Pregenerated sensors for PKP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041957Ensembl transcript IDs: ENSMUST00000039408.3
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCAGATaGGCAACTAGGATAGAAACATCATTCACACACTCTTTCTCAGGT | + |
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Preference number: 1 (lower is better) Translates to: LVNTHLWLIKEVTCR*ATRIETSFTHSFSG Trigger: ACCTGAGAAAGAGTGTGTGAATGATGTTTCTATCCTAGTTGCTCATCTGCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR GCA 90 bp | AATGATGCCCATTATCTGCACAGGGTAAAACTGATTCCATACTGGTaGAACCTGGTGGAAGTCTTCAGGACACTTAACAAAATTATATTC | + |
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Preference number: 1 (lower is better) Translates to: NDAHYLHRVKLIPYW*NLVEVFRTLNKIIF Trigger: GAATATAATTTTGTTAAGTGTCCTGAAGACTTCCACCAGGTTGCACCAGTATGGAATCAGTTTTACCCTGTGCAGATAATGGGCATCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR-3UTR CCA 90 bp | ATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTCATACTGGTGCAACCTaGTGGAAGTCTTCAGGACAC | + |
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Preference number: 2 (lower is better) Translates to: IIHTLFLRCSSGAHSHEFHTGAT*WKSSGH Trigger: GTGTCCTGAAGACTTCCACCAGGTTGCACCAGTATG...AAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR-3UTR TCA 90 bp | GAAACATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGACAAAGCATGCTTTTTaGGGTTTCTTGGGTCAGTTA | + |
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Preference number: 2 (lower is better) Translates to: ETSFTHSFSGVPPVHTHTTKHAF*GFLGQL Trigger: TAACTGACCCAAGAAACCTCAAAAAGCATGCTTTGT...CGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR-3UTR CCA 90 bp | CCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACAACTGGTGCAACCTGGTaGAAGTCTTCAGGACACTTA | + |
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Preference number: 2 (lower is better) Translates to: PSMLYSFISVLSNTSEHTTGATW*KSSGHL Trigger: TAAGTGTCCTGAAGACTTCCACCAGGTTGCACCAGT...TGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR GCA 72 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTaGACACTCACACGAGTTTGCACATACTATAAGCCT | + |
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Preference number: 3 (lower is better) Translates to: HHSHTLSQVFLR*TLTRVCTYYKP Trigger: AGGCTTATAGTATGTGCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR CCA 72 bp | GCCCATTATCTGCACAGGGTAAAACTGATTCCATACTaGTGCAACCTGGTGGAAGTCTTCAGGACACTTAAC | + |
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Preference number: 3 (lower is better) Translates to: AHYLHRVKLIPY*CNLVEVFRTLN Trigger: GTTAAGTGTCCTGAAGACTTCCACCAGGTTGCACCAGTATGGAATCAGTTTTACCCTGTGCAGATAATGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR TCA 72 bp | ACACACCTCTGGCTCATTAAGGAAGTGACATGCAGATaGGCAACTAGGATAGAAACATCATTCACACACTCT | + |
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Preference number: 3 (lower is better) Translates to: THLWLIKEVTCR*ATRIETSFTHS Trigger: AGAGTGTGTGAATGATGTTTCTATCCTAGTTGCTCATCTGCATGTCACTTCCTTAATGAGCCAGAGGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| 3UTR GCA 72 bp | CATTATCTGCACAGGGTAAAACTGATTCCATACTGGTaGAACCTGGTGGAAGTCTTCAGGACACTTAACAAA | + |
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Preference number: 3 (lower is better) Translates to: HYLHRVKLIPYW*NLVEVFRTLNK Trigger: TTTGTTAAGTGTCCTGAAGACTTCCACCAGGTTGCACCAGTATGGAATCAGTTTTACCCTGTGCAGATAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTCCGCACTGTGGCTGGTaGCAGGAGGGTGGGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: HHSHTLSQVFLRCTLTRVPHCGW*QEGGWA Trigger: TGCCCACCCACCCTCCTGGCACCAGCCACAGTGCGG...AACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTCATGTGCATCCCCGCTaGCCACGGCAGCCTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: HHSHTLSQVFLRCTLTRVHVHPR*PRQPGL Trigger: CAGGCCAGGCTGCCGTGGGCAGCGGGGATGCACATG...AACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | TATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATGTGGCCTGCGGGCTGTaGCAGCCTGGCGTAGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: YSFISVLSNTSEHTPLAHVACGL*QPGVGP Trigger: TGGGCCTACGCCAGGCTGGCACAGCCCGCAGGCCAC...ATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCCGGCCAGCCTCAGTCTaGCCTCGGAGGGCAAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCRPASV*PRRARP Trigger: TGGCCTTGCCCTCCGAGGCCAGACTGAGGCTGGCCG...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | GAAACATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGCTGCTCTGCGTGCTTTaGAGCCGAGCCTGGCTCACG | + |
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Preference number: 4 (lower is better) Translates to: ETSFTHSFSGVPPVHTHTLLCVL*SRAWLT Trigger: CGTGAGCCAGGCTCGGCTTCAAAGCACGCAGAGCAG...CGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | GAAACATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGCTGGGAACTGTACTGTaGTGCTGCTCTCCCCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: ETSFTHSFSGVPPVHTHTLGTVL*CCSPPA Trigger: CGCTGGGGGAGAGCAGCAGCACAGTACAGTTCCCAG...CGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTATCGGGCCGCCTCCTaGTGTGAGGTTCTGGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: HHSHTLSQVFLRCTLTRVYRAAS*CEVLES Trigger: GCTCTCCAGAACCTCACAGCAGGAGGCGGCCCGATA...AACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | CCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACATGCGGACTGAGCTCCTaGGCCAGGAGGAGCGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: PSMLYSFISVLSNTSEHTCGLSS*ARRSGR Trigger: CCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCCGCA...TGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | CATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTGCTCTGCATTCCCCAGCTaGGCGTCAGCGAAGACACTC | + |
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Preference number: 4 (lower is better) Translates to: HSHTLSQVFLRCTLTRVCSAFPS*ASAKTL Trigger: GAGTGTCTTCGCTGACGCCCAGCTGGGGAATGCAGA...GCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | TATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATCTGGTGCCAGGAGGGTaGGTGGGCATTGTGGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: YSFISVLSNTSEHTPLAHLVPGG*VGIVGL Trigger: CAAGCCCACAATGCCCACCCACCCTCCTGGCACCAG...ATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTCCTGCTGTGAGGTTCTaGAGAGCCCCAAGTGATGCC | + |
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Preference number: 4 (lower is better) Translates to: HHSHTLSQVFLRCTLTRVPAVRF*RAPSDA Trigger: GGCATCACTTGGGGCTCTCCAGAACCTCACAGCAGG...AACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | GATTTGCCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACATAGCGTGGCAGGGTaGGGCGCCCACCAGGCACCA | + |
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Preference number: 4 (lower is better) Translates to: DLPSMLYSFISVLSNTSEHSVAG*GAHQAP Trigger: TGGTGCCTGGTGGGCGCCTCACCCTGCCACGCTATG...TTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTGGATCTCTCCTCCACTaGCTTCTGGGAACTGTACTG | + |
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Preference number: 4 (lower is better) Translates to: HHSHTLSQVFLRCTLTRVGSLLH*LLGTVL Trigger: CAGTACAGTTCCCAGAAGTCAGTGGAGGAGAGATCC...AACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | CATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTCTGGAGAGCCCCAAGTaGTGCCTCTTGGGTATAGTT | + |
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Preference number: 4 (lower is better) Translates to: HHSHTLSQVFLRCTLTRVLESPK*CLLGIV Trigger: AACTATACCCAAGAGGCATCACTTGGGGCTCTCCAG...AACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCGGTCATTTCGATGTCTaGATTCCCCAGCTGGGCGTC | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCGHFDV*IPQLGV Trigger: GACGCCCAGCTGGGGAATGCAGACATCGAAATGACC...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | GAAACATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGCAGGGAAAGATTCCGTaGCAAATTCCTCAGCAGGGA | + |
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Preference number: 4 (lower is better) Translates to: ETSFTHSFSGVPPVHTHTQGKIP*QIPQQG Trigger: TCCCTGCTGAGGAATTTGTCACGGAATCTTTCCCTG...CGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | GGTGCAACCTGGTGGAAGTCTTCAGGACACTTAACAAAATTATATTCTGATTATGCTCCCGCAGGCTACTaGGGACTGAGCTCCTGGGCC | + |
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Preference number: 4 (lower is better) Translates to: GATWWKSSGHLTKLYSDYAPAGY*GLSSWA Trigger: GGCCCAGGAGCTCAGTCCGCAGTAGCCTGCGGGAGC...ATAATCAGAATATAATTTTGTTAAGTGTCCTGAAGACTTCCACCAGGTTGCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCTGCCTCGAAGTTGATTaGCCCTTTTCCGTGCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCCLEVD*PFSVLQ Trigger: CTGAAGCACGGAAAAGGGTCAATCAACTTCGAGGCA...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | CATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTGCTGTGGCCTTATCATCTaGCTGGTAGTCTGCAATAGT | + |
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Preference number: 4 (lower is better) Translates to: HSHTLSQVFLRCTLTRVCCGLII*LVVCNS Trigger: ACTATTGCAGACTACCAGCCAGATGATAAGGCCACA...GCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCCCACTCAATGCCATGTaGATTGCTCCTTTCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCPLNAM*IAPFLW Trigger: CCAGAGGAAAGGAGCAATCCACATGGCATTGAGTGG...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | CATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTGCAGACCATTTTCCTTTTaGACAACCATTCGAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: HSHTLSQVFLRCTLTRVCRPFSF*TTIRAT Trigger: GGTGGCTCGAATGGTTGTCCAAAAGGAAAATGGTCT...GCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCGGACCAATGAGTCAATaGGACCATCACACCTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCGPMSQ*DHHTFS Trigger: TGAGAAGGTGTGATGGTCTCATTGACTCATTGGTCC...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | GAAACATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGATTGCTCCTTTCCTCTaGCATCTGCAAGTCTTGGTA | + |
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Preference number: 4 (lower is better) Translates to: ETSFTHSFSGVPPVHTHTIAPFL*HLQVLV Trigger: TACCAAGACTTGCAGATGCCAGAGGAAAGGAGCAAT...CGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGATGTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | CATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTGCGGCATCTGCAAGTCTTaGTATTGCTCTTTTAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: HSHTLSQVFLRCTLTRVCGICKS*YCSFSF Trigger: GAAACTAAAAGAGCAATACCAAGACTTGCAGATGCC...GCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | CATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTGCTCCTTAGGCATCCAGTaGCATTGTAGAATATATCAA | + |
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Preference number: 4 (lower is better) Translates to: HSHTLSQVFLRCTLTRVCSLGIQ*HCRIYQ Trigger: TTGATATATTCTACAATGTCACTGGATGCCTAAGGA...GCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCATCTTCCGTGTATGCTaGAGACCATTTTCCTTTTGG | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCIFRVC*RPFSFW Trigger: CCAAAAGGAAAATGGTCTTCAGCATACACGGAAGAT...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | GGTGCAACCTGGTGGAAGTCTTCAGGACACTTAACAAAATTATATTCTGATTATTCTCTTCCAACAAGCTaGCCGCACTGTGGCTGGTGC | + |
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Preference number: 4 (lower is better) Translates to: GATWWKSSGHLTKLYSDYSLPTS*PHCGWC Trigger: GCACCAGCCACAGTGCGGGCAGCTTGTTGGAAGAGA...ATAATCAGAATATAATTTTGTTAAGTGTCCTGAAGACTTCCACCAGGTTGCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR TCA 90 bp | CCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACACACTCTCTGTCAAGGTaGGCAAGGCTTCTGTTATCA | + |
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Preference number: 4 (lower is better) Translates to: PSMLYSFISVLSNTSEHTHSLSR*ARLLLS Trigger: TGATAACAGAAGCCTTGCTCACCTTGACAGAGAGTG...TGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | GATTTGCCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAAGCCACAGCCACTCAATaGCATGTGGATTGCTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: DLPSMLYSFISVLSNTSEATATQ*HVDCSF Trigger: AAAGGAGCAATCCACATGGCATTGAGTGGCTGTGGC...TTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | ATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTTTAGCAATTTCATTCTaGAGGGAAAGATTCCGTGAC | + |
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Preference number: 4 (lower is better) Translates to: IIHTLFLRCSSGAHSHEFLAISF*RERFRD Trigger: GTCACGGAATCTTTCCCTGCAGAATGAAATTGCTAA...AAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | TCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTAAGGAAGTGACATGCGTTCAGAAGGTCTCGTaGATTCTGGTAACTATTTTG | + |
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Preference number: 4 (lower is better) Translates to: SCPTLVNTHLWLIKEVTCVQKVS*ILVTIL Trigger: CAAAATAGTTACCAGAATGCACGAGACCTTCTGAAC...GCATGTCACTTCCTTAATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | GATTTGCCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAAAATCAAGCAAGCCATTaGCTTTGGGGTAGTCGCCTT | + |
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Preference number: 4 (lower is better) Translates to: DLPSMLYSFISVLSNTSENQASH*LWGSRL Trigger: AAGGCGACTACCCCAAAGCCAATGGCTTGCTTGATT...TTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | GATTTGCCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAAACACACAGTTCTCTGTaGCCTTATCATCTGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: DLPSMLYSFISVLSNTSETHSSL*PYHLAG Trigger: ACCAGCCAGATGATAAGGCCACAGAGAACTGTGTGT...TTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CCA 90 bp | TATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTTGTTACTGTTAGTCTaGATATTCCGGTTTTGCATG | + |
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Preference number: 4 (lower is better) Translates to: YSFISVLSNTSEHTPLAHLLLLV*IFRFCM Trigger: CATGCAAAACCGGAATATCCAGACTAACAGTAACAA...ATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR GCA 90 bp | TATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAACACACACCTCTGGCTCATTGCAAGTCTTGGTATTaGTCTTTTAGTTTCCTACTT | + |
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Preference number: 4 (lower is better) Translates to: YSFISVLSNTSEHTPLAHCKSWY*SFSFLL Trigger: AAGTAGGAAACTAAAAGAGCAATACCAAGACTTGCA...ATGAGCCAGAGGTGTGTGTTCACTAGTGTTGGACAGGACAGAGATGAAGGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 90 bp | CCTGGCGTAGGCCCAGGATCTCTGAGCGAGCATAGCGTGGCAGGGTaGGGCGCCCACCAGGCACCACGTGGCTCCGCCAGGCATACTGGT | + |
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Preference number: 5 (lower is better) Translates to: PGVGPGSLSEHSVAG*GAHQAPRGSARHTG Trigger: ACCAGTATGCCTGGCGGAGCCACGTGGTGCCTGGTGGGCGCCTCACCCTGCCACGCTATGCTCGCTCAGAGATCCTGGGCCTACGCCAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | GGCTACTGCGGACTGAGCTCCTGGGCCAGGAGGAGCGGGCGGTTCTaGTCTGCGTGCTTTGAAGCCGAGCCTGGCTCACGCGCACAGTGG | + |
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Preference number: 5 (lower is better) Translates to: GYCGLSSWARRSGRF*SACFEAEPGSRAQW Trigger: CCACTGTGCGCGTGAGCCAGGCTCGGCTTCAAAGCACGCAGAGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCCGCAGTAGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | CCTGGCCTGCGGTGGTCAGCATTCTTCCTGGCTCCCGCAGGCTACTaGGGACTGAGCTCCTGGGCCAGGAGGAGCGGGCGGTTCTGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PGLRWSAFFLAPAGY*GLSSWARRSGRFCS Trigger: AGAGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCCGCAGTAGCCTGCGGGAGCCAGGAAGAATGCTGACCACCGCAGGCCAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | GCTGGGCGTCAGCGAAGACACTCCTGTCCCCATGTGCATCCCCGCTaGCCACGGCAGCCTGGCCTGCGGTGGTCAGCATTCTTCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: AGRQRRHSCPHVHPR*PRQPGLRWSAFFLA Trigger: AGCCAGGAAGAATGCTGACCACCGCAGGCCAGGCTGCCGTGGGCAGCGGGGATGCACATGGGGACAGGAGTGTCTTCGCTGACGCCCAGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | GAAGCCGAGCCTGGCTCACGCGCACAGTGGTCTCTTCCAACAAGCTaGCCGCACTGTGGCTGGTGCCAGGAGGGTGGGTGGGCATTGTGG | + |
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Preference number: 5 (lower is better) Translates to: EAEPGSRAQWSLPTS*PHCGWCQEGGWALW Trigger: CCACAATGCCCACCCACCCTCCTGGCACCAGCCACAGTGCGGGCAGCTTGTTGGAAGAGACCACTGTGCGCGTGAGCCAGGCTCGGCTTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | GGACTGAGCTCCTGGGCCAGGAGGAGCGGGCGGTTCTGCTCTGCGTaGTTTGAAGCCGAGCCTGGCTCACGCGCACAGTGGTCTCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: GLSSWARRSGRFCSA*FEAEPGSRAQWSLP Trigger: TGGAAGAGACCACTGTGCGCGTGAGCCAGGCTCGGCTTCAAAGCACGCAGAGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 90 bp | GAGCTCCTGGGCCAGGAGGAGCGGGCGGTTCTGCTCTGCGTGCTTTaGAGCCGAGCCTGGCTCACGCGCACAGTGGTCTCTTCCAACAAG | + |
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Preference number: 5 (lower is better) Translates to: ELLGQEERAVLLCVL*SRAWLTRTVVSSNK Trigger: CTTGTTGGAAGAGACCACTGTGCGCGTGAGCCAGGCTCGGCTTCAAAGCACGCAGAGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 90 bp | CAACCATTCGAGCCACCAATGTGGGTATCGGGCCGCCTCCTGCTGTaGGGTTCTGGAGAGCCCCAAGTGATGCCTCTTGGGTATAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: QPFEPPMWVSGRLLL*GSGEPQVMPLGYSF Trigger: GAAACTATACCCAAGAGGCATCACTTGGGGCTCTCCAGAACCTCACAGCAGGAGGCGGCCCGATACCCACATTGGTGGCTCGAATGGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | TGCATCCAGCATATTCACAGCTCTCTCCAAGGTCATTTCGATGTCTaGATTCCCCAGCTGGGCGTCAGCGAAGACACTCCTGTCCCCATG | + |
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Preference number: 5 (lower is better) Translates to: CIQHIHSSLQGHFDV*IPQLGVSEDTPVPM Trigger: CATGGGGACAGGAGTGTCTTCGCTGACGCCCAGCTGGGGAATGCAGACATCGAAATGACCTTGGAGAGAGCTGTGAATATGCTGGATGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | ATGCAGCTCTGTATGTGCCCACAGAGAGTAAAGGAGGACAGAGGCTaGTTTGCTGGCCTTGTTGGGGGCATAGCCTTCCCCTATGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: MQLCMCPQRVKEDRG*FAGLVGGIAFPYAD Trigger: ATCAGCATAGGGGAAGGCTATGCCCCCAACAAGGCCAGCAAAGCAGCCTCTGTCCTCCTTTACTCTCTGTGGGCACATACAGAGCTGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | TTTCTTAAACTGAGCCTTCTTATAGGCGTGATGCAGCTCTGTATGTaGCCACAGAGAGTAAAGGAGGACAGAGGCTGCTTTGCTGGCCTT | + |
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Preference number: 5 (lower is better) Translates to: FLKLSLLIGVMQLCM*PQRVKEDRGCFAGL Trigger: AAGGCCAGCAAAGCAGCCTCTGTCCTCCTTTACTCTCTGTGGGCACATACAGAGCTGCATCACGCCTATAAGAAGGCTCAGTTTAAGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CAA 90 bp | ATCATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTTCAATGCCATGTGGATaGCTCCTTTCCTCTGGCATC | + |
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Preference number: 5 (lower is better) Translates to: IIHTLFLRCSSGAHSHEFSMPCG*LLSSGI Trigger: GATGCCAGAGGAAAGGAGCAATCCACATGGCATTGA...AAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CAA 90 bp | CATTCACACACTCTTTCTCAGGTGTTCCTCCGGTGCACACTCACACGAGTTTGCTTGGCAGTCCGGCTGTaGACAAAGTCTGTTTTCTTA | + |
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Preference number: 5 (lower is better) Translates to: HSHTLSQVFLRCTLTRVCLAVRL*TKSVFL Trigger: TAAGAAAACAGACTTTGTCAACAGCCGGACTGCCAA...GCAAACTCGTGTGAGTGTGCACCGGAGGAACACCTGAGAAAGAGTGTGTGAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 90 bp | TCCTCCCATCGGGGCCAGCAGAGCTCATGTTCCTTAGGCATCCAGTaGCATTGTAGAATATATCAAAATCAAGCAAGCCATTGGCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: SSHRGQQSSCSLGIQ*HCRIYQNQASHWLW Trigger: CCAAAGCCAATGGCTTGCTTGATTTTGATATATTCTACAATGTCACTGGATGCCTAAGGAACATGAGCTCTGCTGGCCCCGATGGGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 90 bp | TATGAAGGTAGCTGCGGCAGAGATCTTGGATACTGGTACATGGTCTaGATCCAGCATATTCACAGCTCTCTCCAAGGTCATTTCGATGTC | + |
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Preference number: 5 (lower is better) Translates to: YEGSCGRDLGYWYMV*IQHIHSSLQGHFDV Trigger: GACATCGAAATGACCTTGGAGAGAGCTGTGAATATGCTGGATGCAGACCATGTACCAGTATCCAAGATCTCTGCCGCAGCTACCTTCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CAA 90 bp | GATTTGCCATCAATGCTTTATTCCTTCATCTCTGTCCTGTCCAACACTAGTGAAGTGGGCATTGTGGGCTaGAGTGGGCCATTGTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: DLPSMLYSFISVLSNTSEVGIVG*SGPLSK Trigger: CTTCGACAATGGCCCACTCAAGCCCACAATGCCCAC...TTCACTAGTGTTGGACAGGACAGAGATGAAGGAATAAAGCATTGATGGCAAATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CAA 90 bp | GCAACCTGGTGGAAGTCTTCAGGACACTTAACAAAATTATATTCTGATTATTCACTGGATATTCCGGTTTaGCATGTAGATACTCTGGGA | + |
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Preference number: 5 (lower is better) Translates to: ATWWKSSGHLTKLYSDYSLDIPV*HVDTLG Trigger: TCCCAGAGTATCTACATGCAAAACCGGAATATCCAG...TGAATAATCAGAATATAATTTTGTTAAGTGTCCTGAAGACTTCCACCAGGTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS-3UTR CAA 90 bp | GCAACCTGGTGGAAGTCTTCAGGACACTTAACAAAATTATATTCTGATTATTCAAAGACCATTTTCCTTTaGGACAACCATTCGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: ATWWKSSGHLTKLYSDYSKTIFL*DNHSSH Trigger: GTGGCTCGAATGGTTGTCCAAAAGGAAAATGGTCTT...TGAATAATCAGAATATAATTTTGTTAAGTGTCCTGAAGACTTCCACCAGGTTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 72 bp | GGCCCAGGATCTCTGAGCGAGCATAGCGTGGCAGGGTaGGGCGCCCACCAGGCACCACGTGGCTCCGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: GPGSLSEHSVAG*GAHQAPRGSAR Trigger: CCTGGCGGAGCCACGTGGTGCCTGGTGGGCGCCTCACCCTGCCACGCTATGCTCGCTCAGAGATCCTGGGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | CCCATGTGCATCCCCGCTGCCCACGGCAGCCTGGCCTaGGGTGGTCAGCATTCTTCCTGGCTCCCGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: PMCIPAAHGSLA*GGQHSSWLPQA Trigger: AGCCTGCGGGAGCCAGGAAGAATGCTGACCACCGCAGGCCAGGCTGCCGTGGGCAGCGGGGATGCACATGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CCA 72 bp | TTCCTGGCTCCCGCAGGCTACTGCGGACTGAGCTCCTaGGCCAGGAGGAGCGGGCGGTTCTGCTCTGCGTGC | + |
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Preference number: 6 (lower is better) Translates to: FLAPAGYCGLSS*ARRSGRFCSAC Trigger: GCACGCAGAGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCCGCAGTAGCCTGCGGGAGCCAGGAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | GGACTGAGCTCCTGGGCCAGGAGGAGCGGGCGGTTCTaGTCTGCGTGCTTTGAAGCCGAGCCTGGCTCACGC | + |
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Preference number: 6 (lower is better) Translates to: GLSSWARRSGRF*SACFEAEPGSR Trigger: GCGTGAGCCAGGCTCGGCTTCAAAGCACGCAGAGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 72 bp | CAGCATTCTTCCTGGCTCCCGCAGGCTACTGCGGACTaGGCTCCTGGGCCAGGAGGAGCGGGCGGTTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: QHSSWLPQATAD*APGPGGAGGSA Trigger: AGCAGAACCGCCCGCTCCTCCTGGCCCAGGAGCTCAGTCCGCAGTAGCCTGCGGGAGCCAGGAAGAATGCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | CCTGGCTCACGCGCACAGTGGTCTCTTCCAACAAGCTaGCCGCACTGTGGCTGGTGCCAGGAGGGTGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: PGSRAQWSLPTS*PHCGWCQEGGW Trigger: CCACCCACCCTCCTGGCACCAGCCACAGTGCGGGCAGCTTGTTGGAAGAGACCACTGTGCGCGTGAGCCAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | CAGCGAAGACACTCCTGTCCCCATGTGCATCCCCGCTaGCCACGGCAGCCTGGCCTGCGGTGGTCAGCATTC | + |
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Preference number: 6 (lower is better) Translates to: QRRHSCPHVHPR*PRQPGLRWSAF Trigger: GAATGCTGACCACCGCAGGCCAGGCTGCCGTGGGCAGCGGGGATGCACATGGGGACAGGAGTGTCTTCGCTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CCA 72 bp | CGCACAGTGGTCTCTTCCAACAAGCTGCCCGCACTGTaGCTGGTGCCAGGAGGGTGGGTGGGCATTGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: RTVVSSNKLPAL*LVPGGWVGIVG Trigger: GCCCACAATGCCCACCCACCCTCCTGGCACCAGCCACAGTGCGGGCAGCTTGTTGGAAGAGACCACTGTGCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CCA 72 bp | AACAAGCTGCCCGCACTGTGGCTGGTGCCAGGAGGGTaGGTGGGCATTGTGGGCTTGAGTGGGCCATTGTCG | + |
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Preference number: 6 (lower is better) Translates to: NKLPALWLVPGG*VGIVGLSGPLS Trigger: CGACAATGGCCCACTCAAGCCCACAATGCCCACCCACCCTCCTGGCACCAGCCACAGTGCGGGCAGCTTGTT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CAA 72 bp | TGGCTGGTGCCAGGAGGGTGGGTGGGCATTGTGGGCTaGAGTGGGCCATTGTCGAAGACAGCATCGCTGAAT | + |
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Preference number: 6 (lower is better) Translates to: WLVPGGWVGIVG*SGPLSKTASLN Trigger: ATTCAGCGATGCTGTCTTCGACAATGGCCCACTCAAGCCCACAATGCCCACCCACCCTCCTGGCACCAGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | GTGCCCACAGAGAGTAAAGGAGGACAGAGGCTGCTTTaGTGGCCTTGTTGGGGGCATAGCCTTCCCCTATGC | + |
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Preference number: 6 (lower is better) Translates to: VPTESKGGQRLL*WPCWGHSLPLC Trigger: GCATAGGGGAAGGCTATGCCCCCAACAAGGCCAGCAAAGCAGCCTCTGTCCTCCTTTACTCTCTGTGGGCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | TGTATGTGCCCACAGAGAGTAAAGGAGGACAGAGGCTaGTTTGCTGGCCTTGTTGGGGGCATAGCCTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: CMCPQRVKEDRG*FAGLVGGIAFP Trigger: GGGGAAGGCTATGCCCCCAACAAGGCCAGCAAAGCAGCCTCTGTCCTCCTTTACTCTCTGTGGGCACATACA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CCA 72 bp | CTCTCCAAGGTCATTTCGATGTCTGCATTCCCCAGCTaGGCGTCAGCGAAGACACTCCTGTCCCCATGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LSKVISMSAFPS*ASAKTLLSPCA Trigger: TGCACATGGGGACAGGAGTGTCTTCGCTGACGCCCAGCTGGGGAATGCAGACATCGAAATGACCTTGGAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 72 bp | TCCAGCCTTAAGCATGTCATAGTCCCTAGTGACAGGTaGCTGCCGTCCAACAAAGTCATTCTCAACCACGTG | + |
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Preference number: 6 (lower is better) Translates to: SSLKHVIVPSDR*LPSNKVILNHV Trigger: CACGTGGTTGAGAATGACTTTGTTGGACGGCAGTCACCTGTCACTAGGGACTATGACATGCTTAAGGCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS GCA 72 bp | AGCTGCGGCAGAGATCTTGGATACTGGTACATGGTCTaGATCCAGCATATTCACAGCTCTCTCCAAGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SCGRDLGYWYMV*IQHIHSSLQGH Trigger: ATGACCTTGGAGAGAGCTGTGAATATGCTGGATGCAGACCATGTACCAGTATCCAAGATCTCTGCCGCAGCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CCA 72 bp | AAGGTAGCTGCGGCAGAGATCTTGGATACTGGTACATaGTCTGCATCCAGCATATTCACAGCTCTCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: KVAAAEILDTGT*SASSIFTALSK Trigger: CTTGGAGAGAGCTGTGAATATGCTGGATGCAGACCATGTACCAGTATCCAAGATCTCTGCCGCAGCTACCTT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CAA 72 bp | CAGCATCTTCCGTGTATGCTGAAGACCATTTTCCTTTaGGACAACCATTCGAGCCACCAATGTGGGTATCGG | + |
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Preference number: 6 (lower is better) Translates to: QHLPCMLKTIFL*DNHSSHQCGYR Trigger: CCGATACCCACATTGGTGGCTCGAATGGTTGTCCAAAAGGAAAATGGTCTTCAGCATACACGGAAGATGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS CCA 72 bp | TGTGGATTGCTCCTTTCCTCTGGCATCTGCAAGTCTTaGTATTGCTCTTTTAGTTTCCTACTTCGGCTGCCA | + |
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Preference number: 6 (lower is better) Translates to: CGLLLSSGICKS*YCSFSFLLRLP Trigger: TGGCAGCCGAAGTAGGAAACTAAAAGAGCAATACCAAGACTTGCAGATGCCAGAGGAAAGGAGCAATCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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| CDS TCA 72 bp | CGGGGCCAGCAGAGCTCATGTTCCTTAGGCATCCAGTaGCATTGTAGAATATATCAAAATCAAGCAAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: RGQQSSCSLGIQ*HCRIYQNQASH Trigger: ATGGCTTGCTTGATTTTGATATATTCTACAATGTCACTGGATGCCTAAGGAACATGAGCTCTGCTGGCCCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039408.3 |
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