCCTGCAAATATAGTTTATTaGGAAGGTGGCACACCAGGGGAAAGTAGCCCAGAGGCTGCAGCT +
Preference number: 1 (lower is better)
Translates to: RCNSARDKCPANIVY*EGGTPGESSPEAAA
Trigger: AGCTGCAGCCTCTGGGCTACTTTCCCCTGGTGTGCCACCTTCTCAATAAACTATATTTGCAGGGCATTTGTCTCTGGCAGAATTACACCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 90 bp TGCTCCACCCACACAGGTGCAGCAATATGGGGGTACCACCTCAAATaGTTTGTCATGCAGAGATCCTTAAGTACTTGGATATATCATGGA +
Preference number: 1 (lower is better)
Translates to: CSTHTGAAIWGYHLK*FVMQRSLSTWIYHG
Trigger: TCCATGATATATCCAAGTACTTAAGGATCTCTGCATGACAAAGCATTTGAGGTGGTACCCCCATATTGCTGCACCTGTGTGGGTGGAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 90 bp GACCGTCCCTATACATGCACACCATTCATAAGAATTCCATACATATaGACACACAAAAGTCCCCCACTCCTTCTTACATGCTCCACCCAC +
Preference number: 1 (lower is better)
Translates to: DRPYTCTPFIRIPYI*THKSPPLLLTCSTH
Trigger: GTGGGTGGAGCATGTAAGAAGGAGTGGGGGACTTTTGTGTGTGCATATGTATGGAATTCTTATGAATGGTGTGCATGTATAGGGACGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 90 bp TGGCAGCACATAGTTCTGTTCACATTACTGTTACCCTCATCAGTGTaGGTGTTTCCAGCACCAAGGTCAAATCAGTTAAGTAGGTCTGAG +
Preference number: 1 (lower is better)
Translates to: WQHIVLFTLLLPSSV*VFPAPRSNQLSRSE
Trigger: CTCAGACCTACTTAACTGATTTGACCTTGGTGCTGGAAACACTCACACTGATGAGGGTAACAGTAATGTGAACAGAACTATGTGCTGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 90 bp ACTATTTGGGAACAGAGACCTGCATTCAGGATAAAAGTAACCTCGTaGCTTCTGAGACAACTAAAGAATGAGTCTGGAGGTTCGGACAAG +
Preference number: 1 (lower is better)
Translates to: TIWEQRPAFRIKVTS*LLRQLKNESGGSDK
Trigger: CTTGTCCGAACCTCCAGACTCATTCTTTAGTTGTCTCAGAAGGCACGAGGTTACTTTTATCCTGAATGCAGGTCTCTGTTCCCAAATAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 90 bp ACGTACAAGGGAGAGAGAGAGAGAAAGAAAGAGAGAGAGAGAGATTaGAGAGGGGCTCAGTGGGTAAAGCATCTTAAACATAAGCATGAT +
Preference number: 1 (lower is better)
Translates to: TYKGERERKKERERD*RGAQWVKHLKHKHD
Trigger: ATCATGCTTATGTTTAAGATGCTTTACCCACTGAGCCCCTCTCCAATCTCTCTCTCTCTCTTTCTTTCTCTCTCTCTCTCCCTTGTACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 90 bp GCTTGCCAAGCCCCAAAGGTCAAACCACTGAGCTACTACACAATGTaGAGGGATCCATTTAAATCAATAAAACGACAGCCCATTGTTCAT +
Preference number: 1 (lower is better)
Translates to: ACQAPKVKPLSYYTM*RDPFKSIKRQPIVH
Trigger: ATGAACAATGGGCTGTCGTTTTATTGATTTAAATGGATCCCTCCACATTGTGTAGTAGCTCAGTGGTTTGACCTTTGGGGCTTGGCAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 90 bp AGGGATCCATTTAAATCAATAAAACGACAGCCCATTGTTCATCACTaGGTCTTGAACACTGGGTCTGAACGTACAAGGGAGAGAGAGAGA +
Preference number: 1 (lower is better)
Translates to: RDPFKSIKRQPIVHH*VLNTGSERTRERER
Trigger: TCTCTCTCTCTCCCTTGTACGTTCAGACCCAGTGTTCAAGACTCAGTGATGAACAATGGGCTGTCGTTTTATTGATTTAAATGGATCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 90 bp ATTCAGGATAAAAGTAACCTCGTGCCTTCTGAGACAACTAAAGAATaGGTCTGGAGGTTCGGACAAGAAGGGCCTGTTAGAAAAGTAAAG +
Preference number: 1 (lower is better)
Translates to: IQDKSNLVPSETTKE*VWRFGQEGPVRKVK
Trigger: CTTTACTTTTCTAACAGGCCCTTCTTGTCCGAACCTCCAGACTCATTCTTTAGTTGTCTCAGAAGGCACGAGGTTACTTTTATCCTGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 90 bp AGAAAGACTAACGTCCCACCTCTCCTGACCTGCTATCAAGAATTCTaGAGAAATGGCATTAAGAAGGAGTTTAATTCAACGGATAATCAG +
Preference number: 1 (lower is better)
Translates to: RKTNVPPLLTCYQEF*RNGIKKEFNSTDNQ
Trigger: CTGATTATCCGTTGAATTAAACTCCTTCTTAATGCCATTTCTGCAGAATTCTTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 90 bp AGAGGCTGCAGCTGCCCTTACCTTAATAGGAAACTTCTAGAAAACTaGATATTCTTTACTATTTGGGAACAGAGACCTGCATTCAGGATA +
Preference number: 1 (lower is better)
Translates to: RGCSCPYLNRKLLEN*IFFTIWEQRPAFRI
Trigger: TATCCTGAATGCAGGTCTCTGTTCCCAAATAGTAAAGAATATTCAGTTTTCTAGAAGTTTCCTATTAAGGTAAGGGCAGCTGCAGCCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 90 bp ATACTACCTTCATGTAGAAAGACTAACGTCCCACCTCTCCTGACCTaGTATCAAGAATTCTGCAGAAATGGCATTAAGAAGGAGTTTAAT +
Preference number: 1 (lower is better)
Translates to: ILPSCRKTNVPPLLT*YQEFCRNGIKKEFN
Trigger: ATTAAACTCCTTCTTAATGCCATTTCTGCAGAATTCTTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGAAGGTAGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp CCCAGAGTCCACAGAAAGCTTGGGTTGTTAGTTCACTTCGGTAACTCCAGAACTCCACTCCTTCTTACATaGTCCACCCACACAGGTGCA +
Preference number: 2 (lower is better)
Translates to: PRVHRKLGLLVHFGNSRTPLLLT*STHTGA
Trigger: TGCACCTGTGTGGGTGGAGCATGTAAGAAGGAGTGG...AGTTCTGGAGTTACCGAAGTGAACTAACAACCCAAGCTTTCTGTGGACTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CCA 90 bp GAAGGGCCTGTTAGAAAAGTAAAGAAGGGACAGAGGGGACTCTGTCTGGATGGGTGGAGAGGGGCTCAGTaGGTAAAGCATCTTAAACAT +
Preference number: 2 (lower is better)
Translates to: EGPVRKVKKGQRGLCLDGWRGAQ*VKHLKH
Trigger: ATGTTTAAGATGCTTTACCCACTGAGCCCCTCTCCA...CCCATCCAGACAGAGTCCCCTCTGTCCCTTCTTTACTTTTCTAACAGGCCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp GACTCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCCACCTCTCCTGACCTaGTATCAAGAATTCTGCAGA +
Preference number: 2 (lower is better)
Translates to: DSVWMGVAAHSSVHITVTPPLLT*YQEFCR
Trigger: TCTGCAGAATTCTTGATAGCAGGTCAGGAGAGGTGG...GGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CAA 90 bp AGAGGGGCTCAGTGGGTAAAGCATCTTAAACATAAGCATGATGTCTaGAGCTCAGATCCCCAGAGTCCACAGAAAGCTTGGGTTGTTAGT +
Preference number: 2 (lower is better)
Translates to: RGAQWVKHLKHKHDV*SSDPQSPQKAWVVS
Trigger: ACTAACAACCCAAGCTTTCTGTGGACTCTGGGGATCTGAGCTCAAGACATCATGCTTATGTTTAAGATGCTTTACCCACTGAGCCCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CCA 90 bp ATACTACCTTCATGTAGAAAGACTAACGTCCCACCTCTCCTGACCTGCTATCAAACAGGTGCAGCAATATaGGGGTACCACCTCAAATGC +
Preference number: 2 (lower is better)
Translates to: ILPSCRKTNVPPLLTCYQTGAAI*GYHLKC
Trigger: GCATTTGAGGTGGTACCCCCATATTGCTGCACCTGT...TTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGAAGGTAGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CCA 90 bp TCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCTCAGTCCACAGAAAGCTTaGGTTGTTAGTTCACTTCGG +
Preference number: 2 (lower is better)
Translates to: SVWMGVAAHSSVHITVTLSPQKA*VVSSLR
Trigger: CCGAAGTGAACTAACAACCCAAGCTTTCTGTGGACT...GAGGGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CCA 90 bp AGAAGGGACAGAGGGGACTCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTAGCTACTACACAATGTaGAGGGATCCATTTAAATCA +
Preference number: 2 (lower is better)
Translates to: RRDRGDSVWMGVAAHSSVSYYTM*RDPFKS
Trigger: TGATTTAAATGGATCCCTCCACATTGTGTAGTAGCT...AACAGAACTATGTGCTGCCACTCCCATCCAGACAGAGTCCCCTCTGTCCCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CAA 90 bp ATCCCCATGGTCACTGGCACTCTTTCCTTATTGATTGACATGCTTTaGATAATGGCACAAAAGGATGCCGGGCTAGCTGTGTGGTTTATG +
Preference number: 2 (lower is better)
Translates to: IPMVTGTLSLLIDML*IMAQKDAGLAVWFM
Trigger: CATAAACCACACAGCTAGCCCGGCATCCTTTTGTGCCATTATCAAAAGCATGTCAATCAATAAGGAAAGAGTGCCAGTGACCATGGGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp TCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCTCATCATCTCTCAGCAGTGTATaGAAATGGTTCTCCACACCT +
Preference number: 2 (lower is better)
Translates to: SGWEWQHIVLFTLLLPSSSLSSV*KWFSTP
Trigger: AGGTGTGGAGAACCATTTGCATACACTGCTGAGAGA...TGATGAGGGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp ATACTACCTTCATGTAGAAAGACTAACGTCCCACCTCTCCTGACCTGCTATCAAGGGTACCACCTCAAATaGTTTGTCATGCAGAGATCC +
Preference number: 2 (lower is better)
Translates to: ILPSCRKTNVPPLLTCYQGYHLK*FVMQRS
Trigger: GGATCTCTGCATGACAAAGCATTTGAGGTGGTACCC...TTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGAAGGTAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp GGACAAGAAGGGCCTGTTAGAAAAGTAAAGAAGGGACAGAGGGGACTCTGTCTGAGAATTCCATACATATaGACACACAAAAGTCCCCCA +
Preference number: 2 (lower is better)
Translates to: GQEGPVRKVKKGQRGLCLRIPYI*THKSPP
Trigger: TGGGGGACTTTTGTGTGTGCATATGTATGGAATTCT...CAGACAGAGTCCCCTCTGTCCCTTCTTTACTTTTCTAACAGGCCCTTCTTGTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp AGAAGGGACAGAGGGGACTCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTTGCTATCAAGAATTCTaGAGAAATGGCATTAAGAAG +
Preference number: 2 (lower is better)
Translates to: RRDRGDSVWMGVAAHSSVCYQEF*RNGIKK
Trigger: CTTCTTAATGCCATTTCTGCAGAATTCTTGATAGCA...AACAGAACTATGTGCTGCCACTCCCATCCAGACAGAGTCCCCTCTGTCCCTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp CAGCTATTTAGGGCTGCCCATTTTAAGGTTGGCCATGTTTACAGCAAACCAAGGATTTATTACAGAGTCTaGCATCCATCATGGGGACCA +
Preference number: 2 (lower is better)
Translates to: QLFRAAHFKVGHVYSKPRIYYRV*HPSWGP
Trigger: TGGTCCCCATGATGGATGGCAGACTCTGTAATAAAT...CCTTGGTTTGCTGTAAACATGGCCAACCTTAAAATGGGCAGCCCTAAATAGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp GACTCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCGATCAAAAGGCAATTaGATTTTGTTCAAGCTGCCA +
Preference number: 2 (lower is better)
Translates to: DSVWMGVAAHSSVHITVTRSKGN*ILFKLP
Trigger: TGGCAGCTTGAACAAAATGCAATTGCCTTTTGATCG...GGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR TCA 90 bp CAGCTATTTAGGGCTGCCCATTTTAAGGTTGGCCATGTTTACAGCAAACCAAGGTCACGCTCCTTTTTCTaGCAAAGAAAGCAAAAGGAA +
Preference number: 2 (lower is better)
Translates to: QLFRAAHFKVGHVYSKPRSRSFF*QRKQKE
Trigger: TTCCTTTTGCTTTCTTTGTCAGAAAAAGGAGCGTGA...CCTTGGTTTGCTGTAAACATGGCCAACCTTAAAATGGGCAGCCCTAAATAGCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR TCA 90 bp CATAGTGTTGGGGAAATAGCTGATCCAAGTATAAGTTGCATTGAACGTGTGGGTGCAAATATAGTTTATTaGGAAGGTGGCACACCAGGG +
Preference number: 2 (lower is better)
Translates to: HSVGEIADPSISCIERVGANIVY*EGGTPG
Trigger: CCCTGGTGTGCCACCTTCTCAATAAACTATATTTGC...ACCCACACGTTCAATGCAACTTATACTTGGATCAGCTATTTCCCCAACACTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CCA 90 bp CAAGCCCCAAAGGTCAAACCACTGAGCTACTACACAATGTGGAGGGATCCATTTCAAATCTCTGCTAGTTaGGAAAAACTTTTCTTGGCT +
Preference number: 2 (lower is better)
Translates to: QAPKVKPLSYYTMWRDPFQISAS*EKLFLA
Trigger: AGCCAAGAAAAGTTTTTCCCAACTAGCAGAGATTTG...AAATGGATCCCTCCACATTGTGTAGTAGCTCAGTGGTTTGACCTTTGGGGCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp ATACTACCTTCATGTAGAAAGACTAACGTCCCACCTCTCCTGACCTGCTATCAAGACCGTCCCTATACATaGACACCATTCATAAGAATT +
Preference number: 2 (lower is better)
Translates to: ILPSCRKTNVPPLLTCYQDRPYT*TPFIRI
Trigger: AATTCTTATGAATGGTGTGCATGTATAGGGACGGTC...TTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGAAGGTAGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR GCA 90 bp TCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCTCATCAATATTAATGATTGCTTaGCAAGCCCCAAAGGTCAAA +
Preference number: 2 (lower is better)
Translates to: SGWEWQHIVLFTLLLPSSILMIA*QAPKVK
Trigger: TTTGACCTTTGGGGCTTGGCAAGCAATCATTAATAT...TGATGAGGGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 72 bp TCCCCCACTCCTTCTTACATGCTCCACCCACACAGGTaGAGCAATATGGGGGTACCACCTCAAATGCTTTGT +
Preference number: 3 (lower is better)
Translates to: SPTPSYMLHPHR*SNMGVPPQMLC
Trigger: ACAAAGCATTTGAGGTGGTACCCCCATATTGCTGCACCTGTGTGGGTGGAGCATGTAAGAAGGAGTGGGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 72 bp GTTCACTTCGGTAACTCCAGAACTCCTACCGTGAAATaGAGGCAGAGACAGGAGACTCTCTGGATGCCCACA +
Preference number: 3 (lower is better)
Translates to: VHFGNSRTPTVK*RQRQETLWMPT
Trigger: TGTGGGCATCCAGAGAGTCTCCTGTCTCTGCCTCCATTTCACGGTAGGAGTTCTGGAGTTACCGAAGTGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 72 bp CTTCTTACATGCTCCACCCACACAGGTGCAGCAATATaGGGGTACCACCTCAAATGCTTTGTCATGCAGAGA +
Preference number: 3 (lower is better)
Translates to: LLTCSTHTGAAI*GYHLKCFVMQR
Trigger: TCTCTGCATGACAAAGCATTTGAGGTGGTACCCCCATATTGCTGCACCTGTGTGGGTGGAGCATGTAAGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 72 bp AAAGAAGGGACAGAGGGGACTCTGTCTGGATGGGAGTaGCAGCACATAGTTCTGTTCACATTACTGTTACCC +
Preference number: 3 (lower is better)
Translates to: KEGTEGTLSGWE*QHIVLFTLLLP
Trigger: GGGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGAGTCCCCTCTGTCCCTTCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 72 bp TCTGCCAGAGACAAATGCCCTGCAAATATAGTTTATTaGGAAGGTGGCACACCAGGGGAAAGTAGCCCAGAG +
Preference number: 3 (lower is better)
Translates to: SARDKCPANIVY*EGGTPGESSPE
Trigger: CTCTGGGCTACTTTCCCCTGGTGTGCCACCTTCTCAATAAACTATATTTGCAGGGCATTTGTCTCTGGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CAA 90 bp TCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCTCCATAAGCATGATGTCTaGAGCTCAGATCCCCAGAGT +
Preference number: 3 (lower is better)
Translates to: SVWMGVAAHSSVHITVTLHKHDV*SSDPQS
Trigger: ACTCTGGGGATCTGAGCTCAAGACATCATGCTTATG...GAGGGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 72 bp AAAAGTAAAGAAGGGACAGAGGGGACTCTGTCTGGATaGGAGTGGCAGCACATAGTTCTGTTCACATTACTG +
Preference number: 3 (lower is better)
Translates to: KSKEGTEGTLSG*EWQHIVLFTLL
Trigger: CAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGAGTCCCCTCTGTCCCTTCTTTACTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 72 bp CACACAGGTGCAGCAATATGGGGGTACCACCTCAAATaGTTTGTCATGCAGAGATCCTTAAGTACTTGGATA +
Preference number: 3 (lower is better)
Translates to: HTGAAIWGYHLK*FVMQRSLSTWI
Trigger: TATCCAAGTACTTAAGGATCTCTGCATGACAAAGCATTTGAGGTGGTACCCCCATATTGCTGCACCTGTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CCA 72 bp TCTAGAAAGGTTTCATTTGAATCCCTAAGAGGCATTTaGTTCTCAGTCCTAGTCCCTTTCCTGACAGGCGGT +
Preference number: 3 (lower is better)
Translates to: SRKVSFESLRGI*FSVLVPFLTGG
Trigger: ACCGCCTGTCAGGAAAGGGACTAGGACTGAGAACCAAATGCCTCTTAGGGATTCAAATGAAACCTTTCTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 72 bp GAACAGAGACCTGCATTCAGGATAAAAGTAACCTCGTaGCTTCTGAGACAACTAAAGAATGAGTCTGGAGGT +
Preference number: 3 (lower is better)
Translates to: EQRPAFRIKVTS*LLRQLKNESGG
Trigger: ACCTCCAGACTCATTCTTTAGTTGTCTCAGAAGGCACGAGGTTACTTTTATCCTGAATGCAGGTCTCTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR-3UTR CAA 90 bp TCTGTCTGGATGGGAGTGGCAGCACATAGTTCTGTTCACATTACTGTTACCCTCGGCACTCTTTCCTTATaGATTGACATGCTTTTGATA +
Preference number: 3 (lower is better)
Translates to: SVWMGVAAHSSVHITVTLGTLSL*IDMLLI
Trigger: TATCAAAAGCATGTCAATCAATAAGGAAAGAGTGCC...GAGGGTAACAGTAATGTGAACAGAACTATGTGCTGCCACTCCCATCCAGACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 72 bp TACCTTCATGTAGAAAGACTAACGTCCCACCTCTCCTaGCCTGCTATCAAGAATTCTGCAGAAATGGCATTA +
Preference number: 3 (lower is better)
Translates to: YLHVERLTSHLS*PAIKNSAEMAL
Trigger: TAATGCCATTTCTGCAGAATTCTTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGAAGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 72 bp TCATGTAGAAAGACTAACGTCCCACCTCTCCTGACCTaGTATCAAGAATTCTGCAGAAATGGCATTAAGAAG +
Preference number: 3 (lower is better)
Translates to: SCRKTNVPPLLT*YQEFCRNGIKK
Trigger: CTTCTTAATGCCATTTCTGCAGAATTCTTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 72 bp CATAGTGTTGGGGAAATAGCTGATCCAAGTATAAGTTaGATTGAACGTGTGGGTATTGAGTACCTGCAGGAA +
Preference number: 3 (lower is better)
Translates to: HSVGEIADPSIS*IERVGIEYLQE
Trigger: TTCCTGCAGGTACTCAATACCCACACGTTCAATGCAACTTATACTTGGATCAGCTATTTCCCCAACACTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 72 bp TTTAAATCAATAAAACGACAGCCCATTGTTCATCACTaGGTCTTGAACACTGGGTCTGAACGTACAAGGGAG +
Preference number: 3 (lower is better)
Translates to: FKSIKRQPIVHH*VLNTGSERTRE
Trigger: CTCCCTTGTACGTTCAGACCCAGTGTTCAAGACTCAGTGATGAACAATGGGCTGTCGTTTTATTGATTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR GCA 72 bp AAACTGAATATTCTTTACTATTTGGGAACAGAGACCTaGATTCAGGATAAAAGTAACCTCGTGCCTTCTGAG +
Preference number: 3 (lower is better)
Translates to: KLNILYYLGTET*IQDKSNLVPSE
Trigger: CTCAGAAGGCACGAGGTTACTTTTATCCTGAATGCAGGTCTCTGTTCCCAAATAGTAAAGAATATTCAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR TCA 72 bp AGCTGCCCTTACCTTAATAGGAAACTTCTAGAAAACTaGATATTCTTTACTATTTGGGAACAGAGACCTGCA +
Preference number: 3 (lower is better)
Translates to: SCPYLNRKLLEN*IFFTIWEQRPA
Trigger: TGCAGGTCTCTGTTCCCAAATAGTAAAGAATATTCAGTTTTCTAGAAGTTTCCTATTAAGGTAAGGGCAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR TCA 90 bp CACTCCTTCTTACATGCTCCACCCACACAGGTGCAGCAATATGGGGGTACCACCTCGGTTGGCCTGCTCTaGCACTCCTTCTCCATAGCG +
Preference number: 4 (lower is better)
Translates to: HSFLHAPPTQVQQYGGTTSVGLL*HSFSIA
Trigger: CGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGA...GGTGGTACCCCCATATTGCTGCACCTGTGTGGGTGGAGCATGTAAGAAGGAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR TCA 90 bp CACTCCTTCTTACATGCTCCACCCACACAGGTGCAGCAATATGGGGGTACCACCAATGCTCACAGTTGTTaGCCAGCAAGTCATAGGCTA +
Preference number: 4 (lower is better)
Translates to: HSFLHAPPTQVQQYGGTTNAHSC*PASHRL
Trigger: TAGCCTATGACTTGCTGGTCAACAACTGTGAGCATT...GGTGGTACCCCCATATTGCTGCACCTGTGTGGGTGGAGCATGTAAGAAGGAGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CAA 72 bp GATCCTCAGCTGGCTCGATCAAAAGGCAATTGCATTTaGTTCAAGCTGCCACGGCAAATCTCTGCTAGTTGG +
Preference number: 4 (lower is better)
Translates to: DPQLARSKGNCI*FKLPRQISASW
Trigger: CCAACTAGCAGAGATTTGCCGTGGCAGCTTGAACAAAATGCAATTGCCTTTTGATCGAGCCAGCTGAGGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR TCA 90 bp TCCATCATGGGGACCATGAGCAATAATGATGCATTCAAAATAAGTATTCACCCTTCGGTTGGCCTGCTCTaGCACTCCTTCTCCATAGCG +
Preference number: 4 (lower is better)
Translates to: SIMGTMSNNDAFKISIHPSVGLL*HSFSIA
Trigger: CGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGA...AGGGTGAATACTTATTTTGAATGCATCATTATTGCTCATGGTCCCCATGATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
3UTR CAA 72 bp CTGTTAAGATCCTCAGCTGGCTCGATCAAAAGGCAATaGCATTTTGTTCAAGCTGCCACGGCAAATCTCTGC +
Preference number: 4 (lower is better)
Translates to: LLRSSAGSIKRQ*HFVQAATANLC
Trigger: GCAGAGATTTGCCGTGGCAGCTTGAACAAAATGCAATTGCCTTTTGATCGAGCCAGCTGAGGATCTTAACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR GCA 90 bp CAAGCCCCAAAGGTCAAACCACTGAGCTACTACACAATGTGGAGGGATCCATTTAATGCCATCTATAGGTaGAATGTTGATCACGTAGCC +
Preference number: 4 (lower is better)
Translates to: QAPKVKPLSYYTMWRDPFNAIYR*NVDHVA
Trigger: GGCTACGTGATCAACATTGCACCTATAGATGGCATT...AAATGGATCCCTCCACATTGTGTAGTAGCTCAGTGGTTTGACCTTTGGGGCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
3UTR CAA 72 bp GTCACTGGCACTCTTTCCTTATTGATTGACATGCTTTaGATAATGGCACAAAAGGATGCCGGGCTAGCTGTG +
Preference number: 4 (lower is better)
Translates to: VTGTLSLLIDML*IMAQKDAGLAV
Trigger: CACAGCTAGCCCGGCATCCTTTTGTGCCATTATCAAAAGCATGTCAATCAATAAGGAAAGAGTGCCAGTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR GCA 90 bp CAAGCCCCAAAGGTCAAACCACTGAGCTACTACACAATGTGGAGGGATCCATTTACATCCTTCAAAAGCTaGATTTTCACCAAGGCCTTT +
Preference number: 4 (lower is better)
Translates to: QAPKVKPLSYYTMWRDPFTSFKS*IFTKAF
Trigger: AAAGGCCTTGGTGAAAATGCAGCTTTTGAAGGATGT...AAATGGATCCCTCCACATTGTGTAGTAGCTCAGTGGTTTGACCTTTGGGGCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR TCA 90 bp TTAATATTAATGATTGCTTGCCAAGCCCCAAAGGTCAAACCACTGAGCTACTACACAAGCCGAGGAATGTaGAGATATCAATACCAGCTG +
Preference number: 4 (lower is better)
Translates to: LILMIACQAPKVKPLSYYTSRGM*RYQYQL
Trigger: CAGCTGGTATTGATATCTTCACATTCCTCGGCTTGT...GTAGTAGCTCAGTGGTTTGACCTTTGGGGCTTGGCAAGCAATCATTAATATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR TCA 90 bp ATGGGGACCATGAGCAATAATGATGCATTCAAAATAAGTATTCACCCTAGGATTAATGCTCACAGTTGTTaGCCAGCAAGTCATAGGCTA +
Preference number: 4 (lower is better)
Translates to: MGTMSNNDAFKISIHPRINAHSC*PASHRL
Trigger: TAGCCTATGACTTGCTGGTCAACAACTGTGAGCATT...AATCCTAGGGTGAATACTTATTTTGAATGCATCATTATTGCTCATGGTCCCCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS-3UTR GCA 90 bp CCATCCATCATGGGGACCATGAGCAATAATGATGCATTCAAAATAAGTATTCACAATGCCATCTATAGGTaGAATGTTGATCACGTAGCC +
Preference number: 4 (lower is better)
Translates to: PSIMGTMSNNDAFKISIHNAIYR*NVDHVA
Trigger: GGCTACGTGATCAACATTGCACCTATAGATGGCATT...GTGAATACTTATTTTGAATGCATCATTATTGCTCATGGTCCCCATGATGGATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS-3UTR GCA 90 bp CCATCCATCATGGGGACCATGAGCAATAATGATGCATTCAAAATAAGTATTCACAGCAAGGTTACAAAATaGTCACAGTTGTTGACCAGC +
Preference number: 4 (lower is better)
Translates to: PSIMGTMSNNDAFKISIHSKVTK*SQLLTS
Trigger: GCTGGTCAACAACTGTGAGCATTTTGTAACCTTGCT...GTGAATACTTATTTTGAATGCATCATTATTGCTCATGGTCCCCATGATGGATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS-3UTR GCA 90 bp TCCATCATGGGGACCATGAGCAATAATGATGCATTCAAAATAAGTATTCACCCTACATCCTTCAAAAGCTaGATTTTCACCAAGGCCTTT +
Preference number: 4 (lower is better)
Translates to: SIMGTMSNNDAFKISIHPTSFKS*IFTKAF
Trigger: AAAGGCCTTGGTGAAAATGCAGCTTTTGAAGGATGT...AGGGTGAATACTTATTTTGAATGCATCATTATTGCTCATGGTCCCCATGATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
3UTR CAA 72 bp TTAAATATAGCTCTTTGCATTAATATTAATGATTGCTaGCCAAGCCCCAAAGGTCAAACCACTGAGCTACTA +
Preference number: 4 (lower is better)
Translates to: LNIALCININDC*PSPKGQTTELL
Trigger: TAGTAGCTCAGTGGTTTGACCTTTGGGGCTTGGCAAGCAATCATTAATATTAATGCAAAGAGCTATATTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS TCA 90 bp AGCTGCCACCAATCCGATGGTGCCGATTGCTCGGTTGGCCTGCTCTaGCACTCCTTCTCCATAGCGCAGCAAGGTTACAAAATGCTCACA +
Preference number: 5 (lower is better)
Translates to: SCHQSDGADCSVGLL*HSFSIAQQGYKMLT
Trigger: TGTGAGCATTTTGTAACCTTGCTGCGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGAGCAATCGGCACCATCGGATTGGTGGCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CCA 90 bp TATCAATACCAGCTGCCACCAATCCGATGGTGCCGATTGCTCGGTTaGCCTGCTCTGACACTCCTTCTCCATAGCGCAGCAAGGTTACAA +
Preference number: 5 (lower is better)
Translates to: YQYQLPPIRWCRLLG*PALTLLLHSAARLQ
Trigger: TTGTAACCTTGCTGCGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGAGCAATCGGCACCATCGGATTGGTGGCAGCTGGTATTGATA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CCA 90 bp GTGCTGATAGCAAGGACGGAACACTTCAATCAAGTCTCCTGGGTGTaGGTTGTGAGGATAGGTCAGACTGAAGCAATCATTTACCGCCAT +
Preference number: 5 (lower is better)
Translates to: VLIARTEHFNQVSWV*VVRIGQTEAIIYRH
Trigger: ATGGCGGTAAATGATTGCTTCAGTCTGACCTATCCTCACAACCCACACCCAGGAGACTTGATTGAAGTGTTCCGTCCTTGCTATCAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089824.11
ENSMUST00000161294.2
ENSMUST00000162747.8
CDS CCA 90 bp TGCCCAGTGCTGATAGCAAGGACGGAACACTTCAATCAAGTCTCCTaGGTGTGGGTTGTGAGGATAGGTCAGACTGAAGCAATCATTTAC +
Preference number: 5 (lower is better)
Translates to: CPVLIARTEHFNQVS*VWVVRIGQTEAIIY
Trigger: GTAAATGATTGCTTCAGTCTGACCTATCCTCACAACCCACACCCAGGAGACTTGATTGAAGTGTTCCGTCCTTGCTATCAGCACTGGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089824.11
ENSMUST00000161294.2
ENSMUST00000162747.8
CDS-3UTR CAA 90 bp ATACTACCTTCATGTAGAAAGACTAACGTCCCACCTCTCCTGACCTGCTATCAATTCGTTCTTTGTCTTTaGGGAAACAAGCCGAGGAAT +
Preference number: 5 (lower is better)
Translates to: ILPSCRKTNVPPLLTCYQFVLCL*GNKPRN
Trigger: ATTCCTCGGCTTGTTTCCCAAAAGACAAAGAACGAA...TTGATAGCAGGTCAGGAGAGGTGGGACGTTAGTCTTTCTACATGAAGGTAGTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000089824.11
CDS-3UTR CAA 90 bp CCATCCATCATGGGGACCATGAGCAATAATGATGCATTCAAAATAAGTATTCACTTCGTTCTTTGTCTTTaGGGAAACAAGCCGAGGAAT +
Preference number: 5 (lower is better)
Translates to: PSIMGTMSNNDAFKISIHFVLCL*GNKPRN
Trigger: ATTCCTCGGCTTGTTTCCCAAAAGACAAAGAACGAA...GTGAATACTTATTTTGAATGCATCATTATTGCTCATGGTCCCCATGATGGATGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CCA 72 bp CAGCTGCCACCAATCCGATGGTGCCGATTGCTCGGTTaGCCTGCTCTGACACTCCTTCTCCATAGCGCAGCA +
Preference number: 6 (lower is better)
Translates to: QLPPIRWCRLLG*PALTLLLHSAA
Trigger: TGCTGCGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGAGCAATCGGCACCATCGGATTGGTGGCAGCTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS TCA 72 bp CAATCCGATGGTGCCGATTGCTCGGTTGGCCTGCTCTaGCACTCCTTCTCCATAGCGCAGCAAGGTTACAAA +
Preference number: 6 (lower is better)
Translates to: QSDGADCSVGLL*HSFSIAQQGYK
Trigger: TTTGTAACCTTGCTGCGCTATGGAGAAGGAGTGTCAGAGCAGGCCAACCGAGCAATCGGCACCATCGGATTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CAA 72 bp TATCAATACCAGCTGCCACCAATCCGATGGTGCCGATaGCTCGGTTGGCCTGCTCTGACACTCCTTCTCCAT +
Preference number: 6 (lower is better)
Translates to: YQYQLPPIRWCR*LGWPALTLLLH
Trigger: ATGGAGAAGGAGTGTCAGAGCAGGCCAACCGAGCAATCGGCACCATCGGATTGGTGGCAGCTGGTATTGATA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS GCA 72 bp AAACAAGCCGAGGAATGTGAAGATATCAATACCAGCTaGCACCAATCCGATGGTGCCGATTGCTCGGTTGGC +
Preference number: 6 (lower is better)
Translates to: KQAEECEDINTS*HQSDGADCSVG
Trigger: GCCAACCGAGCAATCGGCACCATCGGATTGGTGGCAGCTGGTATTGATATCTTCACATTCCTCGGCTTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CCA 72 bp CTGATAGCAAGGACGGAACACTTCAATCAAGTCTCCTaGGTGTGGGTTGTGAGGATAGGTCAGACTGAAGCA +
Preference number: 6 (lower is better)
Translates to: LIARTEHFNQVS*VWVVRIGQTEA
Trigger: TGCTTCAGTCTGACCTATCCTCACAACCCACACCCAGGAGACTTGATTGAAGTGTTCCGTCCTTGCTATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089824.11
ENSMUST00000161294.2
ENSMUST00000162747.8
CDS CCA 72 bp GCAAGGACGGAACACTTCAATCAAGTCTCCTGGGTGTaGGTTGTGAGGATAGGTCAGACTGAAGCAATCATT +
Preference number: 6 (lower is better)
Translates to: ARTEHFNQVSWV*VVRIGQTEAII
Trigger: AATGATTGCTTCAGTCTGACCTATCCTCACAACCCACACCCAGGAGACTTGATTGAAGTGTTCCGTCCTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000089824.11
ENSMUST00000161294.2
ENSMUST00000162747.8
CDS TCA 72 bp TCGTTCTTTGTCTTTTGGGAAACAAGCCGAGGAATGTaGAGATATCAATACCAGCTGCCACCAATCCGATGG +
Preference number: 6 (lower is better)
Translates to: SFFVFWETSRGM*RYQYQLPPIRW
Trigger: CCATCGGATTGGTGGCAGCTGGTATTGATATCTTCACATTCCTCGGCTTGTTTCCCAAAAGACAAAGAACGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS GCA 72 bp CTGTATGTGTCATTTCCCACAACATCCTTCAAAAGCTaGATTTTCACCAAGGCCTTTGTGCTGAACACGGAC +
Preference number: 6 (lower is better)
Translates to: LYVSFPTTSFKS*IFTKAFVLNTD
Trigger: GTCCGTGTTCAGCACAAAGGCCTTGGTGAAAATGCAGCTTTTGAAGGATGTTGTGGGAAATGACACATACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CAA 90 bp ACTCTGACCGTTGTATCACCTCCTCCACAGGAAGAGGAGGGTATGTaGTGTCGTACTTGTTATTTATTCTGTATGTGTCATTTCCCACAA +
Preference number: 6 (lower is better)
Translates to: TLTVVSPPPQEEEGM*CRTCYLFCMCHFPQ
Trigger: TTGTGGGAAATGACACATACAGAATAAATAACAAGTACGACACAACATACCCTCCTCTTCCTGTGGAGGAGGTGATACAACGGTCAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CAA 72 bp TCCTCCACAGGAAGAGGAGGGTATGTTGTGTCGTACTaGTTATTTATTCTGTATGTGTCATTTCCCACAACA +
Preference number: 6 (lower is better)
Translates to: SSTGRGGYVVSY*LFILYVSFPTT
Trigger: TGTTGTGGGAAATGACACATACAGAATAAATAACAAGTACGACACAACATACCCTCCTCTTCCTGTGGAGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8
CDS CAA 72 bp GTTGTATCACCTCCTCCACAGGAAGAGGAGGGTATGTaGTGTCGTACTTGTTATTTATTCTGTATGTGTCAT +
Preference number: 6 (lower is better)
Translates to: VVSPPPQEEEGM*CRTCYLFCMCH
Trigger: ATGACACATACAGAATAAATAACAAGTACGACACAACATACCCTCCTCTTCCTGTGGAGGAGGTGATACAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000089824.11
ENSMUST00000162747.8