Pregenerated sensors for PLA2G1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029522Ensembl transcript IDs: ENSMUST00000031495.11, ENSMUST00000112071.8, ENSMUST00000125568.2, ENSMUST00000145785.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGTaGCAGGCTAACAGAATTTCCCGGTGTCAAGGTTTTTGTATTCCT | + |
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Preference number: 1 (lower is better) Translates to: IRQQGGRGRRGQEVR*QANRISRCQGFCIP Trigger: AGGAATACAAAAACCTTGACACCGGGAAATTCTGTTAGCCTGTCACCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| 3UTR TCA 72 bp | GACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTaGGGTGACAGGCTAACAGAATTTCCCGGTGTCAAG | + |
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Preference number: 3 (lower is better) Translates to: DSKVGGVGVGRK*GDRLTEFPGVK Trigger: CTTGACACCGGGAAATTCTGTTAGCCTGTCACCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| 3UTR TCA 72 bp | GCTCTGACAGCAGGTACTTTATTAGAGGGCGCAGGGTaGAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGG | + |
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Preference number: 3 (lower is better) Translates to: ALTAGTLLEGAG*NKTARWAGSAW Trigger: CCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCTCTAATAAAGTACCTGCTGTCAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| 3UTR TCA 72 bp | CAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGTaGCAGGCTAACAGAATTTCCCGGTGTCAAGGTTTT | + |
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Preference number: 3 (lower is better) Translates to: QGGRGRRGQEVR*QANRISRCQGF Trigger: AAAACCTTGACACCGGGAAATTCTGTTAGCCTGTCACCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| CDS-3UTR GCA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: RAQGEIRQQGGRGRRGQESRPLG*PSRPSH Trigger: GTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACT...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR GCA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRSRPLG*PSRPSH Trigger: GTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACT...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR TCA 90 bp | GCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGCAGCAGCGCCTGCTGTaGGCAGAGCAGCCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: AQGEIRQQGGRGRRGQEVQQRLL*AEQPAE Trigger: TTCTGCTGGCTGCTCTGCTCACAGCAGGCGCTGCTG...CACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR GCA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGTGCAGCAGCGCCTaGTGTGAGCAGAGCAGCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RAQGEIRQQGGRGRRGQEVCSSA*CEQSSQ Trigger: CTGGCTGCTCTGCTCACAGCAGGCGCTGCTGCACAC...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR TCA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGCAGCAGCGCCTGCTGTaGGCAGAGCAGCCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRQQRLL*AEQPAE Trigger: TTCTGCTGGCTGCTCTGCTCACAGCAGGCGCTGCTG...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR CCA 90 bp | GCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGCCTTGGAGAAGCAGATaGCGGCCTCACGGTCACAGT | + |
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Preference number: 4 (lower is better) Translates to: AQGEIRQQGGRGRRGQEVPWRSR*RPHGHS Trigger: ACTGTGACCGTGAGGCCGCCATCTGCTTCTCCAAGG...CACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS-3UTR TCA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAACGGGGATGGTGCACTTaGTCATATTGCGGAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: RAQGEIRQQGGRGRRGQERGWCT*SYCGTA Trigger: GGCAGTTCCGCAATATGATCAAGTGCACCATCCCCG...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR TCA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAACTCGCTCCCGGAGCATaGGTAGGAGTAAGTGTTGGT | + |
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Preference number: 4 (lower is better) Translates to: RAQGEIRQQGGRGRRGQELAPGA*VGVSVG Trigger: ACCAACACTTACTCCTACTCATGCTCCGGGAGCGAG...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS-3UTR GCA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAATCATATTGCGGAACTaGCACACAGCCCGAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: RAQGEIRQQGGRGRRGQEIILRN*HTARGL Trigger: CAGCCCTCGGGCTGTGTGGCAGTTCCGCAATATGAT...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR GCA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGATCATATTGCGGAACTaGCACACAGCCCGAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRIILRN*HTARGL Trigger: CAGCCCTCGGGCTGTGTGGCAGTTCCGCAATATGAT...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR CCA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAAGCTTTCCAGCTTCTTaGCCTGACTGTAGCAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: RAQGEIRQQGGRGRRGQESFPAS*PDCSSG Trigger: ACCACTGCTACAGTCAGGCCAAGAAGCTGGAAAGCT...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS-3UTR TCA 90 bp | AAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAATCCCAGTACTTCAGCAGCGCCTGCTGTaGGCAGAGCAGCCAGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: KATFSRCGGPRLYSIPVLQQRLL*AEQPAE Trigger: TTCTGCTGGCTGCTCTGCTCACAGCAGGCGCTGCTG...AAGTACTGGGATTGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS-3UTR GCA 90 bp | TATTTATTGAAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAATCAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: YLLKATFSRCGGPRLYSISRPLG*PSRPSH Trigger: GTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACT...GATTGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTTCAATAAATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS-3UTR TCA 90 bp | TTATTGAAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAATCCCACGGGGATGGTGCACTTaGTCATATTGCGGAACTGCC | + |
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Preference number: 4 (lower is better) Translates to: LLKATFSRCGGPRLYSIPRGWCT*SYCGTA Trigger: GGCAGTTCCGCAATATGATCAAGTGCACCATCCCCG...TGGGATTGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTTCAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS-3UTR GCA 90 bp | ATATATTTATTGAAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAGTGTGCAGCAGCGCCTaGTGTGAGCAGAGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: IYLLKATFSRCGGPRLYSVCSSA*CEQSSQ Trigger: CTGGCTGCTCTGCTCACAGCAGGCGCTGCTGCACAC...TGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTTCAATAAATATAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS-3UTR GCA 90 bp | TTATTGAAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAATCCCAATCATATTGCGGAACTaGCACACAGCCCGAGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: LLKATFSRCGGPRLYSIPIILRN*HTARGL Trigger: CAGCCCTCGGGCTGTGTGGCAGTTCCGCAATATGAT...TGGGATTGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTTCAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| 3UTR CAA 72 bp | CAGAATTTCCCGGTGTCAAGGTTTTTGTATTCCTTGTaGTACGGGACCTTGGAGAAGCAGATGGCGGCCTCA | + |
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Preference number: 4 (lower is better) Translates to: QNFPVSRFLYSL*YGTLEKQMAAS Trigger: TGAGGCCGCCATCTGCTTCTCCAAGGTCCCGTACAACAAGGAATACAAAAACCTTGACACCGGGAAATTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| CDS-3UTR CAA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAATTGTTGTACGGGACCTaGGAGAAGCAGATGGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: RAQGEIRQQGGRGRRGQELLYGT*EKQMAA Trigger: GGCCGCCATCTGCTTCTCCAAGGTCCCGTACAACAA...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS-3UTR CAA 90 bp | AGGGCGCAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAACCGGGGATGGTGCACTaGATCATATTGCGGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: RAQGEIRQQGGRGRRGQEPGMVH*IILRNC Trigger: GCAGTTCCGCAATATGATCAAGTGCACCATCCCCGG...TTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTGCGCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS GCA 90 bp | GATCATATTGCGGAACTGCCACACAGCCCGAGGGCTGATGCTGTGTaGAGCAGCGCCTGCTGTGAGCAGAGCAGCCAGCAGAAGGAGTTT | + |
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Preference number: 5 (lower is better) Translates to: DHIAELPHSPRADAV*SSACCEQSSQQKEF Trigger: AAACTCCTTCTGCTGGCTGCTCTGCTCACAGCAGGCGCTGCTGCACACAGCATCAGCCCTCGGGCTGTGTGGCAGTTCCGCAATATGATC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031495.11 ENSMUST00000112071.8 ENSMUST00000145785.8 |
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| CDS GCA 90 bp | GGCTGTGGGTTCGGTCCTCAGCTCTGTCTAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCACAGTAGCAGCCATAGTTGTTGTAAT | + |
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Preference number: 5 (lower is better) Translates to: GCGFGPQLCLSRPLG*PSRPSHSSSHSCCN Trigger: ATTACAACAACTATGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGAGCTGAGGACCGAACCCACAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS-3UTR CAA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGGTGCACTTGATCATATaGCGGAACTGCCACACAGCC | + |
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Preference number: 5 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRVHLII*RNCHTA Trigger: GGCTGTGTGGCAGTTCCGCAATATGATCAAGTGCAC...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000145785.8 |
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| CDS-3UTR CAA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGTCGCATTTGTTGTTTTaGGCGCTGCAGGTGATCTCG | + |
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Preference number: 5 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRSHLLF*ALQVIS Trigger: CGAGATCACCTGCAGCGCCAAAAACAACAAATGCGA...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS GCA 90 bp | AGTGGTCATGAGTCTGGCAGCACCTGTCTAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCACAGTAGCAGCCATAGTTGTTGTAAT | + |
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Preference number: 5 (lower is better) Translates to: SGHESGSTCLSRPLG*PSRPSHSSSHSCCN Trigger: ATTACAACAACTATGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGGTGCTGCCAGACTCATGACCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000125568.2 |
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| CDS-3UTR CAA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGCCGGTGTCAAGGTTTTaGTATTCCTTGTTGTACGGG | + |
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Preference number: 5 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRPVSRF*YSLLYG Trigger: CCCGTACAACAAGGAATACAAAAACCTTGACACCGG...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS-3UTR CAA 90 bp | CAGGGTGAAATAAGACAGCAAGGTGGGCGGGGTCGGCGTGGGCAGGAAGTGAGGAGGTTTTTGTATTCCTaGTTGTACGGGACCTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: QGEIRQQGGRGRRGQEVRRFLYS*LYGTLE Trigger: CTCCAAGGTCCCGTACAACAAGGAATACAAAAACCT...CCTCACTTCCTGCCCACGCCGACCCCGCCCACCTTGCTGTCTTATTTCACCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS GCA 90 bp | GTCCTCGCATTTGTTGTTTTTGGCTGTCTAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCACAGTAGCAGCCATAGTTGTTGTAAT | + |
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Preference number: 5 (lower is better) Translates to: VLAFVVFGCLSRPLG*PSRPSHSSSHSCCN Trigger: ATTACAACAACTATGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGCCAAAAACAACAAATGCGAGGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| CDS-3UTR CAA 90 bp | GTTTTTGTATTCCTTGTTGTACGGGACCTTGGAGAAGCAGATGGCGGCCTCACGGTGCACTTGATCATATaGCGGAACTGCCACACAGCC | + |
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Preference number: 5 (lower is better) Translates to: VFVFLVVRDLGEADGGLTVHLII*RNCHTA Trigger: GGCTGTGTGGCAGTTCCGCAATATGATCAAGTGCAC...CGTGAGGCCGCCATCTGCTTCTCCAAGGTCCCGTACAACAAGGAATACAAAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| CDS-3UTR CAA 90 bp | TTGAAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAATCCCAGTAGTGCACTTGATCATATaGCGGAACTGCCACACAGCC | + |
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Preference number: 5 (lower is better) Translates to: LKATFSRCGGPRLYSIPVVHLII*RNCHTA Trigger: GGCTGTGTGGCAGTTCCGCAATATGATCAAGTGCAC...TACTGGGATTGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTTCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS-3UTR CAA 90 bp | TTTATTGAAAGCTACTTTTTCCAGGTGTGGTGGCCCCCGCCTTTATTCAATCCCCCGGGGATGGTGCACTaGATCATATTGCGGAACTGC | + |
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Preference number: 5 (lower is better) Translates to: FIESYFFQVWWPPPLFNPPGMVH*IILRNC Trigger: GCAGTTCCGCAATATGATCAAGTGCACCATCCCCGG...GGGATTGAATAAAGGCGGGGGCCACCACACCTGGAAAAAGTAGCTTTCAATAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS TCA 90 bp | TCCCGGAGCATGAGTAGGAGTAAGTGTTGGTGTAGGGGTTGTCTATaGGGAATTTACAGCTTTCCAGCTTCTTGGCCTGACTGTAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: SRSMSRSKCWCRGCL*GIYSFPASWPDCSS Trigger: ACTGCTACAGTCAGGCCAAGAAGCTGGAAAGCTGTAAATTCCTCATAGACAACCCCTACACCAACACTTACTCCTACTCATGCTCCGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000125568.2 |
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| CDS GCA 72 bp | GCGGAACTGCCACACAGCCCGAGGGCTGATGCTGTGTaGAGCAGCGCCTGCTGTGAGCAGAGCAGCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: AELPHSPRADAV*SSACCEQSSQQ Trigger: CTGCTGGCTGCTCTGCTCACAGCAGGCGCTGCTGCACACAGCATCAGCCCTCGGGCTGTGTGGCAGTTCCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031495.11 ENSMUST00000112071.8 ENSMUST00000145785.8 |
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| CDS GCA 72 bp | GCGGAACTGCCACACAGCCCGAGGGCTGATGCTGTGTaGAGCAGCGCCTGTGAGCAGAGCAGCCAGCAGAAG | + |
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Preference number: 6 (lower is better) Translates to: AELPHSPRADAV*SSACEQSSQQK Trigger: CTTCTGCTGGCTGCTCTGCTCACAGGCGCTGCTGCACACAGCATCAGCCCTCGGGCTGTGTGGCAGTTCCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000125568.2 |
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| CDS GCA 72 bp | GAGTCTGGCAGCACCTGTCTAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCACAGTAGCAGCCATAGT | + |
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Preference number: 6 (lower is better) Translates to: ESGSTCLSRPLG*PSRPSHSSSHS Trigger: ACTATGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGGTGCTGCCAGACTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000125568.2 |
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| CDS GCA 72 bp | TTCGGTCCTCAGCTCTGTCTAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCACAGTAGCAGCCATAGT | + |
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Preference number: 6 (lower is better) Translates to: FGPQLCLSRPLG*PSRPSHSSSHS Trigger: ACTATGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGAGCTGAGGACCGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112071.8 |
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| CDS TCA 72 bp | AATCCTTCAGGGGATCACTCCCGGGGATGGTGCACTTaGTCATATTGCGGAACTGCCACACAGCCCGAGGGC | + |
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Preference number: 6 (lower is better) Translates to: NPSGDHSRGWCT*SYCGTATQPEG Trigger: GCCCTCGGGCTGTGTGGCAGTTCCGCAATATGATCAAGTGCACCATCCCCGGGAGTGATCCCCTGAAGGATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031495.11 ENSMUST00000112071.8 ENSMUST00000125568.2 ENSMUST00000145785.8 |
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| CDS GCA 72 bp | TTTGTTGTTTTTGGCTGTCTAAGTCGTCCACTGGGGTaGCCCAGCCGCCCAAGCCACAGTAGCAGCCATAGT | + |
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Preference number: 6 (lower is better) Translates to: FVVFGCLSRPLG*PSRPSHSSSHS Trigger: ACTATGGCTGCTACTGTGGCTTGGGCGGCTGGGGCACCCCAGTGGACGACTTAGACAGCCAAAAACAACAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000145785.8 |
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| CDS CAA 90 bp | TTGTACGGGACCTTGGAGAAGCAGATGGCGGCCTCACGGTCACAGTaGCAGATGAAGTCCTCGCATTTGTTGTTTTTGGCGCTGCAGGTG | + |
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Preference number: 6 (lower is better) Translates to: LYGTLEKQMAASRSQ*QMKSSHLLFLALQV Trigger: CACCTGCAGCGCCAAAAACAACAAATGCGAGGACTTCATCTGCAACTGTGACCGTGAGGCCGCCATCTGCTTCTCCAAGGTCCCGTACAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS CAA 72 bp | TCACGGTCACAGTTGCAGATGAAGTCCTCGCATTTGTaGTTTTTGGCGCTGCAGGTGATCTCGCTCCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: SRSQLQMKSSHL*FLALQVISLPE Trigger: CTCCGGGAGCGAGATCACCTGCAGCGCCAAAAACAACAAATGCGAGGACTTCATCTGCAACTGTGACCGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000125568.2 |
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| CDS CCA 72 bp | TGTCAAGGTTTTTGTATTCCTTGTTGTACGGGACCTTaGAGAAGCAGATGGCGGCCTCACGGTCACAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: CQGFCIPCCTGP*RSRWRPHGHSC Trigger: GCAACTGTGACCGTGAGGCCGCCATCTGCTTCTCCAAGGTCCCGTACAACAAGGAATACAAAAACCTTGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS CAA 90 bp | AATTTCCCGGTGTCAAGGTTTTTGTATTCCTTGTTGTACGGGACCTaGGAGAAGCAGATGGCGGCCTCACGGTCACAGTTGCAGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: NFPVSRFLYSLLYGT*EKQMAASRSQLQMK Trigger: CTTCATCTGCAACTGTGACCGTGAGGCCGCCATCTGCTTCTCCAAGGTCCCGTACAACAAGGAATACAAAAACCTTGACACCGGGAAATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031495.11 |
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| CDS TCA 72 bp | ATGAGTAGGAGTAAGTGTTGGTGTAGGGGTTGTCTATaGGGAATTTACAGCTTTCCAGCTTCTTGGCCTGAC | + |
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Preference number: 6 (lower is better) Translates to: MSRSKCWCRGCL*GIYSFPASWPD Trigger: GTCAGGCCAAGAAGCTGGAAAGCTGTAAATTCCTCATAGACAACCCCTACACCAACACTTACTCCTACTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031495.11 ENSMUST00000125568.2 |
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