Pregenerated sensors for PKM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032294Ensembl transcript IDs: ENSMUST00000034834.16, ENSMUST00000163694.4, ENSMUST00000213930.2, ENSMUST00000215623.2, ENSMUST00000215660.2, ENSMUST00000217038.2, ENSMUST00000217353.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAATACAAGGTGGAGAGTGGAGTGTCTGCAGTGACAGAAGTGGAGTaGACAAGAAGTGGGGAGGCCAAAGCTGTTGGGAAAGCAGGTCAG | + |
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Preference number: 1 (lower is better) Translates to: EYKVESGVSAVTEVE*TRSGEAKAVGKAGQ Trigger: CTGACCTGCTTTCCCAACAGCTTTGGCCTCCCCACTTCTTGTGCACTCCACTTCTGTCACTGCAGACACTCCACTCTCCACCTTGTATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| 3UTR GCA 90 bp | GGGCTGGGAATTCTGACAACTTTCTACAGAAGCAAAGCCCAGAGATaGTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCAT | + |
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Preference number: 1 (lower is better) Translates to: GLGILTTFYRSKAQR*CRPSVIKSGFPVLH Trigger: ATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAGAAAGTTGTCAGAATTCCCAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| 3UTR GCA 90 bp | CTGGGAATTCTGACAACTTTCTACAGAAGCAAAGCCCAGAGATGCTaGCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCC | + |
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Preference number: 1 (lower is better) Translates to: LGILTTFYRSKAQRC*RPSVIKSGFPVLHS Trigger: GGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAGAAAGTTGTCAGAATTCCCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| 3UTR-3UTR CCA 90 bp | CAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCCACTACAAGCGTTGCTaGCCTAATGGAAAGGATAGG | + |
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Preference number: 2 (lower is better) Translates to: QRCCRPSVIKSGFPVLHSHYKRC*PNGKDR Trigger: CCTATCCTTTCCATTAGGCCAGCAACGCTTGTAGTG...GGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| 3UTR-3UTR CCA 90 bp | CTACAGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTCACTACAAGCGTTGCTaGCCTAATGGAAAGGATAGG | + |
|
Preference number: 2 (lower is better) Translates to: LQKQSPEMLPPFCDKVRVHYKRC*PNGKDR Trigger: CCTATCCTTTCCATTAGGCCAGCAACGCTTGTAGTG...AACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| 3UTR-3UTR CCA 90 bp | CTACAGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTGCCCTGAATAATAGCTaGTCTCTATTGCATGTTTTA | + |
|
Preference number: 2 (lower is better) Translates to: LQKQSPEMLPPFCDKVRVALNNS*SLLHVL Trigger: TAAAACATGCAATAGAGACCAGCTATTATTCAGGGC...AACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| 3UTR CCA 72 bp | CAGGTCAGGGCCAGGGCCAGAAGTCGTCATCTACACTaGGACCCTGGGCCCCACACCCTCAGCCCCTACTCT | + |
|
Preference number: 3 (lower is better) Translates to: QVRARARSRHLH*DPGPHTLSPYS Trigger: AGAGTAGGGGCTGAGGGTGTGGGGCCCAGGGTCCCAGTGTAGATGACGACTTCTGGCCCTGGCCCTGACCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| 3UTR TCA 72 bp | CTGCAGAATACAAGGTGGAGAGTGGAGTGTCTGCAGTaGCAGAAGTGGAGTGCACAAGAAGTGGGGAGGCCA | + |
|
Preference number: 3 (lower is better) Translates to: LQNTRWRVECLQ*QKWSAQEVGRP Trigger: TGGCCTCCCCACTTCTTGTGCACTCCACTTCTGTCACTGCAGACACTCCACTCTCCACCTTGTATTCTGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| 3UTR-3UTR CAA 90 bp | CTACAGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTAATAGCTGGTCTCTATaGCATGTTTTAGAGGCATTA | + |
|
Preference number: 3 (lower is better) Translates to: LQKQSPEMLPPFCDKVRVNSWSL*HVLEAL Trigger: TAATGCCTCTAAAACATGCAATAGAGACCAGCTATT...AACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | GCAGGTCAGGGCCAGGGCCAGAAGTCGTCATCTACACTGGGACCCTGGGCCCCAAAGCGTTGTCCAGGGTaGTCTTCAGAGTGGCTCCCT | + |
|
Preference number: 4 (lower is better) Translates to: AGQGQGQKSSSTLGPWAPKRCPG*SSEWLP Trigger: AGGGAGCCACTCTGAAGATCACCCTGGACAACGCTT...TGGGGCCCAGGGTCCCAGTGTAGATGACGACTTCTGGCCCTGGCCCTGACCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| CDS-3UTR TCA 90 bp | AAGCAGGTCAGGGCCAGGGCCAGAAGTCGTCATCTACACTGGGACCCTGGGCCCTACTCATGGGTTCCATaGGAGAAATTCAGCCGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: KQVRARARSRHLHWDPGPYSWVP*EKFSRA Trigger: GGCTCGGCTGAATTTCTCTCATGGAACCCATGAGTA...GGGCCCAGGGTCCCAGTGTAGATGACGACTTCTGGCCCTGGCCCTGACCTGCTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| CDS-3UTR CCA 90 bp | TGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCTCCTCCACCGCAGACGGTGGAACATaGCTGCCTCAGCCTCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: CRPSVIKSGFPVLHSSSTADGGT*LPQPPE Trigger: CTCGGGAGGCTGAGGCAGCCATGTTCCACCGTCTGC...GGTGGAGGAGGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | CCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCTCCTCCACCCCGCCCAATGGTACAAATaGTGCCAGTGTTGCGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: PPFCDKVRVSSPAFLLHPAQWYK*CQCCGP Trigger: CGGCCCGCAACACTGGCATCATTTGTACCATTGGGC...GGGGTGGAGGAGGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | TCCTCCTCCACCCCTGGCTCAGGTAGGGCCCTGAATAATAGCTGGTCTCTATTGCTCCCAGCACCTTCCTaGCTTCATGCACGTCGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SSSTPGSGRALNNSWSLLLPAPS*LHARRL Trigger: CAGCCGACGTGCATGAAGTCAGGAAGGTGCTGGGAG...CAATAGAGACCAGCTATTATTCAGGGCCCTACCTGAGCCAGGGGTGGAGGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR GCA 90 bp | GCAGGTCAGGGCCAGGGCCAGAAGTCGTCATCTACACTGGGACCCTGGGCCCCAGAGAATGGGATCAGATaGAAAGCTTTCTGTGGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: AGQGQGQKSSSTLGPWAPENGIR*KAFCGF Trigger: GAAGCCACAGAAAGCTTTGCATCTGATCCCATTCTC...TGGGGCCCAGGGTCCCAGTGTAGATGACGACTTCTGGCCCTGGCCCTGACCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| CDS-3UTR TCA 90 bp | AGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCATGGCCATGGCCTCCATaGGGTCTGTGGAGTGACTGG | + |
|
Preference number: 4 (lower is better) Translates to: RSKAQRCCRPSVIKSGFPWPWPP*GLWSDW Trigger: CCAGTCACTCCACAGACCTCATGGAGGCCATGGCCA...TGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | AGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCATACCTGGCCACTTGGTaGGCACTCCTGCCAGACTCC | + |
|
Preference number: 4 (lower is better) Translates to: RSKAQRCCRPSVIKSGFPYLATW*ALLPDS Trigger: GGAGTCTGGCAGGAGTGCTCACCAAGTGGCCAGGTA...TGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR CCA 90 bp | CAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTAGCACGGGTGGGGCGTaGCTTCTTGATCATGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: QSPEMLPPFCDKVRVSSPSTGGA*LLDHAL Trigger: GAGAGCATGATCAAGAAGCCACGCCCCACCCGTGCT...AGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CCA 90 bp | CCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCAGCACGGGTGGGGCGTaGCTTCTTGATCATGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: PEMLPPFCDKVRVSSPAFSTGGA*LLDHAL Trigger: GAGAGCATGATCAAGAAGCCACGCCCCACCCGTGCT...GAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | AGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGCCCAATGGTACAAATaGTGCCAGTGTTGCGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: RSKAQRCCRPSVIKSGFPAQWYK*CQCCGP Trigger: CGGCCCGCAACACTGGCATCATTTGTACCATTGGGC...TGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | CCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCTCCTCCACCCCTACTCATGGGTTCCATaGGAGAAATTCAGCCGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PPFCDKVRVSSPAFLLHPYSWVP*EKFSRA Trigger: GGCTCGGCTGAATTTCTCTCATGGAACCCATGAGTA...GGGGTGGAGGAGGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | AGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCATACCTGGCCACTTGGTaGGCACTCCTGCCAGACTTG | + |
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Preference number: 4 (lower is better) Translates to: RSKAQRCCRPSVIKSGFPYLATW*ALLPDL Trigger: CAAGTCTGGCAGGAGTGCTCACCAAGTGGCCAGGTA...TGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034834.16 |
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| CDS-3UTR GCA 90 bp | TCCTCCTCCACCCCTGGCTCAGGTAGGGCCCTGAATAATAGCTGGTCTCTATTGCCTTTCTCCTTCACCTaGAGTGAGATGAGCCCATCG | + |
|
Preference number: 4 (lower is better) Translates to: SSSTPGSGRALNNSWSLLPFSFT*SEMSPS Trigger: CGATGGGCTCATCTCACTGCAGGTGAAGGAGAAAGG...CAATAGAGACCAGCTATTATTCAGGGCCCTACCTGAGCCAGGGGTGGAGGAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | TCTCCTGACTCCAGGCTAGGGCTGGGAATTCTGACAACTTTCTACAGAAGCAAACTCCCAGCACCTTCCTaGCTTCATGCACGTCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SPDSRLGLGILTTFYRSKLPAPS*LHARRL Trigger: CAGCCGACGTGCATGAAGTCAGGAAGGTGCTGGGAG...TTTGCTTCTGTAGAAAGTTGTCAGAATTCCCAGCCCTAGCCTGGAGTCAGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CCA 90 bp | CTACAGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCAAACAGCAGACGGTaGAACATGGCTGCCTCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LQKQSPEMLPPFCDKVRVSNSRR*NMAASA Trigger: GGCTGAGGCAGCCATGTTCCACCGTCTGCTGTTTGA...AACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | AGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCATCCTGCCAGACTCCGTaGGAACTATCAAAGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RSKAQRCCRPSVIKSGFPSCQTP*ELSKLL Trigger: CAGCAGCTTTGATAGTTCTCACGGAGTCTGGCAGGA...TGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR GCA 90 bp | AGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCACCTTTCTCCTTCACCTaGAGTGAGATGAGCCCATCG | + |
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Preference number: 4 (lower is better) Translates to: RSKAQRCCRPSVIKSGFPPFSFT*SEMSPS Trigger: CGATGGGCTCATCTCACTGCAGGTGAAGGAGAAAGG...TGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR GCA 90 bp | TCTCCTGACTCCAGGCTAGGGCTGGGAATTCTGACAACTTTCTACAGAAGCAAATCCCGAGCTATCAGGTaGTGCATGCGAACAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SPDSRLGLGILTTFYRSKSRAIR*CMRTAS Trigger: GGAGGCTGTTCGCATGCAGCACCTGATAGCTCGGGA...TTTGCTTCTGTAGAAAGTTGTCAGAATTCCCAGCCCTAGCCTGGAGTCAGGAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR GCA 90 bp | TCCTCCTCCACCCCTGGCTCAGGTAGGGCCCTGAATAATAGCTGGTCTCTATTGGAGAATGGGATCAGATaGAAAGCTTTCTGTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: SSSTPGSGRALNNSWSLLENGIR*KAFCGF Trigger: GAAGCCACAGAAAGCTTTGCATCTGATCCCATTCTC...CAATAGAGACCAGCTATTATTCAGGGCCCTACCTGAGCCAGGGGTGGAGGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR TCA 90 bp | GGTAGGGCCCTGAATAATAGCTGGTCTCTATTGCATGTTTTAGAGGCATTAATTATGAGGTCTGTGGAGTaGCTGGAGGCTCGCACAAGC | + |
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Preference number: 4 (lower is better) Translates to: GRALNNSWSLLHVLEALIMRSVE*LEARTS Trigger: GCTTGTGCGAGCCTCCAGTCACTCCACAGACCTCAT...AATTAATGCCTCTAAAACATGCAATAGAGACCAGCTATTATTCAGGGCCCTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR GCA 90 bp | GGTAGGGCCCTGAATAATAGCTGGTCTCTATTGCATGTTTTAGAGGCATTAATTACGGTGGAACATGGCTaGCTCAGCCTCCCGAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: GRALNNSWSLLHVLEALITVEHG*LSLPSY Trigger: ATAGCTCGGGAGGCTGAGGCAGCCATGTTCCACCGT...AATTAATGCCTCTAAAACATGCAATAGAGACCAGCTATTATTCAGGGCCCTACC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS-3UTR CCA 90 bp | GGTAGGGCCCTGAATAATAGCTGGTCTCTATTGCATGTTTTAGAGGCATTAATTGGTCTGTGGAGTGACTaGAGGCTCGCACAAGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GRALNNSWSLLHVLEALIGLWSD*RLAQAL Trigger: AAGAGCTTGTGCGAGCCTCCAGTCACTCCACAGACC...AATTAATGCCTCTAAAACATGCAATAGAGACCAGCTATTATTCAGGGCCCTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| 3UTR CAA 72 bp | GGCTCAGGTAGGGCCCTGAATAATAGCTGGTCTCTATaGCATGTTTTAGAGGCATTAATTTTCCCTGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: GSGRALNNSWSL*HVLEALIFPGV Trigger: GACACCAGGGAAAATTAATGCCTCTAAAACATGCAATAGAGACCAGCTATTATTCAGGGCCCTACCTGAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | CCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCGCGGTACCTGGCCACTaGGTGAGCACTCCTGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: PEMLPPFCDKVRVSSPAFAVPGH*VSTPAR Trigger: TCTGGCAGGAGTGCTCACCAAGTGGCCAGGTACCGC...GAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | CAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCGCGGTACCTGGCCACTaGGTGAGCACTCCTGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: QRCCRPSVIKSGFPVLHSAVPGH*VSTPAR Trigger: TCTGGCAGGAGTGCTCACCAAGTGGCCAGGTACCGC...GGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | TGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCTCCTCCACCAAGAAGCCTCGGGCCTaGCCAACATCCATGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: CRPSVIKSGFPVLHSSSTKKPRA*PTSMAK Trigger: CTTGGCCATGGATGTTGGCAAGGCCCGAGGCTTCTT...GGTGGAGGAGGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | CCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCAAGAAGCCTCGGGCCTaGCCAACATCCATGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: PEMLPPFCDKVRVSSPAFKKPRA*PTSMAK Trigger: CTTGGCCATGGATGTTGGCAAGGCCCGAGGCTTCTT...GAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | CAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTTCCAGTCCTGCATTCCGCTTCACGGACATTCTaGATGGTCTCTGCATGGTAC | + |
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Preference number: 5 (lower is better) Translates to: QRCCRPSVIKSGFPVLHSASRTF*MVSAWY Trigger: GTACCATGCAGAGACCATCAAGAATGTCCGTGAAGC...GGAATGCAGGACTGGAAACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | GGCTCAGGTAGGGCCCTGAATAATAGCTGGTCTCTATTGCATGTTTTAGAGGCAGTGGGGCGTGGCTTCTaGATCATGCTCTCCAGCATC | + |
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Preference number: 5 (lower is better) Translates to: GSGRALNNSWSLLHVLEAVGRGF*IMLSSI Trigger: GATGCTGGAGAGCATGATCAAGAAGCCACGCCCCAC...TGCCTCTAAAACATGCAATAGAGACCAGCTATTATTCAGGGCCCTACCTGAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | TCTCCTGACTCCAGGCTAGGGCTGGGAATTCTGACAACTTTCTACAGAAGCAAAGCTTCACGGACATTCTaGATGGTCTCTGCATGGTAC | + |
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Preference number: 5 (lower is better) Translates to: SPDSRLGLGILTTFYRSKASRTF*MVSAWY Trigger: GTACCATGCAGAGACCATCAAGAATGTCCGTGAAGC...TTTGCTTCTGTAGAAAGTTGTCAGAATTCCCAGCCCTAGCCTGGAGTCAGGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | TCCTCCTCCACCCCTGGCTCAGGTAGGGCCCTGAATAATAGCTGGTCTCTATTGATTTTGCTGATGATCTaGATGTTCTTGCCCTTCTCT | + |
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Preference number: 5 (lower is better) Translates to: SSSTPGSGRALNNSWSLLILLMI*MFLPFS Trigger: AGAGAAGGGCAAGAACATCAAGATCATCAGCAAAAT...CAATAGAGACCAGCTATTATTCAGGGCCCTACCTGAGCCAGGGGTGGAGGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS-3UTR CAA 90 bp | CTACAGAAGCAAAGCCCAGAGATGCTGCCGCCCTTCTGTGATAAAGTCAGGGTTATTTTGCTGATGATCTaGATGTTCTTGCCCTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: LQKQSPEMLPPFCDKVRVILLMI*MFLPFS Trigger: AGAGAAGGGCAAGAACATCAAGATCATCAGCAAAAT...AACCCTGACTTTATCACAGAAGGGCGGCAGCATCTCTGGGCTTTGCTTCTGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 |
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| CDS CCA 72 bp | CTGGAGGCTCGCACAAGCTCTTCAAACAGCAGACGGTaGAACATGGCTGCCTCAGCCTCCCGAGCTATCAGG | + |
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Preference number: 6 (lower is better) Translates to: LEARTSSSNSRR*NMAASASRAIR Trigger: CCTGATAGCTCGGGAGGCTGAGGCAGCCATGTTCCACCGTCTGCTGTTTGAAGAGCTTGTGCGAGCCTCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS CCA 72 bp | CTCGCACAAGCTCTTCAAACAGCAGACGGTGGAACATaGCTGCCTCAGCCTCCCGAGCTATCAGGTGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: LAQALQTADGGT*LPQPPELSGAA Trigger: TGCAGCACCTGATAGCTCGGGAGGCTGAGGCAGCCATGTTCCACCGTCTGCTGTTTGAAGAGCTTGTGCGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163694.4 |
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| CDS GCA 72 bp | AGCCACCGCAACAGGACGGTAGAGAATGGGATCAGATaGAAAGCTTTCTGTGGCTTCACGGACATTCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: SHRNRTVENGIR*KAFCGFTDILD Trigger: ATCAAGAATGTCCGTGAAGCCACAGAAAGCTTTGCATCTGATCCCATTCTCTACCGTCCTGTTGCGGTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENSMUST00000034834.16 ENSMUST00000163694.4 ENSMUST00000213930.2 ENSMUST00000215623.2 ENSMUST00000215660.2 ENSMUST00000217038.2 ENSMUST00000217353.2 |
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