Pregenerated sensors for PKIA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027499Ensembl transcript IDs: ENSMUST00000028999.12, ENSMUST00000192468.2, ENSMUST00000193330.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGTGCAGCGCAGCCATTTTCTTCCCCTCCGTTTCACCCGTGGCTaGGAATACATCCGAGCATCGCCAGGATATTTGCCACATTGTCAG | + |
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Preference number: 1 (lower is better) Translates to: AVQRSHFLPLRFTRG*EYIRASPGYLPHCQ Trigger: CTGACAATGTGGCAAATATCCTGGCGATGCTCGGATGTATTCGCAGCCACGGGTGAAACGGAGGGGAAGAAAATGGCTGCGCTGCACAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR TCA 90 bp | AAGTGGAAGGACCCATACACGAAGGAGATCCAAGCACAGCCCAGGTaGTTTCAACCATTGCTAATGACAGAGGTGGGGAAAAGGCTGTGT | + |
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Preference number: 1 (lower is better) Translates to: KWKDPYTKEIQAQPR*FQPLLMTEVGKRLC Trigger: ACACAGCCTTTTCCCCACCTCTGTCATTAGCAATGGTTGAAATCACCTGGGCTGTGCTTGGATCTCCTTCGTGTATGGGTCCTTCCACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR TCA 90 bp | CCACAGCACAAGGGCTTTACTTTTGAGATGGGTGCCCACAGGCTTTaGGGAAAACACTTCCTTCACAAGTTGTCCTCCTGCGTTAAACAG | + |
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Preference number: 1 (lower is better) Translates to: PQHKGFTFEMGAHRL*GKHFLHKLSSCVKQ Trigger: CTGTTTAACGCAGGAGGACAACTTGTGAAGGAAGTGTTTTCCTCAAAGCCTGTGGGCACCCATCTCAAAAGTAAAGCCCTTGTGCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR TCA 90 bp | GAGCATGCAACATTGCTAAATACAAAAGTCATAGAAGCTCACAGATaGCTTCCCAGGCTGCCACAAGTCAGTGAAAGAACATTTCCAGGC | + |
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Preference number: 1 (lower is better) Translates to: EHATLLNTKVIEAHR*LPRLPQVSERTFPG Trigger: GCCTGGAAATGTTCTTTCACTGACTTGTGGCAGCCTGGGAAGTCATCTGTGAGCTTCTATGACTTTTGTATTTAGCAATGTTGCATGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR TCA 90 bp | ATATTTAAAGACAAGCATGGCACCGCATGCATTAGTAATAGTATATaGCACAGGGGTATAACCCTTCCACACAGTCTTAGCACTGGTTCA | + |
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Preference number: 1 (lower is better) Translates to: IFKDKHGTACISNSI*HRGITLPHSLSTGS Trigger: TGAACCAGTGCTAAGACTGTGTGGAAGGGTTATACCCCTGTGTCATATACTATTACTAATGCATGCGGTGCCATGCTTGTCTTTAAATAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CCA 90 bp | AACCTTGGGCATCTAACTGGATCCTCATTTATTACCAAAGATAGTTaGTTTCATAATACTGACCAGAGAGGGTTATACAGGCCACAGAAA | + |
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Preference number: 1 (lower is better) Translates to: NLGHLTGSSFITKDS*FHNTDQRGLYRPQK Trigger: TTTCTGTGGCCTGTATAACCCTCTCTGGTCAGTATTATGAAACCAACTATCTTTGGTAATAAATGAGGATCCAGTTAGATGCCCAAGGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CCA 90 bp | GTCTGTGTAGATACTAAGACTGAACTCAGGCAATATTCACATTCATaGATATTTCCACATGCCTGTATAATAAAGCAAAGTGGGCTCAGT | + |
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Preference number: 1 (lower is better) Translates to: VCVDTKTELRQYSHS*IFPHACIIKQSGLS Trigger: ACTGAGCCCACTTTGCTTTATTATACAGGCATGTGGAAATATCCATGAATGTGAATATTGCCTGAGTTCAGTCTTAGTATCTACACAGAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR GCA 90 bp | AGATGGGTGCCCACAGGCTTTGAGGAAAACACTTCCTTCACAAGTTGTCCTCCTGGGGAAAAGGCTGTGTaGAGACACAGGCTCCATCCC | + |
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Preference number: 2 (lower is better) Translates to: RWVPTGFEENTSFTSCPPGEKAV*RHRLHP Trigger: GGGATGGAGCCTGTGTCTGCACACAGCCTTTTCCCC...AGGAGGACAACTTGTGAAGGAAGTGTTTTCCTCAAAGCCTGTGGGCACCCATCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 90 bp | GGGTATGAAAGGGCTGAGAGGGGCCACAGCACAAGGGCTTTACTTTaGAGATGGGTGCCCACAGGCTTTGAGGAAAACACTTCCTTCACA | + |
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Preference number: 2 (lower is better) Translates to: GYERAERGHSTRALL*RWVPTGFEENTSFT Trigger: TGTGAAGGAAGTGTTTTCCTCAAAGCCTGTGGGCACCCATCTCAAAAGTAAAGCCCTTGTGCTGTGGCCCCTCTCAGCCCTTTCATACCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR TCA 90 bp | AGATGGGTGCCCACAGGCTTTGAGGAAAACACTTCCTTCACAAGTTGTCCTCCTAATCCTCTGACATCATaGGGGGCCAGATGCCACAGG | + |
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Preference number: 2 (lower is better) Translates to: RWVPTGFEENTSFTSCPPNPLTS*GARCHR Trigger: CCTGTGGCATCTGGCCCCTCATGATGTCAGAGGATT...AGGAGGACAACTTGTGAAGGAAGTGTTTTCCTCAAAGCCTGTGGGCACCCATCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR CCA 90 bp | TTATTTGCCTCCTATGATGCACCAGGTGAACCTTGGGCATCTAACTGGATCCTCGCTTTACTTTTGAGATaGGTGCCCACAGGCTTTGAG | + |
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Preference number: 2 (lower is better) Translates to: LFASYDAPGEPWASNWILALLLR*VPTGFE Trigger: CTCAAAGCCTGTGGGCACCCATCTCAAAAGTAAAGC...GAGGATCCAGTTAGATGCCCAAGGTTCACCTGGTGCATCATAGGAGGCAAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR GCA 90 bp | CATAATACTGACCAGAGAGGGTTATACAGGCCACAGAAACTCCCCATACAAGAAGCAATCAAAGGGCAGTaGAGAGCAGGTGTACTGTAC | + |
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Preference number: 2 (lower is better) Translates to: HNTDQRGLYRPQKLPIQEAIKGQ*RAGVLY Trigger: GTACAGTACACCTGCTCTGCACTGCCCTTTGATTGC...TTCTTGTATGGGGAGTTTCTGTGGCCTGTATAACCCTCTCTGGTCAGTATTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR GCA 90 bp | CATAATACTGACCAGAGAGGGTTATACAGGCCACAGAAACTCCCCATACAAGAACACAAGTTGTCCTCCTaGGTTAAACAGTGGCACCCA | + |
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Preference number: 2 (lower is better) Translates to: HNTDQRGLYRPQKLPIQEHKLSS*VKQWHP Trigger: TGGGTGCCACTGTTTAACGCAGGAGGACAACTTGTG...TTCTTGTATGGGGAGTTTCTGTGGCCTGTATAACCCTCTCTGGTCAGTATTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR TCA 90 bp | CACCAGGTGAACCTTGGGCATCTAACTGGATCCTCATTTATTACCAAAGATAGTTCCAGCCAGAGATACTaGAACTCTGGGGTTCAACCA | + |
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Preference number: 2 (lower is better) Translates to: HQVNLGHLTGSSFITKDSSSQRY*NSGVQP Trigger: TGGTTGAACCCCAGAGTTTCAGTATCTCTGGCTGGA...ACTATCTTTGGTAATAAATGAGGATCCAGTTAGATGCCCAAGGTTCACCTGGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR CCA 90 bp | ACACCCCTTTCCTTGGGCTGCCCACACTTCCATCTGCATTTACAGATTCATTCCGAGATACTGAAACTCTaGGGTTCAACCAACTCTTTT | + |
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Preference number: 2 (lower is better) Translates to: TPLSLGCPHFHLHLQIHSEILKL*GSTNSF Trigger: AAAAGAGTTGGTTGAACCCCAGAGTTTCAGTATCTC...GGAATGAATCTGTAAATGCAGATGGAAGTGTGGGCAGCCCAAGGAAAGGGGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 90 bp | CACTTAGAGGCTCTTCTGTTGAGAAAGTCTTCTTTCATCTGTTATTaGCCTCCTATGATGCACCAGGTGAACCTTGGGCATCTAACTGGA | + |
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Preference number: 2 (lower is better) Translates to: HLEALLLRKSSFICY*PPMMHQVNLGHLTG Trigger: TCCAGTTAGATGCCCAAGGTTCACCTGGTGCATCATAGGAGGCAAATAACAGATGAAAGAAGACTTTCTCAACAGAAGAGCCTCTAAGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR GCA 90 bp | AAAAAGGTAGGCTCAACCACATGTGTCTTTGTCCCAAAGACATGTGTACAAACCAACAGTGTCTTGCTGTaGAGCGCAGCCATTTTCTTC | + |
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Preference number: 2 (lower is better) Translates to: KKVGSTTCVFVPKTCVQTNSVLL*SAAIFF Trigger: GAAGAAAATGGCTGCGCTGCACAGCAAGACACTGTT...GGTTTGTACACATGTCTTTGGGACAAAGACACATGTGGTTGAGCCTACCTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 90 bp | AACTGTAGCTATGCTAGTGCTCCAGGACACTTAGAGGCTCTTCTGTaGAGAAAGTCTTCTTTCATCTGTTATTTGCCTCCTATGATGCAC | + |
|
Preference number: 2 (lower is better) Translates to: NCSYASAPGHLEALL*RKSSFICYLPPMMH Trigger: GTGCATCATAGGAGGCAAATAACAGATGAAAGAAGACTTTCTCAACAGAAGAGCCTCTAAGTGTCCTGGAGCACTAGCATAGCTACAGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR TCA 90 bp | CTTACCAGCCACAGAATCCCTCTAGGATTGAATACAGGACACCAAGTAGCAGTACAGTTGGGGACTAAATaGGATTCATATATTCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: LTSHRIPLGLNTGHQVAVQLGTK*DSYIPS Trigger: ACTGGGAATATATGAATCTCATTTAGTCCCCAACTG...TACTGCTACTTGGTGTCCTGTATTCAATCCTAGAGGGATTCTGTGGCTGGTAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR GCA 90 bp | TTATTTGCCTCCTATGATGCACCAGGTGAACCTTGGGCATCTAACTGGATCCTCACATTTCTAGCTCTTTaGATTATCTGGCATTCTTTG | + |
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Preference number: 2 (lower is better) Translates to: LFASYDAPGEPWASNWILTFLAL*IIWHSL Trigger: CAAAGAATGCCAGATAATGCAAAGAGCTAGAAATGT...GAGGATCCAGTTAGATGCCCAAGGTTCACCTGGTGCATCATAGGAGGCAAATAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR-3UTR CCA 90 bp | GCAATATTCACATTCATGGATATTTCCACATGCCTGTATAATAAAGCAAAGTGGCATTATACGGTCAAGTaGAAGGACCCATACACGAAG | + |
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Preference number: 2 (lower is better) Translates to: AIFTFMDISTCLYNKAKWHYTVK*KDPYTK Trigger: CTTCGTGTATGGGTCCTTCCACTTGACCGTATAATG...CCACTTTGCTTTATTATACAGGCATGTGGAAATATCCATGAATGTGAATATTGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 90 bp | AATGTTTATCTCTTTTCCCTTACCAGCCACAGAATCCCTCTAGGATaGAATACAGGACACCAAGTAGCAGTAAGAAATCAAATGAAATCA | + |
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Preference number: 2 (lower is better) Translates to: NVYLFSLTSHRIPLG*NTGHQVAVRNQMKS Trigger: TGATTTCATTTGATTTCTTACTGCTACTTGGTGTCCTGTATTCAATCCTAGAGGGATTCTGTGGCTGGTAAGGGAAAAGAGATAAACATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR TCA 72 bp | AAGGCTGTGTGCAGACACAGGCTCCATCCCCACTTGTaGCATGGCAACCAACAGTGTCTTGCTGTGCAGCGC | + |
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Preference number: 3 (lower is better) Translates to: KAVCRHRLHPHL*HGNQQCLAVQR Trigger: GCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGCCTGTGTCTGCACACAGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR CCA 72 bp | TGTGTGCAGACACAGGCTCCATCCCCACTTGTGACATaGCAACCAACAGTGTCTTGCTGTGCAGCGCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: CVQTQAPSPLVT*QPTVSCCAAQP Trigger: TGGCTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGCCTGTGTCTGCACACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR GCA 72 bp | CCCACTTGTGACATGGCAACCAACAGTGTCTTGCTGTaGAGCGCAGCCATTTTCTTCCCCTCCGTTTCACCC | + |
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Preference number: 3 (lower is better) Translates to: PTCDMATNSVLL*SAAIFFPSVSP Trigger: GGGTGAAACGGAGGGGAAGAAAATGGCTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR-3UTR CAA 90 bp | GCTCCATCCCCACTTGTGACATGGCAACCAACAGTGTCTTGCTGTGCAGCGCAGCCACATTGTCAGATGTaGATGACCGTCAGAATGGAG | + |
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Preference number: 3 (lower is better) Translates to: APSPLVTWQPTVSCCAAQPHCQM*MTVRME Trigger: CTCCATTCTGACGGTCATCAACATCTGACAATGTGG...CTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR TCA 72 bp | TCAGGTCGAGTTCCTACCGTACCCAGGTCTGCCTGTTaGAACACCTCTACCTACTTAACCTGGAACTGTAGC | + |
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Preference number: 3 (lower is better) Translates to: SGRVPTVPRSAC*NTSTYLTWNCS Trigger: GCTACAGTTCCAGGTTAAGTAGGTAGAGGTGTTTCAACAGGCAGACCTGGGTACGGTAGGAACTCGACCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR TCA 72 bp | AAGGGCTTTACTTTTGAGATGGGTGCCCACAGGCTTTaGGGAAAACACTTCCTTCACAAGTTGTCCTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: KGFTFEMGAHRL*GKHFLHKLSSC Trigger: GCAGGAGGACAACTTGTGAAGGAAGTGTTTTCCTCAAAGCCTGTGGGCACCCATCTCAAAAGTAAAGCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR GCA 72 bp | AGGGGCCAGATGCCACAGGAATCATCAGCTAGGCAGTaGTACTCTCTACAAGCATTTCATTATACGGTCAAG | + |
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Preference number: 3 (lower is better) Translates to: RGQMPQESSARQ*YSLQAFHYTVK Trigger: CTTGACCGTATAATGAAATGCTTGTAGAGAGTAGCACTGCCTAGCTGATGATTCCTGTGGCATCTGGCCCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR TCA 72 bp | GACAAGCATGGCACCGCATGCATTAGTAATAGTATATaGCACAGGGGTATAACCCTTCCACACAGTCTTAGC | + |
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Preference number: 3 (lower is better) Translates to: DKHGTACISNSI*HRGITLPHSLS Trigger: GCTAAGACTGTGTGGAAGGGTTATACCCCTGTGTCATATACTATTACTAATGCATGCGGTGCCATGCTTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CCA 72 bp | TGCTACTCTCTACAAGCATTTCATTATACGGTCAAGTaGAAGGACCCATACACGAAGGAGATCCAAGCACAG | + |
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Preference number: 3 (lower is better) Translates to: CYSLQAFHYTVK*KDPYTKEIQAQ Trigger: CTGTGCTTGGATCTCCTTCGTGTATGGGTCCTTCCACTTGACCGTATAATGAAATGCTTGTAGAGAGTAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| 3UTR TCA 72 bp | ACATTGCTAAATACAAAAGTCATAGAAGCTCACAGATaGCTTCCCAGGCTGCCACAAGTCAGTGAAAGAACA | + |
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Preference number: 3 (lower is better) Translates to: TLLNTKVIEAHR*LPRLPQVSERT Trigger: TGTTCTTTCACTGACTTGTGGCAGCCTGGGAAGTCATCTGTGAGCTTCTATGACTTTTGTATTTAGCAATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CCA 72 bp | ATTCATATATTCCCAGTCAGTAATGAAAGCACTCTATaGGAAGATATAGGCAGACTTCCTTGTCTACCTTGT | + |
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Preference number: 3 (lower is better) Translates to: IHIFPVSNESTL*EDIGRLPCLPC Trigger: ACAAGGTAGACAAGGAAGTCTGCCTATATCTTCCCATAGAGTGCTTTCATTACTGACTGGGAATATATGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CCA 72 bp | CATCTAACTGGATCCTCATTTATTACCAAAGATAGTTaGTTTCATAATACTGACCAGAGAGGGTTATACAGG | + |
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Preference number: 3 (lower is better) Translates to: HLTGSSFITKDS*FHNTDQRGLYR Trigger: CCTGTATAACCCTCTCTGGTCAGTATTATGAAACCAACTATCTTTGGTAATAAATGAGGATCCAGTTAGATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CCA 72 bp | GGTTCAACACTTTACAAAATGCATGTGAAACCAGTGTaGAATTACACAACTTTAAGAATGATCTTCCTATTC | + |
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Preference number: 3 (lower is better) Translates to: GSTLYKMHVKPV*NYTTLRMIFLF Trigger: GAATAGGAAGATCATTCTTAAAGTTGTGTAATTCCACACTGGTTTCACATGCATTTTGTAAAGTGTTGAACC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 72 bp | AGGGCTGAGAGGGGCCACAGCACAAGGGCTTTACTTTaGAGATGGGTGCCCACAGGCTTTGAGGAAAACACT | + |
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Preference number: 4 (lower is better) Translates to: RAERGHSTRALL*RWVPTGFEENT Trigger: AGTGTTTTCCTCAAAGCCTGTGGGCACCCATCTCAAAAGTAAAGCCCTTGTGCTGTGGCCCCTCTCAGCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| CDS-3UTR GCA 90 bp | CAGTGTCTTGCTGTGCAGCGCAGCCATTTTCTTCCCCTCCGTTTCACCCGTGGCCTAATTCATTGCTGTTaGCACTTGCAGAGGAAACCA | + |
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Preference number: 4 (lower is better) Translates to: QCLAVQRSHFLPLRFTRGLIHCC*HLQRKP Trigger: TGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAG...GCCACGGGTGAAACGGAGGGGAAGAAAATGGCTGCGCTGCACAGCAAGACACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CCA 90 bp | AGGCTGTGTGCAGACACAGGCTCCATCCCCACTTGTGACATGGCAACCAACAGTCTCCACTTTGTTCGGTaGAGCTTCTCTGTCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: RLCADTGSIPTCDMATNSLHFVR*SFSVHH Trigger: ATGATGGACAGAGAAGCTCCACCGAACAAAGTGGAG...ACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGCCTGTGTCTGCACACAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CCA 90 bp | GGCAACCAACAGTGTCTTGCTGTGCAGCGCAGCCATTTTCTTCCCCTCCGTTTCCTCCACTTTGTTCGGTaGAGCTTCTCTGTCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: GNQQCLAVQRSHFLPLRFLHFVR*SFSVHH Trigger: ATGATGGACAGAGAAGCTCCACCGAACAAAGTGGAG...GAAACGGAGGGGAAGAAAATGGCTGCGCTGCACAGCAAGACACTGTTGGTTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR GCA 90 bp | ACTTGTGACATGGCAACCAACAGTGTCTTGCTGTGCAGCGCAGCCATTTTCTTCATTGCTGTTGCCACTTaGAGAGGAAACCAGGATATC | + |
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Preference number: 4 (lower is better) Translates to: TCDMATNSVLLCSAAIFFIAVAT*RGNQDI Trigger: GATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAAT...GAAGAAAATGGCTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR GCA 90 bp | ATCCGAGCATCGCCAGGATATTTGCCACATTGTCAGATGTTGATGACCGTCAGAATTGCTGTTGCCACTTaGAGAGGAAACCAGGATATC | + |
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Preference number: 4 (lower is better) Translates to: IRASPGYLPHCQMLMTVRIAVAT*RGNQDI Trigger: GATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAAT...TCTGACGGTCATCAACATCTGACAATGTGGCAAATATCCTGGCGATGCTCGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR GCA 90 bp | TTATTTGCCTCCTATGATGCACCAGGTGAACCTTGGGCATCTAACTGGATCCTCTTAAGGCTAATTCATTaGTGTTGCCACTTGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LFASYDAPGEPWASNWILLRLIH*CCHLQR Trigger: CCTCTGCAAGTGGCAACAGCAATGAATTAGCCTTAA...GAGGATCCAGTTAGATGCCCAAGGTTCACCTGGTGCATCATAGGAGGCAAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 72 bp | TCTATGGGAAGATATAGGCAGACTTCCTTGTCTACCTaGTCTGTAACTACAGACTCAGGTCGAGTTCCTACC | + |
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Preference number: 4 (lower is better) Translates to: SMGRYRQTSLST*SVTTDSGRVPT Trigger: GGTAGGAACTCGACCTGAGTCTGTAGTTACAGACAAGGTAGACAAGGAAGTCTGCCTATATCTTCCCATAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 72 bp | AGTGGATGTAACCCTCGGCAGTTATCAAGAGGAAAGTaGTGTTTTACAAAAGAAGGTTCTGCCCTGTTCACG | + |
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Preference number: 4 (lower is better) Translates to: SGCNPRQLSRGK*CFTKEGSALFT Trigger: CGTGAACAGGGCAGAACCTTCTTTTGTAAAACACAACTTTCCTCTTGATAACTGCCGAGGGTTACATCCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 72 bp | CTCTTTTCCCTTACCAGCCACAGAATCCCTCTAGGATaGAATACAGGACACCAAGTAGCAGTAAGAAATCAA | + |
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Preference number: 4 (lower is better) Translates to: LFSLTSHRIPLG*NTGHQVAVRNQ Trigger: TTGATTTCTTACTGCTACTTGGTGTCCTGTATTCAATCCTAGAGGGATTCTGTGGCTGGTAAGGGAAAAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| CDS-3UTR GCA 90 bp | CACCAGGTGAACCTTGGGCATCTAACTGGATCCTCATTTATTACCAAAGATAGTCTAATTCATTGCTGTTaGCACTTGCAGAGGAAACCA | + |
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Preference number: 4 (lower is better) Translates to: HQVNLGHLTGSSFITKDSLIHCC*HLQRKP Trigger: TGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAG...ACTATCTTTGGTAATAAATGAGGATCCAGTTAGATGCCCAAGGTTCACCTGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| 3UTR CAA 72 bp | CGGAGATTGTCTCAAATAGGCCATAGGTTCACAACTTaGAGTCTATCAATAGGTAGATTTGTTTCAATTTTA | + |
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Preference number: 4 (lower is better) Translates to: RRLSQIGHRFTT*SLSIGRFVSIL Trigger: TAAAATTGAAACAAATCTACCTATTGATAGACTCAAAGTTGTGAACCTATGGCCTATTTGAGACAATCTCCG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| CDS-3UTR CAA 90 bp | GCTCCATCCCCACTTGTGACATGGCAACCAACAGTGTCTTGCTGTGCAGCGCAGGCTAATTCATTGCTGTaGCCACTTGCAGAGGAAACC | + |
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Preference number: 5 (lower is better) Translates to: APSPLVTWQPTVSCCAAQANSLL*PLAEET Trigger: GGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGC...CTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | CAGGCTCCATCCCCACTTGTGACATGGCAACCAACAGTGTCTTGCTGTGCAGCGGCTAATTCATTGCTGTaGCCACTTGCAGAGGAAACC | + |
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Preference number: 5 (lower is better) Translates to: QAPSPLVTWQPTVSCCAAANSLL*PLAEET Trigger: GGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGC...CGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | CGGTCAAGTGGAAGGACCCATACACGAAGGAGATCCAAGCACAGCCCAGGTGATCATTGCTGTTGCCACTaGCAGAGGAAACCAGGATAT | + |
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Preference number: 5 (lower is better) Translates to: RSSGRTHTRRRSKHSPGDHCCCH*QRKPGY Trigger: ATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATG...ATCACCTGGGCTGTGCTTGGATCTCCTTCGTGTATGGGTCCTTCCACTTGACCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | GCTCCATCCCCACTTGTGACATGGCAACCAACAGTGTCTTGCTGTGCAGCGCAGTCTTCACCTTCTGTCTaGTTGATATCAAGGCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: APSPLVTWQPTVSCCAAQSSPSV*LISRPA Trigger: AGCAGGCCTTGATATCAACAAGACAGAAGGTGAAGA...CTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACAAGTGGGGATGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | CGGTCAAGTGGAAGGACCCATACACGAAGGAGATCCAAGCACAGCCCAGGTGATTCACCTTCTGTCTTGTaGATATCAAGGCCTGCTAGT | + |
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Preference number: 5 (lower is better) Translates to: RSSGRTHTRRRSKHSPGDSPSVL*ISRPAS Trigger: ACTAGCAGGCCTTGATATCAACAAGACAGAAGGTGA...ATCACCTGGGCTGTGCTTGGATCTCCTTCGTGTATGGGTCCTTCCACTTGACCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | TGTGACATGGCAACCAACAGTGTCTTGCTGTGCAGCGCAGCCATTTTCTTCCCCTCTTCACCTTCTGTCTaGTTGATATCAAGGCCTGCT | + |
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Preference number: 5 (lower is better) Translates to: CDMATNSVLLCSAAIFFPSSPSV*LISRPA Trigger: AGCAGGCCTTGATATCAACAAGACAGAAGGTGAAGA...GGGGAAGAAAATGGCTGCGCTGCACAGCAAGACACTGTTGGTTGCCATGTCACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | ATCCGAGCATCGCCAGGATATTTGCCACATTGTCAGATGTTGATGACCGTCAGACATTGCTGTTGCCACTaGCAGAGGAAACCAGGATAT | + |
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Preference number: 5 (lower is better) Translates to: IRASPGYLPHCQMLMTVRHCCCH*QRKPGY Trigger: ATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATG...TCTGACGGTCATCAACATCTGACAATGTGGCAAATATCCTGGCGATGCTCGGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS-3UTR CAA 90 bp | CTGTTATTTGCCTCCTATGATGCACCAGGTGAACCTTGGGCATCTAACTGGATCTCACCTTCTGTCTTGTaGATATCAAGGCCTGCTAGT | + |
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Preference number: 5 (lower is better) Translates to: LLFASYDAPGEPWASNWISPSVL*ISRPAS Trigger: ACTAGCAGGCCTTGATATCAACAAGACAGAAGGTGA...GATCCAGTTAGATGCCCAAGGTTCACCTGGTGCATCATAGGAGGCAAATAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| CDS-3UTR CAA 90 bp | CACCAGGTGAACCTTGGGCATCTAACTGGATCCTCATTTATTACCAAAGATAGTTTTAAGGCTAATTCATaGCTGTTGCCACTTGCAGAG | + |
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Preference number: 5 (lower is better) Translates to: HQVNLGHLTGSSFITKDSFKANS*LLPLAE Trigger: CTCTGCAAGTGGCAACAGCAATGAATTAGCCTTAAA...ACTATCTTTGGTAATAAATGAGGATCCAGTTAGATGCCCAAGGTTCACCTGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028999.12 |
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| CDS CAA 72 bp | TTCAGACTTGGCTGCTTCTCCCTGGGCTTCTCCACTTaGTTCGGTGGAGCTTCTCTGTCCATCATCTTCACC | + |
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Preference number: 6 (lower is better) Translates to: FRLGCFSLGFST*FGGASLSIIFT Trigger: GGTGAAGATGATGGACAGAGAAGCTCCACCGAACAAAGTGGAGAAGCCCAGGGAGAAGCAGCCAAGTCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028999.12 ENSMUST00000193330.2 |
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| CDS CAA 72 bp | CTGCTAGTTTTAAGGCTAATTCATTGCTGTTGCCACTaGCAGAGGAAACCAGGATATCATGTATTGCATTTC | + |
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Preference number: 6 (lower is better) Translates to: LLVLRLIHCCCH*QRKPGYHVLHF Trigger: GAAATGCAATACATGATATCCTGGTTTCCTCTGCAAGTGGCAACAGCAATGAATTAGCCTTAAAACTAGCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028999.12 ENSMUST00000192468.2 ENSMUST00000193330.2 |
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