RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLA2G3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034579

Ensembl transcript IDs: ENSMUST00000044682.7, ENSMUST00000064265.13

Found 231 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCAAAGAATGTTTCTCAAGGGACCTCTGTCACGTGATCAGTCAATaGGACCCCACCCAAGCCTGGCCTCTTGGGAACTCTGGGACAGGG +
Preference number: 1 (lower is better)
Translates to: AKECFSRDLCHVISQ*DPTQAWPLGNSGTG
Trigger: CCCTGTCCCAGAGTTCCCAAGAGGCCAGGCTTGGGTGGGGTCCCATTGACTGATCACGTGACAGAGGTCCCTTGAGAAACATTCTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR TCA 90 bp GAAGTTACCTGGCAAGGTCTAAGCCCAAGGCATCAGAATAGCCTCTaGACACCACATCCCGGCACAGAGGGGTTGTGTCACCAGTTCAAG +
Preference number: 1 (lower is better)
Translates to: EVTWQGLSPRHQNSL*TPHPGTEGLCHQFK
Trigger: CTTGAACTGGTGACACAACCCCTCTGTGCCGGGATGTGGTGTTCAGAGGCTATTCTGATGCCTTGGGCTTAGACCTTGCCAGGTAACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CCA 90 bp CCCTCCTCACCCTGGATTCAGGTACAGGCATTTCTCTTGTATCCTTaGTTTCCCACCTACGGCTTTAGGCCTCACTGTAAAGTGCTGGGG +
Preference number: 1 (lower is better)
Translates to: PSSPWIQVQAFLLYP*FPTYGFRPHCKVLG
Trigger: CCCCAGCACTTTACAGTGAGGCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR TCA 90 bp AAACTGCTCTTGCAAAGAACTCAAGTTCATTTTCCAGCATTCACGTaGGGTATTTCACAATCACCTACAACTCCAGATTCAGGAGATCTG +
Preference number: 1 (lower is better)
Translates to: KLLLQRTQVHFPAFT*GISQSPTTPDSGDL
Trigger: CAGATCTCCTGAATCTGGAGTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTTCTTTGCAAGAGCAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR GCA 90 bp GCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGGCAGGAGGTCCAGGCTGGTaGCCAAGCTGCTGTTACTGT +
Preference number: 2 (lower is better)
Translates to: ALRPMWRREVPCPNSSWAGGPGW*PSCCYC
Trigger: ACAGTAACAGCAGCTTGGGCACCAGCCTGGACCTCC...TGCCCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR GCA 90 bp CTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCAGACACCTGGGGCTTGGGATaGAGCTCAGTGGTAGGAGAC +
Preference number: 2 (lower is better)
Translates to: LRLPLRCRCAPSLVAEADTWGLG*SSVVGD
Trigger: GTCTCCTACCACTGAGCTGCATCCCAAGCCCCAGGT...GTCTGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR TCA 90 bp TTCAGGAGATCTGATGCCTCTAGCCTCTGTGGGCACCTACACACATGCACGCACGCTCCTTCAAACTCATaGTTCTCCTGCCTCAGCTCC +
Preference number: 2 (lower is better)
Translates to: FRRSDASSLCGHLHTCTHAPSNS*FSCLSS
Trigger: GGAGCTGAGGCAGGAGAATCATGAGTTTGAAGGAGC...GTGCGTGCATGTGTGTAGGTGCCCACAGAGGCTAGAGGCATCAGATCTCCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR GCA 90 bp GATGTCATACGCCTGCAATTCCAGCATTTTGGAGGTAGAGGAAAGTGGGCCAGAGGCCTCACTGTAAAGTaGTGGGGCTCAGAAAGGCAG +
Preference number: 2 (lower is better)
Translates to: DVIRLQFQHFGGRGKWARGLTVK*WGSERQ
Trigger: CTGCCTTTCTGAGCCCCAGCACTTTACAGTGAGGCC...TCTGGCCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CCA 90 bp TTCAGGTACAGGCATTTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCGAAGGAGGTCCAGGCTaGTGCCCAAGCTGCTGTTAC +
Preference number: 2 (lower is better)
Translates to: FRYRHFSCILGFPPTALGEGGPG*CPSCCY
Trigger: GTAACAGCAGCTTGGGCACCAGCCTGGACCTCCTTC...GCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAAATGCCTGTACCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR TCA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTCCAATATTTGGACCTTaGGGTTCCTTCCATCAACCC +
Preference number: 2 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPPIFGP*GSFHQP
Trigger: GGGTTGATGGAAGGAACCTCAAGGTCCAAATATTGG...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR GCA 90 bp TTCAGGAGATCTGATGCCTCTAGCCTCTGTGGGCACCTACACACATGCACGCACATTTCCCTTAAGCAGTaGAGTAAAGCAACAGCCTTC +
Preference number: 2 (lower is better)
Translates to: FRRSDASSLCGHLHTCTHISLKQ*SKATAF
Trigger: GAAGGCTGTTGCTTTACTGCACTGCTTAAGGGAAAT...GTGCGTGCATGTGTGTAGGTGCCCACAGAGGCTAGAGGCATCAGATCTCCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR CCA 90 bp ACACCCTGGTTTCTCTCCCCAGTATCACCTAAAACTTGGTGTGATGTCATACGCTACCTCCTGGATTCCTaGAATCAGCCACTCCCCTTT +
Preference number: 2 (lower is better)
Translates to: TPWFLSPVSPKTWCDVIRYLLDS*NQPLPF
Trigger: AAAGGGGAGTGGCTGATTCCAGGAATCCAGGAGGTA...GCGTATGACATCACACCAAGTTTTAGGTGATACTGGGGAGAGAAACCAGGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CCA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACGGTTCCCATACCTCCTaGATTCCTGGAATCAGCCAC +
Preference number: 2 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNGSHTS*IPGISH
Trigger: GTGGCTGATTCCAGGAATCCAGGAGGTATGGGAACC...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CAA 90 bp CACCTAAAACTTGGTGTGATGTCATACGCCTGCAATTCCAGCATTTaGGAGGTAGAGGAAAGTGGGCCAGAAGTTCAAGGTTACCCTCCT +
Preference number: 2 (lower is better)
Translates to: HLKLGVMSYACNSSI*EVEESGPEVQGYPP
Trigger: AGGAGGGTAACCTTGAACTTCTGGCCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATCACACCAAGTTTTAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CCA 90 bp GTTAAGATTGCAGGCATGTGCCACCACACTGTAGCCCTTAGTCAGGGACCTCACCTAATTACAGCATTTTaGAGGCTGAGGAAGAAGAAT +
Preference number: 2 (lower is better)
Translates to: VKIAGMCHHTVALSQGPHLITAF*RLRKKN
Trigger: ATTCTTCTTCCTCAGCCTCCAAAATGCTGTAATTAG...GTGAGGTCCCTGACTAAGGGCTACAGTGTGGTGGCACATGCCTGCAATCTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR CCA 90 bp CCCTTAAGCAGTGCAGTAAAGCAACAGCCTTCATGTCATTTGCATTACATTATTGGAACCAAACAGACCTaGATGCTCAGGATGACGTCA +
Preference number: 2 (lower is better)
Translates to: PLSSAVKQQPSCHLHYIIGTKQT*MLRMTS
Trigger: TGACGTCATCCTGAGCATCCAGGTCTGTTTGGTTCC...AATAATGTAATGCAAATGACATGAAGGCTGTTGCTTTACTGCACTGCTTAAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR GCA 90 bp GCAAAGAACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTTTGATAAGGAGCCCTaGAGGCCAAAGAATGTTTCT +
Preference number: 2 (lower is better)
Translates to: AKNSSSFSSIHVRYFTITFDKEP*RPKNVS
Trigger: AGAAACATTCTTTGGCCTGCAGGGCTCCTTATCAAA...GGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTTCTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR CAA 90 bp ACTATTGAGCTAAGCATGGTGGCAAATCTCTCTAATTACAGCATTTaGGAGGCTGAGGAAGAAGAATTTCAAGTTCAAATCCAGTCTGGA +
Preference number: 2 (lower is better)
Translates to: TIELSMVANLSNYSI*EAEEEEFQVQIQSG
Trigger: TCCAGACTGGATTTGAACTTGAAATTCTTCTTCCTCAGCCTCCAAAATGCTGTAATTAGAGAGATTTGCCACCATGCTTAGCTCAATAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR CCA 72 bp TGTCACGTGATCAGTCAATGGGACCCCACCCAAGCCTaGCCTCTTGGGAACTCTGGGACAGGGATGGGGTGG +
Preference number: 3 (lower is better)
Translates to: CHVISQWDPTQA*PLGNSGTGMGW
Trigger: CCACCCCATCCCTGTCCCAGAGTTCCCAAGAGGCCAGGCTTGGGTGGGGTCCCATTGACTGATCACGTGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR CCA 72 bp TACCTTCTCTTTCAGAGGAGGGCACTAAGGCCCATGTaGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGG +
Preference number: 3 (lower is better)
Translates to: YLLFQRRALRPM*RREVPCPNSSW
Trigger: CCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCTCCTCTGAAAGAGAAGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CAA 90 bp GCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGGCAGTACAGGCATTTCTCTaGTATCCTTGGTTTCCCACC +
Preference number: 3 (lower is better)
Translates to: ALRPMWRREVPCPNSSWAVQAFL*YPWFPT
Trigger: GGTGGGAAACCAAGGATACAAGAGAAATGCCTGTAC...TGCCCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR TCA 72 bp TGGCAAGGTCTAAGCCCAAGGCATCAGAATAGCCTCTaGACACCACATCCCGGCACAGAGGGGTTGTGTCAC +
Preference number: 3 (lower is better)
Translates to: WQGLSPRHQNSL*TPHPGTEGLCH
Trigger: GTGACACAACCCCTCTGTGCCGGGATGTGGTGTTCAGAGGCTATTCTGATGCCTTGGGCTTAGACCTTGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CCA 72 bp TGTTTCTCAAGGGACCTCTGTCACGTGATCAGTCAATaGGACCCCACCCAAGCCTGGCCTCTTGGGAACTCT +
Preference number: 3 (lower is better)
Translates to: CFSRDLCHVISQ*DPTQAWPLGNS
Trigger: AGAGTTCCCAAGAGGCCAGGCTTGGGTGGGGTCCCATTGACTGATCACGTGACAGAGGTCCCTTGAGAAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR CAA 90 bp AGCCTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCACCTCAAGTGTTAAGATaGCAGGCATGTGCCACCACA +
Preference number: 3 (lower is better)
Translates to: SLRLPLRCRCAPSLVAEAPQVLR*QACATT
Trigger: TGTGGTGGCACATGCCTGCAATCTTAACACTTGAGG...TGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR GCA 72 bp AGGGCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTaGCCTAACTCCTCATGGGCACAGAAAAGATTTCAA +
Preference number: 3 (lower is better)
Translates to: RALRPMWRREVP*PNSSWAQKRFQ
Trigger: TTGAAATCTTTTCTGTGCCCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR GCA 72 bp TGCCTCAGCTCCTCAAGTGTTAAGATTGCAGGCATGTaGCACCACACTGTAGCCCTTAGTCAGGGACCTCAC +
Preference number: 3 (lower is better)
Translates to: CLSSSSVKIAGM*HHTVALSQGPH
Trigger: GTGAGGTCCCTGACTAAGGGCTACAGTGTGGTGGCACATGCCTGCAATCTTAACACTTGAGGAGCTGAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR GCA 72 bp TCTGATGCCTCTAGCCTCTGTGGGCACCTACACACATaGACGCACCTACCTCCTCATGCACAGAGTCTGAAA +
Preference number: 3 (lower is better)
Translates to: SDASSLCGHLHT*THLPPHAQSLK
Trigger: TTTCAGACTCTGTGCATGAGGAGGTAGGTGCGTGCATGTGTGTAGGTGCCCACAGAGGCTAGAGGCATCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR-3UTR CAA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTTCCATCAGAGCCATGTaGTTCCTCAAAGAAGAGACC +
Preference number: 3 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPSIRAM*FLKEET
Trigger: GGTCTCTTCTTTGAGGAACAACATGGCTCTGATGGA...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CCA 72 bp TCTCCTGTAAAGAACGTGGGAACACCCTCCTCACCCTaGATTCAGGTACAGGCATTTCTCTTGTATCCTTGG +
Preference number: 3 (lower is better)
Translates to: SPVKNVGTPSSP*IQVQAFLLYPW
Trigger: CCAAGGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAGGGTGTTCCCACGTTCTTTACAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CAA 90 bp ACACCCTGGTTTCTCTCCCCAGTATCACCTAAAACTTGGTGTGATGTCATACGCGATGCGGTCCAATATTaGGACCTTGAGGTTCCTTCC +
Preference number: 3 (lower is better)
Translates to: TPWFLSPVSPKTWCDVIRDAVQY*DLEVPS
Trigger: GGAAGGAACCTCAAGGTCCAAATATTGGACCGCATC...GCGTATGACATCACACCAAGTTTTAGGTGATACTGGGGAGAGAAACCAGGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR TCA 72 bp TCCTGGAATCAGCCACTCCCCTTTTCTATCTGTGTATaGAGTTACCTGGCAAGGTCTAAGCCCAAGGCATCA +
Preference number: 3 (lower is better)
Translates to: SWNQPLPFSICV*SYLARSKPKAS
Trigger: TGATGCCTTGGGCTTAGACCTTGCCAGGTAACTTCATACACAGATAGAAAAGGGGAGTGGCTGATTCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CCA 72 bp AGCCACTCCCCTTTTCTATCTGTGTATGAAGTTACCTaGCAAGGTCTAAGCCCAAGGCATCAGAATAGCCTC +
Preference number: 3 (lower is better)
Translates to: SHSPFLSVYEVT*QGLSPRHQNSL
Trigger: GAGGCTATTCTGATGCCTTGGGCTTAGACCTTGCCAGGTAACTTCATACACAGATAGAAAAGGGGAGTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CAA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACATTTCTCTTGTATCCTaGGTTTCCCACCTACGGCTT +
Preference number: 3 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNISLVS*VSHLRL
Trigger: AAGCCGTAGGTGGGAAACCAAGGATACAAGAGAAAT...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR GCA 72 bp CAGTATCACCTAAAACTTGGTGTGATGTCATACGCCTaGAATTCCAGCATTTTGGAGGTAGAGGAAAGTGGG +
Preference number: 3 (lower is better)
Translates to: QYHLKLGVMSYA*NSSILEVEESG
Trigger: CCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATCACACCAAGTTTTAGGTGATACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CCA 72 bp ACACCCTGGTTTCTCTCCCCAGTATCACCTAAAACTTaGTGTGATGTCATACGCCTGCAATTCCAGCATTTT +
Preference number: 3 (lower is better)
Translates to: TPWFLSPVSPKT*CDVIRLQFQHF
Trigger: AAAATGCTGGAATTGCAGGCGTATGACATCACACCAAGTTTTAGGTGATACTGGGGAGAGAAACCAGGGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR CCA 72 bp ATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATaGGCACAGAAAAGATTTCAATTTAGAATTAGAACA +
Preference number: 3 (lower is better)
Translates to: MWRREVPCPNSS*AQKRFQFRIRT
Trigger: TGTTCTAATTCTAAATTGAAATCTTTTCTGTGCCCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
3UTR-3UTR CAA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACTCTGGATTTCTTGGTTaGATAAGGAGCCCTGCAGGC +
Preference number: 3 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNSGFLG*IRSPAG
Trigger: GCCTGCAGGGCTCCTTATCAAACCAAGAAATCCAGA...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR TCA 72 bp TTGCAAAGAACTCAAGTTCATTTTCCAGCATTCACGTaGGGTATTTCACAATCACCTACAACTCCAGATTCA +
Preference number: 3 (lower is better)
Translates to: LQRTQVHFPAFT*GISQSPTTPDS
Trigger: TGAATCTGGAGTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTTCTTTGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR TCA 72 bp ACTTTATTCTTCCAAGAAATGTTTAGGGCATCAACCTaGAATTTGAAGAACAAACTGCTCTTGCAAAGAACT +
Preference number: 3 (lower is better)
Translates to: TLFFQEMFRAST*NLKNKLLLQRT
Trigger: AGTTCTTTGCAAGAGCAGTTTGTTCTTCAAATTTCAGGTTGATGCCCTAAACATTTCTTGGAAGAATAAAGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp CACCACATCCCGGCACAGAGGGGTTGTGTCACCAGTTCAAGGTCACCAAGTACAGGGCTCCACAGGCTGTaGCAGAGCCCCACCTGTGCC +
Preference number: 4 (lower is better)
Translates to: HHIPAQRGCVTSSRSPSTGLHRL*QSPTCA
Trigger: GGCACAGGTGGGGCTCTGGCACAGCCTGTGGAGCCC...TGTACTTGGTGACCTTGAACTGGTGACACAACCCCTCTGTGCCGGGATGTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp AGGGCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGACACTGGCTGTAGAATaGCATGGTGCTCCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: RALRPMWRREVPCPNSSWTLAVE*HGAPWG
Trigger: CCCCCAGGGAGCACCATGTCATTCTACAGCCAGTGT...CCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp AGGGCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGACTCGGTGGGCACTTTaGTGTTTTGGGCCATCCTGG +
Preference number: 4 (lower is better)
Translates to: RALRPMWRREVPCPNSSWTRWAL*CFGPSW
Trigger: CCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGT...CCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp AGCCTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCAACTGGCTCTGCAGAGTaGCCAGTGCTCTCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: SLRLPLRCRCAPSLVAEATGSAE*PVLSAA
Trigger: CGCTGCAGAGAGCACTGGCCACTCTGCAGAGCCAGT...TGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCAGACGTGTTTGCTGGGTGCTaGGCTTTGGGGGCTGGGAGT +
Preference number: 4 (lower is better)
Translates to: LRLPLRCRCAPSLVAEADVFAGC*ALGAGS
Trigger: ACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAACAC...GTCTGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp ATCCCGGCACAGAGGGGTTGTGTCACCAGTTCAAGGTCACCAAGTACAGCGGGATGGAGTCGGCTCTTGTaGAGCCTCTGCAAGTGCCGA +
Preference number: 4 (lower is better)
Translates to: IPAQRGCVTSSRSPSTAGWSRLL*SLCKCR
Trigger: TCGGCACTTGCAGAGGCTTCACAAGAGCCGACTCCA...TCCCGCTGTACTTGGTGACCTTGAACTGGTGACACAACCCCTCTGTGCCGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp AGCCTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCAGGCCTTGGGCATCTTTaGCCAAGAAGCTCAGGGAGC +
Preference number: 4 (lower is better)
Translates to: SLRLPLRCRCAPSLVAEAGLGHL*PRSSGS
Trigger: GCTCCCTGAGCTTCTTGGGCAAAGATGCCCAAGGCC...TGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp AGGGCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGGTGCTCTCTGTCAGGTaGTCCACTCTGCTCTATTGC +
Preference number: 4 (lower is better)
Translates to: RALRPMWRREVPCPNSSWVLSVR*STLLYC
Trigger: GCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCAC...CCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TTTCTCAAGGGACCTCTGTCACGTGATCAGTCAATGGGACCCCACCCAAGCCTGTCTGTGGGTGTTTGCTaGGTGCTGGGCTTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: FLKGPLSRDQSMGPHPSLSVGVC*VLGFGG
Trigger: GCCCCCAAAGCCCAGCACCCAGCAAACACCCACAGA...CAGGCTTGGGTGGGGTCCCATTGACTGATCACGTGACAGAGGTCCCTTGAGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AGGGCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGGGATCATATCAGGTCTaGAGGAGATGGCAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: RALRPMWRREVPCPNSSWGSYQV*RRWQGS
Trigger: AGACCCCTGCCATCTCCTCCAGACCTGATATGATCC...CCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp AGCCTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCACTGGAAGCCCAGATGTaGAACTCCTGGCTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: SLRLPLRCRCAPSLVAEALEAQM*NSWLAS
Trigger: AGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAG...TGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp TTTCTCAAGGGACCTCTGTCACGTGATCAGTCAATGGGACCCCACCCAAGCCTGAGAAGGCCACGCCCATaGTGTCGGAGATGGAGTCAC +
Preference number: 4 (lower is better)
Translates to: FLKGPLSRDQSMGPHPSLRRPRP*CRRWSH
Trigger: GTGACTCCATCTCCGACATCATGGGCGTGGCCTTCT...CAGGCTTGGGTGGGGTCCCATTGACTGATCACGTGACAGAGGTCCCTTGAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp AATAATGACCCCCACCTCTACCTTCTCTTTCAGAGGAGGGCACTAAGGCCCATGTGGGTGTTTGCTGGGTaGTGGGCTTTGGGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: NNDPHLYLLFQRRALRPMWVFAG*WALGAG
Trigger: CCCAGCCCCCAAAGCCCAGCACCCAGCAAACACCCA...CATGGGCCTTAGTGCCCTCCTCTGAAAGAGAAGGTAGAGGTGGGGGTCATTATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp CACCACATCCCGGCACAGAGGGGTTGTGTCACCAGTTCAAGGTCACCAAGTACATGGGGCTTGATCTGGTaGTCACACTGGTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: HHIPAQRGCVTSSRSPSTWGLIW*SHWSRW
Trigger: CCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCA...TGTACTTGGTGACCTTGAACTGGTGACACAACCCCTCTGTGCCGGGATGTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp AGGGCACTAAGGCCCATGTGGAGGAGGGAGGTCCCTTGCCCTAACTCCTCATGGCTCTGGAACAGCCTTTaGCCTCAGCACAGTCAAGTT +
Preference number: 4 (lower is better)
Translates to: RALRPMWRREVPCPNSSWLWNSL*PQHSQV
Trigger: AACTTGACTGTGCTGAGGGCAAAGGCTGTTCCAGAG...CCATGAGGAGTTAGGGCAAGGGACCTCCCTCCTCCACATGGGCCTTAGTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp AGCCTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCATGGGAGTATATGAGGTaGCCTCAGCCTTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SLRLPLRCRCAPSLVAEAWEYMR*PQPSRR
Trigger: CCTCCTGGAAGGCTGAGGCCACCTCATATACTCCCA...TGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AGTCTCTCAGAATATAGCAACACCAGGAAGGAGGTCCAGGCTGGTGCCCAAGCTTGGGCCCCTCTTCTGTaGGTGTTTGCTGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: SLSEYSNTRKEVQAGAQAWAPLL*VFAGCW
Trigger: CCAGCACCCAGCAAACACCCACAGAAGAGGGGCCCA...AGCTTGGGCACCAGCCTGGACCTCCTTCCTGGTGTTGCTATATTCTGAGAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp CACCACATCCCGGCACAGAGGGGTTGTGTCACCAGTTCAAGGTCACCAAGTACACAGGTCTGGAGGAGATaGCAGGGGTCTGGAAAGGTG +
Preference number: 4 (lower is better)
Translates to: HHIPAQRGCVTSSRSPSTQVWRR*QGSGKV
Trigger: CACCTTTCCAGACCCCTGCCATCTCCTCCAGACCTG...TGTACTTGGTGACCTTGAACTGGTGACACAACCCCTCTGTGCCGGGATGTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp TGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATAGGTAAGACATGCTGCAAAGGCTCATaGGCACAGAGGGCCCTGAAC +
Preference number: 4 (lower is better)
Translates to: WGLGCSSVVGDFASIGKTCCKGS*AQRALN
Trigger: GTTCAGGGCCCTCTGTGCTCATGAGCCTTTGCAGCA...TGTCTTACCTATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTGCGTCACAGTCGCAGTaGGAGATGGTGTGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPASQSQ*EMVWKR
Trigger: CCGCTTCCACACCATCTCTCACTGCGACTGTGACGC...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp GTTAAGATTGCAGGCATGTGCCACCACACTGTAGCCCTTAGTCAGGGACCTCACTGGGGCTTGATCTGGTaGTCACACTGGTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: VKIAGMCHHTVALSQGPHWGLIW*SHWSRW
Trigger: CCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCA...GTGAGGTCCCTGACTAAGGGCTACAGTGTGGTGGCACATGCCTGCAATCTTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp TGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATAGGTAAGACAACAGCGTGCCAGGAATaGTCCAGCCTCTCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: WGLGCSSVVGDFASIGKTTACQE*SSLSSF
Trigger: GAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGT...TGTCTTACCTATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CGTGGGAACACCCTCCTCACCCTGGATTCAGGTACAGGCATTTCTCTTGTATCCACAGCGTGCCAGGAATaGTCCAGCCTCTCCTCCTTC +
Preference number: 4 (lower is better)
Translates to: RGNTLLTLDSGTGISLVSTACQE*SSLSSF
Trigger: GAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGT...GGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAGGGTGTTCCCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTGCCACACAGGCCTCCTaGTCCTTCAGCACAAAGCAG +
Preference number: 4 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPATQAS*SFSTKQ
Trigger: CTGCTTTGTGCTGAAGGAGCAGGAGGCCTGTGTGGC...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TTCAGGAGATCTGATGCCTCTAGCCTCTGTGGGCACCTACACACATGCACGCACGGATCATATCAGGTCTaGAGGAGATGGCAGGGGTCT +
Preference number: 4 (lower is better)
Translates to: FRRSDASSLCGHLHTCTHGSYQV*RRWQGS
Trigger: AGACCCCTGCCATCTCCTCCAGACCTGATATGATCC...GTGCGTGCATGTGTGTAGGTGCCCACAGAGGCTAGAGGCATCAGATCTCCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CGTGGGAACACCCTCCTCACCCTGGATTCAGGTACAGGCATTTCTCTTGTATCCCAGATGTGGAACTCCTaGCTGGCCTCTGGGGATCAT +
Preference number: 4 (lower is better)
Translates to: RGNTLLTLDSGTGISLVSQMWNS*LASGDH
Trigger: ATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTG...GGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAGGGTGTTCCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTCTGGAAGCCCAGATGTaGAACTCCTGGCTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPLEAQM*NSWLAS
Trigger: AGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAG...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp CGTGGGAACACCCTCCTCACCCTGGATTCAGGTACAGGCATTTCTCTTGTATCCGCACTGTTGAGCAGGTaGAACTTGGTTTCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: RGNTLLTLDSGTGISLVSALLSR*NLVSWG
Trigger: GCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGC...GGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAGGGTGTTCCCACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACCCTGCAGGCGGGCTGTaGAGCCTCAGGAAACGTGCC +
Preference number: 4 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNPAGGL*SLRKRA
Trigger: GGCACGTTTCCTGAGGCTCCACAGCCCGCCTGCAGG...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp CACCACATCCCGGCACAGAGGGGTTGTGTCACCAGTTCAAGGTCACCAAGTACAGAACACGCCCAGTTCTaGGGCATTTTCAGCAGAGTT +
Preference number: 4 (lower is better)
Translates to: HHIPAQRGCVTSSRSPSTEHAQF*GIFSRV
Trigger: AACTCTGCTGAAAATGCCTCAGAACTGGGCGTGTTC...TGTACTTGGTGACCTTGAACTGGTGACACAACCCCTCTGTGCCGGGATGTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp GATGTCATACGCCTGCAATTCCAGCATTTTGGAGGTAGAGGAAAGTGGGCCAGAAGAAGGCCACGCCCATaGTGTCGGAGATGGAGTCAC +
Preference number: 4 (lower is better)
Translates to: DVIRLQFQHFGGRGKWARRRPRP*CRRWSH
Trigger: GTGACTCCATCTCCGACATCATGGGCGTGGCCTTCT...TCTGGCCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp AATGTTACCTGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATAACTCGGTGGGCACTTTaGTGTTTTGGGCCATCCTGG +
Preference number: 4 (lower is better)
Translates to: NVTWGLGCSSVVGDFASITRWAL*CFGPSW
Trigger: CCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGT...TATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCAGGTAACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp AATGTTACCTGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATACTGAGACCTTTGACATaGCTCCCACTGGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: NVTWGLGCSSVVGDFASILRPLT*LPLALQ
Trigger: CTGCAGAGCCAGTGGGAGGCATGTCAAAGGTCTCAG...TATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCAGGTAACATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AGCCTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCAAATAATGCCAGGCCTTaGGCATCTTTGCCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: SLRLPLRCRCAPSLVAEANNARP*ASLPKK
Trigger: CTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATT...TGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTTGGGAGTATATGAGGTaGCCTCAGCCTTCCAGGAGG +
Preference number: 4 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPWEYMR*PQPSRR
Trigger: CCTCCTGGAAGGCTGAGGCCACCTCATATACTCCCA...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCCTCACTGTAAAGTGCTCTGTGGGTGTTTGCTaGGTGCTGGGCTTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: FSCILGFPPTALGLTVKCSVGVC*VLGFGG
Trigger: GCCCCCAAAGCCCAGCACCCAGCAAACACCCACAGA...GCACTTTACAGTGAGGCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TTCAGGTACAGGCATTTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCGGCTTGTGTCTGCTGTaGGCCCCTCTTCTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: FRYRHFSCILGFPPTALGGLCLL*APLLWV
Trigger: CACCCACAGAAGAGGGGCCCACAGCAGACACAAGCC...GCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAAATGCCTGTACCTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp AATAATGACCCCCACCTCTACCTTCTCTTTCAGAGGAGGGCACTAAGGCCCATGTTGTGCTGTGACGTCTaGCTTGTGTCTGCTGTGGGC +
Preference number: 4 (lower is better)
Translates to: NNDPHLYLLFQRRALRPMLCCDV*LVSAVG
Trigger: GCCCACAGCAGACACAAGCCAGACGTCACAGCACAA...CATGGGCCTTAGTGCCCTCCTCTGAAAGAGAAGGTAGAGGTGGGGGTCATTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp GATGTCATACGCCTGCAATTCCAGCATTTTGGAGGTAGAGGAAAGTGGGCCAGACTCCTGGCTGGCCTCTaGGGATCATATCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: DVIRLQFQHFGGRGKWARLLAGL*GSYQVW
Trigger: CCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAG...TCTGGCCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp TCAGACAGACAAACAATAATGACCCCCACCTCTACCTTCTCTTTCAGAGGAGGGTGCTGCAAAGGCTCATaGGCACAGAGGGCCCTGAAC +
Preference number: 4 (lower is better)
Translates to: SDRQTIMTPTSTFSFRGGCCKGS*AQRALN
Trigger: GTTCAGGGCCCTCTGTGCTCATGAGCCTTTGCAGCA...CCCTCCTCTGAAAGAGAAGGTAGAGGTGGGGGTCATTATTGTTTGTCTGTCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp CAAACTCATGATTCTCCTGCCTCAGCTCCTCAAGTGTTAAGATTGCAGGCATGTGCGTCACAGTCGCAGTaGGAGATGGTGTGGAAGCGG +
Preference number: 4 (lower is better)
Translates to: QTHDSPASAPQVLRLQACASQSQ*EMVWKR
Trigger: CCGCTTCCACACCATCTCTCACTGCGACTGTGACGC...ACATGCCTGCAATCTTAACACTTGAGGAGCTGAGGCAGGAGAATCATGAGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp CGTGGGAACACCCTCCTCACCCTGGATTCAGGTACAGGCATTTCTCTTGTATCCCTGTGCCTTTATCCCTaGAATGGAGTCGGCTCTTGT +
Preference number: 4 (lower is better)
Translates to: RGNTLLTLDSGTGISLVSLCLYP*NGVGSC
Trigger: ACAAGAGCCGACTCCATTTCAGGGATAAAGGCACAG...GGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAGGGTGTTCCCACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp TCAGACAGACAAACAATAATGACCCCCACCTCTACCTTCTCTTTCAGAGGAGGGGGCCTTGGGCATCTTTaGCCAAGAAGCTCAGGGAGC +
Preference number: 4 (lower is better)
Translates to: SDRQTIMTPTSTFSFRGGGLGHL*PRSSGS
Trigger: GCTCCCTGAGCTTCTTGGGCAAAGATGCCCAAGGCC...CCCTCCTCTGAAAGAGAAGGTAGAGGTGGGGGTCATTATTGTTTGTCTGTCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp CTCCTCACCCTGGATTCAGGTACAGGCATTTCTCTTGTATCCTTGGTTTCCCACCTGAGACCTTTGACATaGCTCCCACTGGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: LLTLDSGTGISLVSLVSHLRPLT*LPLALQ
Trigger: CTGCAGAGCCAGTGGGAGGCATGTCAAAGGTCTCAG...GTGGGAAACCAAGGATACAAGAGAAATGCCTGTACCTGAATCCAGGGTGAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp ACCAACCAAGTCTCTCAGAATATAGCAACACCAGGAAGGAGGTCCAGGCTGGTGATTTCTTCTGTCCCCTaGGTCTCCAGATTGCCTGGG +
Preference number: 4 (lower is better)
Translates to: TNQVSQNIATPGRRSRLVISSVP*VSRLPG
Trigger: CCCAGGCAATCTGGAGACGCAGGGGACAGAAGAAAT...CACCAGCCTGGACCTCCTTCCTGGTGTTGCTATATTCTGAGAGACTTGGTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCCTCACTGTAAAGTGCCTGGGTGCTGGGCTTTaGGGGCTGGGAGTATATGAG +
Preference number: 4 (lower is better)
Translates to: FSCILGFPPTALGLTVKCLGAGL*GLGVYE
Trigger: CTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAG...GCACTTTACAGTGAGGCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp GGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACGTGGGAACGTGTTTGCTGGGTGCTaGGCTTTGGGGGCTGGGAGT +
Preference number: 4 (lower is better)
Translates to: GRTQKLFKEGVSCKERGNVFAGC*ALGAGS
Trigger: ACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAACAC...GTTCCCACGTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCCTCACTGTAAAGTGCGGCTGTAGAATGACATaGTGCTCCCTGGGGGCTCCA +
Preference number: 4 (lower is better)
Translates to: FSCILGFPPTALGLTVKCGCRMT*CSLGAP
Trigger: TGGAGCCCCCAGGGAGCACCATGTCATTCTACAGCC...GCACTTTACAGTGAGGCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp AAGATTAGTTCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGAGGTACTGTCCCAGTaGCGGGTATGGGAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: KISSGQEGPRNYLKKGSPEVLSQ*RVWEPS
Trigger: AGAGGGCTCCCATACCCGTCACTGGGACAGTACCTC...AGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGAACTAATCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp ACACCCTGGTTTCTCTCCCCAGTATCACCTAAAACTTGGTGTGATGTCATACGCTGGTTTCCTGGGGCTTaGTCTGGTGCTCACACTGGT +
Preference number: 4 (lower is better)
Translates to: TPWFLSPVSPKTWCDVIRWFPGA*SGAHTG
Trigger: ACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCA...GCGTATGACATCACACCAAGTTTTAGGTGATACTGGGGAGAGAAACCAGGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp TTCAGGTACAGGCATTTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCTCTTCTGTGGGTGTTTaGTGGGTGCTGGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: FRYRHFSCILGFPPTALGSSVGV*WVLGFG
Trigger: CCCAAAGCCCAGCACCCAGCAAACACCCACAGAAGA...GCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAAATGCCTGTACCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp TGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATAGGTAAGACAACACTGAGACTCCTTTaGCCTCAGCACAGTCAAGTT +
Preference number: 4 (lower is better)
Translates to: WGLGCSSVVGDFASIGKTTLRLL*PQHSQV
Trigger: AACTTGACTGTGCTGAGGGCAAAGGAGTCTCAGTGT...TGTCTTACCTATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp TTCAGGTACAGGCATTTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCTGTAGAATGACATGGTaGTCCCTGGGGGCTCCACAG +
Preference number: 4 (lower is better)
Translates to: FRYRHFSCILGFPPTALGCRMTW*SLGAPQ
Trigger: CTGTGGAGCCCCCAGGGAGCACCATGTCATTCTACA...GCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAAATGCCTGTACCTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp CAAACTCATGATTCTCCTGCCTCAGCTCCTCAAGTGTTAAGATTGCAGGCATGTCAGGTCTGGAGGAGATaGCAGGGGTCTGGAAAGGTG +
Preference number: 4 (lower is better)
Translates to: QTHDSPASAPQVLRLQACQVWRR*QGSGKV
Trigger: CACCTTTCCAGACCCCTGCCATCTCCTCCAGACCTG...ACATGCCTGCAATCTTAACACTTGAGGAGCTGAGGCAGGAGAATCATGAGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CCTAGGCTCCTTCAAACTCATGATTCTCCTGCCTCAGCTCCTCAAGTGTTAAGACAGATGTGGAACTCCTaGCTGGCCTCTGGGGATCAT +
Preference number: 4 (lower is better)
Translates to: PRLLQTHDSPASAPQVLRQMWNS*LASGDH
Trigger: ATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTG...TCTTAACACTTGAGGAGCTGAGGCAGGAGAATCATGAGTTTGAAGGAGCCTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AATGTTACCTGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATATGTTTTGGGCCATCCTaGAAGCCCAGATGTGGAACT +
Preference number: 4 (lower is better)
Translates to: NVTWGLGCSSVVGDFASICFGPS*KPRCGT
Trigger: AGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACA...TATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCAGGTAACATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CTCAGAAAGGCAGGTCTAGCAACAGGGACACTCAAGTACCTGGTTCCCATACCTTGTTTTGGGCCATCCTaGAAGCCCAGATGTGGAACT +
Preference number: 4 (lower is better)
Translates to: LRKAGLATGTLKYLVPIPCFGPS*KPRCGT
Trigger: AGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACA...AGGTATGGGAACCAGGTACTTGAGTGTCCCTGTTGCTAGACCTGCCTTTCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACTCCTGGGGCTTGATCTaGTGCTCACACTGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNSWGLI*CSHWSR
Trigger: CCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGA...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp TGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATAGGTAAGACAAGTTCAGATTCATCCTaGCTGATACAAACCTGCAGC +
Preference number: 4 (lower is better)
Translates to: WGLGCSSVVGDFASIGKTSSDSS*LIQTCS
Trigger: GCTGCAGGTTTGTATCAGGCAGGATGAATCTGAACT...TGTCTTACCTATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp GCAAAGAACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCGTGGCCAGTGCTCTCTaGAGCGCAGGTCCAGGGGTT +
Preference number: 4 (lower is better)
Translates to: AKNSSSFSSIHVRYFTITVASAL*SAGPGV
Trigger: AACCCCTGGACCTGCGCTGCAGAGAGCACTGGCCAC...GGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTTCTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp TTTCTCAAGGGACCTCTGTCACGTGATCAGTCAATGGGACCCCACCCAAGCCTGAGCGGAAATTTCGGATaGCATAGTTATACTGCAAGG +
Preference number: 4 (lower is better)
Translates to: FLKGPLSRDQSMGPHPSLSGNFG*HSYTAR
Trigger: CCTTGCAGTATAACTATGGCATCCGAAATTTCCGCT...CAGGCTTGGGTGGGGTCCCATTGACTGATCACGTGACAGAGGTCCCTTGAGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp TTCTCTTGTATCCTTGGTTTCCCACCTACGGCTTTAGGCCTCACTGTAAAGTGCTTACCAGGGATGGGCTaGACCAAATGGCAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: FSCILGFPPTALGLTVKCLPGMG*TKWQEV
Trigger: TACCTCCTGCCATTTGGTCCAGCCCATCCCTGGTAA...GCACTTTACAGTGAGGCCTAAAGCCGTAGGTGGGAAACCAAGGATACAAGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp CAAACTCATGATTCTCCTGCCTCAGCTCCTCAAGTGTTAAGATTGCAGGCATGTTTGTGCTGTGACGTCTaGCTTGTGTCTGCTGTGGGC +
Preference number: 4 (lower is better)
Translates to: QTHDSPASAPQVLRLQACLCCDV*LVSAVG
Trigger: GCCCACAGCAGACACAAGCCAGACGTCACAGCACAA...ACATGCCTGCAATCTTAACACTTGAGGAGCTGAGGCAGGAGAATCATGAGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CCTAGGCTCCTTCAAACTCATGATTCTCCTGCCTCAGCTCCTCAAGTGTTAAGAGGCACTTTGATGTTTTaGGCCATCCTGGAAGCCCAG +
Preference number: 4 (lower is better)
Translates to: PRLLQTHDSPASAPQVLRGTLMF*AILEAQ
Trigger: CTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCC...TCTTAACACTTGAGGAGCTGAGGCAGGAGAATCATGAGTTTGAAGGAGCCTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp CAAACTCATGATTCTCCTGCCTCAGCTCCTCAAGTGTTAAGATTGCAGGCATGTGTGCTCTCTGTCAGGTaGTCCACTCTGCTCTATTGC +
Preference number: 4 (lower is better)
Translates to: QTHDSPASAPQVLRLQACVLSVR*STLLYC
Trigger: GCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCAC...ACATGCCTGCAATCTTAACACTTGAGGAGCTGAGGCAGGAGAATCATGAGTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACTGGGTGTTTGCTGGGTaGTGGGCTTTGGGGGCTGGG +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNWVFAG*WALGAG
Trigger: CCCAGCCCCCAAAGCCCAGCACCCAGCAAACACCCA...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp GGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACGTGGGAACGGCACTTTGATGTTTTaGGCCATCCTGGAAGCCCAG +
Preference number: 4 (lower is better)
Translates to: GRTQKLFKEGVSCKERGNGTLMF*AILEAQ
Trigger: CTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCC...GTTCCCACGTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp AGTTACATGCACATACTATATACTGTTTTACATAAGGAACTTCAACCTCCCTGGCCTGCAGGCGGGCTGTaGAGCCTCAGGAAACGTGCC +
Preference number: 4 (lower is better)
Translates to: SYMHILYTVLHKELQPPWPAGGL*SLRKRA
Trigger: GGCACGTTTCCTGAGGCTCCACAGCCCGCCTGCAGG...CCAGGGAGGTTGAAGTTCCTTATGTAAAACAGTATATAGTATGTGCATGTAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR CAA 72 bp CTTGGTGTGATGTCATACGCCTGCAATTCCAGCATTTaGGAGGTAGAGGAAAGTGGGCCAGAAGTTCAAGGT +
Preference number: 4 (lower is better)
Translates to: LGVMSYACNSSI*EVEESGPEVQG
Trigger: ACCTTGAACTTCTGGCCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATCACACCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR TCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACGAGGTACTGTCCCAGTaGCGGGTATGGGAGCCCTCT +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNEVLSQ*RVWEPS
Trigger: AGAGGGCTCCCATACCCGTCACTGGGACAGTACCTC...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACTGGGCCCCTCTTCTGTaGGTGTTTGCTGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNWAPLL*VFAGCW
Trigger: CCAGCACCCAGCAAACACCCACAGAAGAGGGGCCCA...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp GCAAAGAACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTCCTGGGGCTTGATCTaGTGCTCACACTGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: AKNSSSFSSIHVRYFTITSWGLI*CSHWSR
Trigger: CCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGA...GGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTTCTTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp GATGTCATACGCCTGCAATTCCAGCATTTTGGAGGTAGAGGAAAGTGGGCCAGAAGCGGAAATTTCGGATaGCATAGTTATACTGCAAGG +
Preference number: 4 (lower is better)
Translates to: DVIRLQFQHFGGRGKWARSGNFG*HSYTAR
Trigger: CCTTGCAGTATAACTATGGCATCCGAAATTTCCGCT...TCTGGCCCACTTTCCTCTACCTCCAAAATGCTGGAATTGCAGGCGTATGACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACAATAATGCCAGGCCTTaGGCATCTTTGCCCAAGAAG +
Preference number: 4 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNNNARP*ASLPKK
Trigger: CTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATT...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACAGTCGCAGTGAGAGATaGTGTGGAAGCGGAAATTTC +
Preference number: 4 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNSRSER*CGSGNF
Trigger: GAAATTTCCGCTTCCACACCATCTCTCACTGCGACT...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACCTGGGTGCTGGGCTTTaGGGGCTGGGAGTATATGAG +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNLGAGL*GLGVYE
Trigger: CTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAG...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACGTCCAGGGGTTTGGATaGAGGAGTGCTGCAAAGGCT +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNVQGFG*RSAAKA
Trigger: AGCCTTTGCAGCACTCCTTCATCCAAACCCCTGGAC...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp CCCTTAAGCAGTGCAGTAAAGCAACAGCCTTCATGTCATTTGCATTACATTATTTGGTTTCCTGGGGCTTaGTCTGGTGCTCACACTGGT +
Preference number: 4 (lower is better)
Translates to: PLSSAVKQQPSCHLHYIIWFPGA*SGAHTG
Trigger: ACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCA...AATAATGTAATGCAAATGACATGAAGGCTGTTGCTTTACTGCACTGCTTAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp TCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACAGTTCAGATTCATCCTaGCTGATACAAACCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SGQEGPRNYLKKGSPVKNSSDSS*LIQTCS
Trigger: GCTGCAGGTTTGTATCAGGCAGGATGAATCTGAACT...GTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR GCA 90 bp AGTTACATGCACATACTATATACTGTTTTACATAAGGAACTTCAACCTCCCTGGGCCACACAGGCCTCCTaGTCCTTCAGCACAAAGCAG +
Preference number: 4 (lower is better)
Translates to: SYMHILYTVLHKELQPPWATQAS*SFSTKQ
Trigger: CTGCTTTGTGCTGAAGGAGCAGGAGGCCTGTGTGGC...CCAGGGAGGTTGAAGTTCCTTATGTAAAACAGTATATAGTATGTGCATGTAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp ATCTCTCTAATTACAGCATTTTGGAGGCTGAGGAAGAAGAATTTCAAGTTCAAAGGCTTGTGTCTGCTGTaGGCCCCTCTTCTGTGGGTG +
Preference number: 4 (lower is better)
Translates to: ISLITAFWRLRKKNFKFKGLCLL*APLLWV
Trigger: CACCCACAGAAGAGGGGCCCACAGCAGACACAAGCC...TTTGAACTTGAAATTCTTCTTCCTCAGCCTCCAAAATGCTGTAATTAGAGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp CCCTTAAGCAGTGCAGTAAAGCAACAGCCTTCATGTCATTTGCATTACATTATTGCACTGTTGAGCAGGTaGAACTTGGTTTCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: PLSSAVKQQPSCHLHYIIALLSR*NLVSWG
Trigger: GCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGC...AATAATGTAATGCAAATGACATGAAGGCTGTTGCTTTACTGCACTGCTTAAGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp GCAAAGAACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCAGTTGCAGGCCTCCCTaGAACACACTGAGACTCCTT +
Preference number: 4 (lower is better)
Translates to: AKNSSSFSSIHVRYFTITSCRPP*NTLRLL
Trigger: AAGGAGTCTCAGTGTGTTCCAGGGAGGCCTGCAACT...GGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTTCTTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp ATCTCTCTAATTACAGCATTTTGGAGGCTGAGGAAGAAGAATTTCAAGTTCAAACTCCCTGGAACACACTaGGACTCCTTTGCCCTCAGC +
Preference number: 4 (lower is better)
Translates to: ISLITAFWRLRKKNFKFKLPGTH*DSFALS
Trigger: GCTGAGGGCAAAGGAGTCTCAGTGTGTTCCAGGGAG...TTTGAACTTGAAATTCTTCTTCCTCAGCCTCCAAAATGCTGTAATTAGAGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACTTACCAGGGATGGGCTaGACCAAATGGCAGGAGGTA +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNLPGMG*TKWQEV
Trigger: TACCTCCTGCCATTTGGTCCAGCCCATCCCTGGTAA...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp ATCTCTCTAATTACAGCATTTTGGAGGCTGAGGAAGAAGAATTTCAAGTTCAAACTCCTGGCTGGCCTCTaGGGATCATATCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: ISLITAFWRLRKKNFKFKLLAGL*GSYQVW
Trigger: CCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAG...TTTGAACTTGAAATTCTTCTTCCTCAGCCTCCAAAATGCTGTAATTAGAGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR CAA 72 bp CAGAAGCAGACAAGGGTAGGTCCCATGTTTCCAACCTaGAATCCTAAACTGCAGTTTCTGGATTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: QKQTRVGPMFPT*NPKLQFLDFLV
Trigger: AACCAAGAAATCCAGAAACTGCAGTTTAGGATTCAAGGTTGGAAACATGGGACCTACCCTTGTCTGCTTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR TCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACGAACACGCCCAGTTCTaGGGCATTTTCAGCAGAGTT +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNEHAQF*GIFSRV
Trigger: AACTCTGCTGAAAATGCCTCAGAACTGGGCGTGTTC...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR GCA 90 bp ATCTCTCTAATTACAGCATTTTGGAGGCTGAGGAAGAAGAATTTCAAGTTCAAATCTTCTGTGGGTGTTTaGTGGGTGCTGGGCTTTGGG +
Preference number: 4 (lower is better)
Translates to: ISLITAFWRLRKKNFKFKSSVGV*WVLGFG
Trigger: CCCAAAGCCCAGCACCCAGCAAACACCCACAGAAGA...TTTGAACTTGAAATTCTTCTTCCTCAGCCTCCAAAATGCTGTAATTAGAGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CCA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACAGTCGCAGTGAGAGATaGTGTGGAAGCGGAAATTTC +
Preference number: 4 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNSRSER*CGSGNF
Trigger: GAAATTTCCGCTTCCACACCATCTCTCACTGCGACT...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
3UTR CAA 72 bp TTAGAGAAGAAGAATGTTTACTGGGTGGTATGTGTGTaGATTAATTCATTTACTCCTCAGCACCCCTGTGAG +
Preference number: 4 (lower is better)
Translates to: LEKKNVYWVVCV*INSFTPQHPCE
Trigger: CTCACAGGGGTGCTGAGGAGTAAATGAATTAATCAACACACATACCACCCAGTAAACATTCTTCTTCTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS CCA 90 bp GTACCCAGGAGATCCCAAACTTTGTCGGTGCCTGCAGGCGGGCTGTaGAGCCTCAGGAAACGTGCCAGACGGCGGGTGCAATCGCAGTGG +
Preference number: 5 (lower is better)
Translates to: VPRRSQTLSVPAGGL*SLRKRARRRVQSQW
Trigger: CCACTGCGATTGCACCCGCCGTCTGGCACGTTTCCTGAGGCTCCACAGCCCGCCTGCAGGCACCGACAAAGTTTGGGATCTCCTGGGTAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 90 bp GTGTTCCCGGCAGCAGAGGTCAGGGCCGTGGAACACGCCCAGTTCTaGGGCATTTTCAGCAGAGTTCCCAACACCGCACCACAGCGTGCC +
Preference number: 5 (lower is better)
Translates to: VFPAAEVRAVEHAQF*GIFSRVPNTAPQRA
Trigger: GGCACGCTGTGGTGCGGTGTTGGGAACTCTGCTGAAAATGCCTCAGAACTGGGCGTGTTCCACGGCCCTGACCTCTGCTGCCGGGAACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 90 bp GGGGCTCCACAGGCTGTGCCAGAGCCCCACCTGTGCCTTTATCCCTaGAATGGAGTCGGCTCTTGTGAAGCCTCTGCAAGTGCCGAGCTG +
Preference number: 5 (lower is better)
Translates to: GAPQAVPEPHLCLYP*NGVGSCEASASAEL
Trigger: CAGCTCGGCACTTGCAGAGGCTTCACAAGAGCCGACTCCATTTCAGGGATAAAGGCACAGGTGGGGCTCTGGCACAGCCTGTGGAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS TCA 90 bp GCGTCTCCAGATTGCCTGGGTTACTTGCAGACACTGGCTGTAGAATaGCATGGTGCTCCCTGGGGGCTCCACAGGCTGTGCCAGAGCCCC +
Preference number: 5 (lower is better)
Translates to: ASPDCLGYLQTLAVE*HGAPWGLHRLCQSP
Trigger: GGGGCTCTGGCACAGCCTGTGGAGCCCCCAGGGAGCACCATGTCATTCTACAGCCAGTGTCTGCAAGTAACCCAGGCAATCTGGAGACGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS CCA 90 bp AGGAGGCATTATAGTAAGTCCTGGGCCGAAGGTGAGCAAGGGGCGTaGAGCCATATGCCCTGCACCCGCCCCACCAGTTCCAAGCCACAC +
Preference number: 5 (lower is better)
Translates to: RRHYSKSWAEGEQGA*SHMPCTRPTSSKPH
Trigger: GTGTGGCTTGGAACTGGTGGGGCGGGTGCAGGGCATATGGCTCCACGCCCCTTGCTCACCTTCGGCCCAGGACTTACTATAATGCCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp GTCTGGCTTGTGTCTGCTGTGGGCCCCTCTTCTGTGGGTGTTTGCTaGGTGCTGGGCTTTGGGGGCTGGGAGTATATGAGGTGGCCTCAG +
Preference number: 5 (lower is better)
Translates to: VWLVSAVGPSSVGVC*VLGFGGWEYMRWPQ
Trigger: CTGAGGCCACCTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAACACCCACAGAAGAGGGGCCCACAGCAGACACAAGCCAGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 90 bp TCGCTTCTCCCTGGCTCCTGTAGGACTATCCTGAGACCTTTGACATaGCTCCCACTGGCTCTGCAGAGTGGCCAGTGCTCTCTGCAGCGC +
Preference number: 5 (lower is better)
Translates to: SLLPGSCRTILRPLT*LPLALQSGQCSLQR
Trigger: GCGCTGCAGAGAGCACTGGCCACTCTGCAGAGCCAGTGGGAGGCATGTCAAAGGTCTCAGGATAGTCCTACAGGAGCCAGGGAGAAGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 90 bp AGATTGCCTGGGTTACTTGCAGACACTGGCTGTAGAATGACATGGTaGTCCCTGGGGGCTCCACAGGCTGTGCCAGAGCCCCACCTGTGC +
Preference number: 5 (lower is better)
Translates to: RLPGLLADTGCRMTW*SLGAPQAVPEPHLC
Trigger: GCACAGGTGGGGCTCTGGCACAGCCTGTGGAGCCCCCAGGGAGCACCATGTCATTCTACAGCCAGTGTCTGCAAGTAACCCAGGCAATCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS TCA 90 bp CACTGGTCCAGGTGGCGAAGGCTTCGACAGACTCGGTGGGCACTTTaGTGTTTTGGGCCATCCTGGAAGCCCAGATGTGGAACTCCTGGC +
Preference number: 5 (lower is better)
Translates to: HWSRWRRLRQTRWAL*CFGPSWKPRCGTPG
Trigger: GCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGTCTGTCGAAGCCTTCGCCACCTGGACCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 90 bp AGGAATGGTCCAGCCTCTCCTCCTTCGACGGTGCTCTCTGTCAGGTaGTCCACTCTGCTCTATTGCTCGCTTCTCCCTGGCTCCTGTAGG +
Preference number: 5 (lower is better)
Translates to: RNGPASPPSTVLSVR*STLLYCSLLPGSCR
Trigger: CCTACAGGAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCACCGTCGAAGGAGGAGAGGCTGGACCATTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 90 bp GCACTGTTGAGCAGGTGGAACTTGGTTTCCTGGGGCTTGATCTGGTaGTCACACTGGTCCAGGTGGCGAAGGCTTCGACAGACTCGGTGG +
Preference number: 5 (lower is better)
Translates to: ALLSRWNLVSWGLIW*SHWSRWRRLRQTRW
Trigger: CCACCGAGTCTGTCGAAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp CATTTTCAGCAGAGTTCCCAACACCGCACCACAGCGTGCCAGGAATaGTCCAGCCTCTCCTCCTTCGACGGTGCTCTCTGTCAGGTGCTC +
Preference number: 5 (lower is better)
Translates to: HFQQSSQHRTTACQE*SSLSSFDGALCQVL
Trigger: GAGCACCTGACAGAGAGCACCGTCGAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGTGGTGCGGTGTTGGGAACTCTGCTGAAAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp AGGTGTAGTGGTAGTTGTGCTGTGACGTCTGGCTTGTGTCTGCTGTaGGCCCCTCTTCTGTGGGTGTTTGCTGGGTGCTGGGCTTTGGGG +
Preference number: 5 (lower is better)
Translates to: RCSGSCAVTSGLCLL*APLLWVFAGCWALG
Trigger: CCCCAAAGCCCAGCACCCAGCAAACACCCACAGAAGAGGGGCCCACAGCAGACACAAGCCAGACGTCACAGCACAACTACCACTACACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp TTGGGCCATCCTGGAAGCCCAGATGTGGAACTCCTGGCTGGCCTCTaGGGATCATATCAGGTCTGGAGGAGATGGCAGGGGTCTGGAAAG +
Preference number: 5 (lower is better)
Translates to: LGHPGSPDVELLAGL*GSYQVWRRWQGSGK
Trigger: CTTTCCAGACCCCTGCCATCTCCTCCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp TGGGCACTGTTGAGCAGGTGGAACTTGGTTTCCTGGGGCTTGATCTaGTGCTCACACTGGTCCAGGTGGCGAAGGCTTCGACAGACTCGG +
Preference number: 5 (lower is better)
Translates to: WALLSRWNLVSWGLI*CSHWSRWRRLRQTR
Trigger: CCGAGTCTGTCGAAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp CTCAGGCTCCCTCTGAGATGTCGTTGTGCCCCAAGTCTAGTGGCAGAAGCAGACGGGATCTCCAGCACGTaGAAGAAGGCCACGCCCATG +
Preference number: 5 (lower is better)
Translates to: LRLPLRCRCAPSLVAEADGISST*KKATPM
Trigger: CATGGGCGTGGCCTTCTTCAACGTGCTGGAGATCCC...GTCTGCTTCTGCCACTAGACTTGGGGCACAACGACATCTCAGAGGGAGCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS GCA 90 bp GTGTATCCCAGAAGGCCTGGAATAATGCCAGGCCTTGGGCATCTTTaGCCAAGAAGCTCAGGGAGCCCAGAGGGTTACCAGGGATGGGCT +
Preference number: 5 (lower is better)
Translates to: VYPRRPGIMPGLGHL*PRSSGSPEGYQGWA
Trigger: AGCCCATCCCTGGTAACCCTCTGGGCTCCCTGAGCTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATTCCAGGCCTTCTGGGATACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 90 bp GTTCTGAGGCATTTTCAGCAGAGTTCCCAACACCGCACCACAGCGTaGCAGGAATGGTCCAGCCTCTCCTCCTTCGACGGTGCTCTCTGT +
Preference number: 5 (lower is better)
Translates to: VLRHFQQSSQHRTTA*QEWSSLSSFDGALC
Trigger: ACAGAGAGCACCGTCGAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGTGGTGCGGTGTTGGGAACTCTGCTGAAAATGCCTCAGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp CATCTTTGCCCAAGAAGCTCAGGGAGCCCAGAGGGTTACCAGGGATaGGCTGGACCAAATGGCAGGAGGTACTGTCCCAGTGACGGGTAT +
Preference number: 5 (lower is better)
Translates to: HLCPRSSGSPEGYQG*AGPNGRRYCPSDGY
Trigger: ATACCCGTCACTGGGACAGTACCTCCTGCCATTTGGTCCAGCCCATCCCTGGTAACCCTCTGGGCTCCCTGAGCTTCTTGGGCAAAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp TATATGAGGTGGCCTCAGCCTTCCAGGAGGCATTATAGTAAGTCCTaGGCCGAAGGTGAGCAAGGGGCGTGGAGCCATATGCCCTGCACC +
Preference number: 5 (lower is better)
Translates to: YMRWPQPSRRHYSKS*AEGEQGAWSHMPCT
Trigger: GGTGCAGGGCATATGGCTCCACGCCCCTTGCTCACCTTCGGCCCAGGACTTACTATAATGCCTCCTGGAAGGCTGAGGCCACCTCATATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp GGTGTTTGCTGGGTGCTGGGCTTTGGGGGCTGGGAGTATATGAGGTaGCCTCAGCCTTCCAGGAGGCATTATAGTAAGTCCTGGGCCGAA +
Preference number: 5 (lower is better)
Translates to: GVCWVLGFGGWEYMR*PQPSRRHYSKSWAE
Trigger: TTCGGCCCAGGACTTACTATAATGCCTCCTGGAAGGCTGAGGCCACCTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAACACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 90 bp TTACCAGGGATGGGCTGGACCAAATGGCAGGAGGTACTGTCCCAGTaGCGGGTATGGGAGCCCTCTAGGAAAGCCAGCACTCCTAGAAGT +
Preference number: 5 (lower is better)
Translates to: LPGMGWTKWQEVLSQ*RVWEPSRKASTPRS
Trigger: ACTTCTAGGAGTGCTGGCTTTCCTAGAGGGCTCCCATACCCGTCACTGGGACAGTACCTCCTGCCATTTGGTCCAGCCCATCCCTGGTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 90 bp CCTGAAATGGAGTCGGCTCTTGTGAAGCCTCTGCAAGTGCCGAGCTaGCACCTTAATGGCCCTGTGGTCTCTGGAACAGCCTTTGCCCTC +
Preference number: 5 (lower is better)
Translates to: PEMESALVKPLQVPS*HLNGPVVSGTAFAL
Trigger: GAGGGCAAAGGCTGTTCCAGAGACCACAGGGCCATTAAGGTGTCAGCTCGGCACTTGCAGAGGCTTCACAAGAGCCGACTCCATTTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS TCA 90 bp AGAGCCCCACCTGTGCCTTTATCCCTGAAATGGAGTCGGCTCTTGTaGAGCCTCTGCAAGTGCCGAGCTGACACCTTAATGGCCCTGTGG +
Preference number: 5 (lower is better)
Translates to: RAPPVPLSLKWSRLL*SLCKCRADTLMALW
Trigger: CCACAGGGCCATTAAGGTGTCAGCTCGGCACTTGCAGAGGCTTCACAAGAGCCGACTCCATTTCAGGGATAAAGGCACAGGTGGGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS GCA 90 bp CCTCCTTCGACGGTGCTCTCTGTCAGGTGCTCCACTCTGCTCTATTaGTCGCTTCTCCCTGGCTCCTGTAGGACTATCCTGAGACCTTTG +
Preference number: 5 (lower is better)
Translates to: PPSTVLSVRCSTLLY*SLLPGSCRTILRPL
Trigger: CAAAGGTCTCAGGATAGTCCTACAGGAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCACCGTCGAAGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp AGCCTGTGGTGTGTATCCCAGAAGGCCTGGAATAATGCCAGGCCTTaGGCATCTTTGCCCAAGAAGCTCAGGGAGCCCAGAGGGTTACCA +
Preference number: 5 (lower is better)
Translates to: SLWCVSQKAWNNARP*ASLPKKLREPRGLP
Trigger: TGGTAACCCTCTGGGCTCCCTGAGCTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATTCCAGGCCTTCTGGGATACACACCACAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp TCGGTGGGCACTTTGATGTTTTGGGCCATCCTGGAAGCCCAGATGTaGAACTCCTGGCTGGCCTCTGGGGATCATATCAGGTCTGGAGGA +
Preference number: 5 (lower is better)
Translates to: SVGTLMFWAILEAQM*NSWLASGDHIRSGG
Trigger: TCCTCCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCCCACCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp AAAAGGGGCATCTGGGCACTGTTGAGCAGGTGGAACTTGGTTTCCTaGGGCTTGATCTGGTGCTCACACTGGTCCAGGTGGCGAAGGCTT +
Preference number: 5 (lower is better)
Translates to: KRGIWALLSRWNLVS*GLIWCSHWSRWRRL
Trigger: AAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGCCCAGATGCCCCTTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp TGTCGGAGATGGAGTCACCCTGGCTCCTCAGGCACTGTTGAAACCTaGCGTCACAGTCGCAGTGAGAGATGGTGTGGAAGCGGAAATTTC +
Preference number: 5 (lower is better)
Translates to: CRRWSHPGSSGTVET*RHSRSERWCGSGNF
Trigger: GAAATTTCCGCTTCCACACCATCTCTCACTGCGACTGTGACGCCAGGTTTCAACAGTGCCTGAGGAGCCAGGGTGACTCCATCTCCGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp ACTTTGATGTTTTGGGCCATCCTGGAAGCCCAGATGTGGAACTCCTaGCTGGCCTCTGGGGATCATATCAGGTCTGGAGGAGATGGCAGG +
Preference number: 5 (lower is better)
Translates to: TLMFWAILEAQMWNS*LASGDHIRSGGDGR
Trigger: CCTGCCATCTCCTCCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp TGCCTGATACAAACCTGCAGCCTGTGGTGTGTATCCCAGAAGGCCTaGAATAATGCCAGGCCTTGGGCATCTTTGCCCAAGAAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: CLIQTCSLWCVSQKA*NNARPWASLPKKLR
Trigger: CCTGAGCTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATTCCAGGCCTTCTGGGATACACACCACAGGCTGCAGGTTTGTATCAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp GGAAGCGGAAATTTCGGATGCCATAGTTATACTGCAAGGGCGAAATaGTTTGTGGGCACTGATCGTGTTCCCGGCAGCAGAGGTCAGGGC +
Preference number: 5 (lower is better)
Translates to: GSGNFGCHSYTARAK*FVGTDRVPGSRGQG
Trigger: GCCCTGACCTCTGCTGCCGGGAACACGATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATCCGAAATTTCCGCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 90 bp GAAATTTCGGATGCCATAGTTATACTGCAAGGGCGAAATGGTTTGTaGGCACTGATCGTGTTCCCGGCAGCAGAGGTCAGGGCCGTGGAA +
Preference number: 5 (lower is better)
Translates to: EISDAIVILQGRNGL*ALIVFPAAEVRAVE
Trigger: TTCCACGGCCCTGACCTCTGCTGCCGGGAACACGATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATCCGAAATTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp TCAGACAGACAAACAATAATGACCCCCACCTCTACCTTCTCTTTCAGAGGAGGGGGGATCTCCAGCACGTaGAAGAAGGCCACGCCCATG +
Preference number: 5 (lower is better)
Translates to: SDRQTIMTPTSTFSFRGGGISST*KKATPM
Trigger: CATGGGCGTGGCCTTCTTCAACGTGCTGGAGATCCC...CCCTCCTCTGAAAGAGAAGGTAGAGGTGGGGGTCATTATTGTTTGTCTGTCTGA
53% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp TGGGGCTTGGGATGCAGCTCAGTGGTAGGAGACTTCGCTAGCATAGGTAAGACATTGAGCAGGTGGAACTaGGTTTCCTGGGGCTTGATC +
Preference number: 5 (lower is better)
Translates to: WGLGCSSVVGDFASIGKTLSRWN*VSWGLI
Trigger: GATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAA...TGTCTTACCTATGCTAGCGAAGTCTCCTACCACTGAGCTGCATCCCAAGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CAA 90 bp AATAATGACCCCCACCTCTACCTTCTCTTTCAGAGGAGGGCACTAAGGCCCATGGGCATCTGGGCACTGTaGAGCAGGTGGAACTTGGTT +
Preference number: 5 (lower is better)
Translates to: NNDPHLYLLFQRRALRPMGIWAL*SRWNLV
Trigger: AACCAAGTTCCACCTGCTCAACAGTGCCCAGATGCC...CATGGGCCTTAGTGCCCTCCTCTGAAAGAGAAGGTAGAGGTGGGGGTCATTATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp ACACCCTGGTTTCTCTCCCCAGTATCACCTAAAACTTGGTGTGATGTCATACGCCTCCACTCTGCTCTATaGCTCGCTTCTCCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: TPWFLSPVSPKTWCDVIRLHSAL*LASPWL
Trigger: GAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAG...GCGTATGACATCACACCAAGTTTTAGGTGATACTGGGGAGAGAAACCAGGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp GGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACGTGGGAACACCCCCCTGCGTCTCCAGATaGCCTGGGTTACTTGCAGAC +
Preference number: 5 (lower is better)
Translates to: GPRNYLKKGSPVKNVGTPPCVSR*PGLLAD
Trigger: GTCTGCAAGTAACCCAGGCAATCTGGAGACGCAGGG...GGGTGTTCCCACGTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS CCA 90 bp TCCTCAGGCACTGTTGAAACCTGGCGTCACAGTCGCAGTGAGAGATaGTGTGGAAGCGGAAATTTCGGATGCCATAGTTATACTGCAAGG +
Preference number: 5 (lower is better)
Translates to: SSGTVETWRHSRSER*CGSGNFGCHSYTAR
Trigger: CCTTGCAGTATAACTATGGCATCCGAAATTTCCGCTTCCACACCATCTCTCACTGCGACTGTGACGCCAGGTTTCAACAGTGCCTGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp GGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGTAAAGAACGTGGGAACACCCTTGGTTTCCTGGGGCTaGATCTGGTGCTCACACTGG +
Preference number: 5 (lower is better)
Translates to: GPRNYLKKGSPVKNVGTPLVSWG*IWCSHW
Trigger: CCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAA...GGGTGTTCCCACGTTCTTTACAGGAGACCCCTTCTTTAAATAGTTTCTGGGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS GCA 90 bp CTGAACGCTGTGATAAGTTCAGATTCATCCTGCCTGATACAAACCTaGAGCCTGTGGTGTGTATCCCAGAAGGCCTGGAATAATGCCAGG +
Preference number: 5 (lower is better)
Translates to: LNAVISSDSSCLIQT*SLWCVSQKAWNNAR
Trigger: CCTGGCATTATTCCAGGCCTTCTGGGATACACACCACAGGCTGCAGGTTTGTATCAGGCAGGATGAATCTGAACTTATCACAGCGTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 90 bp CGTCACAGTCGCAGTGAGAGATGGTGTGGAAGCGGAAATTTCGGATaGCATAGTTATACTGCAAGGGCGAAATGGTTTGTGGGCACTGAT +
Preference number: 5 (lower is better)
Translates to: RHSRSERWCGSGNFG*HSYTARAKWFVGTD
Trigger: ATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATCCGAAATTTCCGCTTCCACACCATCTCTCACTGCGACTGTGACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp ACACCCTGGTTTCTCTCCCCAGTATCACCTAAAACTTGGTGTGATGTCATACGCTTGAGCAGGTGGAACTaGGTTTCCTGGGGCTTGATC +
Preference number: 5 (lower is better)
Translates to: TPWFLSPVSPKTWCDVIRLSRWN*VSWGLI
Trigger: GATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAA...GCGTATGACATCACACCAAGTTTTAGGTGATACTGGGGAGAGAAACCAGGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACCTCCACTCTGCTCTATaGCTCGCTTCTCCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNLHSAL*LASPWL
Trigger: GAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAG...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CAA 90 bp AAGATTAGTTCAGGCCAGGAAGGACCCAGAAACTATTTAAAGAAGGGGTCTCCTGATTGCCTGGGTTACTaGCAGACACTGGCTGTAGAA +
Preference number: 5 (lower is better)
Translates to: KISSGQEGPRNYLKKGSPDCLGY*QTLAVE
Trigger: TTCTACAGCCAGTGTCTGCAAGTAACCCAGGCAATC...AGGAGACCCCTTCTTTAAATAGTTTCTGGGTCCTTCCTGGCCTGAACTAATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS-3UTR CAA 90 bp AGTTACATGCACATACTATATACTGTTTTACATAAGGAACTTCAACCTCCCTGGCTCTTCTGTGGGTGTTaGCTGGGTGCTGGGCTTTGG +
Preference number: 5 (lower is better)
Translates to: SYMHILYTVLHKELQPPWLFCGC*LGAGLW
Trigger: CCAAAGCCCAGCACCCAGCAAACACCCACAGAAGAG...CCAGGGAGGTTGAAGTTCCTTATGTAAAACAGTATATAGTATGTGCATGTAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CAA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACTTGGTTTCCTGGGGCTaGATCTGGTGCTCACACTGG +
Preference number: 5 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNLVSWG*IWCSHW
Trigger: CCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAA...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CAA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACGGCATCTGGGCACTGTaGAGCAGGTGGAACTTGGTT +
Preference number: 5 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNGIWAL*SRWNLV
Trigger: AACCAAGTTCCACCTGCTCAACAGTGCCCAGATGCC...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS-3UTR CAA 90 bp AACTCAAGTTCATTTTCCAGCATTCACGTGAGGTATTTCACAATCACCTACAACCACACTGAGACTCCTTaGCCCTCAGCACAGTCAAGT +
Preference number: 5 (lower is better)
Translates to: NSSSFSSIHVRYFTITYNHTETP*PSAQSS
Trigger: ACTTGACTGTGCTGAGGGCAAAGGAGTCTCAGTGTG...GTTGTAGGTGATTGTGAAATACCTCACGTGAATGCTGGAAAATGAACTTGAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044682.7
CDS CCA 72 bp ACGTCTGGCTTGTGTCTGCTGTGGGCCCCTCTTCTGTaGGTGTTTGCTGGGTGCTGGGCTTTGGGGGCTGGG +
Preference number: 6 (lower is better)
Translates to: TSGLCLLWAPLL*VFAGCWALGAG
Trigger: CCCAGCCCCCAAAGCCCAGCACCCAGCAAACACCCACAGAAGAGGGGCCCACAGCAGACACAAGCCAGACGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 72 bp GGCTGTGGAGCCTCAGGAAACGTGCCAGACGGCGGGTaGAATCGCAGTGGAAAAGGGGCATCTGGGCACTGT +
Preference number: 6 (lower is better)
Translates to: GCGASGNVPDGG*NRSGKGASGHC
Trigger: ACAGTGCCCAGATGCCCCTTTTCCACTGCGATTGCACCCGCCGTCTGGCACGTTTCCTGAGGCTCCACAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp AGATCCCAAACTTTGTCGGTGCCTGCAGGCGGGCTGTaGAGCCTCAGGAAACGTGCCAGACGGCGGGTGCAA +
Preference number: 6 (lower is better)
Translates to: RSQTLSVPAGGL*SLRKRARRRVQ
Trigger: TTGCACCCGCCGTCTGGCACGTTTCCTGAGGCTCCACAGCCCGCCTGCAGGCACCGACAAAGTTTGGGATCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 72 bp CCAGCCTCTCCTCCTTCGACGGTGCTCTCTGTCAGGTaGTCCACTCTGCTCTATTGCTCGCTTCTCCCTGGC +
Preference number: 6 (lower is better)
Translates to: PASPPSTVLSVR*STLLYCSLLPG
Trigger: GCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCACCGTCGAAGGAGGAGAGGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp CAGAGTTCCCAACACCGCACCACAGCGTGCCAGGAATaGTCCAGCCTCTCCTCCTTCGACGGTGCTCTCTGT +
Preference number: 6 (lower is better)
Translates to: QSSQHRTTACQE*SSLSSFDGALC
Trigger: ACAGAGAGCACCGTCGAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGTGGTGCGGTGTTGGGAACTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TCTGTGGGTGTTTGCTGGGTGCTGGGCTTTGGGGGCTaGGAGTATATGAGGTGGCCTCAGCCTTCCAGGAGG +
Preference number: 6 (lower is better)
Translates to: SVGVCWVLGFGG*EYMRWPQPSRR
Trigger: CCTCCTGGAAGGCTGAGGCCACCTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAACACCCACAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp CCTGGAAGCCCAGATGTGGAACTCCTGGCTGGCCTCTaGGGATCATATCAGGTCTGGAGGAGATGGCAGGGG +
Preference number: 6 (lower is better)
Translates to: PGSPDVELLAGL*GSYQVWRRWQG
Trigger: CCCCTGCCATCTCCTCCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp CTCAGGAAACGTGCCAGACGGCGGGTGCAATCGCAGTaGAAAAGGGGCATCTGGGCACTGTTGAGCAGGTGG +
Preference number: 6 (lower is better)
Translates to: LRKRARRRVQSQ*KRGIWALLSRW
Trigger: CCACCTGCTCAACAGTGCCCAGATGCCCCTTTTCCACTGCGATTGCACCCGCCGTCTGGCACGTTTCCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 90 bp CAGGCCTCCTGCTCCTTCAGCACAAAGCAGGGGATCTCCAGCACGTaGAAGAAGGCCACGCCCATGATGTCGGAGATGGAGTCACCCTGG +
Preference number: 6 (lower is better)
Translates to: QASCSFSTKQGISST*KKATPMMSEMESPW
Trigger: CCAGGGTGACTCCATCTCCGACATCATGGGCGTGGCCTTCTTCAACGTGCTGGAGATCCCCTGCTTTGTGCTGAAGGAGCAGGAGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp GCAGCAGAGGTCAGGGCCGTGGAACACGCCCAGTTCTaGGGCATTTTCAGCAGAGTTCCCAACACCGCACCA +
Preference number: 6 (lower is better)
Translates to: AAEVRAVEHAQF*GIFSRVPNTAP
Trigger: TGGTGCGGTGTTGGGAACTCTGCTGAAAATGCCTCAGAACTGGGCGTGTTCCACGGCCCTGACCTCTGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp CCAAGAAGCTCAGGGAGCCCAGAGGGTTACCAGGGATaGGCTGGACCAAATGGCAGGAGGTACTGTCCCAGT +
Preference number: 6 (lower is better)
Translates to: PRSSGSPEGYQG*AGPNGRRYCPS
Trigger: ACTGGGACAGTACCTCCTGCCATTTGGTCCAGCCCATCCCTGGTAACCCTCTGGGCTCCCTGAGCTTCTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp GGGCCATCCTGGAAGCCCAGATGTGGAACTCCTGGCTaGCCTCTGGGGATCATATCAGGTCTGGAGGAGATG +
Preference number: 6 (lower is better)
Translates to: GPSWKPRCGTPG*PLGIISGLEEM
Trigger: CATCTCCTCCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 90 bp GGCATCTGGGCACTGTTGAGCAGGTGGAACTTGGTTTCCTGGGGCTaGATCTGGTGCTCACACTGGTCCAGGTGGCGAAGGCTTCGACAG +
Preference number: 6 (lower is better)
Translates to: GIWALLSRWNLVSWG*IWCSHWSRWRRLRQ
Trigger: CTGTCGAAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGCCCAGATGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 90 bp AGGGGTCTGGAAAGGTGTAGTGGTAGTTGTGCTGTGACGTCTGGCTaGTGTCTGCTGTGGGCCCCTCTTCTGTGGGTGTTTGCTGGGTGC +
Preference number: 6 (lower is better)
Translates to: RGLERCSGSCAVTSG*CLLWAPLLWVFAGC
Trigger: GCACCCAGCAAACACCCACAGAAGAGGGGCCCACAGCAGACACAAGCCAGACGTCACAGCACAACTACCACTACACCTTTCCAGACCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 90 bp ACACTGGTCCAGGTGGCGAAGGCTTCGACAGACTCGGTGGGCACTTaGATGTTTTGGGCCATCCTGGAAGCCCAGATGTGGAACTCCTGG +
Preference number: 6 (lower is better)
Translates to: TLVQVAKASTDSVGT*MFWAILEAQMWNSW
Trigger: CCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGTCTGTCGAAGCCTTCGCCACCTGGACCAGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp GCAGGGGTCTGGAAAGGTGTAGTGGTAGTTGTGCTGTaGCGTCTGGCTTGTGTCTGCTGTGGGCCCCTCTTC +
Preference number: 6 (lower is better)
Translates to: AGVWKGVVVVVL*RLACVCCGPLF
Trigger: GAAGAGGGGCCCACAGCAGACACAAGCCAGACGTCACAGCACAACTACCACTACACCTTTCCAGACCCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp GAGTCGGCTCTTGTGAAGCCTCTGCAAGTGCCGAGCTaGCACCTTAATGGCCCTGTGGTCTCTGGAACAGCC +
Preference number: 6 (lower is better)
Translates to: ESALVKPLQVPS*HLNGPVVSGTA
Trigger: GGCTGTTCCAGAGACCACAGGGCCATTAAGGTGTCAGCTCGGCACTTGCAGAGGCTTCACAAGAGCCGACTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS GCA 72 bp CTCCTTCGACGGTGCTCTCTGTCAGGTGCTCCACTCTaGTCTATTGCTCGCTTCTCCCTGGCTCCTGTAGGA +
Preference number: 6 (lower is better)
Translates to: LLRRCSLSGAPL*SIARFSLAPVG
Trigger: TCCTACAGGAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCACCGTCGAAGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 72 bp CATTTTCAGCAGAGTTCCCAACACCGCACCACAGCGTaGCAGGAATGGTCCAGCCTCTCCTCCTTCGACGGT +
Preference number: 6 (lower is better)
Translates to: HFQQSSQHRTTA*QEWSSLSSFDG
Trigger: ACCGTCGAAGGAGGAGAGGCTGGACCATTCCTGGCACGCTGTGGTGCGGTGTTGGGAACTCTGCTGAAAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TGGAGTCACCCTGGCTCCTCAGGCACTGTTGAAACCTaGCGTCACAGTCGCAGTGAGAGATGGTGTGGAAGC +
Preference number: 6 (lower is better)
Translates to: WSHPGSSGTVET*RHSRSERWCGS
Trigger: GCTTCCACACCATCTCTCACTGCGACTGTGACGCCAGGTTTCAACAGTGCCTGAGGAGCCAGGGTGACTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TGGCCTCAGCCTTCCAGGAGGCATTATAGTAAGTCCTaGGCCGAAGGTGAGCAAGGGGCGTGGAGCCATATG +
Preference number: 6 (lower is better)
Translates to: WPQPSRRHYSKS*AEGEQGAWSHM
Trigger: CATATGGCTCCACGCCCCTTGCTCACCTTCGGCCCAGGACTTACTATAATGCCTCCTGGAAGGCTGAGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp AACTTGGTTTCCTGGGGCTTGATCTGGTGCTCACACTaGTCCAGGTGGCGAAGGCTTCGACAGACTCGGTGG +
Preference number: 6 (lower is better)
Translates to: NLVSWGLIWCSH*SRWRRLRQTRW
Trigger: CCACCGAGTCTGTCGAAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp AGACGGCGGGTGCAATCGCAGTGGAAAAGGGGCATCTaGGCACTGTTGAGCAGGTGGAACTTGGTTTCCTGG +
Preference number: 6 (lower is better)
Translates to: RRRVQSQWKRGI*ALLSRWNLVSW
Trigger: CCAGGAAACCAAGTTCCACCTGCTCAACAGTGCCCAGATGCCCCTTTTCCACTGCGATTGCACCCGCCGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 72 bp AGTGGCCAGTGCTCTCTGCAGCGCAGGTCCAGGGGTTaGGATGAAGGAGTGCTGCAAAGGCTCATGAGCACA +
Preference number: 6 (lower is better)
Translates to: SGQCSLQRRSRG*DEGVLQRLMST
Trigger: TGTGCTCATGAGCCTTTGCAGCACTCCTTCATCCAAACCCCTGGACCTGCGCTGCAGAGAGCACTGGCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 72 bp CTTCTCCCTGGCTCCTGTAGGACTATCCTGAGACCTTaGACATGCCTCCCACTGGCTCTGCAGAGTGGCCAG +
Preference number: 6 (lower is better)
Translates to: LLPGSCRTILRP*TCLPLALQSGQ
Trigger: CTGGCCACTCTGCAGAGCCAGTGGGAGGCATGTCAAAGGTCTCAGGATAGTCCTACAGGAGCCAGGGAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 72 bp GTCGGAGATGGAGTCACCCTGGCTCCTCAGGCACTGTaGAAACCTGGCGTCACAGTCGCAGTGAGAGATGGT +
Preference number: 6 (lower is better)
Translates to: VGDGVTLAPQAL*KPGVTVAVRDG
Trigger: ACCATCTCTCACTGCGACTGTGACGCCAGGTTTCAACAGTGCCTGAGGAGCCAGGGTGACTCCATCTCCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 90 bp TATTGCTCGCTTCTCCCTGGCTCCTGTAGGACTATCCTGAGACCTTaGACATGCCTCCCACTGGCTCTGCAGAGTGGCCAGTGCTCTCTG +
Preference number: 6 (lower is better)
Translates to: YCSLLPGSCRTILRP*TCLPLALQSGQCSL
Trigger: CAGAGAGCACTGGCCACTCTGCAGAGCCAGTGGGAGGCATGTCAAAGGTCTCAGGATAGTCCTACAGGAGCCAGGGAGAAGCGAGCAATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp AGGTGGCGAAGGCTTCGACAGACTCGGTGGGCACTTTaGTGTTTTGGGCCATCCTGGAAGCCCAGATGTGGA +
Preference number: 6 (lower is better)
Translates to: RWRRLRQTRWAL*CFGPSWKPRCG
Trigger: TCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGTCTGTCGAAGCCTTCGCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp CAGGCTGTGCCAGAGCCCCACCTGTGCCTTTATCCCTaGAATGGAGTCGGCTCTTGTGAAGCCTCTGCAAGT +
Preference number: 6 (lower is better)
Translates to: QAVPEPHLCLYP*NGVGSCEASAS
Trigger: ACTTGCAGAGGCTTCACAAGAGCCGACTCCATTTCAGGGATAAAGGCACAGGTGGGGCTCTGGCACAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS GCA 72 bp AGAAGGCCTGGAATAATGCCAGGCCTTGGGCATCTTTaGCCAAGAAGCTCAGGGAGCCCAGAGGGTTACCAG +
Preference number: 6 (lower is better)
Translates to: RRPGIMPGLGHL*PRSSGSPEGYQ
Trigger: CTGGTAACCCTCTGGGCTCCCTGAGCTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATTCCAGGCCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 72 bp ACGGTGCTCTCTGTCAGGTGCTCCACTCTGCTCTATTaGTCGCTTCTCCCTGGCTCCTGTAGGACTATCCTG +
Preference number: 6 (lower is better)
Translates to: TVLSVRCSTLLY*SLLPGSCRTIL
Trigger: CAGGATAGTCCTACAGGAGCCAGGGAGAAGCGAGCAATAGAGCAGAGTGGAGCACCTGACAGAGAGCACCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TGGGTGCTGGGCTTTGGGGGCTGGGAGTATATGAGGTaGCCTCAGCCTTCCAGGAGGCATTATAGTAAGTCC +
Preference number: 6 (lower is better)
Translates to: WVLGFGGWEYMR*PQPSRRHYSKS
Trigger: GGACTTACTATAATGCCTCCTGGAAGGCTGAGGCCACCTCATATACTCCCAGCCCCCAAAGCCCAGCACCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TTTTGGGCCATCCTGGAAGCCCAGATGTGGAACTCCTaGCTGGCCTCTGGGGATCATATCAGGTCTGGAGGA +
Preference number: 6 (lower is better)
Translates to: FWAILEAQMWNS*LASGDHIRSGG
Trigger: TCCTCCAGACCTGATATGATCCCCAGAGGCCAGCCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TTGAGCAGGTGGAACTTGGTTTCCTGGGGCTTGATCTaGTGCTCACACTGGTCCAGGTGGCGAAGGCTTCGA +
Preference number: 6 (lower is better)
Translates to: LSRWNLVSWGLI*CSHWSRWRRLR
Trigger: TCGAAGCCTTCGCCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp ATCTGGGCACTGTTGAGCAGGTGGAACTTGGTTTCCTaGGGCTTGATCTGGTGCTCACACTGGTCCAGGTGG +
Preference number: 6 (lower is better)
Translates to: IWALLSRWNLVS*GLIWCSHWSRW
Trigger: CCACCTGGACCAGTGTGAGCACCAGATCAAGCCCCAGGAAACCAAGTTCCACCTGCTCAACAGTGCCCAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp CTCTGCAAGTGCCGAGCTGACACCTTAATGGCCCTGTaGTCTCTGGAACAGCCTTTGCCCTCAGCACAGTCA +
Preference number: 6 (lower is better)
Translates to: LCKCRADTLMAL*SLEQPLPSAQS
Trigger: TGACTGTGCTGAGGGCAAAGGCTGTTCCAGAGACCACAGGGCCATTAAGGTGTCAGCTCGGCACTTGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS CAA 72 bp TGCTCCTTCAGCACAAAGCAGGGGATCTCCAGCACGTaGAAGAAGGCCACGCCCATGATGTCGGAGATGGAG +
Preference number: 6 (lower is better)
Translates to: CSFSTKQGISST*KKATPMMSEME
Trigger: CTCCATCTCCGACATCATGGGCGTGGCCTTCTTCAACGTGCTGGAGATCCCCTGCTTTGTGCTGAAGGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 90 bp GCGGAAATTTCGGATGCCATAGTTATACTGCAAGGGCGAAATGGTTaGTGGGCACTGATCGTGTTCCCGGCAGCAGAGGTCAGGGCCGTG +
Preference number: 6 (lower is better)
Translates to: AEISDAIVILQGRNG*WALIVFPAAEVRAV
Trigger: CACGGCCCTGACCTCTGCTGCCGGGAACACGATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATCCGAAATTTCCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp TTTGCTGGGTGCTGGGCTTTGGGGGCTGGGAGTATATaGGGTGGCCTCAGCCTTCCAGGAGGCATTATAGTA +
Preference number: 6 (lower is better)
Translates to: FAGCWALGAGSI*GGLSLPGGIIV
Trigger: TACTATAATGCCTCCTGGAAGGCTGAGGCCACCTCATATACTCCCAGCCCCCAAAGCCCAGCACCCAGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TGTGTATCCCAGAAGGCCTGGAATAATGCCAGGCCTTaGGCATCTTTGCCCAAGAAGCTCAGGGAGCCCAGA +
Preference number: 6 (lower is better)
Translates to: CVSQKAWNNARP*ASLPKKLREPR
Trigger: TCTGGGCTCCCTGAGCTTCTTGGGCAAAGATGCCCAAGGCCTGGCATTATTCCAGGCCTTCTGGGATACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp CAAACCTGCAGCCTGTGGTGTGTATCCCAGAAGGCCTaGAATAATGCCAGGCCTTGGGCATCTTTGCCCAAG +
Preference number: 6 (lower is better)
Translates to: QTCSLWCVSQKA*NNARPWASLPK
Trigger: CTTGGGCAAAGATGCCCAAGGCCTGGCATTATTCCAGGCCTTCTGGGATACACACCACAGGCTGCAGGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp AAGGCTTCGACAGACTCGGTGGGCACTTTGATGTTTTaGGCCATCCTGGAAGCCCAGATGTGGAACTCCTGG +
Preference number: 6 (lower is better)
Translates to: KASTDSVGTLMF*AILEAQMWNSW
Trigger: CCAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGTCTGTCGAAGCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 72 bp GAAGGCTTCGACAGACTCGGTGGGCACTTTGATGTTTaGGGCCATCCTGGAAGCCCAGATGTGGAACTCCTG +
Preference number: 6 (lower is better)
Translates to: EGFDRLGGHFDV*GHPGSPDVELL
Trigger: CAGGAGTTCCACATCTGGGCTTCCAGGATGGCCCAAAACATCAAAGTGCCCACCGAGTCTGTCGAAGCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp CCAGGGGTTTGGATGAAGGAGTGCTGCAAAGGCTCATaGGCACAGAGGGCCCTGAACGCTGTGATAAGTTCA +
Preference number: 6 (lower is better)
Translates to: PGVWMKECCKGS*AQRALNAVISS
Trigger: TGAACTTATCACAGCGTTCAGGGCCCTCTGTGCTCATGAGCCTTTGCAGCACTCCTTCATCCAAACCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp GATGCCATAGTTATACTGCAAGGGCGAAATGGTTTGTaGGCACTGATCGTGTTCCCGGCAGCAGAGGTCAGG +
Preference number: 6 (lower is better)
Translates to: DAIVILQGRNGL*ALIVFPAAEVR
Trigger: CCTGACCTCTGCTGCCGGGAACACGATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CAA 72 bp TCGGATGCCATAGTTATACTGCAAGGGCGAAATGGTTaGTGGGCACTGATCGTGTTCCCGGCAGCAGAGGTC +
Preference number: 6 (lower is better)
Translates to: SDAIVILQGRNG*WALIVFPAAEV
Trigger: GACCTCTGCTGCCGGGAACACGATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS TCA 72 bp CCTGTGCCTTTATCCCTGAAATGGAGTCGGCTCTTGTaGAGCCTCTGCAAGTGCCGAGCTGACACCTTAATG +
Preference number: 6 (lower is better)
Translates to: PVPLSLKWSRLL*SLCKCRADTLM
Trigger: CATTAAGGTGTCAGCTCGGCACTTGCAGAGGCTTCACAAGAGCCGACTCCATTTCAGGGATAAAGGCACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064265.13
CDS GCA 72 bp AGGGCCCTGAACGCTGTGATAAGTTCAGATTCATCCTaGCTGATACAAACCTGCAGCCTGTGGTGTGTATCC +
Preference number: 6 (lower is better)
Translates to: RALNAVISSDSS*LIQTCSLWCVS
Trigger: GGATACACACCACAGGCTGCAGGTTTGTATCAGGCAGGATGAATCTGAACTTATCACAGCGTTCAGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp TCAGATTCATCCTGCCTGATACAAACCTGCAGCCTGTaGTGTGTATCCCAGAAGGCCTGGAATAATGCCAGG +
Preference number: 6 (lower is better)
Translates to: SDSSCLIQTCSL*CVSQKAWNNAR
Trigger: CCTGGCATTATTCCAGGCCTTCTGGGATACACACCACAGGCTGCAGGTTTGTATCAGGCAGGATGAATCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp AATTTCGGATGCCATAGTTATACTGCAAGGGCGAAATaGTTTGTGGGCACTGATCGTGTTCCCGGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: NFGCHSYTARAK*FVGTDRVPGSR
Trigger: TCTGCTGCCGGGAACACGATCAGTGCCCACAAACCATTTCGCCCTTGCAGTATAACTATGGCATCCGAAATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS GCA 72 bp GTGATAAGTTCAGATTCATCCTGCCTGATACAAACCTaGAGCCTGTGGTGTGTATCCCAGAAGGCCTGGAAT +
Preference number: 6 (lower is better)
Translates to: VISSDSSCLIQT*SLWCVSQKAWN
Trigger: ATTCCAGGCCTTCTGGGATACACACCACAGGCTGCAGGTTTGTATCAGGCAGGATGAATCTGAACTTATCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13
CDS CCA 72 bp ACTGTTGAAACCTGGCGTCACAGTCGCAGTGAGAGATaGTGTGGAAGCGGAAATTTCGGATGCCATAGTTAT +
Preference number: 6 (lower is better)
Translates to: TVETWRHSRSER*CGSGNFGCHSY
Trigger: ATAACTATGGCATCCGAAATTTCCGCTTCCACACCATCTCTCACTGCGACTGTGACGCCAGGTTTCAACAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044682.7
ENSMUST00000064265.13