RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLA2G6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042632

Ensembl transcript IDs: ENSMUST00000047816.15, ENSMUST00000166977.9, ENSMUST00000172403.9, ENSMUST00000172936.2, ENSMUST00000173109.2, ENSMUST00000173163.8, ENSMUST00000173632.8, ENSMUST00000174021.8

Found 485 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTaGCCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGG +
Preference number: 1 (lower is better)
Translates to: SPSPLSFQRRAHAQG*PLGARRAPSAVAAG
Trigger: CCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR GCA 90 bp GAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACATGGAGCTaGCAGGCCCAGCTTGGCCCTCAGTGTGCTGGCAGGCCCCGGGAG +
Preference number: 1 (lower is better)
Translates to: EPVCALSPSVRWTWS*QAQLGPQCAGRPRE
Trigger: CTCCCGGGGCCTGCCAGCACACTGAGGGCCAAGCTGGGCCTGGCAGCTCCATGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR GCA 90 bp AAGGGGCTGAGGGGAACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTaGAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTGCT +
Preference number: 1 (lower is better)
Translates to: KGLRGTLGFQPRVVK*RWTRRGASWEPVCA
Trigger: AGCACAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTTCCCCTCAGCCCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGTCAGGGAAAGGGGCTaGGGGGAACTCTGGGCTTTC +
Preference number: 2 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGVRERG*GELWAF
Trigger: GAAAGCCCAGAGTTCCCCTCAGCCCCTTTCCCTGAC...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGGTGGGCAGAAGGGGTaGGCAGCAGTGGCCAGGGAG +
Preference number: 2 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFGGQKG*AAVARE
Trigger: CTCCCTGGCCACTGCTGCTCACCCCTTCTGCCCACC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGGGTGGGCAGAAGGGGTaGGCAGCAGTGGCCAGGGAG +
Preference number: 2 (lower is better)
Translates to: REEHMHRVDLWELGGLLVGGQKG*AAVARE
Trigger: CTCCCTGGCCACTGCTGCTCACCCCTTCTGCCCACC...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCTTTTCTCTAGTCCCTaGCATCAGGGGGTGGGCAGA +
Preference number: 2 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLFSSP*HQGVGR
Trigger: TCTGCCCACCCCCTGATGTCAGGGACTAGAGAAAAG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAAGATGGACATGGAGCTaGCAGGCCCAGCTTGGCCCT +
Preference number: 2 (lower is better)
Translates to: VERLAGARGKVEWRWMPLRWTWS*QAQLGP
Trigger: AGGGCCAAGCTGGGCCTGGCAGCTCCATGTCCATCT...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGCGGTGGCGGCAGGGTaGAGAGGCTGGCAGGTGCGA +
Preference number: 2 (lower is better)
Translates to: HSPSREEHMHRVDLWELGAVAAG*RGWQVR
Trigger: TCGCACCTGCCAGCCTCTCCACCCTGCCGCCACCGC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGAGATGGACATGGAGCTaGCAGGCCCAGCTTGGCCCT +
Preference number: 2 (lower is better)
Translates to: APPHSPSREEHMHRVDLWRWTWS*QAQLGP
Trigger: AGGGCCAAGCTGGGCCTGGCAGCTCCATGTCCATCT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGTAGTAAAGTGCAGATaGACCAGGAGAGGTGCCTCG +
Preference number: 2 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGVVKCR*TRRGAS
Trigger: CGAGGCACCTCTCCTGGTCCATCTGCACTTTACTAC...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCGTAGTGTTGATCTCTaGTATGTGGGGTCCTTGATG +
Preference number: 2 (lower is better)
Translates to: QGGEAGRCEGQSRMALDARSVDL*YVGSLM
Trigger: CATCAAGGACCCCACATATCAGAGATCAACACTACG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGGTCAGGGAAAGGGGCTaGGGGGAACTCTGGGCTTTC +
Preference number: 2 (lower is better)
Translates to: REEHMHRVDLWELGGLLVVRERG*GELWAF
Trigger: GAAAGCCCAGAGTTCCCCTCAGCCCCTTTCCCTGAC...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGAGATGGACATGGAGCTaGCAGGCCCAGCTTGGCCCT +
Preference number: 2 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLRWTWS*QAQLGP
Trigger: AGGGCCAAGCTGGGCCTGGCAGCTCCATGTCCATCT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGTAGTAAAGTGCAGATaGACCAGGAGAGGTGCCTCG +
Preference number: 2 (lower is better)
Translates to: VERLAGARGKVEWRWMPLVVKCR*TRRGAS
Trigger: CGAGGCACCTCTCCTGGTCCATCTGCACTTTACTAC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAAGATGGACATGGAGCTaGCAGGCCCAGCTTGGCCCT +
Preference number: 2 (lower is better)
Translates to: HSPSREEHMHRVDLWELGRWTWS*QAQLGP
Trigger: AGGGCCAAGCTGGGCCTGGCAGCTCCATGTCCATCT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCAGATGGACATGGAGCTaGCAGGCCCAGCTTGGCCCT +
Preference number: 2 (lower is better)
Translates to: NSGLSASSSKVQMDQERCRWTWS*QAQLGP
Trigger: AGGGCCAAGCTGGGCCTGGCAGCTCCATGTCCATCT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCTTTTCTCTAGTCCCTaGCATCAGGGGGTGGGCAGA +
Preference number: 2 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFLFSSP*HQGVGR
Trigger: TCTGCCCACCCCCTGATGTCAGGGACTAGAGAAAAG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCGTAGTGTTGATCTCTaGTATGTGGGGTCCTTGATG +
Preference number: 2 (lower is better)
Translates to: APPHSPSREEHMHRVDLWRSVDL*YVGSLM
Trigger: CATCAAGGACCCCACATATCAGAGATCAACACTACG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACTTTTCTCTAGTCCCTaGCATCAGGGGGTGGGCAGA +
Preference number: 2 (lower is better)
Translates to: HSPSREEHMHRVDLWELGLFSSP*HQGVGR
Trigger: TCTGCCCACCCCCTGATGTCAGGGACTAGAGAAAAG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGTAGTAAAGTGCAGATaGACCAGGAGAGGTGCCTCG +
Preference number: 2 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFVVKCR*TRRGAS
Trigger: CGAGGCACCTCTCCTGGTCCATCTGCACTTTACTAC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGGTAGTAAAGTGCAGATaGACCAGGAGAGGTGCCTCG +
Preference number: 2 (lower is better)
Translates to: REEHMHRVDLWELGGLLVVVKCR*TRRGAS
Trigger: CGAGGCACCTCTCCTGGTCCATCTGCACTTTACTAC...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACGTAGTGTTGATCTCTaGTATGTGGGGTCCTTGATG +
Preference number: 2 (lower is better)
Translates to: HSPSREEHMHRVDLWELGRSVDL*YVGSLM
Trigger: CATCAAGGACCCCACATATCAGAGATCAACACTACG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR CCA 72 bp AGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTaGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGA +
Preference number: 3 (lower is better)
Translates to: RAPSAVAAGWRG*QVRGAKSNGAG
Trigger: TCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTGCTGCCAGGCCCAGCTaGGCCCTCAGTGTGCTGGCA +
Preference number: 3 (lower is better)
Translates to: AREPGTTGTVVLISDMWGAARPS*ALSVLA
Trigger: TGCCAGCACACTGAGGGCCAAGCTGGGCCTGGCAGC...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CAA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGCTGCCAGGCCCAGCTaGGCCCTCAGTGTGCTGGCA +
Preference number: 3 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWAARPS*ALSVLA
Trigger: TGCCAGCACACTGAGGGCCAAGCTGGGCCTGGCAGC...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGCTGCCAGGCCCAGCTaGGCCCTCAGTGTGCTGGCA +
Preference number: 3 (lower is better)
Translates to: RGASWEPVCALSPSVRWTAARPS*ALSVLA
Trigger: TGCCAGCACACTGAGGGCCAAGCTGGGCCTGGCAGC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR-3UTR CAA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGGCTGCCAGGCCCAGCTaGGCCCTCAGTGTGCTGGCA +
Preference number: 3 (lower is better)
Translates to: REEHMHRVDLWELGGLLVAARPS*ALSVLA
Trigger: TGCCAGCACACTGAGGGCCAAGCTGGGCCTGGCAGC...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR TCA 72 bp CCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTaGGTCCTAGTGTCAGATGGACATGGAGCTGCCAGG +
Preference number: 3 (lower is better)
Translates to: PGEVPRGNRFVL*VLVSDGHGAAR
Trigger: CCTGGCAGCTCCATGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCTCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR CCA 72 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATaGCGCTGGATGCCATTAGCCTGGATTCCACTAGGA +
Preference number: 3 (lower is better)
Translates to: VERLAGARGKVE*RWMPLAWIPLG
Trigger: TCCTAGTGGAATCCAGGCTAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR TCA 72 bp CCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTaGCCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTG +
Preference number: 3 (lower is better)
Translates to: PLSFQRRAHAQG*PLGARRAPSAV
Trigger: CACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR TCA 72 bp GGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTaGTATGTGGGGTCCTTGATGGAGTCAGTTGTCCTT +
Preference number: 3 (lower is better)
Translates to: GAWDHWHRSVDL*YVGSLMESVVL
Trigger: AAGGACAACTGACTCCATCAAGGACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
3UTR TCA 72 bp GGCACCGTAGTGTTGATCTCTGATATGTGGGGTCCTTaGTGGAGTCAGTTGTCCTTCATAGTCAGGGAAAGG +
Preference number: 3 (lower is better)
Translates to: GTVVLISDMWGP*WSQLSFIVRER
Trigger: CCTTTCCCTGACTATGAAGGACAACTGACTCCATCAAGGACCCCACATATCAGAGATCAACACTACGGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCAGCCACCGGGCCCCATaGTGTTGCAGCGGGCATTAC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGSHRAP*CCSGHY
Trigger: GTAATGCCCGCTGCAACATCATGGGGCCCGGTGGCT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCTCATGGCTGTGTGGATaGGGAAGCCACCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGSWLCG*GSHRAP
Trigger: TGGGGCCCGGTGGCTTCCCCATCCACACAGCCATGA...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCACTGTCCAGCTGGGGTaGTTCCGGATGAGGTCGGTC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGTVQLG*FRMRSV
Trigger: GACCGACCTCATCCGGAACCACCCCAGCTGGACAGT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDALGPME*AGSVAR
Trigger: CCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCCCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGPVWGC*PAALHP
Trigger: TGGATGGAGGGCTGCTGGCCAACAACCCCACACTGG...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTAGCCACCGGGCCCCATaGTGTTGCAGCGGGCATTAC +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGSHRAP*CCSGHY
Trigger: GTAATGCCCGCTGCAACATCATGGGGCCCGGTGGCT...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGTRTIS*FPILQA
Trigger: GGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCGCATCACCGCCACATaGAGGGCTGTGTTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDARITAT*RAVFPE
Trigger: CTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCTGGAGCTCTGCTGGCTaGCGGTCAGACAGTGTCCCT +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAWSSAG*RSDSVP
Trigger: AGGGACACTGTCTGACCGGCAGCCAGCAGAGCTCCA...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTCATGGCTGTGTGGATaGGGAAGCCACCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGSWLCG*GSHRAP
Trigger: TGGGGCCCGGTGGCTTCCCCATCCACACAGCCATGA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCAACTTCATGGCTGTGTaGATGGGGAAGCCACCGGGC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGNFMAV*MGKPPG
Trigger: GCCCGGTGGCTTCCCCATCCACACAGCCATGAAGTT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLGPME*AGSVAR
Trigger: CCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCTCATGGCATCCAGTGTaGGGTTGTTGGCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGSWHPV*GCWPAA
Trigger: GGCTGCTGGCCAACAACCCCACACTGGATGCCATGA...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCCACAGCCCGCCCATCTaGATCTGTGCAACAGTCCAC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGHSPPI*ICATVH
Trigger: GTGGACTGTTGCACAGATCCAGATGGGCGGGCTGTG...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCGTTCACCAGGGCGTCTaGCTCAGACTCCAGTTGGAA +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGVHQGV*LRLQLE
Trigger: TTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAAC...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCCTGCTTTCCCATCTTaGAGGCCAGGTGCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAPAFPS*RPGAVE
Trigger: CTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDATRTIS*FPILQA
Trigger: GGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGT...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCGCATCACCGCCACATaGAGGGCTGTGTTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGRITAT*RAVFPE
Trigger: CTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCGGCGTTGACCAGCACTaGATCACTGACCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAGVDQH*ITDLVQ
Trigger: CTGGACGAGGTCAGTGATGCAGTGCTGGTCAACGCC...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTGCAGCTGCAGAGCCCTaGTCCGTGGAGACCCCCTGG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGAAAEP*SVETPW
Trigger: CCAGGGGGTCTCCACGGAGCAGGGCTCTGCAGCTGC...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACCGGAAGCCGCTCTGTaGGTTCCTCGGGCTGACCAG +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLPEAAL*VPRADQ
Trigger: CTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCAGGAGCTGTAGCACCTaGGGATTGTCCCCTTGCACA +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGRSCST*GLSPCT
Trigger: TGTGCAAGGGGACAATCCCCAGGTGCTACAGCTCCT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGPVWGC*PAALHP
Trigger: TGGATGGAGGGCTGCTGGCCAACAACCCCACACTGG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCGGAGACAGCAGCAGCTaGACAAGCTTCTGGAACTCC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGGDSSS*TSFWNS
Trigger: GGAGTTCCAGAAGCTTGTCCAGCTGCTGCTGTCTCC...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTGTGGGTTCCTCGGGCTaGCCAGGACACAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGVGSSG*PGHSPR
Trigger: CCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCAC...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLMMRL*WKHSRM
Trigger: CATCCGGGAGTGCTTCCATCACAGCCGCATCATCAG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACAGAGCAGGTGGTCGTaGCTCCGCTTCTCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLQSRWS*LRFSSL
Trigger: GAGGGACGAGAAGCGGAGTCACGACCACCTGCTCTG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCTGTAACAGGATCAGCTaGCCTTCCTCCCGGACACGT +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDACNRIS*PSSRTR
Trigger: ACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTTACA...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCCTGCTTTCCCATCTTaGAGGCCAGGTGCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGPAFPS*RPGAVE
Trigger: CTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGCGTTGACCAGCACTaGATCACTGACCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGGVDQH*ITDLVQ
Trigger: CTGGACGAGGTCAGTGATGCAGTGCTGGTCAACGCC...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCCGGAAGCCGCTCTGTaGGTTCCTCGGGCTGACCAG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGPEAAL*VPRADQ
Trigger: CTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGCTCAGGATGAACGCTaGCTTCCGGGCTCGAGAGAT +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGAQDER*LPGSRD
Trigger: ATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGC...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGGATGCCCCCTGTGCTaGTTCCTGCCACCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLGCPLC*FLPPSR
Trigger: TCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCGGAGACAGCAGCAGCTaGACAAGCTTCTGGAACTCC +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAGDSSS*TSFWNS
Trigger: GGAGTTCCAGAAGCTTGTCCAGCTGCTGCTGTCTCC...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLWGGSG*GRSGAE
Trigger: TTCAGCACCTGACCGACCTCATCCGGAACCACCCCA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATCATGGAGCTCAGGATaGACGCTGGCTTCCGGGCTC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSWSSG*TLASGL
Trigger: GAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCAGAGCAGGTGGTCGTaGCTCCGCTTCTCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWQSRWS*LRFSSL
Trigger: GAGGGACGAGAAGCGGAGTCACGACCACCTGCTCTG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCTAGGTTGTTTAAGCTaGTCGCTGGGGGCTGAGTCC +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLGCLS*SLGAES
Trigger: GGACTCAGCCCCCAGCGATCAGCTTAAACAACCTAG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTCTCACTGTCACCCTTaGGGCAGGCCAGATGTAGTG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGSHCHP*GRPDVV
Trigger: CACTACATCTGGCCTGCCGCAAGGGTGACAGTGAGA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCGTAGCGAGGATCCTTaGTGTGGATCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDARSEDP*CGSGCC
Trigger: ACAGCAACCAGATCCACAGCAAGGATCCTCGCTACG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCACAGTCAAAGCGGTTaGGCATCACCGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGHSQSG*ASPPHA
Trigger: TGCATGTGGCGGTGATGCGCAACCGCTTTGACTGTG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATTCGACATGGCCAGGTaGAGTGGCGTGTTCCCGTGC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLFDMAR*SGVFPC
Trigger: GCACGGGAACACGCCACTGCACCTGGCCATGTCGAA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTCATGGCTGTGTGGATaGGGAAGCCACCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWSWLCG*GSHRAP
Trigger: TGGGGCCCGGTGGCTTCCCCATCCACACAGCCATGA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCATGGCTGTGTGGATaGGGAAGCCACCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSWLCG*GSHRAP
Trigger: TGGGGCCCGGTGGCTTCCCCATCCACACAGCCATGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCTCAGCACACCCCTTCTaGGAAAACTTCATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGSAHPF*ENFMAV
Trigger: CACAGCCATGAAGTTTTCCCAGAAGGGGTGTGCTGA...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCGAGGATCCTTGCTGTaGATCTGGTTGCTGTCCATG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDARGSLL*IWLLSM
Trigger: CATGGACAGCAACCAGATCCACAGCAAGGATCCTCG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGLGPME*AGSVAR
Trigger: CCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLPVWGC*PAALHP
Trigger: TGGATGGAGGGCTGCTGGCCAACAACCCCACACTGG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGTGGGTTCCTCGGGCTaGCCAGGACACAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTVGSSG*PGHSPR
Trigger: CCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCAC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGTGGGTTCCTCGGGCTaGCCAGGACACAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLVGSSG*PGHSPR
Trigger: CCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCAC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGAGCCACCGGGCCCCATaGTGTTGCAGCGGGCATTAC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSHRAP*CCSGHY
Trigger: GTAATGCCCGCTGCAACATCATGGGGCCCGGTGGCT...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCCTGAAGCTGCTTGCTaGTCTTGGAGGCTATCAATG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAPEAAC*SWRLSM
Trigger: CATTGATAGCCTCCAAGATCAGCAAGCAGCTTCAGG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCATGGAGCTCAGGATaGACGCTGGCTTCCGGGCTC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSWSSG*TLASGL
Trigger: GAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGCAGAGCAGGTGGTCGTaGCTCCGCTTCTCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWQSRWS*LRFSSL
Trigger: GAGGGACGAGAAGCGGAGTCACGACCACCTGCTCTG...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLTRTIS*FPILQA
Trigger: GGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGT...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCGCATCACCGCCACATaGAGGGCTGTGTTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWRITAT*RAVFPE
Trigger: CTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCGCATCACCGCCACATaGAGGGCTGTGTTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGRITAT*RAVFPE
Trigger: CTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTTCGACATGGCCAGGTaGAGTGGCGTGTTCCCGTGC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWFDMAR*SGVFPC
Trigger: GCACGGGAACACGCCACTGCACCTGGCCATGTCGAA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTGGGGTGTCCACTTCTaGCCCAAATACAATGAGGGC +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGWGVHF*PKYNEG
Trigger: GCCCTCATTGTATTTGGGGCAGAAGTGGACACCCCA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTCTGTCATCTTGGTGTaGTCCCCAAACTCCCGCTTC +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGSVILV*SPNSRF
Trigger: GAAGCGGGAGTTTGGGGAGCACACCAAGATGACAGA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAAATAGGTTGGGGCTaGCCCACTGCTCCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWEIGWG*PTAPGC
Trigger: GCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTC...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGTTTCTTCACCTTGTTaGCCTGGCCCTTGCGGATCA +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGVSSPC*PGPCGS
Trigger: TGATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAAC...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCCGGAAGCCGCTCTGTaGGTTCCTCGGGCTGACCAG +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVPEAAL*VPRADQ
Trigger: CTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCC +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGTSIWA*QYCTSS
Trigger: GGAGCTGGTACAATACTGCCACGCCCAGATGGATGT...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCTCAGTGACATCCATCTaGGCGTGGCAGTATTGTACC +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDASVTSI*AWQYCT
Trigger: GGTACAATACTGCCACGCCCAGATGGATGTCACTGA...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCGAGGATCCTTGCTGTaGATCTGGTTGCTGTCCATG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGRGSLL*IWLLSM
Trigger: CATGGACAGCAACCAGATCCACAGCAAGGATCCTCG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCGAAGAGGTCCTTGGTaGCCACTCCCGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWRRGPW*PLPRPS
Trigger: AGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGGATGCCCCCTGTGCTaGTTCCTGCCACCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWGCPLC*FLPPSR
Trigger: TCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCC...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCCTCCAAAAACAGTTTTaGCCAGTTCCCAAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGLQKQF*PVPKGC
Trigger: GCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAG...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGTGGGTTCCTCGGGCTaGCCAGGACACAGTCCCAGG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGVGSSG*PGHSPR
Trigger: CCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCAC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWWGGSG*GRSGAE
Trigger: TTCAGCACCTGACCGACCTCATCCGGAACCACCCCA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGLMMRL*WKHSRM
Trigger: CATCCGGGAGTGCTTCCATCACAGCCGCATCATCAG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAAGCCACCGGGCCCCATaGTGTTGCAGCGGGCATTAC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTSHRAP*CCSGHY
Trigger: GTAATGCCCGCTGCAACATCATGGGGCCCGGTGGCT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCAGCCACCGGGCCCCATaGTGTTGCAGCGGGCATTAC +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSHRAP*CCSGHY
Trigger: GTAATGCCCGCTGCAACATCATGGGGCCCGGTGGCT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCCTGAAGCTGCTTGCTaGTCTTGGAGGCTATCAATG +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGPEAAC*SWRLSM
Trigger: CATTGATAGCCTCCAAGATCAGCAAGCAGCTTCAGG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCAGAGCAGGTGGTCGTaGCTCCGCTTCTCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFQSRWS*LRFSSL
Trigger: GAGGGACGAGAAGCGGAGTCACGACCACCTGCTCTG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCATGGGCATGAGATCCTaGAGCTCTAGGTTGTTTAAG +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGMGMRS*SSRLFK
Trigger: CTTAAACAACCTAGAGCTTCAGGATCTCATGCCCAT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGTTCACCAGGGCGTCTaGCTCAGACTCCAGTTGGAA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLVHQGV*LRLQLE
Trigger: TTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAAC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGAGCTGGGAGGAGAACTaGTGGAAGTTCACCAGGGCG +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWSWEEN*WKFTRA
Trigger: CGCCCTGGTGAACTTCCAGCAGTTCTCCTCCCAGCT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCCTGCTTTCCCATCTTaGAGGCCAGGTGCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGPAFPS*RPGAVE
Trigger: CTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWTRTIS*FPILQA
Trigger: GGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGAAATAGGTTGGGGCTaGCCCACTGCTCCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLEIGWG*PTAPGC
Trigger: GCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGAAATAGGTTGGGGCTaGCCCACTGCTCCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFEIGWG*PTAPGC
Trigger: GCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGAAATAGGTTGGGGCTaGCCCACTGCTCCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTEIGWG*PTAPGC
Trigger: GCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCCAGTTCCCAAGGGTTaGTGGGACGAAAGACATCTA +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGPVPKG*WDERHL
Trigger: TAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGGGGGTGAGTTGCAGCTaGAGAGCCCTGCTCCGTGGA +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVGVSCS*RALLRG
Trigger: TCCACGGAGCAGGGCTCTGCAGCTGCAACTCACCCC...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACCGGAAGCCGCTCTGTaGGTTCCTCGGGCTGACCAG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGPEAAL*VPRADQ
Trigger: CTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCTCATGGCTGTGTGGATaGGGAAGCCACCGGGCCCCA +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSWLCG*GSHRAP
Trigger: TGGGGCCCGGTGGCTTCCCCATCCACACAGCCATGA...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGAACTTCATGGCTGTGTaGATGGGGAAGCCACCGGGC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWNFMAV*MGKPPG
Trigger: GCCCGGTGGCTTCCCCATCCACACAGCCATGAAGTT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCTCCTTGCTGTGGATCTaGTTGCTGTCCATGCTGATA +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDASLLWI*LLSMLI
Trigger: TATCAGCATGGACAGCAACCAGATCCACAGCAAGGA...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGG +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVLGPME*AGSVAR
Trigger: CCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLGPME*AGSVAR
Trigger: CCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTGTTATCTTTCGACATaGCCAGGTGCAGTGGCGTGT +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGCYLST*PGAVAC
Trigger: ACACGCCACTGCACCTGGCCATGTCGAAAGATAACA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGCGAAGAGGTCCTTGGTaGCCACTCCCGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWRRGPW*PLPRPS
Trigger: AGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCG...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGGATGCCCCCTGTGCTaGTTCCTGCCACCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLGCPLC*FLPPSR
Trigger: TCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCATGGCATCCAGTGTaGGGTTGTTGGCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSWHPV*GCWPAA
Trigger: GGCTGCTGGCCAACAACCCCACACTGGATGCCATGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTCATGGCATCCAGTGTaGGGTTGTTGGCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWSWHPV*GCWPAA
Trigger: GGCTGCTGGCCAACAACCCCACACTGGATGCCATGA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCATGGATTTCAGTCATaGCATCCAGTGTGGGGTTGT +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAHGFQS*HPVWGC
Trigger: ACAACCCCACACTGGATGCCATGACTGAAATCCATG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCACAGCCCGCCCATCTaGATCTGTGCAACAGTCCAC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGHSPPI*ICATVH
Trigger: GTGGACTGTTGCACAGATCCAGATGGGCGGGCTGTG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGGAGACAGCAGCAGCTaGACAAGCTTCTGGAACTCC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLGDSSS*TSFWNS
Trigger: GGAGTTCCAGAAGCTTGTCCAGCTGCTGCTGTCTCC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLWGGSG*GRSGAE
Trigger: TTCAGCACCTGACCGACCTCATCCGGAACCACCCCA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVWGGSG*GRSGAE
Trigger: TTCAGCACCTGACCGACCTCATCCGGAACCACCCCA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGCTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWLMMRL*WKHSRM
Trigger: CATCCGGGAGTGCTTCCATCACAGCCGCATCATCAG...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTAGGTCAGCAGCACCATaGCACAGTCAAAGCGGTTGC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGRSAAP*HSQSGC
Trigger: GCAACCGCTTTGACTGTGTCATGGTGCTGCTGACCT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGAGGTCAGCAGCACCATaGCACAGTCAAAGCGGTTGC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWRSAAP*HSQSGC
Trigger: GCAACCGCTTTGACTGTGTCATGGTGCTGCTGACCT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTCATGGAGCTCAGGATaGACGCTGGCTTCCGGGCTC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLSWSSG*TLASGL
Trigger: GAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACATCATGGAGCTCAGGATaGACGCTGGCTTCCGGGCTC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTSWSSG*TLASGL
Trigger: GAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGA...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACAGAGCAGGTGGTCGTaGCTCCGCTTCTCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGQSRWS*LRFSSL
Trigger: GAGGGACGAGAAGCGGAGTCACGACCACCTGCTCTG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACTGATCGCTGGGGGCTaGGTCCTGTCCAGAGAGAAG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLIAGG*VLSREK
Trigger: CTTCTCTCTGGACAGGACTCAGCCCCCAGCGATCAG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTGTAACAGGATCAGCTaGCCTTCCTCCCGGACACGT +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGCNRIS*PSSRTR
Trigger: ACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTTACA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGTTCACCAGGGCGTCTaGCTCAGACTCCAGTTGGAA +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWVHQGV*LRLQLE
Trigger: TTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAAC...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGAGCTGGGAGGAGAACTaGTGGAAGTTCACCAGGGCG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSWEEN*WKFTRA
Trigger: CGCCCTGGTGAACTTCCAGCAGTTCTCCTCCCAGCT...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGATCTTGCAGGCCAGGTaGAGTGGAGTCAGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWILQAR*SGVSPW
Trigger: CCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGAT...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTTCGACATGGCCAGGTaGAGTGGCGTGTTCCCGTGC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLFDMAR*SGVFPC
Trigger: GCACGGGAACACGCCACTGCACCTGGCCATGTCGAA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATCTGTCATCTTGGTGTaGTCCCCAAACTCCCGCTTC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSVILV*SPNSRF
Trigger: GAAGCGGGAGTTTGGGGAGCACACCAAGATGACAGA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTGGAGCTCTGCTGGCTaGCGGTCAGACAGTGTCCCT +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLWSSAG*RSDSVP
Trigger: AGGGACACTGTCTGACCGGCAGCCAGCAGAGCTCCA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCTGGAGCTCTGCTGGCTaGCGGTCAGACAGTGTCCCT +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFWSSAG*RSDSVP
Trigger: AGGGACACTGTCTGACCGGCAGCCAGCAGAGCTCCA...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGTTTCTTCACCTTGTTaGCCTGGCCCTTGCGGATCA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLVSSPC*PGPCGS
Trigger: TGATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAAC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGAAGAGGGGGTGAGTTaGAGCTGCAGAGCCCTGCTC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTEEGVS*SCRALL
Trigger: GAGCAGGGCTCTGCAGCTGCAACTCACCCCCTCTTC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGACTGTCCAGCTGGGGTaGTTCCGGATGAGGTCGGTC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLTVQLG*FRMRSV
Trigger: GACCGACCTCATCCGGAACCACCCCAGCTGGACAGT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAACTGTCCAGCTGGGGTaGTTCCGGATGAGGTCGGTC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTTVQLG*FRMRSV
Trigger: GACCGACCTCATCCGGAACCACCCCAGCTGGACAGT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLTSIWA*QYCTSS
Trigger: GGAGCTGGTACAATACTGCCACGCCCAGATGGATGT...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTAGGAGCTGTAGCACCTaGGGATTGTCCCCTTGCACA +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGRSCST*GLSPCT
Trigger: TGTGCAAGGGGACAATCCCCAGGTGCTACAGCTCCT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGAACTTCATGGCTGTGTaGATGGGGAAGCCACCGGGC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWNFMAV*MGKPPG
Trigger: GCCCGGTGGCTTCCCCATCCACACAGCCATGAAGTT...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACGAGGATCCTTGCTGTaGATCTGGTTGCTGTCCATG +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLRGSLL*IWLLSM
Trigger: CATGGACAGCAACCAGATCCACAGCAAGGATCCTCG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGCTCAGGATGAACGCTaGCTTCCGGGCTCGAGAGAT +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWAQDER*LPGSRD
Trigger: ATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGC...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACGAAGAGGTCCTTGGTaGCCACTCCCGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTRRGPW*PLPRPS
Trigger: AGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGAAGAGGTCCTTGGTaGCCACTCCCGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVRRGPW*PLPRPS
Trigger: AGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCGGATGCCCCCTGTGCTaGTTCCTGCCACCCAGTCGA +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCGCPLC*FLPPSR
Trigger: TCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCC...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTATTTACTGTGCAGAATaGCCAGGGCCAGGATGCCCC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGIYCAE*PGPGCP
Trigger: GGGGCATCCTGGCCCTGGCCATTCTGCACAGTAAAT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFPVWGC*PAALHP
Trigger: TGGATGGAGGGCTGCTGGCCAACAACCCCACACTGG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGCCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLPVWGC*PAALHP
Trigger: TGGATGGAGGGCTGCTGGCCAACAACCCCACACTGG...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCATGGCATCCAGTGTaGGGTTGTTGGCCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSWHPV*GCWPAA
Trigger: GGCTGCTGGCCAACAACCCCACACTGGATGCCATGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTCATGGATTTCAGTCATaGCATCCAGTGTGGGGTTGT +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGHGFQS*HPVWGC
Trigger: ACAACCCCACACTGGATGCCATGACTGAAATCCATG...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCCCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGPEKRL*RVSSPC
Trigger: ACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGG...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCTCTTGCCCAGTTCCTTaGCTCCAAAAACAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDASCPVP*LQKQFW
Trigger: CCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGA...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAAGGTCGGTCAGGTGCTaGAGCACCTCCACATGCAGG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGRSVRC*STSTCR
Trigger: CCTGCATGTGGAGGTGCTTCAGCACCTGACCGACCT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAA +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGWGGSG*GRSGAE
Trigger: TTCAGCACCTGACCGACCTCATCCGGAACCACCCCA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLMMRL*WKHSRM
Trigger: CATCCGGGAGTGCTTCCATCACAGCCGCATCATCAG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCTTGCGGATCATGTCCTaGTTGTACTCATGGATTTCA +
Preference number: 4 (lower is better)
Translates to: QGGEAGRCEGQSRMALDALRIMS*LYSWIS
Trigger: TGAAATCCATGAGTACAATCAGGACATGATCCGCAA...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTGTAACAGGATCAGCTaGCCTTCCTCCCGGACACGT +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWCNRIS*PSSRTR
Trigger: ACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTTACA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGGACACAGTCCCAGGTaGGATTGGAGACATTCTGTA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLGHSPR*DWRHSV
Trigger: TACAGAATGTCTCCAATCGCACCTGGGACTGTGTCC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGAGCTGGGAGGAGAACTaGTGGAAGTTCACCAGGGCG +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLSWEEN*WKFTRA
Trigger: CGCCCTGGTGAACTTCCAGCAGTTCTCCTCCCAGCT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCTCACTGTCACCCTTaGGGCAGGCCAGATGTAGTG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSHCHP*GRPDVV
Trigger: CACTACATCTGGCCTGCCGCAAGGGTGACAGTGAGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCATCTTGCAGGCCAGGTaGAGTGGAGTCAGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFILQAR*SGVSPW
Trigger: CCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGAT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGATCTTGCAGGCCAGGTaGAGTGGAGTCAGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLILQAR*SGVSPW
Trigger: CCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGAT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAATCTTGCAGGCCAGGTaGAGTGGAGTCAGCCCTTGG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTILQAR*SGVSPW
Trigger: CCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGAT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCCTGCTTTCCCATCTTaGAGGCCAGGTGCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFPAFPS*RPGAVE
Trigger: CTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCGTAGCGAGGATCCTTaGTGTGGATCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGRSEDP*CGSGCC
Trigger: ACAGCAACCAGATCCACAGCAAGGATCCTCGCTACG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATTCGACATGGCCAGGTaGAGTGGCGTGTTCCCGTGC +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGFDMAR*SGVFPC
Trigger: GCACGGGAACACGCCACTGCACCTGGCCATGTCGAA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLLGGYQ*RSLPKV
Trigger: GACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGTTTCTTCACCTTGTTaGCCTGGCCCTTGCGGATCA +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWVSSPC*PGPCGS
Trigger: TGATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAAC...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGAGTCCACGACCATCTTaGCCAGTTCCTTGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWSPRPS*PVPWLQ
Trigger: TTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGGCGTTGACCAGCACTaGATCACTGACCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLGVDQH*ITDLVQ
Trigger: CTGGACGAGGTCAGTGATGCAGTGCTGGTCAACGCC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCACTGTCCAGCTGGGGTaGTTCCGGATGAGGTCGGTC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCTVQLG*FRMRSV
Trigger: GACCGACCTCATCCGGAACCACCCCAGCTGGACAGT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGTSIWA*QYCTSS
Trigger: GGAGCTGGTACAATACTGCCACGCCCAGATGGATGT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATCAGTGACATCCATCTaGGCGTGGCAGTATTGTACC +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSVTSI*AWQYCT
Trigger: GGTACAATACTGCCACGCCCAGATGGATGTCACTGA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAAGTGGAGTCAGCCCTTaGTTGTTTACCTGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSGVSP*LFTWFR
Trigger: CCTGAACCAGGTAAACAACCAAGGGCTGACTCCACT...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGCAGGCCAGGTGCAGTaGAGTCAGCCCTTGGTTGTT +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFAGQVQ*SQPLVV
Trigger: AACAACCAAGGGCTGACTCCACTGCACCTGGCCTGC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGCAGGCCAGGTGCAGTaGAGTCAGCCCTTGGTTGTT +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLAGQVQ*SQPLVV
Trigger: AACAACCAAGGGCTGACTCCACTGCACCTGGCCTGC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGAACTTCATGGCTGTGTaGATGGGGAAGCCACCGGGC +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVNFMAV*MGKPPG
Trigger: GCCCGGTGGCTTCCCCATCCACACAGCCATGAAGTT...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAAACTTCATGGCTGTGTaGATGGGGAAGCCACCGGGC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTNFMAV*MGKPPG
Trigger: GCCCGGTGGCTTCCCCATCCACACAGCCATGAAGTT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATCAGCACACCCCTTCTaGGAAAACTTCATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSAHPF*ENFMAV
Trigger: CACAGCCATGAAGTTTTCCCAGAAGGGGTGTGCTGA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATGTTATCTTTCGACATaGCCAGGTGCAGTGGCGTGT +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLCYLST*PGAVAC
Trigger: ACACGCCACTGCACCTGGCCATGTCGAAAGATAACA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGCTCAGGATGAACGCTaGCTTCCGGGCTCGAGAGAT +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLAQDER*LPGSRD
Trigger: ATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACGAAGAGGTCCTTGGTaGCCACTCCCGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGRRGPW*PLPRPS
Trigger: AGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGCACAGCCCGCCCATCTaGATCTGTGCAACAGTCCAC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLHSPPI*ICATVH
Trigger: GTGGACTGTTGCACAGATCCAGATGGGCGGGCTGTG...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATG +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCLMMRL*WKHSRM
Trigger: CATCCGGGAGTGCTTCCATCACAGCCGCATCATCAG...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCAGGTCAGCAGCACCATaGCACAGTCAAAGCGGTTGC +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFRSAAP*HSQSGC
Trigger: GCAACCGCTTTGACTGTGTCATGGTGCTGCTGACCT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCCTGAAGCTGCTTGCTaGTCTTGGAGGCTATCAATG +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWPEAAC*SWRLSM
Trigger: CATTGATAGCCTCCAAGATCAGCAAGCAGCTTCAGG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTTGCGGATCATGTCCTaGTTGTACTCATGGATTTCA +
Preference number: 4 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLRIMS*LYSWIS
Trigger: TGAAATCCATGAGTACAATCAGGACATGATCCGCAA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTGTAACAGGATCAGCTaGCCTTCCTCCCGGACACGT +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVCNRIS*PSSRTR
Trigger: ACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTTACA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTGGACACAGTCCCAGGTaGGATTGGAGACATTCTGTA +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGGHSPR*DWRHSV
Trigger: TACAGAATGTCTCCAATCGCACCTGGGACTGTGTCC...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGTTCACCAGGGCGTCTaGCTCAGACTCCAGTTGGAA +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTVHQGV*LRLQLE
Trigger: TTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAAC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGGTTCACCAGGGCGTCTaGCTCAGACTCCAGTTGGAA +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVVHQGV*LRLQLE
Trigger: TTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAAC...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCAGCTGGGAGGAGAACTaGTGGAAGTTCACCAGGGCG +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSWEEN*WKFTRA
Trigger: CGCCCTGGTGAACTTCCAGCAGTTCTCCTCCCAGCT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACCTGCTTTCCCATCTTaGAGGCCAGGTGCAGTGGAG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGPAFPS*RPGAVE
Trigger: CTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCTRTIS*FPILQA
Trigger: GGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCACAGTCAAAGCGGTTaGGCATCACCGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVHSQSG*ASPPHA
Trigger: TGCATGTGGCGGTGATGCGCAACCGCTTTGACTGTG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACACAGTCAAAGCGGTTaGGCATCACCGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTHSQSG*ASPPHA
Trigger: TGCATGTGGCGGTGATGCGCAACCGCTTTGACTGTG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGLGGYQ*RSLPKV
Trigger: GACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCTGTCATCTTGGTGTaGTCCCCAAACTCCCGCTTC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSVILV*SPNSRF
Trigger: GAAGCGGGAGTTTGGGGAGCACACCAAGATGACAGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCGGCGTTGACCAGCACTaGATCACTGACCTCGTCCAG +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCGVDQH*ITDLVQ
Trigger: CTGGACGAGGTCAGTGATGCAGTGCTGGTCAACGCC...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCTCCTTCACCCGGAATaGGTTCGAGAACAAGTTGGT +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWLLHPE*VREQVG
Trigger: ACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCTCCTTCACCCGGAATaGGTTCGAGAACAAGTTGGT +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGLLHPE*VREQVG
Trigger: ACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCAGTGACATCCATCTaGGCGTGGCAGTATTGTACC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSVTSI*AWQYCT
Trigger: GGTACAATACTGCCACGCCCAGATGGATGTCACTGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGAGGAGCTGTAGCACCTaGGGATTGTCCCCTTGCACA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLRSCST*GLSPCT
Trigger: TGTGCAAGGGGACAATCCCCAGGTGCTACAGCTCCT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCGCAGGCCAGGTGCAGTaGAGTCAGCCCTTGGTTGTT +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCAGQVQ*SQPLVV
Trigger: AACAACCAAGGGCTGACTCCACTGCACCTGGCCTGC...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGCAGGCCAGGTGCAGTaGAGTCAGCCCTTGGTTGTT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGAGQVQ*SQPLVV
Trigger: AACAACCAAGGGCTGACTCCACTGCACCTGGCCTGC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTCTGGGAAAACTTCATaGCTGTGTGGATGGGGAAGC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWSGKTS*LCGWGS
Trigger: GCTTCCCCATCCACACAGCCATGAAGTTTTCCCAGA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCTGGGAAAACTTCATaGCTGTGTGGATGGGGAAGC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSGKTS*LCGWGS
Trigger: GCTTCCCCATCCACACAGCCATGAAGTTTTCCCAGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCAGCACACCCCTTCTaGGAAAACTTCATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSAHPF*ENFMAV
Trigger: CACAGCCATGAAGTTTTCCCAGAAGGGGTGTGCTGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGCTCAGGATGAACGCTaGCTTCCGGGCTCGAGAGAT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGAQDER*LPGSRD
Trigger: ATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAATTTACTGTGCAGAATaGCCAGGGCCAGGATGCCCC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTIYCAE*PGPGCP
Trigger: GGGGCATCCTGGCCCTGGCCATTCTGCACAGTAAAT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGATTTACTGTGCAGAATaGCCAGGGCCAGGATGCCCC +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVIYCAE*PGPGCP
Trigger: GGGGCATCCTGGCCCTGGCCATTCTGCACAGTAAAT...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACACAGCCCGCCCATCTaGATCTGTGCAACAGTCCAC +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGHSPPI*ICATVH
Trigger: GTGGACTGTTGCACAGATCCAGATGGGCGGGCTGTG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGGGAGACAGCAGCAGCTaGACAAGCTTCTGGAACTCC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLGDSSS*TSFWNS
Trigger: GGAGTTCCAGAAGCTTGTCCAGCTGCTGCTGTCTCC...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACATGGATGATTGGAAAGTaGTGGTCGGCCCCCACCGTT +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTWMIGK*WSAPTV
Trigger: AACGGTGGGGGCCGACCACCACTTTCCAATCATCCA...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTCCGTGGAGACCCCCTaGATGATTGGAAAGTGGTGG +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLSVETP*MIGKWW
Trigger: CCACCACTTTCCAATCATCCAGGGGGTCTCCACGGA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCAGGTCAGCAGCACCATaGCACAGTCAAAGCGGTTGC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCRSAAP*HSQSGC
Trigger: GCAACCGCTTTGACTGTGTCATGGTGCTGCTGACCT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGATGGGCATGAGATCCTaGAGCTGCTTGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWMGMRS*SCLLIL
Trigger: CAAGATCAGCAAGCAGCTTCAGGATCTCATGCCCAT...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATGTAACAGGATCAGCTaGCCTTCCTCCCGGACACGT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGCNRIS*PSSRTR
Trigger: ACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTTACA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGGACACAGTCCCAGGTaGGATTGGAGACATTCTGTA +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWGHSPR*DWRHSV
Trigger: TACAGAATGTCTCCAATCGCACCTGGGACTGTGTCC...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATCTCACTGTCACCCTTaGGGCAGGCCAGATGTAGTG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGSHCHP*GRPDVV
Trigger: CACTACATCTGGCCTGCCGCAAGGGTGACAGTGAGA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACGTAGCGAGGATCCTTaGTGTGGATCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTRSEDP*CGSGCC
Trigger: ACAGCAACCAGATCCACAGCAAGGATCCTCGCTACG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACACAGTCAAAGCGGTTaGGCATCACCGCCACATGCA +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGHSQSG*ASPPHA
Trigger: TGCATGTGGCGGTGATGCGCAACCGCTTTGACTGTG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTGGGGTGTCCACTTCTaGCCCAAATACAATGAGGGC +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVWGVHF*PKYNEG
Trigger: GCCCTCATTGTATTTGGGGCAGAAGTGGACACCCCA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCTGGGGTGTCCACTTCTaGCCCAAATACAATGAGGGC +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFWGVHF*PKYNEG
Trigger: GCCCTCATTGTATTTGGGGCAGAAGTGGACACCCCA...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGTTTCTTCACCTTGTTaGCCTGGCCCTTGCGGATCA +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTVSSPC*PGPCGS
Trigger: TGATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAAC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGAGTCCACGACCATCTTaGCCAGTTCCTTGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLSPRPS*PVPWLQ
Trigger: TTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGAGTCCACGACCATCTTaGCCAGTTCCTTGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVSPRPS*PVPWLQ
Trigger: TTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACT...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCAGTCCACGACCATCTTaGCCAGTTCCTTGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSPRPS*PVPWLQ
Trigger: TTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLTSIWA*QYCTSS
Trigger: GGAGCTGGTACAATACTGCCACGCCCAGATGGATGT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTTSIWA*QYCTSS
Trigger: GGAGCTGGTACAATACTGCCACGCCCAGATGGATGT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCAGTGACATCCATCTaGGCGTGGCAGTATTGTACC +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSVTSI*AWQYCT
Trigger: GGTACAATACTGCCACGCCCAGATGGATGTCACTGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAAGGAGCTGTAGCACCTaGGGATTGTCCCCTTGCACA +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGRSCST*GLSPCT
Trigger: TGTGCAAGGGGACAATCCCCAGGTGCTACAGCTCCT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCAGCACACCCCTTCTaGGAAAACTTCATGGCTGTG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSAHPF*ENFMAV
Trigger: CACAGCCATGAAGTTTTCCCAGAAGGGGTGTGCTGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGCGAGGATCCTTGCTGTaGATCTGGTTGCTGTCCATG +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLRGSLL*IWLLSM
Trigger: CATGGACAGCAACCAGATCCACAGCAAGGATCCTCG...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACGAGGATCCTTGCTGTaGATCTGGTTGCTGTCCATG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTRGSLL*IWLLSM
Trigger: CATGGACAGCAACCAGATCCACAGCAAGGATCCTCG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTATGGCGATGAGAAGCTaGATAATGACCAGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGMAMRS*IMTRPF
Trigger: GAAAGGCCTGGTCATTATCCAGCTTCTCATCGCCAT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGATGGCGATGAGAAGCTaGATAATGACCAGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWMAMRS*IMTRPF
Trigger: GAAAGGCCTGGTCATTATCCAGCTTCTCATCGCCAT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCATTTACTGTGCAGAATaGCCAGGGCCAGGATGCCCC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCIYCAE*PGPGCP
Trigger: GGGGCATCCTGGCCCTGGCCATTCTGCACAGTAAAT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCATGGATTTCAGTCATaGCATCCAGTGTGGGGTTGT +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGHGFQS*HPVWGC
Trigger: ACAACCCCACACTGGATGCCATGACTGAAATCCATG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCTCCAAAAACAGTTTTaGCCAGTTCCCAAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWLQKQF*PVPKGC
Trigger: GCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCATGGGCATGAGATCCTaGAGCTGCTTGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFMGMRS*SCLLIL
Trigger: CAAGATCAGCAAGCAGCTTCAGGATCTCATGCCCAT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGATGGGCATGAGATCCTaGAGCTGCTTGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVMGMRS*SCLLIL
Trigger: CAAGATCAGCAAGCAGCTTCAGGATCTCATGCCCAT...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAATGGGCATGAGATCCTaGAGCTGCTTGCTGATCTTG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTMGMRS*SCLLIL
Trigger: CAAGATCAGCAAGCAGCTTCAGGATCTCATGCCCAT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATTGCGGATCATGTCCTaGTTGTACTCATGGATTTCA +
Preference number: 4 (lower is better)
Translates to: VERLAGARGKVEWRWMPLLRIMS*LYSWIS
Trigger: TGAAATCCATGAGTACAATCAGGACATGATCCGCAA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGGACACAGTCCCAGGTaGGATTGGAGACATTCTGTA +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFGHSPR*DWRHSV
Trigger: TACAGAATGTCTCCAATCGCACCTGGGACTGTGTCC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACGTAGCGAGGATCCTTaGTGTGGATCTGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGRSEDP*CGSGCC
Trigger: ACAGCAACCAGATCCACAGCAAGGATCCTCGCTACG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCTGGGGTGTCCACTTCTaGCCCAAATACAATGAGGGC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCWGVHF*PKYNEG
Trigger: GCCCTCATTGTATTTGGGGCAGAAGTGGACACCCCA...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATGGGGTGTCCACTTCTaGCCCAAATACAATGAGGGC +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGWGVHF*PKYNEG
Trigger: GCCCTCATTGTATTTGGGGCAGAAGTGGACACCCCA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVLGGYQ*RSLPKV
Trigger: GACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLGGYQ*RSLPKV
Trigger: GACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATCTGTCATCTTGGTGTaGTCCCCAAACTCCCGCTTC +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGSVILV*SPNSRF
Trigger: GAAGCGGGAGTTTGGGGAGCACACCAAGATGACAGA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCTCTGTCATCTTGGTGTaGTCCCCAAACTCCCGCTTC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSVILV*SPNSRF
Trigger: GAAGCGGGAGTTTGGGGAGCACACCAAGATGACAGA...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGTTTCTTCACCTTGTTaGCCTGGCCCTTGCGGATCA +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGVSSPC*PGPCGS
Trigger: TGATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAAC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGCCAGTTCCCAAGGGTTaGTGGGACGAAAGACATCTA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLPVPKG*WDERHL
Trigger: TAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGG...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCCAGTTCCCAAGGGTTaGTGGGACGAAAGACATCTA +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFPVPKG*WDERHL
Trigger: TAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCAGTCCACGACCATCTTaGCCAGTTCCTTGGCTCCAA +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSPRPS*PVPWLQ
Trigger: TTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACTCCTTCACCCGGAATaGGTTCGAGAACAAGTTGGT +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLLHPE*VREQVG
Trigger: ACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAAGTGGAGTCAGCCCTTaGTTGTTTACCTGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTSGVSP*LFTWFR
Trigger: CCTGAACCAGGTAAACAACCAAGGGCTGACTCCACT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCAGTGGAGTCAGCCCTTaGTTGTTTACCTGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSGVSP*LFTWFR
Trigger: CCTGAACCAGGTAAACAACCAAGGGCTGACTCCACT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCTCTGGGAAAACTTCATaGCTGTGTGGATGGGGAAGC +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSGKTS*LCGWGS
Trigger: GCTTCCCCATCCACACAGCCATGAAGTTTTCCCAGA...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTGTTATCTTTCGACATaGCCAGGTGCAGTGGCGTGT +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVCYLST*PGAVAC
Trigger: ACACGCCACTGCACCTGGCCATGTCGAAAGATAACA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACATTCAGTCTGAAGTACTaGATGCCGACCATCTCGCAC +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTFSLKY*MPTISH
Trigger: GTGCGAGATGGTCGGCATCCAGTACTTCAGACTGAA...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTTCAGTCTGAAGTACTaGATGCCGACCATCTCGCAC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLFSLKY*MPTISH
Trigger: GTGCGAGATGGTCGGCATCCAGTACTTCAGACTGAA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTTCAGTCTGAAGTACTaGATGCCGACCATCTCGCAC +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVFSLKY*MPTISH
Trigger: GTGCGAGATGGTCGGCATCCAGTACTTCAGACTGAA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACCTGAAGCTGCTTGCTaGTCTTGGAGGCTATCAATG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGPEAAC*SWRLSM
Trigger: CATTGATAGCCTCCAAGATCAGCAAGCAGCTTCAGG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR TCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTTGCGGATCATGTCCTaGTTGTACTCATGGATTTCA +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWLRIMS*LYSWIS
Trigger: TGAAATCCATGAGTACAATCAGGACATGATCCGCAA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR GCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCGGACACAGTCCCAGGTaGGATTGGAGACATTCTGTA +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCGHSPR*DWRHSV
Trigger: TACAGAATGTCTCCAATCGCACCTGGGACTGTGTCC...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCCTTCACCCGGAATaGGTTCGAGAACAAGTTGGT +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCLLHPE*VREQVG
Trigger: ACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAG...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACTCCTTCACCCGGAATaGGTTCGAGAACAAGTTGGT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGLLHPE*VREQVG
Trigger: ACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAAGTGGAGTCAGCCCTTaGTTGTTTACCTGGTTCAGG +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGSGVSP*LFTWFR
Trigger: CCTGAACCAGGTAAACAACCAAGGGCTGACTCCACT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCTCTGGGAAAACTTCATaGCTGTGTGGATGGGGAAGC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSGKTS*LCGWGS
Trigger: GCTTCCCCATCCACACAGCCATGAAGTTTTCCCAGA...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGTCCTTGCTGTGGATCTaGTTGCTGTCCATGCTGATA +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLSLLWI*LLSMLI
Trigger: TATCAGCATGGACAGCAACCAGATCCACAGCAAGGA...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGATGGCGATGAGAAGCTaGATAATGACCAGGCCTTTC +
Preference number: 4 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLMAMRS*IMTRPF
Trigger: GAAAGGCCTGGTCATTATCCAGCTTCTCATCGCCAT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCATGGATTTCAGTCATaGCATCCAGTGTGGGGTTGT +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFHGFQS*HPVWGC
Trigger: ACAACCCCACACTGGATGCCATGACTGAAATCCATG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: APPHSPSREEHMHRVDLWPEKRL*RVSSPC
Trigger: ACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: AREPGTTGTVVLISDMWGPEKRL*RVSSPC
Trigger: ACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCTCCAAAAACAGTTTTaGCCAGTTCCCAAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVLQKQF*PVPKGC
Trigger: GCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCTTGCCCAGTTCCTTaGCTCCAAAAACAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSCPVP*LQKQFW
Trigger: CCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCTCCTTGCTGTGGATCTaGTTGCTGTCCATGCTGATA +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSLLWI*LLSMLI
Trigger: TATCAGCATGGACAGCAACCAGATCCACAGCAAGGA...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCCAAAAACAGTTTTaGCCAGTTCCCAAGGGTTGC +
Preference number: 4 (lower is better)
Translates to: NSGLSASSSKVQMDQERCLQKQF*PVPKGC
Trigger: GCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAG...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTCTTGCCCAGTTCCTTaGCTCCAAAAACAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: REEHMHRVDLWELGGLLVSCPVP*LQKQFW
Trigger: CCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCTCTTGCCCAGTTCCTTaGCTCCAAAAACAGTTTTGG +
Preference number: 4 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSCPVP*LQKQFW
Trigger: CCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGA...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: RGASWEPVCALSPSVRWTPEKRL*RVSSPC
Trigger: ACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR TCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATTGCGGATCATGTCCTaGTTGTACTCATGGATTTCA +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGLRIMS*LYSWIS
Trigger: TGAAATCCATGAGTACAATCAGGACATGATCCGCAA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CCA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGT +
Preference number: 4 (lower is better)
Translates to: HSPSREEHMHRVDLWELGPEKRL*RVSSPC
Trigger: ACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCGCATCCAGTGTGGGGTaGTTGGCCAGCAGCCCTCCA +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGASSVG*LASSPP
Trigger: TGGAGGGCTGCTGGCCAACAACCCCACACTGGATGC...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCGCATCCAGTGTGGGGTaGTTGGCCAGCAGCCCTCCA +
Preference number: 5 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAASSVG*LASSPP
Trigger: TGGAGGGCTGCTGGCCAACAACCCCACACTGGATGC...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp CCCTCCATCCAGGAAGCGTCCATTGGGCCGGAAATAGGTTGGGGCTaGCCCACTGCTCCGGGCTGCACGCCATACCAGTTGGTCTGCAGG +
Preference number: 5 (lower is better)
Translates to: PSIQEASIGPEIGWG*PTAPGCTPYQLVCR
Trigger: CCTGCAGACCAACTGGTATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTGGATGGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp CAGCAGCCCTCCATCCAGGAAGCGTCCATTGGGCCGGAAATAGGTTaGGGCTGCCCCACTGCTCCGGGCTGCACGCCATACCAGTTGGTC +
Preference number: 5 (lower is better)
Translates to: QQPSIQEASIGPEIG*GCPTAPGCTPYQLV
Trigger: GACCAACTGGTATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTGGATGGAGGGCTGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCCTGGGCGTGGCAGTATaGTACCAGCTCCACCAGGAT +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGLGVAV*YQLHQD
Trigger: ATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAG...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCACACAGTCAAAGCGGTaGCGCATCACCGCCACATGC +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGTQSKR*RITATC
Trigger: GCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCTCTCCCCAAAGTCGTTaGGGGTGTCCACTTCTGCCC +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGSPQSR*GCPLLP
Trigger: GGGCAGAAGTGGACACCCCAAACGACTTTGGGGAGA...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp CATGGCCAGGTGCAGTGGCGTGTTCCCGTGCTCTCCGCGGGCACCTaGATTAGCCCCGTAGGTCAGCAGCACCATGACACAGTCAAAGCG +
Preference number: 5 (lower is better)
Translates to: HGQVQWRVPVLSAGT*ISPVGQQHHDTVKA
Trigger: CGCTTTGACTGTGTCATGGTGCTGCTGACCTACGGGGCTAATGCAGGTGCCCGCGGAGAGCACGGGAACACGCCACTGCACCTGGCCATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp GGCGTCTGCCTCAGACTCCAGTTGGAAGAGCCGGAAGCCGCTCTGTaGGTTCCTCGGGCTGACCAGGACACAGTCCCAGGTGCGATTGGA +
Preference number: 5 (lower is better)
Translates to: GVCLRLQLEEPEAAL*VPRADQDTVPGAIG
Trigger: TCCAATCGCACCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGGCTCTTCCAACTGGAGTCTGAGGCAGACGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCATCTCACTGTCACCCTaGCGGCAGGCCAGATGTAGT +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGISLSP*RQARCS
Trigger: ACTACATCTGGCCTGCCGCAAGGGTGACAGTGAGAT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCCTGGGCGTGGCAGTATaGTACCAGCTCCACCAGGAT +
Preference number: 5 (lower is better)
Translates to: QGGEAGRCEGQSRMALDALGVAV*YQLHQD
Trigger: ATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAG...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCAGTTTCTTCACCTTGTaGCCCTGGCCCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGSFFTL*PWPLRI
Trigger: GATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAACT...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCGCCAGTTCCCAAGGGTaGCTGGGACGAAAGACATCT +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGASSQG*LGRKTS
Trigger: AGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGC...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 90 bp GCTCCACGGCTAGGTGTGTCACTGTCCAGCTGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAAGCACCTCCACATGCAGGACCTGCA +
Preference number: 5 (lower is better)
Translates to: APRLGVSLSSWGGSG*GRSGAEAPPHAGPA
Trigger: TGCAGGTCCTGCATGTGGAGGTGCTTCAGCACCTGACCGACCTCATCCGGAACCACCCCAGCTGGACAGTGACACACCTAGCCGTGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 90 bp GAGAACTGCTGGAAGTTCACCAGGGCGTCTGCCTCAGACTCCAGTTaGAAGAGCCGGAAGCCGCTCTGTGGGTTCCTCGGGCTGACCAGG +
Preference number: 5 (lower is better)
Translates to: ENCWKFTRASASDSS*KSRKPLCGFLGLTR
Trigger: CCTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGGCTCTTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAACTTCCAGCAGTTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 90 bp TCCTTGGTGGCCACTCCCGAGGCCTTCTCGATGGCGATGAGAAGCTaGATAATGACCAGGCCTTTCACGCCCCCTCCGTCCAGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: SLVATPEAFSMAMRS*IMTRPFTPPPSRQS
Trigger: GCTCTGCCTGGACGGAGGGGGCGTGAAAGGCCTGGTCATTATCCAGCTTCTCATCGCCATCGAGAAGGCCTCGGGAGTGGCCACCAAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCCAGTGGAGTCAGCCCTaGGTTGTTTACCTGGTTCAG +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGQWSQP*VVYLVQ
Trigger: CTGAACCAGGTAAACAACCAAGGGCTGACTCCACTG...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTACACAGTCAAAGCGGTaGCGCATCACCGCCACATGC +
Preference number: 5 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGTQSKR*RITATC
Trigger: GCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGT...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTGGGCCGGAAATAGGTaGGGGCTGCCCCACTGCTCC +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGWAGNR*GLPHCS
Trigger: GGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGCATCCAGTGTGGGGTaGTTGGCCAGCAGCCCTCCA +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLASSVG*LASSPP
Trigger: TGGAGGGCTGCTGGCCAACAACCCCACACTGGATGC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGAGAGTTTCTTCACCTaGTTGCCCTGGCCCTTGCGG +
Preference number: 5 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGESFFT*LPWPLR
Trigger: CCGCAAGGGCCAGGGCAACAAGGTGAAGAAACTCTC...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 90 bp CTCCCGCTTCAGGAACTCCTCCAGGGGCCCAGACTCATAGGGCCGTaGGCCCCGAAACACCTCGTCCTTCATACGGAAGTACACACCACG +
Preference number: 5 (lower is better)
Translates to: LPLQELLQGPRLIGP*APKHLVLHTEVHTT
Trigger: CGTGGTGTGTACTTCCGTATGAAGGACGAGGTGTTTCGGGGCTCACGGCCCTATGAGTCTGGGCCCCTGGAGGAGTTCCTGAAGCGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp GCAGCATTCGGGCCATCTCGGCGTTCTTGGCCCAATGGAGTGGGCTaGCTCCGTAGCGAGGATCCTTGCTGTGGATCTGGTTGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: AAFGPSRRSWPNGVG*LRSEDPCCGSGCCP
Trigger: TGGACAGCAACCAGATCCACAGCAAGGATCCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAGAACGCCGAGATGGCCCGAATGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTGGGCCGGAAATAGGTaGGGGCTGCCCCACTGCTCC +
Preference number: 5 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWWAGNR*GLPHCS
Trigger: GGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 90 bp CCCTCCTCATTCTCTGTGCTGTTGGCACAGCTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATGCCGAGCTCCACGGCTAGGTGTGTC +
Preference number: 5 (lower is better)
Translates to: PSSFSVLLAQLMMRL*WKHSRMPSSTARCV
Trigger: GACACACCTAGCCGTGGAGCTCGGCATCCGGGAGTGCTTCCATCACAGCCGCATCATCAGCTGTGCCAACAGCACAGAGAATGAGGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS GCA 90 bp AGCAGGACGCGCACCATCTCCTGCTTTCCCATCTTGCAGGCCAGGTaGAGTGGAGTCAGCCCTTGGTTGTTTACCTGGTTCAGGCCGGCT +
Preference number: 5 (lower is better)
Translates to: SRTRTISCFPILQAR*SGVSPWLFTWFRPA
Trigger: AGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGTCCTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp ATGTTGCAGCGGGCATTACAGAGCAGCAGGACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCCAGGTGCAGTGGAGTCAGCCCTTGG +
Preference number: 5 (lower is better)
Translates to: MLQRALQSSRTRTIS*FPILQARCSGVSPW
Trigger: CCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGTCCTGCTGCTCTGTAATGCCCGCTGCAACAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp CTTCAGCAGCATTCGGGCCATCTCGGCGTTCTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGGATCCTTGCTGTGGATCTGGTTGCT +
Preference number: 5 (lower is better)
Translates to: LQQHSGHLGVLGPME*AGSVARILAVDLVA
Trigger: AGCAACCAGATCCACAGCAAGGATCCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAGAACGCCGAGATGGCCCGAATGCTGCTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATCCTGCTTTCCCATCTaGCAGGCCAGGTGCAGTGGA +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSCFPI*QARCSG
Trigger: TCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTGGAGAGGCTGGCTTGCTGTGGATCTGGTaGCTGTCCATGCTGATAATC +
Preference number: 5 (lower is better)
Translates to: LWELGGLLVRWRQGGEAGLLWIW*LSMLII
Trigger: GATTATCAGCATGGACAGCAACCAGATCCACAGCAA...GCCAGCCTCTCCACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTGGGCCGGAAATAGGTaGGGGCTGCCCCACTGCTCC +
Preference number: 5 (lower is better)
Translates to: REEHMHRVDLWELGGLLVWAGNR*GLPHCS
Trigger: GGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAAPKTV*ASSQGL
Trigger: CAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGC...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp AGCAGCACCATGACACAGTCAAAGCGGTTGCGCATCACCGCCACATaGAGGGCTGTGTTCCCTGAGGAGCTAGTGCTGTCCACGTCACAG +
Preference number: 5 (lower is better)
Translates to: SSTMTQSKRLRITAT*RAVFPEELVLSTSQ
Trigger: CTGTGACGTGGACAGCACTAGCTCCTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGTCATGGTGCTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp GCATATAGGCCATGGATTTACTGTGCAGAATGGCCAGGGCCAGGATaGCCCCTGTGCTGGTTCCTGCCACCCAGTCGAAGAGGTCCTTGG +
Preference number: 5 (lower is better)
Translates to: AYRPWIYCAEWPGPG*PLCWFLPPSRRGPW
Trigger: CCAAGGACCTCTTCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCCTGGCCCTGGCCATTCTGCACAGTAAATCCATGGCCTATATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp ATCTTGCAGGCCAGGTGCAGTGGAGTCAGCCCTTGGTTGTTTACCTaGTTCAGGCCGGCTGAGGCGTTCTTCCCTAGGAGCTGTAGCACC +
Preference number: 5 (lower is better)
Translates to: ILQARCSGVSPWLFT*FRPAEAFFPRSCST
Trigger: GGTGCTACAGCTCCTAGGGAAGAACGCCTCAGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp TCCTGCTTTCCCATCTTGCAGGCCAGGTGCAGTGGAGTCAGCCCTTaGTTGTTTACCTGGTTCAGGCCGGCTGAGGCGTTCTTCCCTAGG +
Preference number: 5 (lower is better)
Translates to: SCFPILQARCSGVSP*LFTWFRPAEAFFPR
Trigger: CCTAGGGAAGAACGCCTCAGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp GTCGTGACTCCGCTTCTCGTCCCTCATGGAGCTCAGGATGAACGCTaGCTTCCGGGCTCGAGAGATGGGCATGAGATCCTGAAGCTGCTT +
Preference number: 5 (lower is better)
Translates to: VVTPLLVPHGAQDER*LPGSRDGHEILKLL
Trigger: AAGCAGCTTCAGGATCTCATGCCCATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGAGGGACGAGAAGCGGAGTCACGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR CAA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTTGACATCTGTCATCTaGGTGTGCTCCCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLTSVI*VCSPNS
Trigger: GGAGTTTGGGGAGCACACCAAGATGACAGATGTCAA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATGGGCCGGAAATAGGTaGGGGCTGCCCCACTGCTCC +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGWAGNR*GLPHCS
Trigger: GGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 90 bp ACTCCAGTTGGAAGAGCCGGAAGCCGCTCTGTGGGTTCCTCGGGCTaGCCAGGACACAGTCCCAGGTGCGATTGGAGACATTCTGTAACA +
Preference number: 5 (lower is better)
Translates to: TPVGRAGSRSVGSSG*PGHSPRCDWRHSVT
Trigger: TGTTACAGAATGTCTCCAATCGCACCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGGCTCTTCCAACTGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS GCA 90 bp ATGAGGGCTTTGACCATCTCCATGTTATCTTTCGACATGGCCAGGTaGAGTGGCGTGTTCCCGTGCTCTCCGCGGGCACCTGCATTAGCC +
Preference number: 5 (lower is better)
Translates to: MRALTISMLSFDMAR*SGVFPCSPRAPALA
Trigger: GGCTAATGCAGGTGCCCGCGGAGAGCACGGGAACACGCCACTGCACCTGGCCATGTCGAAAGATAACATGGAGATGGTCAAAGCCCTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACAGTGGAGTCAGCCCTaGGTTGTTTACCTGGTTCAG +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLQWSQP*VVYLVQ
Trigger: CTGAACCAGGTAAACAACCAAGGGCTGACTCCACTG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGTCCTGCTTTCCCATCTaGCAGGCCAGGTGCAGTGGA +
Preference number: 5 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWSCFPI*QARCSG
Trigger: TCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGA...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTTTGCTGTGGATCTGGTaGCTGTCCATGCTGATAATC +
Preference number: 5 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGLLWIW*LSMLII
Trigger: GATTATCAGCATGGACAGCAACCAGATCCACAGCAA...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGACACAGTCAAAGCGGTaGCGCATCACCGCCACATGC +
Preference number: 5 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWTQSKR*RITATC
Trigger: GCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGT...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTACTTCAGGTTAATGTTTaGGTTGCAGCGGGGCTCTCG +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLLQVNV*VAAGLS
Trigger: CGAGAGCCCCGCTGCAACCAAAACATTAACCTGAAG...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCGCATCCAGTGTGGGGTaGTTGGCCAGCAGCCCTCCA +
Preference number: 5 (lower is better)
Translates to: NSGLSASSSKVQMDQERCASSVG*LASSPP
Trigger: TGGAGGGCTGCTGGCCAACAACCCCACACTGGATGC...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAGAGTTTCTTCACCTaGTTGCCCTGGCCCTTGCGG +
Preference number: 5 (lower is better)
Translates to: GFQPRVVKCRWTRRGASWESFFT*LPWPLR
Trigger: CCGCAAGGGCCAGGGCAACAAGGTGAAGAAACTCTC...CCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTG +
Preference number: 5 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAILPSS*APKTVL
Trigger: CAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGAT...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp CATTACAGAGCAGCAGGACGCGCACCATCTCCTGCTTTCCCATCTTaGAGGCCAGGTGCAGTGGAGTCAGCCCTTGGTTGTTTACCTGGT +
Preference number: 5 (lower is better)
Translates to: HYRAAGRAPSPAFPS*RPGAVESALGCLPG
Trigger: ACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGTCCTGCTGCTCTGTAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTCATTCTCTGTGCTGTaGGCACAGCTGATGATGCGG +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWSFSVL*AQLMMR
Trigger: CCGCATCATCAGCTGTGCCAACAGCACAGAGAATGA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTCATTCTCTGTGCTGTaGGCACAGCTGATGATGCGG +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGSFSVL*AQLMMR
Trigger: CCGCATCATCAGCTGTGCCAACAGCACAGAGAATGA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCTGGGCGTGGCAGTATaGTACCAGCTCCACCAGGAT +
Preference number: 5 (lower is better)
Translates to: REEHMHRVDLWELGGLLVLGVAV*YQLHQD
Trigger: ATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAG...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACACTGGGCGTGGCAGTATaGTACCAGCTCCACCAGGAT +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLGVAV*YQLHQD
Trigger: ATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAG...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGGAGTCAGCCCTTGGTaGTTTACCTGGTTCAGGCCG +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTGVSPW*FTWFRP
Trigger: CGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGGAGTCAGCCCTTGGTaGTTTACCTGGTTCAGGCCG +
Preference number: 5 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFGVSPW*FTWFRP
Trigger: CGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTCAGTGGAGTCAGCCCTaGGTTGTTTACCTGGTTCAG +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGQWSQP*VVYLVQ
Trigger: CTGAACCAGGTAAACAACCAAGGGCTGACTCCACTG...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGCAGTGGAGTCAGCCCTaGGTTGTTTACCTGGTTCAG +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWQWSQP*VVYLVQ
Trigger: CTGAACCAGGTAAACAACCAAGGGCTGACTCCACTG...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCACACAGTCAAAGCGGTaGCGCATCACCGCCACATGC +
Preference number: 5 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFTQSKR*RITATC
Trigger: GCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGACACAGTCAAAGCGGTaGCGCATCACCGCCACATGC +
Preference number: 5 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLTQSKR*RITATC
Trigger: GCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGTCTCCCCAAAGTCGTTaGGGGTGTCCACTTCTGCCC +
Preference number: 5 (lower is better)
Translates to: REEHMHRVDLWELGGLLVSPQSR*GCPLLP
Trigger: GGGCAGAAGTGGACACCCCAAACGACTTTGGGGAGA...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAAGCTGCTTGCTGATCTaGGAGGCTATCAATGCAGGA +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLSCLLI*EAINAG
Trigger: TCCTGCATTGATAGCCTCCAAGATCAGCAAGCAGCT...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTATTGACATCTGTCATCTaGGTGTGCTCCCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLLTSVI*VCSPNS
Trigger: GGAGTTTGGGGAGCACACCAAGATGACAGATGTCAA...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CAGGGTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATCACCTTGGGTTTTTaGACATCTGTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: QGGEAGRCEGQSRMALDAITLGF*TSVILV
Trigger: CACCAAGATGACAGATGTCAAAAAACCCAAGGTGAT...GGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCACCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGAGAGTTTCTTCACCTaGTTGCCCTGGCCCTTGCGG +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTESFFT*LPWPLR
Trigger: CCGCAAGGGCCAGGGCAACAAGGTGAAGAAACTCTC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLAPKTV*ASSQGL
Trigger: CAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGC...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp GGGCATGAGATCCTGAAGCTGCTTGCTGATCTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTCGTTTGGGGTGTCCACTTCTGCCCC +
Preference number: 5 (lower is better)
Translates to: GHEILKLLADLGGYQ*RSLPKVVWGVHFCP
Trigger: GGGGCAGAAGTGGACACCCCAAACGACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAGATCAGCAAGCAGCTTCAGGATCTCATGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS GCA 90 bp GAGCGCCTTCCTGGTAATCAGCTTGCTGATCTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTCGTTTGGGGTGTCCACTTCTGCCCC +
Preference number: 5 (lower is better)
Translates to: ERLPGNQLADLGGYQ*RSLPKVVWGVHFCP
Trigger: GGGGCAGAAGTGGACACCCCAAACGACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAGATCAGCAAGCTGATTACCAGGAAGGCGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS CCA 90 bp GGCCCTTGCGGATCATGTCCTGATTGTACTCATGGATTTCAGTCATaGCATCCAGTGTGGGGTTGTTGGCCAGCAGCCCTCCATCCAGGA +
Preference number: 5 (lower is better)
Translates to: GPCGSCPDCTHGFQS*HPVWGCWPAALHPG
Trigger: TCCTGGATGGAGGGCTGCTGGCCAACAACCCCACACTGGATGCCATGACTGAAATCCATGAGTACAATCAGGACATGATCCGCAAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGAGTCAGCCCTTGGTaGTTTACCTGGTTCAGGCCG +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGGVSPW*FTWFRP
Trigger: CGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGATCCTGCTTTCCCATCTaGCAGGCCAGGTGCAGTGGA +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGSCFPI*QARCSG
Trigger: TCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGA...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCTCTCCCCAAAGTCGTTaGGGGTGTCCACTTCTGCCC +
Preference number: 5 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSPQSR*GCPLLP
Trigger: GGGCAGAAGTGGACACCCCAAACGACTTTGGGGAGA...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTTGACATCTGTCATCTaGGTGTGCTCCCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWLTSVI*VCSPNS
Trigger: GGAGTTTGGGGAGCACACCAAGATGACAGATGTCAA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTTGACATCTGTCATCTaGGTGTGCTCCCCAAACTCC +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGLTSVI*VCSPNS
Trigger: GGAGTTTGGGGAGCACACCAAGATGACAGATGTCAA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAAGTTTCTTCACCTTGTaGCCCTGGCCCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTSFFTL*PWPLRI
Trigger: GATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAACT...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGAGTTTCTTCACCTTGTaGCCCTGGCCCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: REEHMHRVDLWELGGLLVSFFTL*PWPLRI
Trigger: GATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAACT...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCAGTTTCTTCACCTTGTaGCCCTGGCCCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSFFTL*PWPLRI
Trigger: GATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAACT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGAGAGTTTCTTCACCTaGTTGCCCTGGCCCTTGCGG +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGESFFT*LPWPLR
Trigger: CCGCAAGGGCCAGGGCAACAAGGTGAAGAAACTCTC...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACAGCCAGTTCCCAAGGGTaGCTGGGACGAAAGACATCT +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTASSQG*LGRKTS
Trigger: AGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGC...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWAPKTV*ASSQGL
Trigger: CAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGC...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGAPKTV*ASSQGL
Trigger: CAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGC...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 90 bp CCCCTTGCACAGCGTAATGGAAGGCAGTCTCTCCTTTGTTGTCAGTaGCATCCATCTGGGCGTGGCAGTATTGTACCAGCTCCACCAGGA +
Preference number: 5 (lower is better)
Translates to: PLAQRNGRQSLLCCQ*HPSGRGSIVPAPPG
Trigger: TCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAAGGAGAGACTGCCTTCCATTACGCTGTGCAAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 90 bp GATTGTACTCATGGATTTCAGTCATGGCATCCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCAGGAAGCGTCCATTGGGCCGGAAAT +
Preference number: 5 (lower is better)
Translates to: DCTHGFQSWHPVWGC*PAALHPGSVHWAGN
Trigger: ATTTCCGGCCCAATGGACGCTTCCTGGATGGAGGGCTGCTGGCCAACAACCCCACACTGGATGCCATGACTGAAATCCATGAGTACAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACATCATTCTCTGTGCTGTaGGCACAGCTGATGATGCGG +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTSFSVL*AQLMMR
Trigger: CCGCATCATCAGCTGTGCCAACAGCACAGAGAATGA...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTTTGCTGTGGATCTGGTaGCTGTCCATGCTGATAATC +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGLLWIW*LSMLII
Trigger: GATTATCAGCATGGACAGCAACCAGATCCACAGCAA...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGCGGTGGCGGCAGGGTAATACAATGAGGGCTTaGACCATCTCCATGTTATCT +
Preference number: 5 (lower is better)
Translates to: HRVDLWELGGLLVRWRQGNTMRA*TISMLS
Trigger: AGATAACATGGAGATGGTCAAAGCCCTCATTGTATT...ACCCTGCCGCCACCGCACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGCTTCAGGTTAATGTTTaGGTTGCAGCGGGGCTCTCG +
Preference number: 5 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLLQVNV*VAAGLS
Trigger: CGAGAGCCCCGCTGCAACCAAAACATTAACCTGAAG...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCCTTCAGGTTAATGTTTaGGTTGCAGCGGGGCTCTCG +
Preference number: 5 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFLQVNV*VAAGLS
Trigger: CGAGAGCCCCGCTGCAACCAAAACATTAACCTGAAG...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCAGTTTCTTCACCTTGTaGCCCTGGCCCTTGCGGATC +
Preference number: 5 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSFFTL*PWPLRI
Trigger: GATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAACT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCGCCAGTTCCCAAGGGTaGCTGGGACGAAAGACATCT +
Preference number: 5 (lower is better)
Translates to: NSGLSASSSKVQMDQERCASSQG*LGRKTS
Trigger: AGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGC...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GTGGAGAGGCTGGCAGGTGCGAGGGGCAAAGTCGAATGGCGCTGGATGCCATTAATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTG +
Preference number: 5 (lower is better)
Translates to: VERLAGARGKVEWRWMPLILPSS*APKTVL
Trigger: CAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGAT...TAATGGCATCCAGCGCCATTCGACTTTGCCCCTCGCACCTGCCAGCCTCTCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTATCAGCTTGCTGATCTaGGAGGCTATCAATGCAGGA +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGISLLI*EAINAG
Trigger: TCCTGCATTGATAGCCTCCAAGATCAGCAAGCTGAT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGTTCCTGGTAATCAGCTaGCTGATCTTGGAGGCTATC +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWFLVIS*LILEAI
Trigger: GATAGCCTCCAAGATCAGCAAGCTGATTACCAGGAA...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS CCA 90 bp TGGAAGGCAGTCTCTCCTTTGTTGTCAGTGACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCCACCAGGATCTCACTGTCACCCTTG +
Preference number: 5 (lower is better)
Translates to: WKAVSPLLSVTSIWA*QYCTSSTRISLSPL
Trigger: CAAGGGTGACAGTGAGATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAAGGAGAGACTGCCTTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 90 bp TCATGTCCTGATTGTACTCATGGATTTCAGTCATGGCATCCAGTGTaGGGTTGTTGGCCAGCAGCCCTCCATCCAGGAAGCGTCCATTGG +
Preference number: 5 (lower is better)
Translates to: SCPDCTHGFQSWHPV*GCWPAALHPGSVHW
Trigger: CCAATGGACGCTTCCTGGATGGAGGGCTGCTGGCCAACAACCCCACACTGGATGCCATGACTGAAATCCATGAGTACAATCAGGACATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp CATCTGGATCTGTGCAACAGTCCACGACCATCTTGCCCAGTTCCTTaGCTCCAAAAACAGTTTTGGCCAGTTCCCAAGGGTTGCTGGGAC +
Preference number: 5 (lower is better)
Translates to: HLDLCNSPRPSCPVP*LQKQFWPVPKGCWD
Trigger: GTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACTGTTGCACAGATCCAGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCTCATTCTCTGTGCTGTaGGCACAGCTGATGATGCGG +
Preference number: 5 (lower is better)
Translates to: NSGLSASSSKVQMDQERCSFSVL*AQLMMR
Trigger: CCGCATCATCAGCTGTGCCAACAGCACAGAGAATGA...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCAGCTGCTTGCTGATCTaGGAGGCTATCAATGCAGGA +
Preference number: 5 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFSCLLI*EAINAG
Trigger: TCCTGCATTGATAGCCTCCAAGATCAGCAAGCAGCT...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR CAA 90 bp AGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAGGGCTCCTAGTGAGCTGCTTGCTGATCTaGGAGGCTATCAATGCAGGA +
Preference number: 5 (lower is better)
Translates to: REEHMHRVDLWELGGLLVSCLLI*EAINAG
Trigger: TCCTGCATTGATAGCCTCCAAGATCAGCAAGCAGCT...CACTAGGAGCCCTCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGACTTCAGGTTAATGTTTaGGTTGCAGCGGGGCTCTCG +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGLQVNV*VAAGLS
Trigger: CGAGAGCCCCGCTGCAACCAAAACATTAACCTGAAG...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AAACCCGTTTATTTCACAGTTGAGGTGGCCCTGAGCCCCTCCCCACTCTCCTTCGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTG +
Preference number: 5 (lower is better)
Translates to: KPVYFTVEVALSPSPLSFAPKTV*ASSQGL
Trigger: CAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGC...GAAGGAGAGTGGGGAGGGGCTCAGGGCCACCTCAACTGTGAAATAAACGGGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTG +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWILPSS*APKTVL
Trigger: CAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGAT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 90 bp CCAGTTCCTTGGCTCCAAAAACAGTTTTGGCCAGTTCCCAAGGGTTaGTGGGACGAAAGACATCTACACAGGTTACAGGCACTTGAGGGG +
Preference number: 5 (lower is better)
Translates to: PVPWLQKQFWPVPKG*WDERHLHRLQALEG
Trigger: CCCCTCAAGTGCCTGTAACCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp TTACAGGCACTTGAGGGGACTTTCCTGTCCCCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGTTGCCCTGGCCCTTGCGGATCATGT +
Preference number: 5 (lower is better)
Translates to: LQALEGTFLSPEKRL*RVSSPCCPGPCGSC
Trigger: ACATGATCCGCAAGGGCCAGGGCAACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGGGGACAGGAAAGTCCCCTCAAGTGCCTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 90 bp AGTCCACGACCATCTTGCCCAGTTCCTTGGCTCCAAAAACAGTTTTaGCCAGTTCCCAAGGGTTGCTGGGACGAAAGACATCTACACAGG +
Preference number: 5 (lower is better)
Translates to: SPRPSCPVPWLQKQF*PVPKGCWDERHLHR
Trigger: CCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AGAGGTGCCTCGTGGGAACCGGTTTGTGCTCTGAGTCCTAGTGTCAGATGGACATTGCTGTGGATCTGGTaGCTGTCCATGCTGATAATC +
Preference number: 5 (lower is better)
Translates to: RGASWEPVCALSPSVRWTLLWIW*LSMLII
Trigger: GATTATCAGCATGGACAGCAACCAGATCCACAGCAA...TGTCCATCTGACACTAGGACTCAGAGCACAAACCGGTTCCCACGAGGCACCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAAGCTGCTTGCTGATCTaGGAGGCTATCAATGCAGGA +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGSCLLI*EAINAG
Trigger: TCCTGCATTGATAGCCTCCAAGATCAGCAAGCAGCT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGATCACCTTGGGTTTTTaGACATCTGTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWITLGF*TSVILV
Trigger: CACCAAGATGACAGATGTCAAAAAACCCAAGGTGAT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCAGGGAGCCTGGGACCACTGGCACCGTAGTGTTGATCTCTGATATGTGGGGTATCACCTTGGGTTTTTaGACATCTGTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: AREPGTTGTVVLISDMWGITLGF*TSVILV
Trigger: CACCAAGATGACAGATGTCAAAAAACCCAAGGTGAT...ACCCCACATATCAGAGATCAACACTACGGTGCCAGTGGTCCCAGGCTCCCTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 90 bp CAAGGGTTGCTGGGACGAAAGACATCTACACAGGTTACAGGCACTTaGGGGGACTTTCCTGTCCCCAGAGAAACGACTATGGAGAGTTTC +
Preference number: 5 (lower is better)
Translates to: QGLLGRKTSTQVTGT*GDFPVPRETTMESF
Trigger: GAAACTCTCCATAGTCGTTTCTCTGGGGACAGGAAAGTCCCCTCAAGTGCCTGTAACCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp GCCCCTCCCCACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGAATACAATGAGGGCTTaGACCATCTCCATGTTATCT +
Preference number: 5 (lower is better)
Translates to: APPHSPSREEHMHRVDLWNTMRA*TISMLS
Trigger: AGATAACATGGAGATGGTCAAAGCCCTCATTGTATT...CCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTGGGGAGGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp TCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCCTCGTGGGAACCGGTTTGATCACCTTGGGTTTTTaGACATCTGTCATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: SSSKVQMDQERCLVGTGLITLGF*TSVILV
Trigger: CACCAAGATGACAGATGTCAAAAAACCCAAGGTGAT...CAAACCGGTTCCCACGAGGCACCTCTCCTGGTCCATCTGCACTTTACTACTCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp AACTCTGGGCTTTCAGCCTCGAGTAGTAAAGTGCAGATGGACCAGGAGAGGTGCATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTG +
Preference number: 5 (lower is better)
Translates to: NSGLSASSSKVQMDQERCILPSS*APKTVL
Trigger: CAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGAT...GCACCTCTCCTGGTCCATCTGCACTTTACTACTCGAGGCTGAAAGCCCAGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTG +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGILPSS*APKTVL
Trigger: CAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGAT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS-3UTR CAA 90 bp CACTCTCCTTCCAGAGAAGAGCACATGCACAGGGTTGACCTTTGGGAGCTAGGAAATACAATGAGGGCTTaGACCATCTCCATGTTATCT +
Preference number: 5 (lower is better)
Translates to: HSPSREEHMHRVDLWELGNTMRA*TISMLS
Trigger: AGATAACATGGAGATGGTCAAAGCCCTCATTGTATT...TCCTAGCTCCCAAAGGTCAACCCTGTGCATGTGCTCTTCTCTGGAAGGAGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp GCACCAGGCCCGGGCCCGATCCACAGCCCGCCCATCTaGATCTGTGCAACAGTCCACGACCATCTTGCCCAG +
Preference number: 6 (lower is better)
Translates to: APGPGPIHSPPI*ICATVHDHLAQ
Trigger: CTGGGCAAGATGGTCGTGGACTGTTGCACAGATCCAGATGGGCGGGCTGTGGATCGGGCCCGGGCCTGGTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp AATGGCCAGGGCCAGGATGCCCCCTGTGCTGGTTCCTaGCACCCAGTCGAAGAGGTCCTTGGTGGCCACTCC +
Preference number: 6 (lower is better)
Translates to: NGQGQDAPCAGS*HPVEEVLGGHS
Trigger: GGAGTGGCCACCAAGGACCTCTTCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCCTGGCCCTGGCCATT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp CCGGAAATAGGTTGGGGCTGCCCCACTGCTCCGGGCTaGACGCCATACCAGTTGGTCTGCAGGCTGAGTCGG +
Preference number: 6 (lower is better)
Translates to: PEIGWGCPTAPG*TPYQLVCRLSR
Trigger: CCGACTCAGCCTGCAGACCAACTGGTATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp CCAGCAGCCCTCCATCCAGGAAGCGTCCATTGGGCCGGAAATAGGTaGGGGCTGCCCCACTGCTCCGGGCTGCACGCCATACCAGTTGGT +
Preference number: 6 (lower is better)
Translates to: PAALHPGSVHWAGNR*GLPHCSGLHAIPVG
Trigger: ACCAACTGGTATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTGGATGGAGGGCTGCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp GTGCAGTGGCGTGTTCCCGTGCTCTCCGCGGGCACCTaGATTAGCCCCGTAGGTCAGCAGCACCATGACACA +
Preference number: 6 (lower is better)
Translates to: VQWRVPVLSAGT*ISPVGQQHHDT
Trigger: TGTGTCATGGTGCTGCTGACCTACGGGGCTAATGCAGGTGCCCGCGGAGAGCACGGGAACACGCCACTGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp CAGGAAGCGTCCATTGGGCCGGAAATAGGTTGGGGCTaGCCCACTGCTCCGGGCTGCACGCCATACCAGTTG +
Preference number: 6 (lower is better)
Translates to: QEASIGPEIGWG*PTAPGCTPYQL
Trigger: CAACTGGTATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp TCCATCCAGGAAGCGTCCATTGGGCCGGAAATAGGTTaGGGCTGCCCCACTGCTCCGGGCTGCACGCCATAC +
Preference number: 6 (lower is better)
Translates to: SIQEASIGPEIG*GCPTAPGCTPY
Trigger: GTATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTGGATGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp CCTGTGCTGGTTCCTGCCACCCAGTCGAAGAGGTCCTaGGTGGCCACTCCCGAGGCCTTCTCGATGGCGATG +
Preference number: 6 (lower is better)
Translates to: PVLVPATQSKRS*VATPEAFSMAM
Trigger: CATCGCCATCGAGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCGACTGGGTGGCAGGAACCAGCACAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp CTCCATCCAGGAAGCGTCCATTGGGCCGGAAATAGGTaGGGGCTGCCCCACTGCTCCGGGCTGCACGCCATA +
Preference number: 6 (lower is better)
Translates to: LHPGSVHWAGNR*GLPHCSGLHAI
Trigger: TATGGCGTGCAGCCCGGAGCAGTGGGGCAGCCCCAACCTATTTCCGGCCCAATGGACGCTTCCTGGATGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp AGGATGCCCCCTGTGCTGGTTCCTGCCACCCAGTCGAAGAGGTCCTaGGTGGCCACTCCCGAGGCCTTCTCGATGGCGATGAGAAGCTGG +
Preference number: 6 (lower is better)
Translates to: RMPPVLVPATQSKRS*VATPEAFSMAMRSW
Trigger: CCAGCTTCTCATCGCCATCGAGAAGGCCTCGGGAGTGGCCACCAAGGACCTCTTCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 72 bp GGAAGAGCCGGAAGCCGCTCTGTGGGTTCCTCGGGCTaGCCAGGACACAGTCCCAGGTGCGATTGGAGACAT +
Preference number: 6 (lower is better)
Translates to: GRAGSRSVGSSG*PGHSPRCDWRH
Trigger: ATGTCTCCAATCGCACCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGGCTCTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS TCA 72 bp CAGCTGGGGTGGTTCCGGATGAGGTCGGTCAGGTGCTaGAGCACCTCCACATGCAGGACCTGCACAGAGCTC +
Preference number: 6 (lower is better)
Translates to: QLGWFRMRSVRC*STSTCRTCTEL
Trigger: GAGCTCTGTGCAGGTCCTGCATGTGGAGGTGCTTCAGCACCTGACCGACCTCATCCGGAACCACCCCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 72 bp CTCAGACTCCAGTTGGAAGAGCCGGAAGCCGCTCTGTaGGTTCCTCGGGCTGACCAGGACACAGTCCCAGGT +
Preference number: 6 (lower is better)
Translates to: LRLQLEEPEAAL*VPRADQDTVPG
Trigger: ACCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCACAGAGCGGCTTCCGGCTCTTCCAACTGGAGTCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 72 bp TGGAAGTTCACCAGGGCGTCTGCCTCAGACTCCAGTTaGAAGAGCCGGAAGCCGCTCTGTGGGTTCCTCGGG +
Preference number: 6 (lower is better)
Translates to: WKFTRASASDSS*KSRKPLCGFLG
Trigger: CCCGAGGAACCCACAGAGCGGCTTCCGGCTCTTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAACTTCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 72 bp GGGCCATCTCGGCGTTCTTGGCCCAATGGAGTGGGCTaGCTCCGTAGCGAGGATCCTTGCTGTGGATCTGGT +
Preference number: 6 (lower is better)
Translates to: GPSRRSWPNGVG*LRSEDPCCGSG
Trigger: ACCAGATCCACAGCAAGGATCCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAGAACGCCGAGATGGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp GCCACTCCCGAGGCCTTCTCGATGGCGATGAGAAGCTaGATAATGACCAGGCCTTTCACGCCCCCTCCGTCC +
Preference number: 6 (lower is better)
Translates to: ATPEAFSMAMRS*IMTRPFTPPPS
Trigger: GGACGGAGGGGGCGTGAAAGGCCTGGTCATTATCCAGCTTCTCATCGCCATCGAGAAGGCCTCGGGAGTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp CTGGGAGGAGAACTGCTGGAAGTTCACCAGGGCGTCTaGCTCAGACTCCAGTTGGAAGAGCCGGAAGCCGCT +
Preference number: 6 (lower is better)
Translates to: LGGELLEVHQGV*LRLQLEEPEAA
Trigger: AGCGGCTTCCGGCTCTTCCAACTGGAGTCTGAGGCAGACGCCCTGGTGAACTTCCAGCAGTTCTCCTCCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS GCA 72 bp CGGGCATTACAGAGCAGCAGGACGCGCACCATCTCCTaGTTTCCCATCTTGCAGGCCAGGTGCAGTGGAGTC +
Preference number: 6 (lower is better)
Translates to: RALQSSRTRTIS*FPILQARCSGV
Trigger: GACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGTCCTGCTGCTCTGTAATGCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp GTAGACCTCGGTCTCCCAGAGGGCGTTGACCAGCACTaGATCACTGACCTCGTCCAGCATGATGTCGGACCC +
Preference number: 6 (lower is better)
Translates to: VDLGLPEGVDQH*ITDLVQHDVGP
Trigger: GGGTCCGACATCATGCTGGACGAGGTCAGTGATGCAGTGCTGGTCAACGCCCTCTGGGAGACCGAGGTCTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp GCCAGGTGCAGTGGAGTCAGCCCTTGGTTGTTTACCTaGTTCAGGCCGGCTGAGGCGTTCTTCCCTAGGAGC +
Preference number: 6 (lower is better)
Translates to: ARCSGVSPWLFT*FRPAEAFFPRS
Trigger: GCTCCTAGGGAAGAACGCCTCAGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CCCATCTTGCAGGCCAGGTGCAGTGGAGTCAGCCCTTaGTTGTTTACCTGGTTCAGGCCGGCTGAGGCGTTC +
Preference number: 6 (lower is better)
Translates to: PILQARCSGVSP*LFTWFRPAEAF
Trigger: GAACGCCTCAGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CATTCGGGCCATCTCGGCGTTCTTGGCCCAATGGAGTaGGCTGGCTCCGTAGCGAGGATCCTTGCTGTGGAT +
Preference number: 6 (lower is better)
Translates to: HSGHLGVLGPME*AGSVARILAVD
Trigger: ATCCACAGCAAGGATCCTCGCTACGGAGCCAGCCCACTCCATTGGGCCAAGAACGCCGAGATGGCCCGAATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CCGCTTCTCGTCCCTCATGGAGCTCAGGATGAACGCTaGCTTCCGGGCTCGAGAGATGGGCATGAGATCCTG +
Preference number: 6 (lower is better)
Translates to: PLLVPHGAQDER*LPGSRDGHEIL
Trigger: CAGGATCTCATGCCCATCTCTCGAGCCCGGAAGCCAGCGTTCATCCTGAGCTCCATGAGGGACGAGAAGCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp AGCAGCAGGACGCGCACCATCTCCTGCTTTCCCATCTaGCAGGCCAGGTGCAGTGGAGTCAGCCCTTGGTTG +
Preference number: 6 (lower is better)
Translates to: SSRTRTISCFPI*QARCSGVSPWL
Trigger: CAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGTCCTGCTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 72 bp CAGGATCAGCTGCCCTTCCTCCCGGACACGTTCACTTaGGACGTAGTCAGTCAGGGACACCTCCTTCACCCG +
Preference number: 6 (lower is better)
Translates to: QDQLPFLPDTFT*DVVSQGHLLHP
Trigger: CGGGTGAAGGAGGTGTCCCTGACTGACTACGTCTCAAGTGAACGTGTCCGGGAGGAAGGGCAGCTGATCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS TCA 72 bp CTAGGTGTGTCACTGTCCAGCTGGGGTGGTTCCGGATaGGGTCGGTCAGGTGCTGAAGCACCTCCACATGCA +
Preference number: 6 (lower is better)
Translates to: LGVSLSSWGGSG*GRSGAEAPPHA
Trigger: TGCATGTGGAGGTGCTTCAGCACCTGACCGACCTCATCCGGAACCACCCCAGCTGGACAGTGACACACCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS TCA 72 bp TTCTCTGTGCTGTTGGCACAGCTGATGATGCGGCTGTaGTGGAAGCACTCCCGGATGCCGAGCTCCACGGCT +
Preference number: 6 (lower is better)
Translates to: FSVLLAQLMMRL*WKHSRMPSSTA
Trigger: AGCCGTGGAGCTCGGCATCCGGGAGTGCTTCCATCACAGCCGCATCATCAGCTGTGCCAACAGCACAGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS TCA 72 bp CAGGAACTCCTCCAGGGGCCCAGACTCATAGGGCCGTaGGCCCCGAAACACCTCGTCCTTCATACGGAAGTA +
Preference number: 6 (lower is better)
Translates to: QELLQGPRLIGP*APKHLVLHTEV
Trigger: TACTTCCGTATGAAGGACGAGGTGTTTCGGGGCTCACGGCCCTATGAGTCTGGGCCCCTGGAGGAGTTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp CCATGGATTTACTGTGCAGAATGGCCAGGGCCAGGATaGCCCCTGTGCTGGTTCCTGCCACCCAGTCGAAGA +
Preference number: 6 (lower is better)
Translates to: PWIYCAEWPGPG*PLCWFLPPSRR
Trigger: TCTTCGACTGGGTGGCAGGAACCAGCACAGGGGGCATCCTGGCCCTGGCCATTCTGCACAGTAAATCCATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp CTCTGTGGGTTCCTCGGGCTGACCAGGACACAGTCCCAGGTGCGATaGGAGACATTCTGTAACAGGATCAGCTGCCCTTCCTCCCGGACA +
Preference number: 6 (lower is better)
Translates to: LCGFLGLTRTQSQVR*ETFCNRISCPSSRT
Trigger: TGTCCGGGAGGAAGGGCAGCTGATCCTGTTACAGAATGTCTCCAATCGCACCTGGGACTGTGTCCTGGTCAGCCCGAGGAACCCACAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 90 bp TGCTTTCCCATCTTGCAGGCCAGGTGCAGTGGAGTCAGCCCTTGGTaGTTTACCTGGTTCAGGCCGGCTGAGGCGTTCTTCCCTAGGAGC +
Preference number: 6 (lower is better)
Translates to: CFPILQARCSGVSPW*FTWFRPAEAFFPRS
Trigger: GCTCCTAGGGAAGAACGCCTCAGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp GCATTACAGAGCAGCAGGACGCGCACCATCTCCTGCTTTCCCATCTaGCAGGCCAGGTGCAGTGGAGTCAGCCCTTGGTTGTTTACCTGG +
Preference number: 6 (lower is better)
Translates to: ALQSSRTRTISCFPI*QARCSGVSPWLFTW
Trigger: CCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCGCGTCCTGCTGCTCTGTAATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp ATGACACAGTCAAAGCGGTTGCGCATCACCGCCACATaGAGGGCTGTGTTCCCTGAGGAGCTAGTGCTGTCC +
Preference number: 6 (lower is better)
Translates to: MTQSKRLRITAT*RAVFPEELVLS
Trigger: GGACAGCACTAGCTCCTCAGGGAACACAGCCCTGCATGTGGCGGTGATGCGCAACCGCTTTGACTGTGTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp TTGACCATCTCCATGTTATCTTTCGACATGGCCAGGTaGAGTGGCGTGTTCCCGTGCTCTCCGCGGGCACCT +
Preference number: 6 (lower is better)
Translates to: LTISMLSFDMAR*SGVFPCSPRAP
Trigger: AGGTGCCCGCGGAGAGCACGGGAACACGCCACTGCACCTGGCCATGTCGAAAGATAACATGGAGATGGTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp GACACCTCCTTCACCCGGAATGGGTTCGAGAACAAGTaGGTGACGCTACTGAGGGTGTTGACGAGGCGTCCG +
Preference number: 6 (lower is better)
Translates to: DTSFTRNGFENK*VTLLRVLTRRP
Trigger: CGGACGCCTCGTCAACACCCTCAGTAGCGTCACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAGGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000172936.2
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 72 bp ACAGGATCAGCTGCCCTTCCTCCCGGACACGTTCACTaGAGACGTAGTCAGTCAGGGACACCTCCTTCACCC +
Preference number: 6 (lower is better)
Translates to: TGSAALPPGHVH*RRSQSGTPPSP
Trigger: GGGTGAAGGAGGTGTCCCTGACTGACTACGTCTCAAGTGAACGTGTCCGGGAGGAAGGGCAGCTGATCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 72 bp ATCTTGCAGGCCAGGTGCAGTGGAGTCAGCCCTTGGTaGTTTACCTGGTTCAGGCCGGCTGAGGCGTTCTTC +
Preference number: 6 (lower is better)
Translates to: ILQARCSGVSPW*FTWFRPAEAFF
Trigger: GAAGAACGCCTCAGCCGGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp TCAGTCAGGGACACCTCCTTCACCCGGAATGGGTTCGAGAACAAGTaGGTGACGCTACTGAGGGTGTTGACGAGGCGTCCGAAGAACTGC +
Preference number: 6 (lower is better)
Translates to: SVRDTSFTRNGFENK*VTLLRVLTRRPKNC
Trigger: GCAGTTCTTCGGACGCCTCGTCAACACCCTCAGTAGCGTCACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAGGTGTCCCTGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000172936.2
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS GCA 72 bp CGCACCATCTCCTGCTTTCCCATCTTGCAGGCCAGGTaGAGTGGAGTCAGCCCTTGGTTGTTTACCTGGTTC +
Preference number: 6 (lower is better)
Translates to: RTISCFPILQAR*SGVSPWLFTWF
Trigger: GAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATGGTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CATCTCCTGCTTTCCCATCTTGCAGGCCAGGTGCAGTaGAGTCAGCCCTTGGTTGTTTACCTGGTTCAGGCC +
Preference number: 6 (lower is better)
Translates to: HLLLSHLAGQVQ*SQPLVVYLVQA
Trigger: GGCCTGAACCAGGTAAACAACCAAGGGCTGACTCCACTGCACCTGGCCTGCAAGATGGGAAAGCAGGAGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CATGGATTTCAGTCATGGCATCCAGTGTGGGGTTGTTaGCCAGCAGCCCTCCATCCAGGAAGCGTCCATTGG +
Preference number: 6 (lower is better)
Translates to: HGFQSWHPVWGC*PAALHPGSVHW
Trigger: CCAATGGACGCTTCCTGGATGGAGGGCTGCTGGCCAACAACCCCACACTGGATGCCATGACTGAAATCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp TCACTGACCTCGTCCAGCATGATGTCGGACCCTAGCTaGGGGTTCAGTCTGAAGTACTGGATGCCGACCATC +
Preference number: 6 (lower is better)
Translates to: SLTSSSMMSDPS*GFSLKYWMPTI
Trigger: GATGGTCGGCATCCAGTACTTCAGACTGAACCCCCAGCTAGGGTCCGACATCATGCTGGACGAGGTCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp TTCCTCGGGCTGACCAGGACACAGTCCCAGGTGCGATaGGAGACATTCTGTAACAGGATCAGCTGCCCTTCC +
Preference number: 6 (lower is better)
Translates to: FLGLTRTQSQVR*ETFCNRISCPS
Trigger: GGAAGGGCAGCTGATCCTGTTACAGAATGTCTCCAATCGCACCTGGGACTGTGTCCTGGTCAGCCCGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 90 bp CATTCTGTAACAGGATCAGCTGCCCTTCCTCCCGGACACGTTCACTaGAGACGTAGTCAGTCAGGGACACCTCCTTCACCCGGAATGGGT +
Preference number: 6 (lower is better)
Translates to: HSVTGSAALPPGHVH*RRSQSGTPPSPGMG
Trigger: ACCCATTCCGGGTGAAGGAGGTGTCCCTGACTGACTACGTCTCAAGTGAACGTGTCCGGGAGGAAGGGCAGCTGATCCTGTTACAGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 90 bp AGTCTCTCCTTTGTTGTCAGTGACATCCATCTGGGCGTGGCAGTATaGTACCAGCTCCACCAGGATCTCACTGTCACCCTTGCGGCAGGC +
Preference number: 6 (lower is better)
Translates to: SLSFVVSDIHLGVAV*YQLHQDLTVTLAAG
Trigger: GCCTGCCGCAAGGGTGACAGTGAGATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAAGGAGAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 72 bp GACGTAGTCAGTCAGGGACACCTCCTTCACCCGGAATaGGTTCGAGAACAAGTTGGTGACGCTACTGAGGGT +
Preference number: 6 (lower is better)
Translates to: DVVSQGHLLHPE*VREQVGDATEG
Trigger: ACCCTCAGTAGCGTCACCAACTTGTTCTCGAACCCATTCCGGGTGAAGGAGGTGTCCCTGACTGACTACGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000172936.2
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 72 bp TACTCATGGATTTCAGTCATGGCATCCAGTGTGGGGTaGTTGGCCAGCAGCCCTCCATCCAGGAAGCGTCCA +
Preference number: 6 (lower is better)
Translates to: YSWISVMASSVG*LASSPPSRKRP
Trigger: TGGACGCTTCCTGGATGGAGGGCTGCTGGCCAACAACCCCACACTGGATGCCATGACTGAAATCCATGAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp TACCAGTTGGTCTGCAGGCTGAGTCGGTGGCTTCAGGTTAATGTTTaGGTTGCAGCGGGGCTCTCGAACGGCTTCGGGAGCATCGTAATT +
Preference number: 6 (lower is better)
Translates to: YQLVCRLSRWLQVNV*VAAGLSNGFGSIVI
Trigger: AATTACGATGCTCCCGAAGCCGTTCGAGAGCCCCGCTGCAACCAAAACATTAACCTGAAGCCACCGACTCAGCCTGCAGACCAACTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CTTGAGGGGACTTTCCTGTCCCCAGAGAAACGACTATaGAGAGTTTCTTCACCTTGTTGCCCTGGCCCTTGC +
Preference number: 6 (lower is better)
Translates to: LEGTFLSPEKRL*RVSSPCCPGPC
Trigger: GCAAGGGCCAGGGCAACAAGGTGAAGAAACTCTCCATAGTCGTTTCTCTGGGGACAGGAAAGTCCCCTCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp CCATCTGGATCTGTGCAACAGTCCACGACCATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTGGCCAGTTCCCAAGGGTTGCTGGGA +
Preference number: 6 (lower is better)
Translates to: PSGSVQQSTTILPSS*APKTVLASSQGLLG
Trigger: TCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACTGTTGCACAGATCCAGATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp GCCCATCTGGATCTGTGCAACAGTCCACGACCATCTTaGCCAGTTCCTTGGCTCCAAAAACAGTTTTGGCCA +
Preference number: 6 (lower is better)
Translates to: AHLDLCNSPRPS*PVPWLQKQFWP
Trigger: TGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACTGTTGCACAGATCCAGATGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp CCTGGTAATCAGCTTGCTGATCTTGGAGGCTATCAATaGAGGAGTCTCCCCAAAGTCGTTTGGGGTGTCCAC +
Preference number: 6 (lower is better)
Translates to: PGNQLADLGGYQ*RSLPKVVWGVH
Trigger: GTGGACACCCCAAACGACTTTGGGGAGACTCCTGCATTGATAGCCTCCAAGATCAGCAAGCTGATTACCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174021.8
CDS CCA 72 bp GTCTCTCCTTTGTTGTCAGTGACATCCATCTGGGCGTaGCAGTATTGTACCAGCTCCACCAGGATCTCACTG +
Preference number: 6 (lower is better)
Translates to: VSPLLSVTSIWA*QYCTSSTRISL
Trigger: CAGTGAGATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAAGGAGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 72 bp AAGGCAGTCTCTCCTTTGTTGTCAGTGACATCCATCTaGGCGTGGCAGTATTGTACCAGCTCCACCAGGATC +
Preference number: 6 (lower is better)
Translates to: KAVSPLLSVTSI*AWQYCTSSTRI
Trigger: GATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAAGGAGAGACTGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CCA 72 bp CCTTCATACGGAAGTACACACCACGCATATAGGCCATaGATTTACTGTGCAGAATGGCCAGGGCCAGGATGC +
Preference number: 6 (lower is better)
Translates to: PSYGSTHHAYRP*IYCAEWPGPGC
Trigger: GCATCCTGGCCCTGGCCATTCTGCACAGTAAATCCATGGCCTATATGCGTGGTGTGTACTTCCGTATGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp GGATCATGTCCTGATTGTACTCATGGATTTCAGTCATaGCATCCAGTGTGGGGTTGTTGGCCAGCAGCCCTC +
Preference number: 6 (lower is better)
Translates to: GSCPDCTHGFQS*HPVWGCWPAAL
Trigger: GAGGGCTGCTGGCCAACAACCCCACACTGGATGCCATGACTGAAATCCATGAGTACAATCAGGACATGATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp TCTGTGCAACAGTCCACGACCATCTTGCCCAGTTCCTaGGCTCCAAAAACAGTTTTGGCCAGTTCCCAAGGG +
Preference number: 6 (lower is better)
Translates to: SVQQSTTILPSS*APKTVLASSQG
Trigger: CCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACTGTTGCACAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp CAGTCCACGACCATCTTGCCCAGTTCCTTGGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTGCTGGGACGAAAGACATCTACACAG +
Preference number: 6 (lower is better)
Translates to: QSTTILPSSLAPKTV*ASSQGLLGRKTSTQ
Trigger: CTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGTCGTGGACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 90 bp CCAAGGGTTGCTGGGACGAAAGACATCTACACAGGTTACAGGCACTaGAGGGGACTTTCCTGTCCCCAGAGAAACGACTATGGAGAGTTT +
Preference number: 6 (lower is better)
Translates to: PRVAGTKDIYTGYRH*RGLSCPQRNDYGEF
Trigger: AAACTCTCCATAGTCGTTTCTCTGGGGACAGGAAAGTCCCCTCAAGTGCCTGTAACCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 72 bp CTGGGACGAAAGACATCTACACAGGTTACAGGCACTTaGGGGGACTTTCCTGTCCCCAGAGAAACGACTATG +
Preference number: 6 (lower is better)
Translates to: LGRKTSTQVTGT*GDFPVPRETTM
Trigger: CATAGTCGTTTCTCTGGGGACAGGAAAGTCCCCTCAAGTGCCTGTAACCTGTGTAGATGTCTTTCGTCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp AGGAGTCTCCCCAAAGTCGTTTGGGGTGTCCACTTCTaGCCCAAATACAATGAGGGCTTTGACCATCTCCAT +
Preference number: 6 (lower is better)
Translates to: RSLPKVVWGVHF*PKYNEGFDHLH
Trigger: ATGGAGATGGTCAAAGCCCTCATTGTATTTGGGGCAGAAGTGGACACCCCAAACGACTTTGGGGAGACTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CCATCTTGCCCAGTTCCTTGGCTCCAAAAACAGTTTTaGCCAGTTCCCAAGGGTTGCTGGGACGAAAGACAT +
Preference number: 6 (lower is better)
Translates to: PSCPVPWLQKQF*PVPKGCWDERH
Trigger: ATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp TTTGTTGTCAGTGACATCCATCTGGGCGTGGCAGTATaGTACCAGCTCCACCAGGATCTCACTGTCACCCTT +
Preference number: 6 (lower is better)
Translates to: FVVSDIHLGVAV*YQLHQDLTVTL
Trigger: AAGGGTGACAGTGAGATCCTGGTGGAGCTGGTACAATACTGCCACGCCCAGATGGATGTCACTGACAACAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173109.2
ENSMUST00000173163.8
ENSMUST00000173632.8
ENSMUST00000174021.8
CDS CAA 72 bp ACCATCTTGCCCAGTTCCTTGGCTCCAAAAACAGTTTaGGCCAGTTCCCAAGGGTTGCTGGGACGAAAGACA +
Preference number: 6 (lower is better)
Translates to: TILPSSLAPKTV*ASSQGLLGRKT
Trigger: TGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAAGGAACTGGGCAAGATGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS TCA 72 bp TTCACCTTGTTGCCCTGGCCCTTGCGGATCATGTCCTaGTTGTACTCATGGATTTCAGTCATGGCATCCAGT +
Preference number: 6 (lower is better)
Translates to: FTLLPWPLRIMS*LYSWISVMASS
Trigger: ACTGGATGCCATGACTGAAATCCATGAGTACAATCAGGACATGATCCGCAAGGGCCAGGGCAACAAGGTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS GCA 72 bp TGGCTCCAAAAACAGTTTTGGCCAGTTCCCAAGGGTTaGTGGGACGAAAGACATCTACACAGGTTACAGGCA +
Preference number: 6 (lower is better)
Translates to: WLQKQFWPVPKG*WDERHLHRLQA
Trigger: TGCCTGTAACCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CAA 72 bp TTGGCTCCAAAAACAGTTTTGGCCAGTTCCCAAGGGTaGCTGGGACGAAAGACATCTACACAGGTTACAGGC +
Preference number: 6 (lower is better)
Translates to: LAPKTVLASSQG*LGRKTSTQVTG
Trigger: GCCTGTAACCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAGCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8
CDS CCA 72 bp CTCCAAAAACAGTTTTGGCCAGTTCCCAAGGGTTGCTaGGACGAAAGACATCTACACAGGTTACAGGCACTT +
Preference number: 6 (lower is better)
Translates to: LQKQFWPVPKGC*DERHLHRLQAL
Trigger: AAGTGCCTGTAACCTGTGTAGATGTCTTTCGTCCCAGCAACCCTTGGGAACTGGCCAAAACTGTTTTTGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000047816.15
ENSMUST00000166977.9
ENSMUST00000172403.9
ENSMUST00000173163.8
ENSMUST00000174021.8