Pregenerated sensors for PLAA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028577Ensembl transcript IDs: ENSMUST00000107107.9, ENSMUST00000127656.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GTTCCCTGTAAATGGATCAACTCCAGTCATGGTGGTGTCCATACCTaGAGAACCTGGCATGTAACGCCCAGCACCTGTGAAAGGATCTGC | + |
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Preference number: 5 (lower is better) Translates to: VPCKWINSSHGGVHT*RTWHVTPSTCERIC Trigger: GCAGATCCTTTCACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAGTTGATCCATTTACAGGGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 90 bp | AAATGGATCAACTCCAGTCATGGTGGTGTCCATACCTGCAGAACCTaGCATGTAACGCCCAGCACCTGTGAAAGGATCTGCTGTCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: KWINSSHGGVHTCRT*HVTPSTCERICCLH Trigger: GTGCAGACAGCAGATCCTTTCACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAGTTGATCCATTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 90 bp | CCTTCTCTAGTACCTGGCTCACTGAGATGTTCCCTCCCAGGAAGCTaGTCCGCATTAATATCCCCCAAGTCACCAGTTTTGGAATCGATA | + |
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Preference number: 5 (lower is better) Translates to: PSLVPGSLRCSLPGS*SALISPKSPVLESI Trigger: TATCGATTCCAAAACTGGTGACTTGGGGGATATTAATGCGGAGCAGCTTCCTGGGAGGGAACATCTCAGTGAGCCAGGTACTAGAGAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 90 bp | GACATCAGTGACTCCCTCTGGGACATCATGAGCTTTTGTCCTGCCTaGCTAACAAAGCAATTGCAAAAAGTCCTAAGAGCAAGCAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: DISDSLWDIMSFCPA*LTKQLQKVLRASSW Trigger: CCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGCTTTGTTAGTCAGGCAGGACAAAAGCTCATGATGTCCCAGAGGGAGTCACTGATGTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 90 bp | ATGATACACACACAAGACACAAAATTAGAGTGGCCGCTCATACAGTaGATTTCTGTAAAGCCCCTGTTAGGACTGTCTGGAGCCCAGAGG | + |
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Preference number: 5 (lower is better) Translates to: MIHTQDTKLEWPLIQ*ISVKPLLGLSGAQR Trigger: CCTCTGGGCTCCAGACAGTCCTAACAGGGGCTTTACAGAAATGCACTGTATGAGCGGCCACTCTAATTTTGTGTCTTGTGTGTGTATCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 90 bp | ACCACAATGTCACCATTTTCCAGTACGCAGCAACACCATATAGACTaGGCTGGAAGTCGGATTGTTTGGGCGCATTCACCATGTTTCCAT | + |
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Preference number: 5 (lower is better) Translates to: TTMSPFSSTQQHHID*AGSRIVWAHSPCFH Trigger: ATGGAAACATGGTGAATGCGCCCAAACAATCCGACTTCCAGCTCAGTCTATATGGTGTTGCTGCGTACTGGAAAATGGTGACATTGTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 90 bp | TCTCTCAAAAGCTTTGATTTCCTCAGCACTTGCTGTCCGCTCCTCTaGCTCTGTAAACACCCTAATAATACCATCACTCGCACCAACCAC | + |
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Preference number: 5 (lower is better) Translates to: SLKSFDFLSTCCPLL*LCKHPNNTITRTNH Trigger: GTGGTTGGTGCGAGTGATGGTATTATTAGGGTGTTTACAGAGTCAGAGGAGCGGACAGCAAGTGCTGAGGAAATCAAAGCTTTTGAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 90 bp | ACTAACAAAGCAATTGCAAAAAGTCCTAAGAGCAAGCAGCTGGTTTaGTGGCTTTCCTTTGGGGTTCAGAAGGTTGATAAGATGGCTGCT | + |
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Preference number: 5 (lower is better) Translates to: TNKAIAKSPKSKQLV*WLSFGVQKVDKMAA Trigger: AGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGCTTTGTTAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 90 bp | ATGTCACTTGAGGGTATGATACACACACAAGACACAAAATTAGAGTaGCCGCTCATACAGTGCATTTCTGTAAAGCCCCTGTTAGGACTG | + |
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Preference number: 5 (lower is better) Translates to: MSLEGMIHTQDTKLE*PLIQCISVKPLLGL Trigger: CAGTCCTAACAGGGGCTTTACAGAAATGCACTGTATGAGCGGCCACTCTAATTTTGTGTCTTGTGTGTGTATCATACCCTCAAGTGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 90 bp | AATGTCACCATTTTCCAGTACGCAGCAACACCATATAGACTGAGCTaGAAGTCGGATTGTTTGGGCGCATTCACCATGTTTCCATATTCT | + |
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Preference number: 5 (lower is better) Translates to: NVTIFQYAATPYRLS*KSDCLGAFTMFPYS Trigger: AGAATATGGAAACATGGTGAATGCGCCCAAACAATCCGACTTCCAGCTCAGTCTATATGGTGTTGCTGCGTACTGGAAAATGGTGACATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 90 bp | AGCTGGTTTGCTGGCTTTCCTTTGGGGTTCAGAAGGTTGATAAGATaGCTGCTGAACTGGTCTCCTTTTTCATTGCAGAAATTCTCATTC | + |
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Preference number: 5 (lower is better) Translates to: SWFAGFPLGFRRLIR*LLNWSPFSLQKFSF Trigger: GAATGAGAATTTCTGCAATGAAAAAGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 90 bp | AACAAAGCAATTGCAAAAAGTCCTAAGAGCAAGCAGCTGGTTTGCTaGCTTTCCTTTGGGGTTCAGAAGGTTGATAAGATGGCTGCTGAA | + |
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Preference number: 5 (lower is better) Translates to: NKAIAKSPKSKQLVC*LSFGVQKVDKMAAE Trigger: TTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGCTTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 90 bp | GGAAAGACAATGTCTTCAGGCCAGTTGATAGCTTTCCACAAAATCTaGAGTTGCTGGGCCGTTGGCTTTTCTGAGGAATTATTACAAATC | + |
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Preference number: 5 (lower is better) Translates to: GKTMSSGQLIAFHKI*SCWAVGFSEELLQI Trigger: GATTTGTAATAATTCCTCAGAAAAGCCAACGGCCCAGCAACTTCAGATTTTGTGGAAAGCTATCAACTGGCCTGAAGACATTGTCTTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 90 bp | AAAATGCAAATATTGTGGTCATTTCCTCCAGTGGCAATCAGTCCATaGGGATATATGTCACTTGAGGGTATGATACACACACAAGACACA | + |
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Preference number: 5 (lower is better) Translates to: KMQILWSFPPVAISP*GYMSLEGMIHTQDT Trigger: TGTGTCTTGTGTGTGTATCATACCCTCAAGTGACATATATCCTCATGGACTGATTGCCACTGGAGGAAATGACCACAATATTTGCATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 90 bp | CATTTTTCTGCAAGAAGTTGTATGCAACTAGCCAGGGATCGTCACTaGCATTATATGGTAATTTATACGATGGTCCACCTTCATTCACAT | + |
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Preference number: 5 (lower is better) Translates to: HFSARSCMQLARDRH*HYMVIYTMVHLHSH Trigger: ATGTGAATGAAGGTGGACCATCGTATAAATTACCATATAATGTCAGTGACGATCCCTGGCTAGTTGCATACAACTTCTTGCAGAAAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000107107.9 ENSMUST00000127656.3 |
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| CDS CCA 72 bp | AACTCCAGTCATGGTGGTGTCCATACCTGCAGAACCTaGCATGTAACGCCCAGCACCTGTGAAAGGATCTGC | + |
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Preference number: 6 (lower is better) Translates to: NSSHGGVHTCRT*HVTPSTCERIC Trigger: GCAGATCCTTTCACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 72 bp | GTACCTGGCTCACTGAGATGTTCCCTCCCAGGAAGCTaGTCCGCATTAATATCCCCCAAGTCACCAGTTTTG | + |
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Preference number: 6 (lower is better) Translates to: VPGSLRCSLPGS*SALISPKSPVL Trigger: CAAAACTGGTGACTTGGGGGATATTAATGCGGAGCAGCTTCCTGGGAGGGAACATCTCAGTGAGCCAGGTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 72 bp | AAATGGATCAACTCCAGTCATGGTGGTGTCCATACCTaGAGAACCTGGCATGTAACGCCCAGCACCTGTGAA | + |
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Preference number: 6 (lower is better) Translates to: KWINSSHGGVHT*RTWHVTPSTCE Trigger: TTCACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAGTTGATCCATTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | GAAAGGATCTGCTGTCTGCACTGTGTTGGAAGGTCCTaGAGTTCCTGGAACATAGCGACCACCACCTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: ERICCLHCVGRS*SSWNIATTTCK Trigger: TTTACAGGTGGTGGTCGCTATGTTCCAGGAACTTCAGGACCTTCCAACACAGTGCAGACAGCAGATCCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | ACCTGGCATGTAACGCCCAGCACCTGTAAACGGATCTaGAAAACTGGTATTCCCAAGTCCCAGTGTTTGACC | + |
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Preference number: 6 (lower is better) Translates to: TWHVTPSTCKRI*KTGIPKSQCLT Trigger: GGTCAAACACTGGGACTTGGGAATACCAGTTTTTCAGATCCGTTTACAGGTGCTGGGCGTTACATGCCAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127656.3 |
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| CDS GCA 72 bp | AAATGGATCAACTCCAGTCATGGTGGTGTCCATACCTaGAGAACCTGGCATGTAACGCCCAGCACCTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: KWINSSHGGVHT*RTWHVTPSTCK Trigger: TTTACAGGTGCTGGGCGTTACATGCCAGGTTCTGCAGGTATGGACACCACCATGACTGGAGTTGATCCATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000127656.3 |
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| CDS TCA 72 bp | TCACCATTTTCCAGTACGCAGCAACACCATATAGACTaGGCTGGAAGTCGGATTGTTTGGGCGCATTCACCA | + |
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Preference number: 6 (lower is better) Translates to: SPFSSTQQHHID*AGSRIVWAHSP Trigger: TGGTGAATGCGCCCAAACAATCCGACTTCCAGCTCAGTCTATATGGTGTTGCTGCGTACTGGAAAATGGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | TCCTGGAACATAGCGACCACCACCTGTAAACGGATCTaGAAAACTGGTATTCCCAAGTCCCAGTGTTTGACC | + |
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Preference number: 6 (lower is better) Translates to: SWNIATTTCKRI*KTGIPKSQCLT Trigger: GGTCAAACACTGGGACTTGGGAATACCAGTTTTTCAGATCCGTTTACAGGTGGTGGTCGCTATGTTCCAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CAA 90 bp | TTGCAAAAAGTCCTAAGAGCAAGCAGCTGGTTTGCTGGCTTTCCTTaGGGGTTCAGAAGGTTGATAAGATGGCTGCTGAACTGGTCTCCT | + |
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Preference number: 6 (lower is better) Translates to: LQKVLRASSWFAGFP*GFRRLIRWLLNWSP Trigger: AGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCTGCTTGCTCTTAGGACTTTTTGCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CAA 90 bp | AGAGCAAGCAGCTGGTTTGCTGGCTTTCCTTTGGGGTTCAGAAGGTaGATAAGATGGCTGCTGAACTGGTCTCCTTTTTCATTGCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: RASSWFAGFPLGFRR*IRWLLNWSPFSLQK Trigger: TTTCTGCAATGAAAAAGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCTGCTTGCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CAA 72 bp | AGCTGGTTTGCTGGCTTTCCTTTGGGGTTCAGAAGGTaGATAAGATGGCTGCTGAACTGGTCTCCTTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: SWFAGFPLGFRR*IRWLLNWSPFS Trigger: TGAAAAAGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | GACTCCCTCTGGGACATCATGAGCTTTTGTCCTGCCTaGCTAACAAAGCAATTGCAAAAAGTCCTAAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: DSLWDIMSFCPA*LTKQLQKVLRA Trigger: TGCTCTTAGGACTTTTTGCAATTGCTTTGTTAGTCAGGCAGGACAAAAGCTCATGATGTCCCAGAGGGAGTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 72 bp | ACACAAGACACAAAATTAGAGTGGCCGCTCATACAGTaGATTTCTGTAAAGCCCCTGTTAGGACTGTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: TQDTKLEWPLIQ*ISVKPLLGLSG Trigger: TCCAGACAGTCCTAACAGGGGCTTTACAGAAATGCACTGTATGAGCGGCCACTCTAATTTTGTGTCTTGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 72 bp | TGTCCAAAGTATACTTCCAGACACTCGCCAGTGATCTaGCACCTTCTAATACTAGCATCGTTTGCACAGGAA | + |
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Preference number: 6 (lower is better) Translates to: CPKYTSRHSPVI*HLLILASFAQE Trigger: TTCCTGTGCAAACGATGCTAGTATTAGAAGGTGGCAGATCACTGGCGAGTGTCTGGAAGTATACTTTGGACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 72 bp | GCAATTGCAAAAAGTCCTAAGAGCAAGCAGCTGGTTTaGTGGCTTTCCTTTGGGGTTCAGAAGGTTGATAAG | + |
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Preference number: 6 (lower is better) Translates to: AIAKSPKSKQLV*WLSFGVQKVDK Trigger: CTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS GCA 72 bp | AGAGCCACAAGGAGTCTAAACGTGGCTTCTAGGTCTTaGACAACTTCCAAGATTGTGCTAATTACTGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: RATRSLNVASRS*TTSKIVLITER Trigger: CCTCTCAGTAATTAGCACAATCTTGGAAGTTGTGCAAGACCTAGAAGCCACGTTTAGACTCCTTGTGGCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 72 bp | ATTTTCCAGTACGCAGCAACACCATATAGACTGAGCTaGAAGTCGGATTGTTTGGGCGCATTCACCATGTTT | + |
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Preference number: 6 (lower is better) Translates to: IFQYAATPYRLS*KSDCLGAFTMF Trigger: AAACATGGTGAATGCGCCCAAACAATCCGACTTCCAGCTCAGTCTATATGGTGTTGCTGCGTACTGGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 72 bp | GCTGGCTTTCCTTTGGGGTTCAGAAGGTTGATAAGATaGCTGCTGAACTGGTCTCCTTTTTCATTGCAGAAA | + |
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Preference number: 6 (lower is better) Translates to: AGFPLGFRRLIR*LLNWSPFSLQK Trigger: TTTCTGCAATGAAAAAGGAGACCAGTTCAGCAGCCATCTTATCAACCTTCTGAACCCCAAAGGAAAGCCAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 72 bp | ACAAAGCAATTGCAAAAAGTCCTAAGAGCAAGCAGCTaGTTTGCTGGCTTTCCTTTGGGGTTCAGAAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: TKQLQKVLRASS*FAGFPLGFRRL Trigger: CAACCTTCTGAACCCCAAAGGAAAGCCAGCAAACCAGCTGCTTGCTCTTAGGACTTTTTGCAATTGCTTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | ATGTCTTCAGGCCAGTTGATAGCTTTCCACAAAATCTaGAGTTGCTGGGCCGTTGGCTTTTCTGAGGAATTA | + |
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Preference number: 6 (lower is better) Translates to: MSSGQLIAFHKI*SCWAVGFSEEL Trigger: TAATTCCTCAGAAAAGCCAACGGCCCAGCAACTTCAGATTTTGTGGAAAGCTATCAACTGGCCTGAAGACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CCA 72 bp | GCGAGAAAATGCAAATATTGTGGTCATTTCCTCCAGTaGCAATCAGTCCATGAGGATATATGTCACTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: ARKCKYCGHFLQ*QSVHEDICHLR Trigger: CCTCAAGTGACATATATCCTCATGGACTGATTGCCACTGGAGGAAATGACCACAATATTTGCATTTTCTCGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CAA 72 bp | CGTTTGCACAGGAAAGAAATTCTGTCTCACTCAAGATaGCCAAGCCTCTTACACAGTCTTCATGCCCTAAAA | + |
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Preference number: 6 (lower is better) Translates to: RLHRKEILSHSR*PSLLHSLHALK Trigger: TTTTAGGGCATGAAGACTGTGTAAGAGGCTTGGCAATCTTGAGTGAGACAGAATTTCTTTCCTGTGCAAACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | ATATTGTGGTCATTTCCTCCAGTGGCAATCAGTCCATaGGGATATATGTCACTTGAGGGTATGATACACACA | + |
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Preference number: 6 (lower is better) Translates to: ILWSFPPVAISP*GYMSLEGMIHT Trigger: TGTGTGTATCATACCCTCAAGTGACATATATCCTCATGGACTGATTGCCACTGGAGGAAATGACCACAATAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS TCA 72 bp | GCAAGAAGTTGTATGCAACTAGCCAGGGATCGTCACTaGCATTATATGGTAATTTATACGATGGTCCACCTT | + |
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Preference number: 6 (lower is better) Translates to: ARSCMQLARDRH*HYMVIYTMVHL Trigger: AAGGTGGACCATCGTATAAATTACCATATAATGTCAGTGACGATCCCTGGCTAGTTGCATACAACTTCTTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000107107.9 ENSMUST00000127656.3 |
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| CDS CAA 72 bp | TATGAATGTTCTTATTACTCCCGGATTTCAGTTCTATaGCATGTGACATCAGTGACTCCCTCTGGGACATCA | + |
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Preference number: 6 (lower is better) Translates to: YECSYYSRISVL*HVTSVTPSGTS Trigger: TGATGTCCCAGAGGGAGTCACTGATGTCACATGCAATAGAACTGAAATCCGGGAGTAATAAGAACATTCATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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| CDS CAA 90 bp | GACTACAAACAGTATCTTTGTGACCCTTTAAAATATAAAGTGGCATaGGACTGTCCAGCGAGAAAATGCAAATATTGTGGTCATTTCCTC | + |
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Preference number: 6 (lower is better) Translates to: DYKQYLCDPLKYKVA*DCPARKCKYCGHFL Trigger: GAGGAAATGACCACAATATTTGCATTTTCTCGCTGGACAGTCCAATGCCACTTTATATTTTAAAGGGTCACAAAGATACTGTTTGTAGTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107107.9 |
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