Pregenerated sensors for PLA2G12A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027999Ensembl transcript IDs: ENSMUST00000029629.15, ENSMUST00000061165.9, ENSMUST00000196838.5
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCACCACGACAGCGAGTCTCAGGAAGGCATGCTCTTGGATGTCCTaGTCGCTCCCCATCCCAAGCATGCTCTCTGTTTCTGCCTGGCCC | + |
|
Preference number: 1 (lower is better) Translates to: ATTTASLRKACSWMS*SLPIPSMLSVSAWP Trigger: GGGCCAGGCAGAAACAGAGAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTGGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR CCA 90 bp | TTTGGGGGAGCCACCACGACAGCGAGTCTCAGGAAGGCATGCTCTTaGATGTCCTGCTCGCTCCCCATCCCAAGCATGCTCTCTGTTTCT | + |
|
Preference number: 1 (lower is better) Translates to: FGGATTTASLRKACS*MSCSLPIPSMLSVS Trigger: AGAAACAGAGAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTGGTGGCTCCCCCAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR TCA 90 bp | AGAGGAAGGACATTTGCTCTAAGCGGTTTGAGGAAGCTGGGCTTCTaGATTCTGTGCACATCCCAACACTCAGATGTCCTGGGGCGTCTC | + |
|
Preference number: 1 (lower is better) Translates to: RGRTFALSGLRKLGF*ILCTSQHSDVLGRL Trigger: GAGACGCCCCAGGACATCTGAGTGTTGGGATGTGCACAGAATTCAGAAGCCCAGCTTCCTCAAACCGCTTAGAGCAAATGTCCTTCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR CAA 90 bp | GTTTGGGGGAGCCACCACGACAGCGAGTCTCAGGAAGGCATGCTCTaGGATGTCCTGCTCGCTCCCCATCCCAAGCATGCTCTCTGTTTC | + |
|
Preference number: 2 (lower is better) Translates to: VWGSHHDSESQEGML*DVLLAPHPKHALCF Trigger: GAAACAGAGAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTGGTGGCTCCCCCAAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR-3UTR GCA 90 bp | ACACCAAGTCACACGGGCTTAAGCTTTTCTTCCCAGTTTGGGGGAGCCACCACGTCCTCCATTCTCGCCTaGTCTCCAGCAGTCAGGGTC | + |
|
Preference number: 2 (lower is better) Translates to: TPSHTGLSFSSQFGGATTSSILA*SPAVRV Trigger: GACCCTGACTGCTGGAGAGCAGGCGAGAATGGAGGA...CGTGGTGGCTCCCCCAAACTGGGAAGAAAAGCTTAAGCCCGTGTGACTTGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR-3UTR CCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTGAGGCGAGCTCCTCCTaGTCAGGGCTTCCTGGGTGT | + |
|
Preference number: 2 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAEASSS*SGLPGC Trigger: ACACCCAGGAAGCCCTGACCAGGAGGAGCTCGCCTC...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| 3UTR-3UTR CCA 90 bp | CCAACACTCAGATGTCCTGGGGCGTCTCTCCAGAGAAGTATCAACCGTGATTCCCTTTTCTTCCCAGTTTaGGGGAGCCACCACGACAGC | + |
|
Preference number: 2 (lower is better) Translates to: PTLRCPGASLQRSINRDSLFFPV*GSHHDS Trigger: GCTGTCGTGGTGGCTCCCCCAAACTGGGAAGAAAAG...GGAATCACGGTTGATACTTCTCTGGAGAGACGCCCCAGGACATCTGAGTGTTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR-3UTR CCA 90 bp | CACGACAGCGAGTCTCAGGAAGGCATGCTCTTGGATGTCCTGCTCGCTCCCCATAAAGCATCGGATCTTTaGCAAGGATGGTCCTCCATT | + |
|
Preference number: 2 (lower is better) Translates to: HDSESQEGMLLDVLLAPHKASDL*QGWSSI Trigger: AATGGAGGACCATCCTTGCCAAAGATCCGATGCTTT...ATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR TCA 72 bp | ACCCTGGTGGGTGTAAGCAGTGACCCCTGGCTCATCTaGGGCGAGCTCCTCCTGGTCAGGGCTTCCTGGGTG | + |
|
Preference number: 3 (lower is better) Translates to: TLVGVSSDPWLI*GELLLVRASWV Trigger: CACCCAGGAAGCCCTGACCAGGAGGAGCTCGCCTCAGATGAGCCAGGGGTCACTGCTTACACCCACCAGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| 3UTR GCA 72 bp | GGGGGAGCCACCACGACAGCGAGTCTCAGGAAGGCATaGTCTTGGATGTCCTGCTCGCTCCCCATCCCAAGC | + |
|
Preference number: 3 (lower is better) Translates to: GGATTTASLRKA*SWMSCSLPIPS Trigger: GCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTGGTGGCTCCCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR CCA 72 bp | GCCACCACGACAGCGAGTCTCAGGAAGGCATGCTCTTaGATGTCCTGCTCGCTCCCCATCCCAAGCATGCTC | + |
|
Preference number: 3 (lower is better) Translates to: ATTTASLRKACS*MSCSLPIPSML Trigger: GAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTGGTGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR-3UTR CAA 90 bp | CCAACACTCAGATGTCCTGGGGCGTCTCTCCAGAGAAGTATCAACCGTGATTCCCAGGAAGGCATGCTCTaGGATGTCCTGCTCGCTCCC | + |
|
Preference number: 3 (lower is better) Translates to: PTLRCPGASLQRSINRDSQEGML*DVLLAP Trigger: GGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTG...GGAATCACGGTTGATACTTCTCTGGAGAGACGCCCCAGGACATCTGAGTGTTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR GCA 72 bp | ACAGCGAGTCTCAGGAAGGCATGCTCTTGGATGTCCTaGTCGCTCCCCATCCCAAGCATGCTCTCTGTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: TASLRKACSWMS*SLPIPSMLSVS Trigger: AGAAACAGAGAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| 3UTR CAA 72 bp | AGCCACCACGACAGCGAGTCTCAGGAAGGCATGCTCTaGGATGTCCTGCTCGCTCCCCATCCCAAGCATGCT | + |
|
Preference number: 4 (lower is better) Translates to: SHHDSESQEGML*DVLLAPHPKHA Trigger: AGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTGGTGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR GCA 90 bp | CACGACAGCGAGTCTCAGGAAGGCATGCTCTTGGATGTCCTGCTCGCTCCCCATGCTTCGATCCGTCGCTaGACTTGTACTGGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: HDSESQEGMLLDVLLAPHASIRR*TCTGRA Trigger: GGCTCTGCCAGTACAAGTGCAGCGACGGATCGAAGC...ATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR GCA 90 bp | TGCTCTTGGATGTCCTGCTCGCTCCCCATCCCAAGCATGCTCTCTGTTTCTGCCATCTGTCGTGCTGGTTaGAGCACTTGGTCAGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: CSWMSCSLPIPSMLSVSAICRAG*STWSGK Trigger: CTTCCCTGACCAAGTGCTGCAACCAGCACGACAGAT...GGCAGAAACAGAGAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR TCA 90 bp | TGCTCTTGGATGTCCTGCTCGCTCCCCATCCCAAGCATGCTCTCTGTTTCTGCCTGCAGCCTAAATGGATaGCGCTGTCAAAGAGGAGCT | + |
|
Preference number: 4 (lower is better) Translates to: CSWMSCSLPIPSMLSVSACSLNG*RCQRGA Trigger: AGCTCCTCTTTGACAGCGTCATCCATTTAGGCTGCA...GGCAGAAACAGAGAGCATGCTTGGGATGGGGAGCGAGCAGGACATCCAAGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR GCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTGCTTCGATCCGTCGCTaGACTTGTACTGGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAASIRR*TCTGRA Trigger: GGCTCTGCCAGTACAAGTGCAGCGACGGATCGAAGC...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR GCA 90 bp | ACACTCAGATGTCCTGGGGCGTCTCTCCAGAGAAGTATCAACCGTGATTCCAACATAACGACACCAGCATaGAGCCCGCTGGCTGTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: TLRCPGASLQRSINRDSNITTPA*SPLAVQ Trigger: CTGGACAGCCAGCGGGCTGCATGCTGGTGTCGTTAT...GTTGGAATCACGGTTGATACTTCTCTGGAGAGACGCCCCAGGACATCTGAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR CCA 90 bp | ACACCAAGTCACACGGGCTTAAGCTTTTCTTCCCAGTTTGGGGGAGCCACCACGATGAACGCCAAACAGTaGCGAGCCACAGCCATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: TPSHTGLSFSSQFGGATTMNAKQ*RATAIW Trigger: CCAAATGGCTGTGGCTCGCCACTGTTTGGCGTTCAT...CGTGGTGGCTCCCCCAAACTGGGAAGAAAAGCTTAAGCCCGTGTGACTTGGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR TCA 90 bp | GATCTTTGGCAAGGATGGTCCTCCATTCTCGCCTGCTCTCCAGCAGTCAGGGTCATACCTATGTTCAGATaGACGCCAAACAGTGGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: DLWQGWSSILACSPAVRVIPMFR*TPNSGE Trigger: CTCGCCACTGTTTGGCGTTCATCTGAACATAGGTAT...GACCCTGACTGCTGGAGAGCAGGCGAGAATGGAGGACCATCCTTGCCAAAGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR CCA 90 bp | ACACCAAGTCACACGGGCTTAAGCTTTTCTTCCCAGTTTGGGGGAGCCACCACGCGTCTCTGCAGATCTTaGAGAGGCAGTACTGGAACT | + |
|
Preference number: 4 (lower is better) Translates to: TPSHTGLSFSSQFGGATTRLCRS*RGSTGT Trigger: AGTTCCAGTACTGCCTCTCCAAGATCTGCAGAGACG...CGTGGTGGCTCCCCCAAACTGGGAAGAAAAGCTTAAGCCCGTGTGACTTGGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR GCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTATCTGTCGTGCTGGTTaGAGCACTTGGTCAGGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAICRAG*STWSGK Trigger: CTTCCCTGACCAAGTGCTGCAACCAGCACGACAGAT...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR CCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTATGAACGCCAAACAGTaGCGAGCCACAGCCATTTGG | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAMNAKQ*RATAIW Trigger: CCAAATGGCTGTGGCTCGCCACTGTTTGGCGTTCAT...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR CCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTCGTCTCTGCAGATCTTaGAGAGGCAGTACTGGAACT | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHARLCRS*RGSTGT Trigger: AGTTCCAGTACTGCCTCTCCAAGATCTGCAGAGACG...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR TCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTATACCTATGTTCAGATaGACGCCAAACAGTGGCGAG | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAIPMFR*TPNSGE Trigger: CTCGCCACTGTTTGGCGTTCATCTGAACATAGGTAT...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR CCA 90 bp | AACCTTGTAGTTGTGAGTAACATATTTATACCTATCTTAGTGGGCTTCAGAGAACCTGCCCACGCGCAGTaGCCAGCAGCAGGAGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: NLVVVSNIFIPILVGFREPAHAQ*PAAGGG Trigger: TCCTCCTCCTGCTGCTGGCCACTGCGCGTGGGCAGG...TTCTCTGAAGCCCACTAAGATAGGTATAAATATGTTACTCACAACTACAAGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR CCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTGCCATTTGGTGGAGATaGTTTATATCCATAGCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAAIWWR*FISIAW Trigger: CCACGCTATGGATATAAACCATCTCCACCAAATGGC...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR CCA 90 bp | ACACTCAGATGTCCTGGGGCGTCTCTCCAGAGAAGTATCAACCGTGATTCCAACGCCACAGCCATTTGGTaGAGATGGTTTATATCCATA | + |
|
Preference number: 4 (lower is better) Translates to: TLRCPGASLQRSINRDSNATAIW*RWFISI Trigger: TATGGATATAAACCATCTCCACCAAATGGCTGTGGC...GTTGGAATCACGGTTGATACTTCTCTGGAGAGACGCCCCAGGACATCTGAGTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR CCA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTGCCACAGCCATTTGGTaGAGATGGTTTATATCCATA | + |
|
Preference number: 4 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAATAIW*RWFISI Trigger: TATGGATATAAACCATCTCCACCAAATGGCTGTGGC...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR CCA 90 bp | AACCTTGTAGTTGTGAGTAACATATTTATACCTATCTTAGTGGGCTTCAGAGAAGCCATTTGGTGGAGATaGTTTATATCCATAGCGTGG | + |
|
Preference number: 4 (lower is better) Translates to: NLVVVSNIFIPILVGFREAIWWR*FISIAW Trigger: CCACGCTATGGATATAAACCATCTCCACCAAATGGC...TTCTCTGAAGCCCACTAAGATAGGTATAAATATGTTACTCACAACTACAAGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR CAA 90 bp | TCCCAACACTCAGATGTCCTGGGGCGTCTCTCCAGAGAAGTATCAACCGTGATTCCGTTGCGGATGGTCTaGAGGGTGGCCCTCCAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: SQHSDVLGRLSREVSTVIPLRMV*RVALQS Trigger: CGACTGGAGGGCCACCCTCAAGACCATCCGCAACGG...AATCACGGTTGATACTTCTCTGGAGAGACGCCCCAGGACATCTGAGTGTTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS-3UTR CAA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTCCGTTGCGGATGGTCTaGAGGGTGGCCCTCCAGTCG | + |
|
Preference number: 5 (lower is better) Translates to: QPKWMTLSKRSSTVVSHAPLRMV*RVALQS Trigger: CGACTGGAGGGCCACCCTCAAGACCATCCGCAACGG...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS-3UTR CAA 90 bp | CACGACAGCGAGTCTCAGGAAGGCATGCTCTTGGATGTCCTGCTCGCTCCCCATCTGTCCAGGTATGGCTaGCAGCCTAAATGGATGACG | + |
|
Preference number: 5 (lower is better) Translates to: HDSESQEGMLLDVLLAPHLSRYG*QPKWMT Trigger: CGTCATCCATTTAGGCTGCAAGCCATACCTGGACAG...ATGGGGAGCGAGCAGGACATCCAAGAGCATGCCTTCCTGAGACTCGCTGTCGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS CCA 90 bp | TGGCGAGCCACAGCCATTTGGTGGAGATGGTTTATATCCATAGCGTaGAACAGGCTTCGATCCGTCGCTGCACTTGTACTGGCAGAGCCC | + |
|
Preference number: 5 (lower is better) Translates to: WRATAIWWRWFISIA*NRLRSVAALVLAEP Trigger: GGGCTCTGCCAGTACAAGTGCAGCGACGGATCGAAGCCTGTTCCACGCTATGGATATAAACCATCTCCACCAAATGGCTGTGGCTCGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029629.15 ENSMUST00000196838.5 |
||
| CDS-3UTR CAA 90 bp | CAGCCTAAATGGATGACGCTGTCAAAGAGGAGCTCCACCGTTGTCTCACATGCTACGTCTCTGCAGATCTaGGAGAGGCAGTACTGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: QPKWMTLSKRSSTVVSHATSLQI*ERQYWN Trigger: GTTCCAGTACTGCCTCTCCAAGATCTGCAGAGACGT...AGCATGTGAGACAACGGTGGAGCTCCTCTTTGACAGCGTCATCCATTTAGGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196838.5 |
||
| CDS TCA 90 bp | ATGGTTTATATCCATAGCGTGGAACAGGCTTCGATCTTCCAATCCTaGGACCTTCTTCTTCTTCTGTCCCGGAACAGCCTACAGGAAAGG | + |
|
Preference number: 5 (lower is better) Translates to: MVYIHSVEQASIFQS*DLLLLLSRNSLQER Trigger: CCTTTCCTGTAGGCTGTTCCGGGACAGAAGAAGAAGAAGGTCTCAGGATTGGAAGATCGAAGCCTGTTCCACGCTATGGATATAAACCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061165.9 |
||
| CDS-3UTR CAA 90 bp | ACCTATCTTAGTGGGCTTCAGAGAAACAACACGTTATGTATAATAAAAATGGAGACGTCTCTGCAGATCTaGGAGAGGCAGTACTGGAAC | + |
|
Preference number: 5 (lower is better) Translates to: TYLSGLQRNNTLCIIKMETSLQI*ERQYWN Trigger: GTTCCAGTACTGCCTCTCCAAGATCTGCAGAGACGT...CTCCATTTTTATTATACATAACGTGTTGTTTCTCTGAAGCCCACTAAGATAGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029629.15 |
||
| CDS CCA 72 bp | CGTGGAACAGGCTTCGATCCGTCGCTGCACTTGTACTaGCAGAGCCCGTCCTCCCCGCCCAGCAGGTCCAGC | + |
|
Preference number: 6 (lower is better) Translates to: RGTGFDPSLHLY*QSPSSPPSRSS Trigger: GCTGGACCTGCTGGGCGGGGAGGACGGGCTCTGCCAGTACAAGTGCAGCGACGGATCGAAGCCTGTTCCACG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029629.15 ENSMUST00000196838.5 |
||
| CDS TCA 72 bp | AGGAGCTCCACCGTTGTCTCACATGCCTGGACGTTCTaGGATAGTCCGAGCGTCTTCTGCACGTCTCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: RSSTVVSHAWTF*DSPSVFCTSLQ Trigger: CTGCAGAGACGTGCAGAAGACGCTCGGACTATCTCAGAACGTCCAGGCATGTGAGACAACGGTGGAGCTCCT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029629.15 ENSMUST00000061165.9 |
||
| CDS GCA 72 bp | AGAGGCAGTACTGGAACTCCTCGTCACAGTCGTTCTTaGTTTTCCCGCAGGTCTCGTAGCATCTGTCGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: RGSTGTPRHSRS*FSRRSRSICRA Trigger: AGCACGACAGATGCTACGAGACCTGCGGGAAAAGCAAGAACGACTGTGACGAGGAGTTCCAGTACTGCCTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029629.15 ENSMUST00000061165.9 ENSMUST00000196838.5 |
||
| CDS TCA 72 bp | ATCCATAGCGTGGAACAGGCTTCGATCTTCCAATCCTaGGACCTTCTTCTTCTTCTGTCCCGGAACAGCCTA | + |
|
Preference number: 6 (lower is better) Translates to: IHSVEQASIFQS*DLLLLLSRNSL Trigger: TAGGCTGTTCCGGGACAGAAGAAGAAGAAGGTCTCAGGATTGGAAGATCGAAGCCTGTTCCACGCTATGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000061165.9 |
||
| CDS CCA 72 bp | GGAAGGGATACCTATGTTCAGATGAACGCCAAACAGTaGCGAGCCACAGCCATTTGGTGGAGATGGTTTATA | + |
|
Preference number: 6 (lower is better) Translates to: GRDTYVQMNAKQ*RATAIWWRWFI Trigger: TATAAACCATCTCCACCAAATGGCTGTGGCTCGCCACTGTTTGGCGTTCATCTGAACATAGGTATCCCTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029629.15 ENSMUST00000061165.9 ENSMUST00000196838.5 |
||