RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PKD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032855

Ensembl transcript IDs: ENSMUST00000035565.5, ENSMUST00000226883.2, ENSMUST00000227058.2, ENSMUST00000227107.2, ENSMUST00000228550.2, ENSMUST00000228581.2, ENSMUST00000228745.2

Found 552 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCGAGCTAGAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTaGCGTAGCCGTGGAGGGCCCAGCTCAGGGCTAGACTGGTTCCCA +
Preference number: 1 (lower is better)
Translates to: SELEGSGQNASCSRT*RSRGGPSSGLDWFP
Trigger: TGGGAACCAGTCTAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227107.2
ENSMUST00000228581.2
3UTR GCA 90 bp GAACACATGTGCTCCGAGCTAGAAGGGTCTGGGCAGAATGCTTCCTaGAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGGGCTA +
Preference number: 1 (lower is better)
Translates to: EHMCSELEGSGQNAS*SRTCRSRGGPSSGL
Trigger: TAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCGGAGCACATGTGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227107.2
ENSMUST00000228581.2
3UTR GCA 90 bp CCTACGCAGGAAAAGCTCCACCATCTCATAGTCCTGGGGTTCCCATaGTGGGCGGTAGAGCTCGCCACGCAAGGCGTGGTACCGCCAACG +
Preference number: 1 (lower is better)
Translates to: PTQEKLHHLIVLGFP*WAVELATQGVVPPT
Trigger: CGTTGGCGGTACCACGCCTTGCGTGGCGAGCTCTACCGCCCAGCATGGGAACCCCAGGACTATGAGATGGTGGAGCTTTTCCTGCGTAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 90 bp ACGCAGGAAAAGCTCCACCATCTCATAGTCCTGGGGTTCCCATGCTaGGCGGTAGAGCTCGCCACGCAAGGCGTGGTACCGCCAACGCAG +
Preference number: 1 (lower is better)
Translates to: TQEKLHHLIVLGFPC*AVELATQGVVPPTQ
Trigger: CTGCGTTGGCGGTACCACGCCTTGCGTGGCGAGCTCTACCGCCCAGCATGGGAACCCCAGGACTATGAGATGGTGGAGCTTTTCCTGCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 90 bp GTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTaGCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCC +
Preference number: 1 (lower is better)
Translates to: VVLPLLRSETSRSAC*LAPDKGGKQGHGGP
Trigger: GGGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CCA 90 bp AGTCGCCGTAACGCAAATGGGCGGACACTGAAGGCAGCCAGTGCATaGCCGGCTACAGGGAACTCGAGGCGCAGTGTAACAGCAGCATGG +
Preference number: 1 (lower is better)
Translates to: SRRNANGRTLKAASA*PATGNSRRSVTAAW
Trigger: CCATGCTGCTGTTACACTGCGCCTCGAGTTCCCTGTAGCCGGCCATGCACTGGCTGCCTTCAGTGTCCGCCCATTTGCGTTACGGCGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 90 bp GCTGTCCAGCACCTGCCCGAGGCCAGACTCGGATCCAGTAATAGCTaGAGCTTCCCCTGTACCCCTGCCCTGGGTAACAATGGACCCATT +
Preference number: 1 (lower is better)
Translates to: AVQHLPEARLGSSNS*SFPCTPALGNNGPI
Trigger: AATGGGTCCATTGTTACCCAGGGCAGGGGTACAGGGGAAGCTGCAGCTATTACTGGATCCGAGTCTGGCCTCGGGCAGGTGCTGGACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 90 bp ACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATCTGCGTaGTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGC +
Preference number: 1 (lower is better)
Translates to: TVVLPLLRSETSRSA*CLAPDKGGKQGHGG
Trigger: GCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 90 bp TCTACAAACACTGCACGGCTCCTGCTGTCAAGCCAGTTGTGCAGCTaGAGGAAGCCCAGTCGTGCACGGCTCTCCTCCAGACTCAGTCCT +
Preference number: 1 (lower is better)
Translates to: STNTARLLLSSQLCS*RKPSRARLSSRLSP
Trigger: AGGACTGAGTCTGGAGGAGAGCCGTGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAGGAGCCGTGCAGTGTTTGTAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 90 bp GTGAGTTCTACAAACACTGCACGGCTCCTGCTGTCAAGCCAGTTGTaGAGCTGCAGGAAGCCCAGTCGTGCACGGCTCTCCTCCAGACTC +
Preference number: 1 (lower is better)
Translates to: VSSTNTARLLLSSQL*SCRKPSRARLSSRL
Trigger: GAGTCTGGAGGAGAGCCGTGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAGGAGCCGTGCAGTGTTTGTAGAACTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 90 bp ACCGTGCCCAGGTGTCAGGCCTTGCTGTGCACGCACACCCATCTTTaGGCCAGGTCTGCACCTCGGCCATGGAAAAGTATAGGGCAAACA +
Preference number: 1 (lower is better)
Translates to: TVPRCQALLCTHTHL*ARSAPRPWKSIGQT
Trigger: TGTTTGCCCTATACTTTTCCATGGCCGAGGTGCAGACCTGGCGCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACACCTGGGCACGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 90 bp AGCTCGGGCAAGGCCCGACACAATGTCTTGCCAAAAACAGACCACTaGCGCACAAACCGCAGCTGCTGGGCAGCCTTGACCAAAAGCAGG +
Preference number: 1 (lower is better)
Translates to: SSGKARHNVLPKTDH*RTNRSCWAALTKSR
Trigger: CCTGCTTTTGGTCAAGGCTGCCCAGCAGCTGCGGTTTGTGCGCCAGTGGTCTGTTTTTGGCAAGACATTGTGTCGGGCCTTGCCCGAGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 90 bp TGGTCCTGCACAAAATGGGTCCACTGGCGATCAGCAATGCCCAGCTaGGCCAGGCGTACAAGCCCTGTAGCTGCTGTCAGTATCACCAGT +
Preference number: 1 (lower is better)
Translates to: WSCTKWVHWRSAMPS*ARRTSPVAAVSITS
Trigger: ACTGGTGATACTGACAGCAGCTACAGGGCTTGTACGCCTGGCCCAGCTGGGCATTGCTGATCGCCAGTGGACCCATTTTGTGCAGGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 90 bp ACTTGGTCGAAGCTAGTGAAGTGGCGTGGATGGTCCTGCACAAAATaGGTCCACTGGCGATCAGCAATGCCCAGCTGGGCCAGGCGTACA +
Preference number: 1 (lower is better)
Translates to: TWSKLVKWRGWSCTK*VHWRSAMPSWARRT
Trigger: TGTACGCCTGGCCCAGCTGGGCATTGCTGATCGCCAGTGGACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 90 bp CACAGAGCCCAGCTGAGCCACTTGGTCGAAGCTAGTGAAGTGGCGTaGATGGTCCTGCACAAAATGGGTCCACTGGCGATCAGCAATGCC +
Preference number: 1 (lower is better)
Translates to: HRAQLSHLVEASEVA*MVLHKMGPLAISNA
Trigger: GGCATTGCTGATCGCCAGTGGACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGTGGCTCAGCTGGGCTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR TCA 90 bp TCTTGGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTaGAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGG +
Preference number: 1 (lower is better)
Translates to: SWHLSSHSSPALAQI*NQQICVLPGPRQGR
Trigger: CCTCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCCAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 90 bp AATAAATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTaGTGTGTCCTCCTGTGGGGAGGGGACCCTGGGTCCTGGCTGGCC +
Preference number: 1 (lower is better)
Translates to: NKLASWRLGTHLVQY*CVLLWGGDPGSWLA
Trigger: GGCCAGCCAGGACCCAGGGTCCCCTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAATTTATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 90 bp TGGTGGTGGGTGTCAAGGTGCCCTCAGTGGTTTCAGCTTGCAAGATaGGCATCATGCCCTCCAGCTTCTGCAGCATCTTCTTCAGGCAGG +
Preference number: 1 (lower is better)
Translates to: WWWVSRCPQWFQLAR*ASCPPASAASSSGR
Trigger: CCTGCCTGAAGAAGATGCTGCAGAAGCTGGAGGGCATGATGCGCATCTTGCAAGCTGAAACCACTGAGGGCACCTTGACACCCACCACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226883.2
3UTR CCA 90 bp TGGTTGAGTCGGTCAAACTGGACAAGCAGACTTTCAAACACAGCATaGAGGCGAGAGGGCTCTGGTTCCAGCTTCAGCGTCGAGCGGCTT +
Preference number: 1 (lower is better)
Translates to: WLSRSNWTSRLSNTA*RREGSGSSFSVERL
Trigger: AAGCCGCTCGACGCTGAAGCTGGAACCAGAGCCCTCTCGCCTCCATGCTGTGTTTGAAAGTCTGCTTGTCCAGTTTGACCGACTCAACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 90 bp AAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTaGCTGGCCCAACCTAGAGGGCAGCAGAAGGTAATACTGAGTGGT +
Preference number: 1 (lower is better)
Translates to: KAAIPVPKRTGMQPF*LAQPRGQQKVILSG
Trigger: ACCACTCAGTATTACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR TCA 90 bp TCTGGAGTTGTTGCTCCAGCTGGTAGACGTCCTCTGTGGCCTGGTTaGGTCGGTCAAACTGGACAAGCAGACTTTCAAACACAGCATGGA +
Preference number: 1 (lower is better)
Translates to: SGVVAPAGRRPLWPG*VGQTGQADFQTQHG
Trigger: TCCATGCTGTGTTTGAAAGTCTGCTTGTCCAGTTTGACCGACTCAACCAGGCCACAGAGGACGTCTACCAGCTGGAGCAACAACTCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 90 bp GACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTaGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAGATGAGCCCACA +
Preference number: 1 (lower is better)
Translates to: DSSQTASLFDFVLSV*GWGRIQARAADEPT
Trigger: TGTGGGCTCATCTGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR TCA 90 bp AAAGCATGTACACCAAGAGTCTCTTCAACATGTCATGGAGCCTCTTaGCCTTTCGAGCTTCCTCCTTTGCCAAGAAGAGTGCAAAACCAT +
Preference number: 1 (lower is better)
Translates to: KACTPRVSSTCHGAS*PFELPPLPRRVQNH
Trigger: ATGGTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGAAAGGTCAAGAGGCTCCATGACATGTTGAAGAGACTCTTGGTGTACATGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp GCCCCGCTGCGTCTTGCGGCCCGAGCTCAGGACCGCGCCCACGCTCTGCGGCCGTATCTACCTCAGCCCTaGTCCCGCCGGACCCAGTCA +
Preference number: 2 (lower is better)
Translates to: APLRLAARAQDRAHALRPYLPQP*SRRTQS
Trigger: TGACTGGGTCCGGCGGGAGCAGGGCTGAGGTAGATA...CGGCCGCAGAGCGTGGGCGCGGTCCTGAGCTCGGGCCGCAAGACGCAGCGGGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228550.2
3UTR CAA 90 bp CTGCTGTCAGTATCACCAGTAGGCACCGTGCCCAGGTGTCAGGCCTaGCTGTGCACGCACACCCATCTTTGCGCCAGGTCTGCACCTCGG +
Preference number: 2 (lower is better)
Translates to: LLSVSPVGTVPRCQA*LCTHTHLCARSAPR
Trigger: CCGAGGTGCAGACCTGGCGCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACACCTGGGCACGGTGCCTACTGGTGATACTGACAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp GAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGTCTGAGAGGCCAGTGTaGAGCTCAGGCATTCCCAGG +
Preference number: 2 (lower is better)
Translates to: EGSGQNASCSRTCRSRGGSERPV*SSGIPR
Trigger: CCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGA...CCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp GGTGGGAGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTTGTCCACCCTGGCTCTaGGAGGCCAGTGTGAAGCTC +
Preference number: 2 (lower is better)
Translates to: GGSTTGDDLEPLDEREGSCPPWL*EASVKL
Trigger: GAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACA...ACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp ACACTGCACAGTAGCCCCAGTACCAGGCGCCCAGCAGGTCCGGTGCAGAGTAGGTATCCAGCTCCTGCTTaGTGGCGCTCTGCAGGCGAT +
Preference number: 2 (lower is better)
Translates to: TLHSSPSTRRPAGPVQSRYPAPA*WRSAGD
Trigger: ATCGCCTGCAGAGCGCCATCAAGCAGGAGCTGGATA...CCTACTCTGCACCGGACCTGCTGGGCGCCTGGTACTGGGGCTACTGTGCAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp GGTGGGAGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGCCACAGAGCCCAGCTaGGCCACTTGGTCGAAGCTA +
Preference number: 2 (lower is better)
Translates to: GGSTTGDDLEPLDEREGSATEPS*ATWSKL
Trigger: TAGCTTCGACCAAGTGGCTCAGCTGGGCTCTGTGGC...ACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGCTGAAGGGCACAGAGTaGGGACCCTCGCCCCAGGGC +
Preference number: 2 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGELKGTE*GPSPQG
Trigger: GCCCTGGGGCGAGGGTCCCCACTCTGTGCCCTTCAG...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp CCCAAGGTGGCTCCCATGAGCTCGGGCAAGGCCCGACACAATGTCTaGCCAAAAACAGACCACTGGCGCACAAACCGCAGCTGCTGGGCA +
Preference number: 2 (lower is better)
Translates to: PKVAPMSSGKARHNV*PKTDHWRTNRSCWA
Trigger: TGCCCAGCAGCTGCGGTTTGTGCGCCAGTGGTCTGTTTTTGGCAAGACATTGTGTCGGGCCTTGCCCGAGCTCATGGGAGCCACCTTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp CGGGTGAGTTCTACAAACACTGCACGGCTCCTGCTGTCAAGCCAGTaGTGCAGCTGCAGGAAGCCCAGTCGTGCACGGCTCTCCTCCAGA +
Preference number: 2 (lower is better)
Translates to: RVSSTNTARLLLSSQ*CSCRKPSRARLSSR
Trigger: TCTGGAGGAGAGCCGTGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAGGAGCCGTGCAGTGTTTGTAGAACTCACCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp CACCGTGCCCAGGTGTCAGGCCTTGCTGTGCACGCACACCCATCTTaGCGCCAGGTCTGCACCTCGGCCATGGAAAAGTATAGGGCAAAC +
Preference number: 2 (lower is better)
Translates to: HRAQVSGLAVHAHPS*RQVCTSAMEKYRAN
Trigger: GTTTGCCCTATACTTTTCCATGGCCGAGGTGCAGACCTGGCGCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACACCTGGGCACGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp GCAGCCAGGGGAGGGAGAGGAAGGAGGTCCATTGTGCCCATGGCCTaGAAGGCTCTGGAGTTGTTGCTCCAGCTGGTAGACGTCCTCTGT +
Preference number: 2 (lower is better)
Translates to: AARGGRGRRSIVPMA*KALELLLQLVDVLC
Trigger: ACAGAGGACGTCTACCAGCTGGAGCAACAACTCCAGAGCCTTCAAGGCCATGGGCACAATGGACCTCCTTCCTCTCCCTCCCCTGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATGTCCACCCTGGCTCTaGGAGGCCAGTGTGAAGCTC +
Preference number: 2 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVCPPWL*EASVKL
Trigger: GAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp GAGCTCGGGCAAGGCCCGACACAATGTCTTGCCAAAAACAGACCACTGGCGCACGCAAGCACACCGAGGTaGGCAGTGGTAGAGACAGGC +
Preference number: 2 (lower is better)
Translates to: ELGQGPTQCLAKNRPLAHASTPR*AVVETG
Trigger: GCCTGTCTCTACCACTGCTCACCTCGGTGTGCTTGC...GTGCGCCAGTGGTCTGTTTTTGGCAAGACATTGTGTCGGGCCTTGCCCGAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp GGTGGGAGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGCTGCTGGGCAGCCTTaGCCAAAAGCAGGAAGAGTA +
Preference number: 2 (lower is better)
Translates to: GGSTTGDDLEPLDEREGSAAGQP*PKAGRV
Trigger: TACTCTTCCTGCTTTTGGTCAAGGCTGCCCAGCAGC...ACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp CATCCATGGCCAGAACTCATCAGACCGGGTGATGGCCAGAAAGGCTaGGCTATCCAGCTCCTGCTTGATGGCGCTCTGCAGGCGATAGGC +
Preference number: 2 (lower is better)
Translates to: HPWPELIRPGDGQKG*AIQLLLDGALQAIG
Trigger: GCCTATCGCCTGCAGAGCGCCATCAAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCATCACCCGGTCTGATGAGTTCTGGCCATGGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp GGAAGGAGGTCCATTGTGCCCATGGCCTTGAAGGCTCTGGAGTTGTaGCTCCAGCTGGTAGACGTCCTCTGTGGCCTGGTTGAGTCGGTC +
Preference number: 2 (lower is better)
Translates to: GRRSIVPMALKALEL*LQLVDVLCGLVESV
Trigger: GACCGACTCAACCAGGCCACAGAGGACGTCTACCAGCTGGAGCAACAACTCCAGAGCCTTCAAGGCCATGGGCACAATGGACCTCCTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCGTGGGGAGGGGACCCTaGGTCCTGGCTGGCCACACA +
Preference number: 2 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCVGRGP*VLAGHT
Trigger: TGTGTGGCCAGCCAGGACCCAGGGTCCCCTCCCCAC...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CAA 90 bp GAAGCTTCTGAGCCTGAGCTAGGTGGGAGCACAACTGGGGATGACTaGGAGCCCCTGGATGAGCGGGAAGGCAGTGGATCCATTCCTTCA +
Preference number: 2 (lower is better)
Translates to: EASEPELGGSTTGDD*EPLDEREGSGSIPS
Trigger: TGAAGGAATGGATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACCTAGCTCAGGCTCAGAAGCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGATCTGAGAGGCCAGTGTaGAGCTCAGGCATTCCCAGG +
Preference number: 2 (lower is better)
Translates to: LLRSETSRSACCLAPDKGSERPV*SSGIPR
Trigger: CCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGA...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCAGGCATGCAGCCGTTCTaGCTGGCCCAACCTAGAGGG +
Preference number: 2 (lower is better)
Translates to: QMSPQKQAGAITYILFPPGMQPF*LAQPRG
Trigger: CCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCC...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATGCTGTGTCCTCCTGTaGGGAGGGGACCCTGGGTCC +
Preference number: 2 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRCCVLL*GGDPGS
Trigger: GGACCCAGGGTCCCCTCCCCACAGGAGGACACAGCA...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGCTGGGTACTCACTTaGTCCAATACTGCTGTGTCC +
Preference number: 2 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKGWVLT*SNTAVS
Trigger: GGACACAGCAGTATTGGACCAAGTGAGTACCCAGCC...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp TGCACAAAATGGGTCCACTGGCGATCAGCAATGCCCAGCTGGGCCAGGCGTACACCCACTGTCATACACTaGACAGTAGCCCCAGTACCA +
Preference number: 2 (lower is better)
Translates to: CTKWVHWRSAMPSWARRTPTVIH*TVAPVP
Trigger: TGGTACTGGGGCTACTGTGCAGTGTATGACAGTGGG...TGTACGCCTGGCCCAGCTGGGCATTGCTGATCGCCAGTGGACCCATTTTGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GGTGGGAGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTTTTGTCTTGTCTGTTTaGGGTTGGGGCAGAATCCAG +
Preference number: 2 (lower is better)
Translates to: GGSTTGDDLEPLDEREGSFVLSV*GWGRIQ
Trigger: CTGGATTCTGCCCCAACCCCAAACAGACAAGACAAA...ACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp AGCAATGGTGGTGGGTGTCAAGGTGCCCTCAGTGGTTTCAGCTTGCAAGATGCGGCTGCTGCTCAACGTTaGGCTCTGACACATCTGGGG +
Preference number: 2 (lower is better)
Translates to: SNGGGCQGALSGFSLQDAAAAQR*ALTHLG
Trigger: CCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGC...CGCATCTTGCAAGCTGAAACCACTGAGGGCACCTTGACACCCACCACCATTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226883.2
3UTR-3UTR CCA 90 bp GAGCTCGGGCAAGGCCCGACACAATGTCTTGCCAAAAACAGACCACTGGCGCACATGGCCAGAAAGGCTTaGCTATCCAGCTCCTGCTTG +
Preference number: 2 (lower is better)
Translates to: ELGQGPTQCLAKNRPLAHMARKA*LSSSCL
Trigger: CAAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCAT...GTGCGCCAGTGGTCTGTTTTTGGCAAGACATTGTGTCGGGCCTTGCCCGAGCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GCCCATCCAGAGCCGAAGCCTACGCAGGAAAAGCTCCACCATCTCATAGTCCTGACAAACCGCAGCTGCTaGGCAGCCTTGACCAAAAGC +
Preference number: 2 (lower is better)
Translates to: AHPEPKPTQEKLHHLIVLTNRSC*AALTKS
Trigger: GCTTTTGGTCAAGGCTGCCCAGCAGCTGCGGTTTGT...CAGGACTATGAGATGGTGGAGCTTTTCCTGCGTAGGCTTCGGCTCTGGATGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATGGCTATCCAGCTCCTaGTTGATGGCGCTCTGCAGG +
Preference number: 2 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSWLSSS*LMALCR
Trigger: CCTGCAGAGCGCCATCAAGCAGGAGCTGGATAGCCA...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp AGCAATGGTGGTGGGTGTCAAGGTGCCCTCAGTGGTTTCAGCTTGCAAGATGCGATGCCCTCCAGCTTCTaGAGCATCTTCTTCAGGCAG +
Preference number: 2 (lower is better)
Translates to: SNGGGCQGALSGFSLQDAMPSSF*SIFFRQ
Trigger: CTGCCTGAAGAAGATGCTGCAGAAGCTGGAGGGCAT...CGCATCTTGCAAGCTGAAACCACTGAGGGCACCTTGACACCCACCACCATTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226883.2
3UTR-3UTR GCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAAGCCAGTTGTGCAGCTaGAGGAAGCCCAGTCGTGCA +
Preference number: 2 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRSQLCS*RKPSRA
Trigger: TGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCT...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp TCCATTCCTTCAAAGCGGACTTTGTGGCGGAACTCCTTGACCTTGCTGAAGCCCTGTCAGGCCTTGCTGTaGACGCACACCCATCTTTGC +
Preference number: 2 (lower is better)
Translates to: SIPSKRTLWRNSLTLLKPCQALL*THTHLC
Trigger: GCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACA...GGGCTTCAGCAAGGTCAAGGAGTTCCGCCACAAAGTCCGCTTTGAAGGAATGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGGGGGCAAGCCCCATTaGTGGGCTTGTCCAGTAACT +
Preference number: 2 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRGGKPH*WACPVT
Trigger: AGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCCTGGGCAAAGCTGGCTaGGAGCCTGGGAAGCAGCCA +
Preference number: 2 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTLGKAG*EPGKQP
Trigger: TGGCTGCTTCCCAGGCTCTCAGCCAGCTTTGCCCAG...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGAGAGGGCAAGTATGCTaGAGAAACAAGAGAGGTAAT +
Preference number: 2 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKRGQVC*RNKRGN
Trigger: ATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCT...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCTGCCATAGTCACTGGTaGTCAAGCTTCCTGCCGCTG +
Preference number: 2 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCCHSHW*SSFLPL
Trigger: CAGCGGCAGGAAGCTTGAGCACCAGTGACTATGGCA...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCACAGAAGCCCCATATGTaGACAGGTAAGGAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: QMSPQKQAGAITYILFPPQKPHM*TGKEGS
Trigger: GCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTG...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGTTTGTCTTGTCTGTTTaGGGTTGGGGCAGAATCCAG +
Preference number: 2 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGEFVLSV*GWGRIQ
Trigger: CTGGATTCTGCCCCAACCCCAAACAGACAAGACAAA...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAATGACTTGGAGCCCCTaGATGAGCGGGAAGGCAGTG +
Preference number: 2 (lower is better)
Translates to: FDFVLSVWGWGRIQARAAMTWSP*MSGKAV
Trigger: CACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCAT...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAAAGCATCCCCATAGTTaGCCAGCAGCGTCACCAGTA +
Preference number: 2 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRKHPHS*PAASPV
Trigger: TACTGGTGACGCTGCTGGCCAACTATGGGGATGCTT...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR GCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCATCGAGCTTCCTCCTTTaGCAAGAAGAGTGCAAAACC +
Preference number: 2 (lower is better)
Translates to: QMSPQKQAGAITYILFPPSSFLL*QEECKT
Trigger: GGTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGA...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp AGCCACTTGGTCGAAGCTAGTGAAGTGGCGTGGATGGTCCTGCACAAAATGGGTTCTGCACCTCGGCCATaGAAAAGTATAGGGCAAACA +
Preference number: 2 (lower is better)
Translates to: SHLVEASEVAWMVLHKMGSAPRP*KSIGQT
Trigger: TGTTTGCCCTATACTTTTCCATGGCCGAGGTGCAGA...ACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGTGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 90 bp CAGAGAGCAGCACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTaGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTG +
Preference number: 2 (lower is better)
Translates to: QRAAQTAVRQLLYLT*SCLFGVGAESRLEL
Trigger: CAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGTGCTGCTCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCATTGTCTGTTTGGGGTTaGGGCAGAATCCAGGCTAGA +
Preference number: 2 (lower is better)
Translates to: FDFVLSVWGWGRIQARAALSVWG*GRIQAR
Trigger: TCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAA...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CAA 90 bp AAAAGCATGTACACCAAGAGTCTCTTCAACATGTCATGGAGCCTCTaGACCTTTCGAGCTTCCTCCTTTGCCAAGAAGAGTGCAAAACCA +
Preference number: 2 (lower is better)
Translates to: KSMYTKSLFNMSWSL*TFRASSFAKKSAKP
Trigger: TGGTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGAAAGGTCAAGAGGCTCCATGACATGTTGAAGAGACTCTTGGTGTACATGCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAAATAAATTAGCATCTTaGAGGCTGGGTACTCACTTG +
Preference number: 2 (lower is better)
Translates to: FDFVLSVWGWGRIQARAANKLAS*RLGTHL
Trigger: CAAGTGAGTACCCAGCCTCCAAGATGCTAATTTATT...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp GAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTaGCGTAGCCGTGGAGGGCCCAGCTCAGGGCTAGAC +
Preference number: 3 (lower is better)
Translates to: EGSGQNASCSRT*RSRGGPSSGLD
Trigger: GTCTAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227107.2
ENSMUST00000228581.2
3UTR GCA 72 bp TGCTCCGAGCTAGAAGGGTCTGGGCAGAATGCTTCCTaGAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGC +
Preference number: 3 (lower is better)
Translates to: CSELEGSGQNAS*SRTCRSRGGPS
Trigger: GCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCGGAGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000227107.2
ENSMUST00000228581.2
3UTR CCA 72 bp TCTGATCCAGCCCCTGACTGGCCCGAGAAAGGCGGCTaGGCAAAGCTGGCTGAGAGCCTGGGAAGCAGCCAG +
Preference number: 3 (lower is better)
Translates to: SDPAPDWPEKGG*AKLAESLGSSQ
Trigger: CTGGCTGCTTCCCAGGCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATCAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp CCCTGTTGGGGCCTACAGTCTGATCCAGCCCCTGACTaGCCCGAGAAAGGCGGCTGGGCAAAGCTGGCTGAG +
Preference number: 3 (lower is better)
Translates to: PCWGLQSDPAPD*PEKGGWAKLAE
Trigger: CTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATCAGACTGTAGGCCCCAACAGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACCACGGTGGCCCCAATaGCTGTCCAGCACCTGCCCG +
Preference number: 3 (lower is better)
Translates to: LLRSETSRSACCLAPDKGPRWPQ*LSSTCP
Trigger: CGGGCAGGTGCTGGACAGCAATTGGGGCCACCGTGG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp GATCCAGCCCCTGACTGGCCCGAGAAAGGCGGCTGGGCAAAGCTGGCTGAGAGCAGCTGCTGGGCAGCCTaGACCAAAAGCAGGAAGAGT +
Preference number: 3 (lower is better)
Translates to: DPAPDWPEKGGWAKLAESSCWAA*TKSRKS
Trigger: ACTCTTCCTGCTTTTGGTCAAGGCTGCCCAGCAGCT...GCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp GACAAGGGAGGAAAACAAGGCCACGGTGGCCCCAATTaGTGTCCAGCACCTGCCCGAGGCCAGACTCGGATC +
Preference number: 3 (lower is better)
Translates to: DKGGKQGHGGPN*CPAPARGQTRI
Trigger: GATCCGAGTCTGGCCTCGGGCAGGTGCTGGACAGCAATTGGGGCCACCGTGGCCTTGTTTTCCTCCCTTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp ACTGCACGGCTCCTGCTGTCAAGCCAGTTGTGCAGCTaGAGGAAGCCCAGTCGTGCACGGCTCTCCTCCAGA +
Preference number: 3 (lower is better)
Translates to: TARLLLSSQLCS*RKPSRARLSSR
Trigger: TCTGGAGGAGAGCCGTGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAGGAGCCGTGCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp GGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTaGGGAGGGGACCCTGGGTCCTGGCTGGCCACACAG +
Preference number: 3 (lower is better)
Translates to: GTHLVQYCCVLL*GGDPGSWLATQ
Trigger: CTGTGTGGCCAGCCAGGACCCAGGGTCCCCTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CCA 72 bp AAGCTCCACCATCTCATAGTCCTGGGGTTCCCATGCTaGGCGGTAGAGCTCGCCACGCAAGGCGTGGTACCG +
Preference number: 3 (lower is better)
Translates to: KLHHLIVLGFPC*AVELATQGVVP
Trigger: CGGTACCACGCCTTGCGTGGCGAGCTCTACCGCCCAGCATGGGAACCCCAGGACTATGAGATGGTGGAGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp GCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTaGTGTGTCCTCCTGTGGGGAGGGGACCCTGGGTCC +
Preference number: 3 (lower is better)
Translates to: ASWRLGTHLVQY*CVLLWGGDPGS
Trigger: GGACCCAGGGTCCCCTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp ACAAACACTGCACGGCTCCTGCTGTCAAGCCAGTTGTaGAGCTGCAGGAAGCCCAGTCGTGCACGGCTCTCC +
Preference number: 3 (lower is better)
Translates to: TNTARLLLSSQL*SCRKPSRARLS
Trigger: GGAGAGCCGTGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAGGAGCCGTGCAGTGTTTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR TCA 72 bp CAGCAGCATGGAGCCCCACAGCAGGGCTGTAGCGGGTaGGTTCTACAAACACTGCACGGCTCCTGCTGTCAA +
Preference number: 3 (lower is better)
Translates to: QQHGAPQQGCSG*VLQTLHGSCCQ
Trigger: TTGACAGCAGGAGCCGTGCAGTGTTTGTAGAACTCACCCGCTACAGCCCTGCTGTGGGGCTCCATGCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp CACCTGCCCGAGGCCAGACTCGGATCCAGTAATAGCTaGAGCTTCCCCTGTACCCCTGCCCTGGGTAACAAT +
Preference number: 3 (lower is better)
Translates to: HLPEARLGSSNS*SFPCTPALGNN
Trigger: ATTGTTACCCAGGGCAGGGGTACAGGGGAAGCTGCAGCTATTACTGGATCCGAGTCTGGCCTCGGGCAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp GAAAAGCTCCACCATCTCATAGTCCTGGGGTTCCCATaGTGGGCGGTAGAGCTCGCCACGCAAGGCGTGGTA +
Preference number: 3 (lower is better)
Translates to: EKLHHLIVLGFP*WAVELATQGVV
Trigger: TACCACGCCTTGCGTGGCGAGCTCTACCGCCCAGCATGGGAACCCCAGGACTATGAGATGGTGGAGCTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp AACGCAAATGGGCGGACACTGAAGGCAGCCAGTGCATaGCCGGCTACAGGGAACTCGAGGCGCAGTGTAACA +
Preference number: 3 (lower is better)
Translates to: NANGRTLKAASA*PATGNSRRSVT
Trigger: TGTTACACTGCGCCTCGAGTTCCCTGTAGCCGGCCATGCACTGGCTGCCTTCAGTGTCCGCCCATTTGCGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp AAGTGGCGTGGATGGTCCTGCACAAAATGGGTCCACTaGCGATCAGCAATGCCCAGCTGGGCCAGGCGTACA +
Preference number: 3 (lower is better)
Translates to: KWRGWSCTKWVH*RSAMPSWARRT
Trigger: TGTACGCCTGGCCCAGCTGGGCATTGCTGATCGCCAGTGGACCCATTTTGTGCAGGACCATCCACGCCACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp AGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGGATCCTGTCTCAGAGCCATTTaGCACCACACTCTGCCAGCC +
Preference number: 3 (lower is better)
Translates to: STTGDDLEPLDEREGSGSCLRAI*HHTLPA
Trigger: GGCTGGCAGAGTGTGGTGCAAAATGGCTCTGAGACA...GGATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp GGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATaGAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGC +
Preference number: 3 (lower is better)
Translates to: GRQQYLYPKELA*SRSAWPNLEGS
Trigger: GCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp GCACCACACTCTGCCAGCCAATGCCATAGTCACTGGTaGTCAAGCTTCCTGCCGCTGAACACATGTGCTCCG +
Preference number: 3 (lower is better)
Translates to: APHSASQCHSHW*SSFLPLNTCAP
Trigger: CGGAGCACATGTGTTCAGCGGCAGGAAGCTTGAGCACCAGTGACTATGGCATTGGCTGGCAGAGTGTGGTGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp TGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTaGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTG +
Preference number: 3 (lower is better)
Translates to: CSDLKPADLRAA*PQTREENKATV
Trigger: CACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CCA 72 bp CAGAACTCATCAGACCGGGTGATGGCCAGAAAGGCTTaGCTATCCAGCTCCTGCTTGATGGCGCTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: QNSSDRVMARKA*LSSSCLMALCR
Trigger: CCTGCAGAGCGCCATCAAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCATCACCCGGTCTGATGAGTTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp ACAAAATGGGTCCACTGGCGATCAGCAATGCCCAGCTaGGCCAGGCGTACAAGCCCTGTAGCTGCTGTCAGT +
Preference number: 3 (lower is better)
Translates to: TKWVHWRSAMPS*ARRTSPVAAVS
Trigger: ACTGACAGCAGCTACAGGGCTTGTACGCCTGGCCCAGCTGGGCATTGCTGATCGCCAGTGGACCCATTTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp AAGCTAGTGAAGTGGCGTGGATGGTCCTGCACAAAATaGGTCCACTGGCGATCAGCAATGCCCAGCTGGGCC +
Preference number: 3 (lower is better)
Translates to: KLVKWRGWSCTK*VHWRSAMPSWA
Trigger: GGCCCAGCTGGGCATTGCTGATCGCCAGTGGACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp AAGGCCCGACACAATGTCTTGCCAAAAACAGACCACTaGCGCACAAACCGCAGCTGCTGGGCAGCCTTGACC +
Preference number: 3 (lower is better)
Translates to: KARHNVLPKTDH*RTNRSCWAALT
Trigger: GGTCAAGGCTGCCCAGCAGCTGCGGTTTGTGCGCCAGTGGTCTGTTTTTGGCAAGACATTGTGTCGGGCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR TCA 72 bp CTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTaGAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGA +
Preference number: 3 (lower is better)
Translates to: LSSHSSPALAQI*NQQICVLPGPR
Trigger: TCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp AGGTGTCAGGCCTTGCTGTGCACGCACACCCATCTTTaGGCCAGGTCTGCACCTCGGCCATGGAAAAGTATA +
Preference number: 3 (lower is better)
Translates to: RCQALLCTHTHL*ARSAPRPWKSI
Trigger: TATACTTTTCCATGGCCGAGGTGCAGACCTGGCGCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp GTCAGCACCAGAGGAAATAAGCAGGATGGCCATCTGTaGATAGGCCACACCAAGCAGCACCAGGCCCAAGGT +
Preference number: 3 (lower is better)
Translates to: VSTRGNKQDGHL*IGHTKQHQAQG
Trigger: ACCTTGGGCCTGGTGCTGCTTGGTGTGGCCTATGCACAGATGGCCATCCTGCTTATTTCCTCTGGTGCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp CAGCTGAGCCACTTGGTCGAAGCTAGTGAAGTGGCGTaGATGGTCCTGCACAAAATGGGTCCACTGGCGATC +
Preference number: 3 (lower is better)
Translates to: QLSHLVEASEVA*MVLHKMGPLAI
Trigger: GATCGCCAGTGGACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGTGGCTCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR TCA 72 bp CATGTGACATCCATGGCCAGAACTCATCAGACCGGGTaGTGGCCAGAAAGGCTTGGCTATCCAGCTCCTGCT +
Preference number: 3 (lower is better)
Translates to: HVTSMARTHQTG*WPERLGYPAPA
Trigger: AGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCATCACCCGGTCTGATGAGTTCTGGCCATGGATGTCACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp CCCTGGGTCCTGGCTGGCCACACAGCCTTTTTAAAGTaGAGAAGCCCCATATGTGGACAGGTAAGGAAGGCA +
Preference number: 3 (lower is better)
Translates to: PWVLAGHTAFLK*RSPICGQVRKA
Trigger: TGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAGGCTGTGTGGCCAGCCAGGACCCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR GCA 72 bp TCTCAGAGCCATTTTGCACCACACTCTGCCAGCCAATaGCATAGTCACTGGTGCTCAAGCTTCCTGCCGCTG +
Preference number: 3 (lower is better)
Translates to: SQSHFAPHSASQ*HSHWCSSFLPL
Trigger: CAGCGGCAGGAAGCTTGAGCACCAGTGACTATGGCATTGGCTGGCAGAGTGTGGTGCAAAATGGCTCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp ACTTGGTCGAAGCTAGTGAAGTGGCGTGGATGGTCCTaGACAAAATGGGTCCACTGGCGATCAGCAATGCCC +
Preference number: 3 (lower is better)
Translates to: TWSKLVKWRGWS*TKWVHWRSAMP
Trigger: GGGCATTGCTGATCGCCAGTGGACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp CGGTCAAACTGGACAAGCAGACTTTCAAACACAGCATaGAGGCGAGAGGGCTCTGGTTCCAGCTTCAGCGTC +
Preference number: 3 (lower is better)
Translates to: RSNWTSRLSNTA*RREGSGSSFSV
Trigger: GACGCTGAAGCTGGAACCAGAGCCCTCTCGCCTCCATGCTGTGTTTGAAAGTCTGCTTGTCCAGTTTGACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCAGATGGCCAGAAAGGCTaGGCTATCCAGCTCCTGCTT +
Preference number: 3 (lower is better)
Translates to: QMSPQKQAGAITYILFPPDGQKG*AIQLLL
Trigger: AAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCATC...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR TCA 72 bp CTGGGATTTTTGGCTACTCTTCTGGGTCACGCCGGCTaGGGTCCAAGGTTTTCCTTATTTAGTCGGGCCGAC +
Preference number: 3 (lower is better)
Translates to: LGFLATLLGHAG*GPRFSLFSRAD
Trigger: GTCGGCCCGACTAAATAAGGAAAACCTTGGACCTCAGCCGGCGTGACCCAGAAGAGTAGCCAAAAATCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228550.2
3UTR GCA 72 bp GTGTCAAGGTGCCCTCAGTGGTTTCAGCTTGCAAGATaGGCATCATGCCCTCCAGCTTCTGCAGCATCTTCT +
Preference number: 3 (lower is better)
Translates to: VSRCPQWFQLAR*ASCPPASAASS
Trigger: AGAAGATGCTGCAGAAGCTGGAGGGCATGATGCGCATCTTGCAAGCTGAAACCACTGAGGGCACCTTGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226883.2
3UTR GCA 72 bp TTGCCAAAAACAGACCACTGGCGCACAAACCGCAGCTaGTGGGCAGCCTTGACCAAAAGCAGGAAGAGTAGT +
Preference number: 3 (lower is better)
Translates to: LPKTDHWRTNRS*WAALTKSRKSS
Trigger: ACTACTCTTCCTGCTTTTGGTCAAGGCTGCCCAGCAGCTGCGGTTTGTGCGCCAGTGGTCTGTTTTTGGCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp GGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTaGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCT +
Preference number: 3 (lower is better)
Translates to: GKPHWWACPVTS*HLSSHSSPALA
Trigger: AGCAAGGGCAGGACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCACAGTAGTCCTGCCCTaGCTCAGATCTGAAACCAGC +
Preference number: 3 (lower is better)
Translates to: LQMSPQKQAGAITYILFPTVVLP*LRSETS
Trigger: GCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGT...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp TCAGCAATGGTGGTGGGTGTCAAGGTGCCCTCAGTGGTTTCAGCTTGCAAGATGGATGTTCTTACGCATTaGGGCTCTCAGCTGCTGCTC +
Preference number: 3 (lower is better)
Translates to: SAMVVGVKVPSVVSACKMDVLTH*GSQLLL
Trigger: GAGCAGCAGCTGAGAGCCCAAATGCGTAAGAACATC...CATCTTGCAAGCTGAAACCACTGAGGGCACCTTGACACCCACCACCATTGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226883.2
3UTR-3UTR CAA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATCCTCTGTGGCCTGGTaGAGTCGGTCAAACTGGACA +
Preference number: 3 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRSSVAW*SRSNWT
Trigger: TGTCCAGTTTGACCGACTCAACCAGGCCACAGAGGA...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR GCA 72 bp ATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTaGCTGGCCCAACCTAGAGGGCAGCAGAAGGTAATA +
Preference number: 3 (lower is better)
Translates to: IPVPKRTGMQPF*LAQPRGQQKVI
Trigger: TATTACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp GGTGGGAGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTCTTCTTTATTTGACTTaGTCTTGTCTGTTTGGGGTT +
Preference number: 3 (lower is better)
Translates to: GGSTTGDDLEPLDEREGSLLYLT*SCLFGV
Trigger: AACCCCAAACAGACAAGACAAAGTCAAATAAAGAAG...ACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp GCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTaGGGCAGAATCCAGGCTAGAGCTGCAGATGAGCCC +
Preference number: 3 (lower is better)
Translates to: ASLFDFVLSVWG*GRIQARAADEP
Trigger: GGGCTCATCTGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR TCA 72 bp ACACCAAGAGTCTCTTCAACATGTCATGGAGCCTCTTaGCCTTTCGAGCTTCCTCCTTTGCCAAGAAGAGTG +
Preference number: 3 (lower is better)
Translates to: TPRVSSTCHGAS*PFELPPLPRRV
Trigger: CACTCTTCTTGGCAAAGGAGGAAGCTCGAAAGGTCAAGAGGCTCCATGACATGTTGAAGAGACTCTTGGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp CCACACAGCCTTTTTAAAGTGCAGAAGCCCCATATGTaGACAGGTAAGGAAGGCAGCAATACCTGTACCCAA +
Preference number: 3 (lower is better)
Translates to: PHSLFKVQKPHM*TGKEGSNTCTQ
Trigger: TTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAGGCTGTGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCACTTCTTTATTTGACTTaGTCTTGTCTGTTTGGGGTT +
Preference number: 3 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSLLYLT*SCLFGV
Trigger: AACCCCAAACAGACAAGACAAAGTCAAATAAAGAAG...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR-3UTR CAA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTTCGAGCTTCCTCCTTaGCCAAGAAGAGTGCAAAAC +
Preference number: 3 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHFELPP*PRRVQN
Trigger: GTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGAA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CCA 72 bp CAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTaGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAGAT +
Preference number: 3 (lower is better)
Translates to: QTASLFDFVLSV*GWGRIQARAAD
Trigger: ATCTGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CCA 72 bp AAAAGCATGTACACCAAGAGTCTCTTCAACATGTCATaGAGCCTCTTGACCTTTCGAGCTTCCTCCTTTGCC +
Preference number: 3 (lower is better)
Translates to: KSMYTKSLFNMS*SLLTFRASSFA
Trigger: GGCAAAGGAGGAAGCTCGAAAGGTCAAGAGGCTCCATGACATGTTGAAGAGACTCTTGGTGTACATGCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGGCCAGGGAACACCATaGCCTCCACAGGTCGCAGCG +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGGQGTP*PPQVAA
Trigger: CGCTGCGACCTGTGGAGGTCATGGTGTTCCCTGGCC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
68% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCACCTCTGAGCCCAACATaGAGCCAGGCCTGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: GQNASCSRTCRSRGGPSSPLSPT*SQACPG
Trigger: CCCAGGGCAGGCCTGGCTGCATGTTGGGCTCAGAGG...TGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ACGGGCCACAGAGCCCAGCTGAGCCACTTGGTCGAAGCTAGTGAAGTGGCGTGGCCAGCACCTCCAGGCTaGTCCTCCTGCTGGCCGAGC +
Preference number: 4 (lower is better)
Translates to: TGHRAQLSHLVEASEVAWPAPPG*SSCWPS
Trigger: GCTCGGCCAGCAGGAGGATCAGCCTGGAGGTGCTGG...CCACGCCACTTCACTAGCTTCGACCAAGTGGCTCAGCTGGGCTCTGTGGCCCGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGCAAGCACACCGAGGTaGGCAGTGGTAGAGACAGGC +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGASTPR*AVVETG
Trigger: GCCTGTCTCTACCACTGCTCACCTCGGTGTGCTTGC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGCCGTTATCACCCCCTaGCACCTGCAGCCCCTCAAT +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGAVITP*HLQPLN
Trigger: ATTGAGGGGCTGCAGGTGGCAGGGGGTGATAACGGC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
66% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp GAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGGTGAGCAGTGGTACCTaGACCTCGGCTCCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: EGSGQNASCSRTCRSRGGVSSGT*TSAPAG
Trigger: ACCGGCTGGAGCCGAGGTTCAGGTACCACTGCTCAC...CCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp AATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGGGCTACTCCCCATCACGCAGTaGACCTGGCCGCACTACCAG +
Preference number: 4 (lower is better)
Translates to: NASCSRTCRSRGGPSSGLLPITQ*TWPHYQ
Trigger: CTGGTAGTGCGGCCAGGTGCACTGCGTGATGGGGAG...TAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGGGCTAGACGTGGGTCTGAGCGCTTaGCTAGGGCCACAATCTCCT +
Preference number: 4 (lower is better)
Translates to: ASCSRTCRSRGGPSSGLDVGLSA*LGPQSP
Trigger: AGGAGATTGTGGCCCTAGGCAAGCGCTCAGACCCAC...GTCTAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGTGTCTCCAGCAGAGCTaGGCCAGCCCCCAAGGCCAG +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGCLQQS*ASPQGQ
Trigger: CTGGCCTTGGGGGCTGGCTCAGCTCTGCTGGAGACA...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGCACCAGAATCTACCTaGAGCACCAAGACTGAGCCG +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGAPEST*STKTEP
Trigger: CGGCTCAGTCTTGGTGCTTCAGGTAGATTCTGGTGC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCGTTCCCATAGGTAGGTaGCAGGGCTCCCACTGCCCA +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPVPIGR*QGSHCP
Trigger: TGGGCAGTGGGAGCCCTGCCACCTACCTATGGGAAC...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGTGTCAGCAATGGTGGTaGGTGTCAAGGTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGCQQWW*VSRCPQ
Trigger: CTGAGGGCACCTTGACACCCACCACCATTGCTGACA...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCCAGCTCCAAGGGCTGTaGGCCCTGCATGTCCAAGCT +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPQLQGL*ALHVQA
Trigger: AGCTTGGACATGCAGGGCCCACAGCCCTTGGAGCTG...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCGCTGCCCTGTGGGTGTaGGGTTTTGGTCCCCAGACA +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPAALWV*GFGPQT
Trigger: TGTCTGGGGACCAAAACCCCACACCCACAGGGCAGC...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGACAAACCGCAGCTGCTaGGCAGCCTTGACCAAAAGC +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGTNRSC*AALTKS
Trigger: GCTTTTGGTCAAGGCTGCCCAGCAGCTGCGGTTTGT...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGGCTGCACCACATCACTaGGGTTCGACAGGGCCCCAC +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGAAPHH*GSTGPH
Trigger: GTGGGGCCCTGTCGAACCTCAGTGATGTGGTGCAGC...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGTGGTGGGTGTCAAGGTaGCCTCAGTGGTTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGWWVSR*PQWFQL
Trigger: AAGCTGAAACCACTGAGGGCACCTTGACACCCACCA...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCTGGCTATCCAGCTCCTaGTTGATGGCGCTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPWLSSS*LMALCR
Trigger: CCTGCAGAGCGCCATCAAGCAGGAGCTGGATAGCCA...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGCACTCTGCCAGCCAATaGCATAGTCACTGGTGCTCA +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGHSASQ*HSHWCS
Trigger: TGAGCACCAGTGACTATGGCATTGGCTGGCAGAGTG...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGGTGTGGGTGGTAGATaGCATGGAGGTCTTCCAACT +
Preference number: 4 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGGVGGR*HGGLPT
Trigger: AGTTGGAAGACCTCCATGCCATCTACCACCCACACC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGTGCTGTCAGCAATGGTaGTGGGTGTCAAGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: GRMLPAVAPAVAVEGPAQCCQQW*WVSRCP
Trigger: AGGGCACCTTGACACCCACCACCATTGCTGACAGCA...CTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AAGGCGTGGTACCGCCAACGCAGGAGGATAGCCCCTAACCTCAGGGCACCCCACAAGCTGGAGCTGTCCTaGAAAGCCTTGTCACCGGGG +
Preference number: 4 (lower is better)
Translates to: KAWYRQRRRIAPNLRAPHKLELS*KALSPG
Trigger: CCCCGGTGACAAGGCTTTCCAGGACAGCTCCAGCTT...GTGGGGTGCCCTGAGGTTAGGGGCTATCCTCCTGCGTTGGCGGTACCACGCCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTCAAGCTTCCTGCCGCTGAACACATGTGCTCCGAGCTAGAAGGGTCTGGGCAGGCTGCACCACATCACTaGGGTTCGACAGGGCCCCAC +
Preference number: 4 (lower is better)
Translates to: LKLPAAEHMCSELEGSGQAAPHH*GSTGPH
Trigger: GTGGGGCCCTGTCGAACCTCAGTGATGTGGTGCAGC...CTGCCCAGACCCTTCTAGCTCGGAGCACATGTGTTCAGCGGCAGGAAGCTTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCCCATCAGCCAGTACCTaGTGGATCAGGTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: GSGQNASCSRTCRSRGGPPSAST*WIRSSS
Trigger: AGATGAAGACCTGATCCATCAGGTACTGGCTGATGG...GGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTACTTGGAGCCCCTGGATaGGCGGGAAGGCAGTGGATC +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVLGAPG*AGRQWI
Trigger: GATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAG...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGTCAACATCTAGGGCCTaGTGCCCTGTGGGTGTGGGG +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGSTSRA*CPVGVG
Trigger: CCCCACACCCACAGGGCAGCAGGCCCTAGATGTTGA...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCACTTTGCCAAGAAGAGTaGAAAACCATGTGGGGGCCG +
Preference number: 4 (lower is better)
Translates to: GQNASCSRTCRSRGGPSSLCQEE*KTMWGP
Trigger: CGGCCCCCACATGGTTTTGCACTCTTCTTGGCAAAG...TGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000228581.2
CDS-3UTR GCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCCTGTCAAGCCAGTTGTaGAGCTGCAGGAAGCCCAGT +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPLSSQL*SCRKPS
Trigger: ACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAG...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGAGGCTGAGGTTGGCCTaGCTGGCTCCATTTTGCGCC +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGRLRLA*LAPFCA
Trigger: GGCGCAAAATGGAGCCAGCCAGGCCAACCTCAGCCT...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp AAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCACTCAAGGGACACAATaGGGACTCGCCCACTTCGGA +
Preference number: 4 (lower is better)
Translates to: KGLGRMLPAVAPAVAVEGTQGTQ*GLAHFG
Trigger: TCCGAAGTGGGCGAGTCCCCATTGTGTCCCTTGAGT...GCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCTGCTGTCAGCAATGGTaGTGGGTGTCAAGGTGCCCT +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPCCQQW*WVSRCP
Trigger: AGGGCACCTTGACACCCACCACCATTGCTGACAGCA...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCTCCAGGGCAGACCAGTaGAAATGGCTCGTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPSRADQ*KWLVRF
Trigger: GAACCTGACGAGCCATTTCCACTGGTCTGCCCTGGA...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGGGCTATCCAGGGCAGACCAGTaGAAATGGCTCGTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: NASCSRTCRSRGGPSSGLSRADQ*KWLVRF
Trigger: GAACCTGACGAGCCATTTCCACTGGTCTGCCCTGGA...TAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGAAGCTGGCTGAGAGCCTaGGAAGCAGCCAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGSWLRA*EAARGG
Trigger: CCCTCCCCTGGCTGCTTCCCAGGCTCTCAGCCAGCT...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
3UTR CAA 72 bp AGACAAGGGAGGAAAACAAGGCCACGGTGGCCCCAATaGCTGTCCAGCACCTGCCCGAGGCCAGACTCGGAT +
Preference number: 4 (lower is better)
Translates to: RQGRKTRPRWPQ*LSSTCPRPDSD
Trigger: ATCCGAGTCTGGCCTCGGGCAGGTGCTGGACAGCAATTGGGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CAA 72 bp GTATCACCAGTAGGCACCGTGCCCAGGTGTCAGGCCTaGCTGTGCACGCACACCCATCTTTGCGCCAGGTCT +
Preference number: 4 (lower is better)
Translates to: VSPVGTVPRCQA*LCTHTHLCARS
Trigger: AGACCTGGCGCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACACCTGGGCACGGTGCCTACTGGTGATAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GATCCAGCCCCTGACTGGCCCGAGAAAGGCGGCTGGGCAAAGCTGGCTGAGAGCTCATCATCTCCTCACTaGAGTACTGGCACAGGGATG +
Preference number: 4 (lower is better)
Translates to: DPAPDWPEKGGWAKLAESSSSPH*STGTGM
Trigger: CATCCCTGTGCCAGTACTTCAGTGAGGAGATGATGA...GCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ACACATGTGCTCCGAGCTAGAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACGGGACTGTTCCCAACTaGGGCCCATGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: THVLRARRVWAECFLQSHGTVPN*GPCWLV
Trigger: GACCAGCCAGCATGGGCCTCAGTTGGGAACAGTCCC...GTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCGGAGCACATGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACTGGGCAAAGCTGGCTaGGAGCCTGGGAAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGLGKAG*EPGKQP
Trigger: TGGCTGCTTCCCAGGCTCTCAGCCAGCTTTGCCCAG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp AGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGGGCTCAGTGGTTTCAGCTTaGAAGATGCGCATCATGCCC +
Preference number: 4 (lower is better)
Translates to: RMLPAVAPAVAVEGPAQGSVVSA*KMRIMP
Trigger: GGGCATGATGCGCATCTTGCAAGCTGAAACCACTGA...GCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATGGGCCCCCTGCACGTaGTTGCCTCAGACTGTACCA +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVWAPCT*LPQTVP
Trigger: TGGTACAGTCTGAGGCAACCACGTGCAGGGGGCCCA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGACTTGGCCAGGACAGCTaGAAGCCAGGGGACACTGTA +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGLGQDS*KPGDTV
Trigger: TACAGTGTCCCCTGGCTTCCAGCTGTCCTGGCCAAG...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATGCCGACGTGAGCAGTaGTACCTGAACCTCGGCTCC +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVCRREQ*YLNLGS
Trigger: GGAGCCGAGGTTCAGGTACCACTGCTCACGTCGGCA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGGAGGCCCATGCTGGCTaGTCTCTCCTCCCCCACTGT +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGEEAHAG*SLLPHC
Trigger: ACAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCTC...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCGAGCCCATGGGCCAGTaGGGCACACCAGGCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPEPMGQ*GTPGRQ
Trigger: CTGCCTGCCTGGTGTGCCCCACTGGCCCATGGGCTC...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCTGAAGGGCACAGAGTaGGGACCCTCGCCCCAGGGC +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPLKGTE*GPSPQG
Trigger: GCCCTGGGGCGAGGGTCCCCACTCTGTGCCCTTCAG...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
3UTR CAA 72 bp TCTACAAACACTGCACGGCTCCTGCTGTCAAGCCAGTaGTGCAGCTGCAGGAAGCCCAGTCGTGCACGGCTC +
Preference number: 4 (lower is better)
Translates to: STNTARLLLSSQ*CSCRKPSRARL
Trigger: GAGCCGTGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAGGAGCCGTGCAGTGTTTGTAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 72 bp GCTCCCATGAGCTCGGGCAAGGCCCGACACAATGTCTaGCCAAAAACAGACCACTGGCGCACAAACCGCAGC +
Preference number: 4 (lower is better)
Translates to: APMSSGKARHNV*PKTDHWRTNRS
Trigger: GCTGCGGTTTGTGCGCCAGTGGTCTGTTTTTGGCAAGACATTGTGTCGGGCCTTGCCCGAGCTCATGGGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAGCTGGAACACCAGGATaGGCAGGCTGCAGAAGAGTT +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGAGTPG*AGCRRV
Trigger: AACTCTTCTGCAGCCTGCTCATCCTGGTGTTCCAGC...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACCCACTGCCCATGGCTaGCAACAGGTAAGGCTGCTG +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGPTAHG*QQVRLL
Trigger: CAGCAGCCTTACCTGTTGTCAGCCATGGGCAGTGGG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGATGTCTCACTCTGTGTTaGAGCCACGCAGGCCCAATG +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGCLTLC*SHAGPM
Trigger: CATTGGGCCTGCGTGGCTTCAACACAGAGTGAGACA...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCATGGTTCAGGAAAGATaGACTGGACATGGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPMVQER*TGHGWE
Trigger: CTCCCAGCCATGTCCAGTTCATCTTTCCTGAACCAT...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGTCATCTTCATCAGGGTaGAGCCGCTTGGCCACAAGG +
Preference number: 4 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKSSSSG*SRLATR
Trigger: CCTTGTGGCCAAGCGGCTTCACCCTGATGAAGATGA...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAGCTGCTGGGCAGCCTTaGCCAAAAGCAGGAAGAGTA +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGAAGQP*PKAGRV
Trigger: TACTCTTCCTGCTTTTGGTCAAGGCTGCCCAGCAGC...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACAGGTACCAGGACTCTaGAGGGCACAGAGTGGGGAC +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGQVPGL*RAQSGD
Trigger: GTCCCCACTCTGTGCCCTTCAGAGTCCTGGTACCTG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGACATTGCTCCTGTGCTTaGAGCCAGGGTGCCTTCTCT +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGHCSCA*SQGAFS
Trigger: AGAGAAGGCACCCTGGCTGCAAGCACAGGAGCAATG...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGCTGGCAGTCAGGCTGTaGAGCCAGGGTACGAGGTCT +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGELAVRL*SQGTRS
Trigger: AGACCTCGTACCCTGGCTGCACAGCCTGACTGCCAG...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp AAGGCGTGGTACCGCCAACGCAGGAGGATAGCCCCTAACCTCAGGGCACCCCACGACACATCTGGGGCCTaGTCATACTCATTGAGCACA +
Preference number: 4 (lower is better)
Translates to: KAWYRQRRRIAPNLRAPHDTSGA*SYSLST
Trigger: TGTGCTCAATGAGTATGAGCAGGCCCCAGATGTGTC...GTGGGGTGCCCTGAGGTTAGGGGCTATCCTCCTGCGTTGGCGGTACCACGCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGAAGTCATTCTTCACTTaGCCAGCGAAGGCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: EGSGQNASCSRTCRSRGGKSFFT*PAKASV
Trigger: CACAGAGGCCTTCGCTGGGCAAGTGAAGAATGACTT...CCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCACCTCTGAGCCCAACATaGAGCCAGGCCTGCCCTGGG +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPPLSPT*SQACPG
Trigger: CCCAGGGCAGGCCTGGCTGCATGTTGGGCTCAGAGG...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGTGTCAGGCCTTGCTGTaGACGCACACCCATCTTTGC +
Preference number: 4 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKCQALL*THTHLC
Trigger: GCAAAGATGGGTGTGCGTGCACAGCAAGGCCTGACA...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTAGAAGAGTTAGAGGCCTaGCCTGCCCCACAGAGGCAT +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVEELEA*PAPQRH
Trigger: ATGCCTCTGTGGGGCAGGCCAGGCCTCTAACTCTTC...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAGGGACAGTGAGATGCTaGAACACCAGGATGAGCAGG +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGGTVRC*NTRMSR
Trigger: CCTGCTCATCCTGGTGTTCCAGCATCTCACTGTCCC...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCTTGACTGAGCCCAACTaGTTCTCAGCTGTGACTCTG +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPLTEPN*FSAVTL
Trigger: CAGAGTCACAGCTGAGAACCAGTTGGGCTCAGTCAA...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GATCCAGCCCCTGACTGGCCCGAGAAAGGCGGCTGGGCAAAGCTGGCTGAGAGCGTACCAGTCTGTGTCTaGAATGCCATAGATGCCACT +
Preference number: 4 (lower is better)
Translates to: DPAPDWPEKGGWAKLAESVPVCV*NAIDAT
Trigger: AGTGGCATCTATGGCATTCCAGACACAGACTGGTAC...GCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCAGCAGTTGTACTCATTaGGCTGGGACACTGAGTGCA +
Preference number: 4 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPSSCTH*AGTLSA
Trigger: TGCACTCAGTGTCCCAGCCCAATGAGTACAACTGCT...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGGATCCGCTGCTCACAACAGATaGGTCACTGAGCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: STTGDDLEPLDEREGSGSAAHNR*VTEQVW
Trigger: CCAGACCTGCTCAGTGACCCATCTGTTGTGAGCAGC...GGATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAAACTGTGGCATTGACTaGGCCCAACTGGTTCTCAGC +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGNCGID*AQLVLS
Trigger: GCTGAGAACCAGTTGGGCTCAGTCAATGCCACAGTT...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TCCGAGCTAGAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCATGCCCTCCAGCTTCTaGAGCATCTTCTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: SELEGSGQNASCSRTCRSMPSSF*SIFFRQ
Trigger: CTGCCTGAAGAAGATGCTGCAGAAGCTGGAGGGCAT...GCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGTCAAAGAAGCCTCTCTaGAACTCAGCCACGAGGAGC +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGSKKPL*NSATRS
Trigger: GCTCCTCGTGGCTGAGTTGCAGAGAGGCTTCTTTGA...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGATCAAAGAAGCCTCTCTaGAACTCAGCCACGAGGAGC +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGSKKPL*NSATRS
Trigger: GCTCCTCGTGGCTGAGTTGCAGAGAGGCTTCTTTGA...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp TCCGAGCTAGAAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCATCGCTGCAGTGTGCTaGTCACAACAGATGGGTCAC +
Preference number: 4 (lower is better)
Translates to: SELEGSGQNASCSRTCRSIAAVC*SQQMGH
Trigger: GTGACCCATCTGTTGTGAGCAGCACACTGCAGCGAT...GCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGCTTTGCCAAGAAGAGTaGAAAACCATGTGGGGGCCG +
Preference number: 4 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKLCQEE*KTMWGP
Trigger: CGGCCCCCACATGGTTTTGCACTCTTCTTGGCAAAG...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp ACCTGCCGTAGCCGTGGAGGGCCCAGCTCAGGGCTAGACTGGTTCCCATGGACATCGAGCTTCCTCCTTTaGCAAGAAGAGTGCAAAACC +
Preference number: 4 (lower is better)
Translates to: TCRSRGGPSSGLDWFPWTSSFLL*QEECKT
Trigger: GGTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGA...TGTCCATGGGAACCAGTCTAGCCCTGAGCTGGGCCCTCCACGGCTACGGCAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228581.2
CDS-3UTR GCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGTCCTGGGGTTCCCATaGTGGGCGGTAGAGCTCGCC +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRVLGFP*WAVELA
Trigger: GGCGAGCTCTACCGCCCAGCATGGGAACCCCAGGAC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAGGAACATCCTGGCTGTaGAGGGTGACCAAGTACTGT +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGGTSWL*RVTKYC
Trigger: ACAGTACTTGGTCACCCTCCACAGCCAGGATGTTCC...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGACCAAGACTGAGCCGTTaGTTGGCACATAGATGTGGC +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGPRLSR*LAHRCG
Trigger: GCCACATCTATGTGCCAACCAACGGCTCAGTCTTGG...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGAGCAGGATTTCAAAGTaGACTGGCTGCCCAGGCGCC +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGESRISK*TGCPGA
Trigger: GGCGCCTGGGCAGCCAGTCCACTTTGAAATCCTGCT...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAGTACTGTCTGGTTGGTaGCTTCTTCCTTCCGACCTG +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGVLSGW*LLPSDL
Trigger: CAGGTCGGAAGGAAGAAGCCACCAACCAGACAGTAC...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATCTTCTTCCCCTGAGTaGCCCAGCACAGTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVSSSPE*PSTVSV
Trigger: CACACTCACTGTGCTGGGCCACTCAGGGGAAGAAGA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAACCACAAAAAGGGGCTaGAATCCAGGAGGCAGGACA +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGTTKRG*NPGGRT
Trigger: TGTCCTGCCTCCTGGATTCCAGCCCCTTTTTGTGGT...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGGATCCGAATGCTGTCAGCAATaGTGGTGGGTGTCAAGGTGC +
Preference number: 4 (lower is better)
Translates to: STTGDDLEPLDEREGSGSECCQQ*WWVSRC
Trigger: GCACCTTGACACCCACCACCATTGCTGACAGCATTC...GGATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGATGGAGAAGTGGCAGCTaGGCCCCAAGGCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGWRSGS*APRLCH
Trigger: ATGGCAAAGCCTTGGGGCCCAGCTGCCACTTCTCCA...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGGATCCGTCCCATGCTGTAGGTaGTGTCTCTCACAACTCCGT +
Preference number: 4 (lower is better)
Translates to: STTGDDLEPLDEREGSGSVPCCR*CLSQLR
Trigger: ACGGAGTTGTGAGAGACACCACCTACAGCATGGGAC...GGATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGCGCTGGGAGGGAAGCTaGCACCAATCCACCCTGAAA +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGERWEGS*HQSTLK
Trigger: TTTCAGGGTGGATTGGTGCCAGCTTCCCTCCCAGCG...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
3UTR CAA 72 bp CCAGAACTCATCAGACCGGGTGATGGCCAGAAAGGCTaGGCTATCCAGCTCCTGCTTGATGGCGCTCTGCAG +
Preference number: 4 (lower is better)
Translates to: PELIRPGDGQKG*AIQLLLDGALQ
Trigger: CTGCAGAGCGCCATCAAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCATCACCCGGTCTGATGAGTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGGCAGCTTTCCAGGCTaGAGGCCTCACCCCGGGGAT +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPGSFPG*RPHPGD
Trigger: ATCCCCGGGGTGAGGCCTTCAGCCTGGAAAGCTGCC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGTGTGATCCCCCTCCTTaGGCCTGGGCAACATCAACA +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGECDPPP*AWATST
Trigger: TGTTGATGTTGCCCAGGCTCAAGGAGGGGGATCACA...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGACCGGAAGGCTACGTCTaGGCCAGCCTCTACCATGGG +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRPEGYV*ASLYHG
Trigger: CCCATGGTAGAGGCTGGCTCAGACGTAGCCTTCCGG...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGTCATCATCTCCTCACTaGAGTACTGGCACAGGGATG +
Preference number: 4 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKSSSPH*STGTGM
Trigger: CATCCCTGTGCCAGTACTTCAGTGAGGAGATGATGA...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCAGGCACCATCTTCCTCTaGGCCCAACATGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSGTIFL*AQHAAR
Trigger: CCTGGCTGCATGTTGGGCTCAGAGGAAGATGGTGCC...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCGGGACTGTTCCCAACTaGGGCCCATGCTGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCGTVPN*GPCWLV
Trigger: GACCAGCCAGCATGGGCCTCAGTTGGGAACAGTCCC...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGCAGCTGCCACAAAGATaGTATCTGGCTCACTGGTTC +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGQLPQR*YLAHWF
Trigger: GAACCAGTGAGCCAGATAGCATCTTTGTGGCAGCTG...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGAAGAGCAGAGCCAGCTaGCAGCAGGATTTCAAAGTG +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGKSRAS*QQDFKV
Trigger: CACTTTGAAATCCTGCTGGCAGCTGGCTCTGCTCTT...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GAGGTGAGCAGTGGTAGAGACAGGCCAGTGCTGAGTCGCCGTAACGCAAATGGGCAGAGACCTGTTGAGTaGAACAACAGCAGCACCCAG +
Preference number: 4 (lower is better)
Translates to: EVSSGRDRPVLSRRNANGQRPVE*NNSSTQ
Trigger: CTGGGTGCTGCTGTTGTTGCACTCAACAGGTCTCTG...CCCATTTGCGTTACGGCGACTCAGCACTGGCCTGTCTCTACCACTGCTCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCAACGCTGCCCAGGCTGTaGGGGGTGGCAATTTGGAAG +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPTLPRL*GVAIWK
Trigger: CTTCCAAATTGCCACCCCGCACAGCCTGGGCAGCGT...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp TCCATTCCTTCAAAGCGGACTTTGTGGCGGAACTCCTTGACCTTGCTGAAGCCCTCAACATCTAGGGCCTaGTGCCCTGTGGGTGTGGGG +
Preference number: 4 (lower is better)
Translates to: SIPSKRTLWRNSLTLLKPSTSRA*CPVGVG
Trigger: CCCCACACCCACAGGGCAGCAGGCCCTAGATGTTGA...GGGCTTCAGCAAGGTCAAGGAGTTCCGCCACAAAGTCCGCTTTGAAGGAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGAAGTCATTCTTCACTTaGCCAGCGAAGGCCTCTGTG +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGKSFFT*PAKASV
Trigger: CACAGAGGCCTTCGCTGGGCAAGTGAAGAATGACTT...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTGCGGGAAAGGTGTGCTaGAGCAAGGTGGGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSAGKVC*SKVGPP
Trigger: TGGGGGCCCCACCTTGCTCCAGCACACCTTTCCCGC...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGATATCGGTACGGGAATaGGGGCCAAGAATAGGCAAC +
Preference number: 4 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKISVRE*GPRIGN
Trigger: GTTGCCTATTCTTGGCCCCCATTCCCGTACCGATAT...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGCCCCCAGTTTGGGTGTaGGTAGTGTCTTCAGTGCCA +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGEPPVWV*VVSSVP
Trigger: TGGCACTGAAGACACTACCCACACCCAAACTGGGGG...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACCCAGAAGGGTAGAGTaGAGCCAGCTGCCACAAAGA +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGPRRVE*SQLPQR
Trigger: TCTTTGTGGCAGCTGGCTCCACTCTACCCTTCTGGG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGAACTCAAGGGACACAATaGGGACTCGCCCACTTCGGA +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGTQGTQ*GLAHFG
Trigger: TCCGAAGTGGGCGAGTCCCCATTGTGTCCCTTGAGT...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGACAAGGTCCCAGTTCCTaGGGCAATGAAGAAGGTGTA +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGQGPSS*GNEEGV
Trigger: TACACCTTCTTCATTGCCCCAGGAACTGGGACCTTG...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTGGATCCTCAGGAAAGATGAACTaGACATGGCTGGGAGGCACA +
Preference number: 4 (lower is better)
Translates to: STTGDDLEPLDEREGSGSSGKMN*TWLGGT
Trigger: TGTGCCTCCCAGCCATGTCCAGTTCATCTTTCCTGA...GGATCCACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTAGCAGGCTGAGCCCATaGGCCAGTGGGGCACACCAG +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSSRLSP*ASGAHQ
Trigger: CTGGTGTGCCCCACTGGCCCATGGGCTCAGCCTGCT...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTAATGGCCAGAAAGGCTTaGCTATCCAGCTCCTGCTTG +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVMARKA*LSSSCL
Trigger: CAAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCAT...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACGAGCTAGAAGGGTCTaGGCAGAATGCTTCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGRARRV*AECFLQ
Trigger: CTGCAGGAAGCATTCTGCCCAGACCCTTCTAGCTCG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCATCGCCACGCAAGGCGTaGTACCGCCAACGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAASPRKA*YRQRRR
Trigger: CCTCCTGCGTTGGCGGTACCACGCCTTGCGTGGCGA...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCACAACTGGGGATGACTTaGAGCCCCTGGATGAGCGGG +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPQLGMT*SPWMSG
Trigger: CCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTG...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
3UTR CAA 72 bp TCCATTGTGCCCATGGCCTTGAAGGCTCTGGAGTTGTaGCTCCAGCTGGTAGACGTCCTCTGTGGCCTGGTT +
Preference number: 4 (lower is better)
Translates to: SIVPMALKALEL*LQLVDVLCGLV
Trigger: AACCAGGCCACAGAGGACGTCTACCAGCTGGAGCAACAACTCCAGAGCCTTCAAGGCCATGGGCACAATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCACTGTCACTCTCAGGCTaGGGTTGGCCTGGCTGGCTC +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAALSLSG*GWPGWL
Trigger: GAGCCAGCCAGGCCAACCTCAGCCTGAGAGTGACAG...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAGCCCTCTTCTTCCCCTaGGTGGCCCAGCACAGTGAG +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAAALFFP*VAQHSE
Trigger: CTCACTGTGCTGGGCCACTCAGGGGAAGAAGAGGGC...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACATAACACAGAAGACTaGGTGGGTCTGAGCGCTTGC +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGHNTED*VGLSAC
Trigger: GCAAGCGCTCAGACCCACTCAGTCTTCTGTGTTATG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTGTGAGCAGTGGTACCTaGACCTCGGCTCCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSVSSGT*TSAPAG
Trigger: ACCGGCTGGAGCCGAGGTTCAGGTACCACTGCTCAC...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGCCACAGAGCCCAGCTaGGCCACTTGGTCGAAGCTA +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRATEPS*ATWSKL
Trigger: TAGCTTCGACCAAGTGGCTCAGCTGGGCTCTGTGGC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCACCATGGGGGCTCCCTaGTCCACAGATGGGCTCAAA +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPTMGAP*STDGLK
Trigger: TTTGAGCCCATCTGTGGAGCAGGGAGCCCCCATGGT...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCACCTGCAGAGGCAGTaGTACCTCCACTTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPHLQRQ*YLHFRL
Trigger: GAGCCTGAAGTGGAGGTAGCACTGCCTCTGCAGGTG...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGAATGCCCTCCAGCTTCTaGAGCATCTTCTTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGMPSSF*SIFFRQ
Trigger: CTGCCTGAAGAAGATGCTGCAGAAGCTGGAGGGCAT...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGCTGGAATGCCATAGATaGCACTTTGGTGGAGACAGT +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGLECHR*HFGGDS
Trigger: ACTGTCTCCACCAAAGTGGCATCTATGGCATTCCAG...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACAGCGCAGCTTCATTTaGTGCAAGCACCTCCTTCTC +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGQRSFI*CKHLLL
Trigger: GAGAAGGAGGTGCTTGCAGCAAATGAAGCTGCGCTG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATCAGTACTGTCTGGTTaGTGGCTTCTTCCTTCCGAC +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVSVLSG*WLLPSD
Trigger: GTCGGAAGGAAGAAGCCACCAACCAGACAGTACTGA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TCCATTCCTTCAAAGCGGACTTTGTGGCGGAACTCCTTGACCTTGCTGAAGCCCGCTGCTGCTCAACGTTaGGCTCTGACACATCTGGGG +
Preference number: 4 (lower is better)
Translates to: SIPSKRTLWRNSLTLLKPAAAQR*ALTHLG
Trigger: CCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGC...GGGCTTCAGCAAGGTCAAGGAGTTCCGCCACAAAGTCCGCTTTGAAGGAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCCAGCTCCAAGGGCTGTaGGCCCTGCATGTCCAAGCT +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCQLQGL*ALHVQA
Trigger: AGCTTGGACATGCAGGGCCCACAGCCCTTGGAGCTG...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGCCACTTGGTCGAAGCTAGTGAAGTGGCGTGGATGGTCCTGCACAAAATGGGTTGGAGAAGTGGCAGCTaGGCCCCAAGGCTTTGCCAT +
Preference number: 4 (lower is better)
Translates to: SHLVEASEVAWMVLHKMGWRSGS*APRLCH
Trigger: ATGGCAAAGCCTTGGGGCCCAGCTGCCACTTCTCCA...ACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGTGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCAGGAATGGAGAAGTaGCAGCTGGGCCCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSSGMEK*QLGPKA
Trigger: AGCCTTGGGGCCCAGCTGCCACTTCTCCATTCCTGA...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGGTCCCATGCTGTAGGTaGTGTCTCTCACAACTCCGT +
Preference number: 4 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGEVPCCR*CLSQLR
Trigger: ACGGAGTTGTGAGAGACACCACCTACAGCATGGGAC...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGTCTGCACCTCGGCCATaGAAAAGTATAGGGCAAACA +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGSAPRP*KSIGQT
Trigger: TGTTTGCCCTATACTTTTCCATGGCCGAGGTGCAGA...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATCAGCAATGCCCAGCTaGGCCAGGCGTACAAGCCCT +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRSAMPS*ARRTSP
Trigger: AGGGCTTGTACGCCTGGCCCAGCTGGGCATTGCTGA...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCAATGACTTGGAGCCCCTaGATGAGCGGGAAGGCAGTG +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSMTWSP*MSGKAV
Trigger: CACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCAT...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCACCCGAGAAAGGCGGCTaGGCAAAGCTGGCTGAGAGC +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAAPEKGG*AKLAES
Trigger: GCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGG...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
3UTR CAA 72 bp CGGGAAGGCAGTGGATCCATTCCTTCAAAGCGGACTTaGTGGCGGAACTCCTTGACCTTGCTGAAGCCCATC +
Preference number: 4 (lower is better)
Translates to: REGSGSIPSKRT*WRNSLTLLKPI
Trigger: GATGGGCTTCAGCAAGGTCAAGGAGTTCCGCCACAAAGTCCGCTTTGAAGGAATGGATCCACTGCCTTCCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCTGTCAGCGAGAGCTTaGAGATGGCAGCACTCTGGT +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPLSARA*RWQHSG
Trigger: ACCAGAGTGCTGCCATCTTCAAGCTCTCGCTGACAG...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATGTAATGTTGTCACCTaGCTCCACAGAAGCACTGAC +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVCNVVT*LHRSTD
Trigger: GTCAGTGCTTCTGTGGAGTCAGGTGACAACATTACA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCGTACCTTCAGCCAGCTaGCCCCAGAAGGGTAGAGTG +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCVPSAS*PQKGRV
Trigger: CACTCTACCCTTCTGGGGTCAGCTGGCTGAAGGTAC...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCTATCCAGCTCCTGCTTaGTGGCGCTCTGCAGGCGAT +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCYPAPA*WRSAGD
Trigger: ATCGCCTGCAGAGCGCCATCAAGCAGGAGCTGGATA...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCAGAAGCAGAAGGCACTaGAGGCCTCAGTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPRSRRH*RPQSPV
Trigger: CACTGGAGACTGAGGCCTGCAGTGCCTTCTGCTTCT...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTTGTCAGGCTCACTGCTaGCTTCTGGGACCGCTGCTG +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPCQAHC*LLGPLL
Trigger: CAGCAGCGGTCCCAGAAGGCAGCAGTGAGCCTGACA...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGGCAGTCAGGCTGTaGAGCCAGGGTACGAGGTCT +
Preference number: 4 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVLAVRL*SQGTRS
Trigger: AGACCTCGTACCCTGGCTGCACAGCCTGACTGCCAG...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGATCAGTGGTTTCAGCTTaGAAGATGCGCATCATGCCC +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGSVVSA*KMRIMP
Trigger: GGGCATGATGCGCATCTTGCAAGCTGAAACCACTGA...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTACGCACACCCATCTTTaGGCCAGGTCTGCACCTCGG +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPTHTHL*ARSAPR
Trigger: CCGAGGTGCAGACCTGGCGCAAAGATGGGTGTGCGT...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGATCCCTGCTCCACAGATaGGCTCAAATACACAGTCAG +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGSLLHR*AQIHSQ
Trigger: CTGACTGTGTATTTGAGCCCATCTGTGGAGCAGGGA...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCACTGGCCGTTGGCAGCTaGCAGTACGATATATCTCCC +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSLAVGS*QYDISP
Trigger: GGGAGATATATCGTACTGCCAGCTGCCAACGGCCAG...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCTCTTCTTCCCCTGAGTaGCCCAGCACAGTGAGTGTG +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPSSSPE*PSTVSV
Trigger: CACACTCACTGTGCTGGGCCACTCAGGGGAAGAAGA...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GCCCATCCAGAGCCGAAGCCTACGCAGGAAAAGCTCCACCATCTCATAGTCCTGCTGCAGGATTTCCACTaGGTTCTGGTAGGACAATGG +
Preference number: 4 (lower is better)
Translates to: AHPEPKPTQEKLHHLIVLLQDFH*VLVGQW
Trigger: CCATTGTCCTACCAGAACCCAGTGGAAATCCTGCAG...CAGGACTATGAGATGGTGGAGCTTTTCCTGCGTAGGCTTCGGCTCTGGATGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATGTCAGCAATGGTGGTaGGTGTCAAGGTGCCCTCAG +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSCQQWW*VSRCPQ
Trigger: CTGAGGGCACCTTGACACCCACCACCATTGCTGACA...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCTCAGGAATGGAGAAGTaGCAGCTGGGCCCCAAGGCT +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCSGMEK*QLGPKA
Trigger: AGCCTTGGGGCCCAGCTGCCACTTCTCCATTCCTGA...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGATCAGGAAAGATGAACTaGACATGGCTGGGAGGCACA +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGSGKMN*TWLGGT
Trigger: TGTGCCTCCCAGCCATGTCCAGTTCATCTTTCCTGA...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGCTGCCCTGTGGGTGTaGGGTTTTGGTCCCCAGACA +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPAALWV*GFGPQT
Trigger: TGTCTGGGGACCAAAACCCCACACCCACAGGGCAGC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCGATCCAGCCCCTGACTaGCCCGAGAAAGGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTDPAPD*PEKGGW
Trigger: CCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATC...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCAAGAGAGTCCCAGCCTTaGCACAGACCCATTGATGCA +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSRESQP*HRPIDA
Trigger: TGCATCAATGGGTCTGTGTCAAGGCTGGGACTCTCT...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCGCCCTCTTCTTCCCCTaGGTGGCCCAGCACAGTGAG +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTALFFP*VAQHSE
Trigger: CTCACTGTGCTGGGCCACTCAGGGGAAGAAGAGGGC...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTCCAGCACCTCCAGGCTaGTCCTCCTGCTGGCCGAGC +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGPAPPG*SSCWPS
Trigger: GCTCGGCCAGCAGGAGGATCAGCCTGGAGGTGCTGG...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCGGCAGCAGTCGCTTCTaGAAACCTTCCACCAGTCCT +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCGSSRF*KPSTSP
Trigger: AGGACTGGTGGAAGGTTTTCAGAAGCGACTGCTGCC...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGTGCTTGCAGCCAGGGTaGCTTCTCTGCCACCAGGCG +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLECLQPG*LLCHQA
Trigger: CGCCTGGTGGCAGAGAAGGCACCCTGGCTGCAAGCA...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATGCTGTGCCAATGGATaGAGAGGTCCAGACAGGCCT +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRCCANG*RGPDRP
Trigger: AGGCCTGTCTGGACCTCTGCATCCATTGGCACAGCA...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTCCCCATCACGCAGTaGACCTGGCCGCACTACCAG +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLELPITQ*TWPHYQ
Trigger: CTGGTAGTGCGGCCAGGTGCACTGCGTGATGGGGAG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTGTGGGTCTGAGCGCTTaGCTAGGGCCACAATCTCCT +
Preference number: 4 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVVGLSA*LGPQSP
Trigger: AGGAGATTGTGGCCCTAGGCAAGCGCTCAGACCCAC...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTAGCCAGTTGTGCAGCTaGAGGAAGCCCAGTCGTGCA +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPSQLCS*RKPSRA
Trigger: TGCACGACTGGGCTTCCTGCAGCTGCACAACTGGCT...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAACCCGAAAGAAGCTGTaGGAGAAGTGGGGGCTAGGG +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAATRKKL*EKWGLG
Trigger: CCCTAGCCCCCACTTCTCCCACAGCTTCTTTCGGGT...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCAGAATGCTGTCAGCAATaGTGGTGGGTGTCAAGGTGC +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSECCQQ*WWVSRC
Trigger: GCACCTTGACACCCACCACCATTGCTGACAGCATTC...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGTTGATGCTTGCAGATaGTTCAGGAAAGATGAACTG +
Preference number: 4 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKVDACR*FRKDEL
Trigger: CAGTTCATCTTTCCTGAACCATCTGCAAGCATCAAC...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCGCTGCTCACAACAGATaGGTCACTGAGCAGGTCTGG +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCAAHNR*VTEQVW
Trigger: CCAGACCTGCTCAGTGACCCATCTGTTGTGAGCAGC...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGGAGGCCCATGCTGGCTaGTCTCTCCTCCCCCACTGT +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLEEAHAG*SLLPHC
Trigger: ACAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCTC...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
3UTR CAA 72 bp GCGAATAAATTAGCATCTTGGAGGCTGGGTACTCACTaGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: ANKLASWRLGTH*VQYCCVLLWGG
Trigger: CCCTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAATTTATTCGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACGGCCACCTCCACAGCTaGATCCACCAGCACACCACC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNGHLHS*IHQHTT
Trigger: GGTGGTGTGCTGGTGGATTCAGCTGTGGAGGTGGCC...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCACTTCTACTGTCACTGTaGAGTTCTGGGCCCGCAGGT +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAALLLSL*SSGPAG
Trigger: ACCTGCGGGCCCAGAACTTCACAGTGACAGTAGAAG...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGTGCTAGCTTTGAGTaGAGTGAGAGAAAAGCACTT +
Preference number: 4 (lower is better)
Translates to: LLRSETSRSACCLAPDKGGASFE*SERKAL
Trigger: AAGTGCTTTTCTCTCACTTCACTCAAAGCTAGCACC...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTCTGGCTCACTGGTTCTaGTACTCAGACCACCCACAG +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSLAHWF*YSDHPQ
Trigger: CTGTGGGTGGTCTGAGTATCAGAACCAGTGAGCCAG...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTCAACGTTGGGCTCTaGCACATCTGGGGCCTGCTC +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLELNVGL*HIWGLL
Trigger: GAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCGGCACCATCTTCCTCTaGGCCCAACATGCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTGTIFL*AQHAAR
Trigger: CCTGGCTGCATGTTGGGCTCAGAGGAAGATGGTGCC...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTCTACCAAGAGCAGGCTaGGCCCATGGGCCAGTGGGG +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGLPRAG*AHGPVG
Trigger: CCCCACTGGCCCATGGGCTCAGCCTGCTCTTGGTAG...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCATCATCTTCATCAGGGTaGAGCCGCTTGGCCACAAGG +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAASSSSG*SRLATR
Trigger: CCTTGTGGCCAAGCGGCTTCACCCTGATGAAGATGA...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCAAATGGGCGGACACTaGAGGCAGCCAGTGCATGGC +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLEQMGGH*RQPVHG
Trigger: GCCATGCACTGGCTGCCTTCAGTGTCCGCCCATTTG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCCTCTGTGGCCTGGTTaGGTCGGTCAAACTGGACAA +
Preference number: 4 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVPLWPG*VGQTGQ
Trigger: TTGTCCAGTTTGACCGACTCAACCAGGCCACAGAGG...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTAACACAGGTCTGTGTTaGATTGCCCAGCAGGCCCCA +
Preference number: 4 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVNTGLC*IAQQAP
Trigger: TGGGGCCTGCTGGGCAATGCAACACAGACCTGTGTT...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCGACAGTTTCCTGCTGTaGCAATGGATGCAGAGGTCC +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCDSFLL*QWMQRS
Trigger: GGACCTCTGCATCCATTGGCACAGCAGGAAACTGTC...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTCACCCCCTGCCACCTaGAGCCCCTCAATGAACTGG +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHSPPAT*SPSMNW
Trigger: CCAGTTCATTGAGGGGCTGCAGGTGGCAGGGGGTGA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACCGCCGCATCAGCACCTaGAGAGGCAGTGCTACCTCC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNRRIST*RGSATS
Trigger: GGAGGTAGCACTGCCTCTGCAGGTGCTGATGCGGCG...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGGACTACCCTTATAGATaGAGAAATTCTCACAGTAGC +
Preference number: 4 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGDYPYR*RNSHSS
Trigger: GCTACTGTGAGAATTTCTGCATCTATAAGGGTAGTC...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATACGCTGCCCAGGCTGTaGGGGGTGGCAATTTGGAAG +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHTLPRL*GVAIWK
Trigger: CTTCCAAATTGCCACCCCGCACAGCCTGGGCAGCGT...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGATTGAAGACAGTGTTGTaGAAAGTCAGAGACTGCTTA +
Preference number: 4 (lower is better)
Translates to: STLALRGQCEAQAFPGKGLKTVL*KVRDCL
Trigger: TAAGCAGTCTCTGACTTTCCACAACACTGTCTTCAA...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTAGTGGCCAGCAGGGTTaGCTGCTTCTACTGTCACTG +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPSGQQG*LLLLSL
Trigger: CAGTGACAGTAGAAGCAGCCAACCCTGCTGGCCACT...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAACCACAAAAAGGGGCTaGAATCCAGGAGGCAGGACA +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRTTKRG*NPGGRT
Trigger: TGTCCTGCCTCCTGGATTCCAGCCCCTTTTTGTGGT...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCACTGCAGGATTTCCACTaGGTTCTGGTAGGACAATGG +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPLQDFH*VLVGQW
Trigger: CCATTGTCCTACCAGAACCCAGTGGAAATCCTGCAG...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AGCCACTTGGTCGAAGCTAGTGAAGTGGCGTGGATGGTCCTGCACAAAATGGGTTTGTACTCATTGGGCTaGGACACTGAGTGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: SHLVEASEVAWMVLHKMGLYSLG*DTECRY
Trigger: GTACCTGCACTCAGTGTCCCAGCCCAATGAGTACAA...ACCCATTTTGTGCAGGACCATCCACGCCACTTCACTAGCTTCGACCAAGTGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCACAAGGTCCCAGTTCCTaGGGCAATGAAGAAGGTGTA +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPQGPSS*GNEEGV
Trigger: TACACCTTCTTCATTGCCCCAGGAACTGGGACCTTG...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCCAGGAGAGATCAGACTaGACACAGGTCCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCQERSD*TQVPCC
Trigger: ACAGCATGGGACCTGTGTCCAGTCTGATCTCTCCTG...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAACGTCCTCTGTGGCCTaGTTGAGTCGGTCAAACTGG +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAATSSVA*LSRSNW
Trigger: CCAGTTTGACCGACTCAACCAGGCCACAGAGGACGT...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAAGAGTTGAGGGACAGTaGGATGCTGGAACACCAGGA +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAARVEGQ*DAGTPG
Trigger: TCCTGGTGTTCCAGCATCTCACTGTCCCTCAACTCT...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTCAAGGGGGATGGGGTaGATGACTCTCAGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHSRGMG*MTLSPA
Trigger: AGCTGGGCTGAGAGTCATTCACCCCATCCCCCTTGA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCTGTGCAATCTTGCTTaGGAAAATCCACCTCAGGAG +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPLCNLA*ENPPQE
Trigger: CTCCTGAGGTGGATTTTCTCAAGCAAGATTGCACAG...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CATGGGGGCAAGCCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCACTTGTTCACATGGCTTaGCAAAACCAATGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: HGGKPHWWACPVTSWHLSLVHMA*QNQCQW
Trigger: CCACTGGCATTGGTTTTGTCAAGCCATGTGAACAAG...TGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGGCTTGCCCCCATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTATGAGCCACCTTCAATaGTGGGTACCAGACGCTCAG +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSMSHLQ*WVPDAQ
Trigger: CTGAGCGTCTGGTACCCATCATTGAAGGTGGCTCAT...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACCTCAACGTTGGGCTCTaGCACATCTGGGGCCTGCTC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNLNVGL*HIWGLL
Trigger: GAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAG...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGAAGCTGGAGCTGCTTaGGAGAAGCCACATGACACT +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPEAGAA*EKPHDT
Trigger: AGTGTCATGTGGCTTCTCTCAAGCAGCTCCAGCTTC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGGTGTTGCTTCTACTTaGACCTCTGTCTCCAGCAGA +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRGVAST*TSVSSR
Trigger: TCTGCTGGAGACAGAGGTGCAAGTAGAAGCAACACC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCAAGTGCAGGCCAGGTaGAGCAAAGGTGTGGGTGGT +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLEQVQAR*SKGVGG
Trigger: ACCACCCACACCTTTGCTGCACCTGGCCTGCACTTG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCATGGTGGGTGTCAAGGTaGCCTCAGTGGTTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAAWWVSR*PQWFQL
Trigger: AAGCTGAAACCACTGAGGGCACCTTGACACCCACCA...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTATCGCTGCAGTGTGCTaGTCACAACAGATGGGTCAC +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSIAAVC*SQQMGH
Trigger: GTGACCCATCTGTTGTGAGCAGCACACTGCAGCGAT...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTCCCACTGTCATACACTaGACAGTAGCCCCAGTACCA +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSPTVIH*TVAPVP
Trigger: TGGTACTGGGGCTACTGTGCAGTGTATGACAGTGGG...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTACTGTCTGGTTGGTaGCTTCTTCCTTCCGACCTG +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPVLSGW*LLPSDL
Trigger: CAGGTCGGAAGGAAGAAGCCACCAACCAGACAGTAC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCGCTGCTGCTCAACGTTaGGCTCTGACACATCTGGGG +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTAAAQR*ALTHLG
Trigger: CCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGC...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCGTACCAGTCTGTGTCTaGAATGCCATAGATGCCACT +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPVPVCV*NAIDAT
Trigger: AGTGGCATCTATGGCATTCCAGACACAGACTGGTAC...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGAGCTCTGGGCAGCCTaGTCTGAGTTGTTTGGCACC +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHELWAA*SELFGT
Trigger: GGTGCCAAACAACTCAGACCAGGCTGCCCAGAGCTC...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGCGCTGACAGAGGTCTaGGGCTGTACAATGGTAGAA +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPALTEV*GCTMVE
Trigger: TTCTACCATTGTACAGCCCCAGACCTCTGTCAGCGC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAAGCAGTTGTACTCATTaGGCTGGGACACTGAGTGCA +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRSSCTH*AGTLSA
Trigger: TGCACTCAGTGTCCCAGCCCAATGAGTACAACTGCT...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTCAGGAGAGATCAGACTaGACACAGGTCCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPQERSD*TQVPCC
Trigger: ACAGCATGGGACCTGTGTCCAGTCTGATCTCTCCTG...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCACAATCTCCACTGTGTaGTCCCCCTCCTTGAGCCTG +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTTISTV*SPSLSL
Trigger: CAGGCTCAAGGAGGGGGATCACACAGTGGAGATTGT...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTATCTGGTATATTACATTaGAGACAGTGTTGTGGAAAG +
Preference number: 4 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVSGILH*RQCCGK
Trigger: CTTTCCACAACACTGTCTTCAATGTAATATACCAGA...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTGAAGTTGTGTGTCACTaGTGGATGCCCATGGACAGT +
Preference number: 4 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVEVVCH*WMPMDS
Trigger: ACTGTCCATGGGCATCCATCAGTGACACACAACTTC...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCACTTCAACTGTGGCATTaGCTGAGCCCAACTGGTTCT +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAALQLWH*LSPTGS
Trigger: AGAACCAGTTGGGCTCAGTCAATGCCACAGTTGAAG...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCTTGAGAGAAGCCACATaGCACTCACGCTGGGAGGGA +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTLREAT*HSRWEG
Trigger: TCCCTCCCAGCGTGAGTGTCATGTGGCTTCTCTCAA...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACACTCATCAGACCGGGTaGTGGCCAGAAAGGCTTGGC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNTHQTG*WPERLG
Trigger: GCCAAGCCTTTCTGGCCATCACCCGGTCTGATGAGT...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTAGGCTCTCGTTACTGTaGACAAAGGATGGGCACACA +
Preference number: 4 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVRLSLL*TKDGHT
Trigger: TGTGTGCCCATCCTTTGTGCACAGTAACGAGAGCCT...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTGGTAGAAAACTCTGCTaGAGTGAGAAAGGCTTCCCG +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSGRKLC*SEKGFP
Trigger: CGGGAAGCCTTTCTCACTGCAGCAGAGTTTTCTACC...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCAAAGCATCAAAAGGTATaGAGACATTGGCTCCTGGAC +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPKHQKV*RHWLLD
Trigger: GTCCAGGAGCCAATGTCTGCATACCTTTTGATGCTT...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCAGACACATCTGGGGCCTaGTCATACTCATTGAGCACA +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAADTSGA*SYSLST
Trigger: TGTGCTCAATGAGTATGAGCAGGCCCCAGATGTGTC...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTTTTCAGCTTGCAAGATaGGCATCATGCCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPFQLAR*ASCPPA
Trigger: AGCTGGAGGGCATGATGCGCATCTTGCAAGCTGAAA...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTGCCATAGTCACTGGTaGTCAAGCTTCCTGCCGCTG +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHCHSHW*SSFLPL
Trigger: CAGCGGCAGGAAGCTTGAGCACCAGTGACTATGGCA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCCATGGACAGTCACATTaGAGGAGCCATCTCCAAAAG +
Preference number: 4 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCHGQSH*RSHLQK
Trigger: CTTTTGGAGATGGCTCCTCCAATGTGACTGTCCATG...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCATGTGCCTTGTTCACATaGCTTGACAAAACCAATGCC +
Preference number: 4 (lower is better)
Translates to: QMSPQKQAGAITYILFPPCALFT*LDKTNA
Trigger: GGCATTGGTTTTGTCAAGCCATGTGAACAAGGCACA...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTTTGTACTCATTGGGCTaGGACACTGAGTGCAGGTAC +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSLYSLG*DTECRY
Trigger: GTACCTGCACTCAGTGTCCCAGCCCAATGAGTACAA...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGCCGACGTGAGCAGTaGTACCTGAACCTCGGCTCC +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGCRREQ*YLNLGS
Trigger: GGAGCCGAGGTTCAGGTACCACTGCTCACGTCGGCA...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCACATGCACCTaGTGTTCCTTTGCCCAGCGT +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTCTTCT*CSFAQR
Trigger: ACGCTGGGCAAAGGAACATCAGGTGCATGTGGTACA...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTAAGGCCCTCACCAGCTaGGAAGCAGAAGGCACTGCA +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGKALTS*EAEGTA
Trigger: TGCAGTGCCTTCTGCTTCTCAGCTGGTGAGGGCCTT...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCCCTGGACAGTTTCCTaGTGTGCCAATGGATGCAGA +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLEPWTVS*CANGCR
Trigger: TCTGCATCCATTGGCACAGCAGGAAACTGTCCAGGG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCTGGAAAGTCAGAGACTaGTTATCATCAATGGTCCAC +
Preference number: 4 (lower is better)
Translates to: LQMSPQKQAGAITYILFPWKVRD*LSSMVH
Trigger: GTGGACCATTGATGATAAGCAGTCTCTGACTTTCCA...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTTGTAAACAACACCACTaGCACCAGCCAATTCAGCAC +
Preference number: 4 (lower is better)
Translates to: ISILEAGYSLGPILLCPPCKQHH*HQPIQH
Trigger: GTGCTGAATTGGCTGGTGGCAGTGGTGTTGTTTACA...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTTCCTCCCCCACTGTCTaGAGTATCAGAGTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSSSPTV*SIRVSV
Trigger: AACAGAAACTCTGATACTGCAGACAGTGGGGGAGGA...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTGAGCTCTGGGCAGCCTaGTCTGAGTTGTTTGGCACC +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGELWAA*SELFGT
Trigger: GGTGCCAAACAACTCAGACCAGGCTGCCCAGAGCTC...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGGCGCTGACAGAGGTCTaGGGCTGTACAATGGTAGAA +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLEALTEV*GCTMVE
Trigger: TTCTACCATTGTACAGCCCCAGACCTCTGTCAGCGC...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp ACATGTGACATCCATGGCCAGAACTCATCAGACCGGGTGATGGCCAGAAAGGCTGTTGATGCTTGCAGATaGTTCAGGAAAGATGAACTG +
Preference number: 4 (lower is better)
Translates to: TCDIHGQNSSDRVMARKAVDACR*FRKDEL
Trigger: CAGTTCATCTTTCCTGAACCATCTGCAAGCATCAAC...AGCCTTTCTGGCCATCACCCGGTCTGATGAGTTCTGGCCATGGATGTCACATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
3UTR CAA 72 bp GCACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTaGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGG +
Preference number: 4 (lower is better)
Translates to: AQTAVRQLLYLT*SCLFGVGAESR
Trigger: CCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTTGCCCCCAAACCACTaGGCTGTGGCAGTGGCATTA +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGLPPNH*AVAVAL
Trigger: TAATGCCACTGCCACAGCTCAGTGGTTTGGGGGCAA...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATATGGTTCAGGAAAGATaGACTGGACATGGCTGGGAG +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHMVQER*TGHGWE
Trigger: CTCCCAGCCATGTCCAGTTCATCTTTCCTGAACCAT...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCCCATCAGCCAGTACCTaGTGGATCAGGTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTPSAST*WIRSSS
Trigger: AGATGAAGACCTGATCCATCAGGTACTGGCTGATGG...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACGATACCCACAGCCCATaGATCTTGTTCATCCGCTCC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNDTHSP*ILFIRS
Trigger: GGAGCGGATGAACAAGATGCATGGGCTGTGGGTATC...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGTTGGAAGCATTGAGCTaGAGAGAGAAACTGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLELEALS*REKLPA
Trigger: GGCTGGCAGTTTCTCTCTGCAGCTCAATGCTTCCAA...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCATTCTTCCTTCCGACCTaGTTTCCACACTATGAGGTT +
Preference number: 4 (lower is better)
Translates to: FDFVLSVWGWGRIQARAAFFLPT*FPHYEV
Trigger: AACCTCATAGTGTGGAAAGCAGGTCGGAAGGAAGAA...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGTTTCAGCTTGCAAGATaGGCATCATGCCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLEFQLAR*ASCPPA
Trigger: AGCTGGAGGGCATGATGCGCATCTTGCAAGCTGAAA...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACCAGCGCAGCTTCATTTaGTGCAAGCACCTCCTTCTC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNQRSFI*CKHLLL
Trigger: GAGAAGGAGGTGCTTGCAGCAAATGAAGCTGCGCTG...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACACTGTGCACAAAGGATaGGCACACAAGCTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNTVHKG*AHKLQD
Trigger: GTCCTGGAGCTTGTGTGCCCATCCTTTGTGCACAGT...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCCAAGCTTCTTCCAGATaGACAGGCAGGTTGGTCATC +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTQASSR*TGRLVI
Trigger: GATGACCAACCTGCCTGTCCATCTGGAAGAAGCTTG...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCTCTCAGCCCAGCTATTaGAGAGACCACACTGAAGCT +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTSQPSY*RDHTEA
Trigger: AGCTTCAGTGTGGTCTCTCCAATAGCTGGGCTGAGA...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGACTGATGGATGCCCATaGACAGTCACATTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLETDGCP*TVTLEE
Trigger: CTCCTCCAATGTGACTGTCCATGGGCATCCATCAGT...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTCAGTACTGTCTGGTTaGTGGCTTCTTCCTTCCGAC +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHSVLSG*WLLPSD
Trigger: GTCGGAAGGAAGAAGCCACCAACCAGACAGTACTGA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CCA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACAAGCATCCCCATAGTTaGCCAGCAGCGTCACCAGTA +
Preference number: 4 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNKHPHS*PAASPV
Trigger: TACTGGTGACGCTGCTGGCCAACTATGGGGATGCTT...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTCAAAGCGGACTTTGTaGCGGAACTCCTTGACCTTG +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHSKRTL*RNSLTL
Trigger: CAAGGTCAAGGAGTTCCGCCACAAAGTCCGCTTTGA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTCATAACACAGAAGACTaGGTGGGTCTGAGCGCTTGC +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGHNTED*VGLSAC
Trigger: GCAAGCGCTCAGACCCACTCAGTCTTCTGTGTTATG...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTTGGAGACTAGGAAGTaGTGGATGGCAGGACTGTCC +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGLETRK*WMAGLS
Trigger: GGACAGTCCTGCCATCCAGCACTTCCTAGTCTCCAA...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATCTGGGTAGAAAACTCTaGTGCAGTGAGAAAGGCTTC +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHLGRKL*CSEKGF
Trigger: GAAGCCTTTCTCACTGCAGCAGAGTTTTCTACCCAG...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR GCA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGACTACCCTTATAGATaGAGAAATTCTCACAGTAGC +
Preference number: 4 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRDYPYR*RNSHSS
Trigger: GCTACTGTGAGAATTTCTGCATCTATAAGGGTAGTC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTCAGAGACCTGTTGAGTaGAACAACAGCAGCACCCAG +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGQRPVE*NNSSTQ
Trigger: CTGGGTGCTGCTGTTGTTGCACTCAACAGGTCTCTG...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCCTGGAATGCCATAGATaGCACTTTGGTGGAGACAGT +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTLECHR*HFGGDS
Trigger: ACTGTCTCCACCAAAGTGGCATCTATGGCATTCCAG...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGTCCTCCCCCACTGTCTaGAGTATCAGAGTTTCTGTT +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLESSPTV*SIRVSV
Trigger: AACAGAAACTCTGATACTGCAGACAGTGGGGGAGGA...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCTCGAGCTTCCTCCTTTaGCAAGAAGAGTGCAAAACC +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTSSFLL*QEECKT
Trigger: GGTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGA...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CCA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGGCTCTTCAAGCTTCTaGGTAGAAAACTCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHGSSSF*VENSAA
Trigger: TGCAGCAGAGTTTTCTACCCAGAAGCTTGAAGAGCC...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
3UTR CAA 72 bp TACACCAAGAGTCTCTTCAACATGTCATGGAGCCTCTaGACCTTTCGAGCTTCCTCCTTTGCCAAGAAGAGT +
Preference number: 4 (lower is better)
Translates to: YTKSLFNMSWSL*TFRASSFAKKS
Trigger: ACTCTTCTTGGCAAAGGAGGAAGCTCGAAAGGTCAAGAGGCTCCATGACATGTTGAAGAGACTCTTGGTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCAGTCTGTGTCTGGAATaGCATAGATGCCACTTTGGT +
Preference number: 4 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTSLCLE*HRCHFG
Trigger: ACCAAAGTGGCATCTATGGCATTCCAGACACAGACT...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR GCA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGAGTCTGTGTCTGGAATaGCATAGATGCCACTTTGGT +
Preference number: 4 (lower is better)
Translates to: LYLTLSCLFGVGAESRLESLCLE*HRCHFG
Trigger: ACCAAAGTGGCATCTATGGCATTCCAGACACAGACT...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTCACCAGACATTCCCATaGCAAAGTTCTCAGTATCCC +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGHQTFP*QSSQYP
Trigger: GGGATACTGAGAACTTTGTCATGGGAATGTCTGGTG...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR TCA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTGACCTCCACAAAAGCTaGGTCATTGGTAGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGDLHKS*VIGRRD
Trigger: ATCTCTTCTACCAATGACTCAGCTTTTGTGGAGGTC...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 90 bp GAAGTAGGTTGTGGGACAGGTCTAGCGCGGTGGCGTCAGCCGGGATaGGCAGACTCGGCCCTAGCGTCTGCAGCCAGCGGCCGGAGCAAT +
Preference number: 5 (lower is better)
Translates to: EVGCGTGLARWRQPG*ADSALASAASGRSN
Trigger: ATTGCTCCGGCCGCTGGCTGCAGACGCTAGGGCCGAGTCTGCGCATCCCGGCTGACGCCACCGCGCTAGACCTGTCCCACAACCTACTTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 90 bp GCACACACTTGGGGGCCGGCTCAGTCCTGTTGTCAGGCTCACTGCTaGCTTCTGGGACCGCTGCTGCTCCTCCTGAGGGCCGGTACACCT +
Preference number: 5 (lower is better)
Translates to: AHTWGPAQSCCQAHC*LLGPLLLLLRAGTP
Trigger: AGGTGTACCGGCCCTCAGGAGGAGCAGCAGCGGTCCCAGAAGGCAGCAGTGAGCCTGACAACAGGACTGAGCCGGCCCCCAAGTGTGTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 90 bp CAGGCACACACTTGGGGGCCGGCTCAGTCCTGTTGTCAGGCTCACTaGTGCCTTCTGGGACCGCTGCTGCTCCTCCTGAGGGCCGGTACA +
Preference number: 5 (lower is better)
Translates to: QAHTWGPAQSCCQAH*CLLGPLLLLLRAGT
Trigger: TGTACCGGCCCTCAGGAGGAGCAGCAGCGGTCCCAGAAGGCAGCAGTGAGCCTGACAACAGGACTGAGCCGGCCCCCAAGTGTGTGCCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 90 bp CAGGGCCCTCACTCTGGCTGCCGTCTCCCAGTTCCCATAGGTAGGTaGCAGGGCTCCCACTGCCCATGGCTGACAACAGGTAAGGCTGCT +
Preference number: 5 (lower is better)
Translates to: QGPHSGCRLPVPIGR*QGSHCPWLTTGKAA
Trigger: AGCAGCCTTACCTGTTGTCAGCCATGGGCAGTGGGAGCCCTGCCACCTACCTATGGGAACTGGGAGACGGCAGCCAGAGTGAGGGCCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGATGGCCAGAAAGGCTaGGCTATCCAGCTCCTGCTT +
Preference number: 5 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGDGQKG*AIQLLL
Trigger: AAGCAGGAGCTGGATAGCCAAGCCTTTCTGGCCATC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
63% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 90 bp AGCCCATGGGCCAGTGGGGCACACCAGGCAGGCAGCAGTCGCTTCTaGAAACCTTCCACCAGTCCTGTCCTGGAAAGCCTTGTCACCGGG +
Preference number: 5 (lower is better)
Translates to: SPWASGAHQAGSSRF*KPSTSPVLESLVTG
Trigger: CCCGGTGACAAGGCTTTCCAGGACAGGACTGGTGGAAGGTTTTCAGAAGCGACTGCTGCCTGCCTGGTGTGCCCCACTGGCCCATGGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 90 bp CTCAGGCCAGGGAACACCATGACCTCCACAGGTCGCAGCGGGCCCTaGACAGTTTCCTGCTGTGCCAATGGATGCAGAGGTCCAGACAGG +
Preference number: 5 (lower is better)
Translates to: LRPGNTMTSTGRSGP*TVSCCANGCRGPDR
Trigger: CCTGTCTGGACCTCTGCATCCATTGGCACAGCAGGAAACTGTCCAGGGCCCGCTGCGACCTGTGGAGGTCATGGTGTTCCCTGGCCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GATCCAGCCCCTGACTGGCCCGAGAAAGGCGGCTGGGCAAAGCTGGCTGAGAGCGAGCAGTTGTACTCATaGGGCTGGGACACTGAGTGC +
Preference number: 5 (lower is better)
Translates to: DPAPDWPEKGGWAKLAESEQLYS*GWDTEC
Trigger: GCACTCAGTGTCCCAGCCCAATGAGTACAACTGCTC...GCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GATCCAGCCCCTGACTGGCCCGAGAAAGGCGGCTGGGCAAAGCTGGCTGAGAGCTGTGGGTGTGGGGTTTaGGTCCCCAGACACCTTACT +
Preference number: 5 (lower is better)
Translates to: DPAPDWPEKGGWAKLAESCGCGV*VPRHLT
Trigger: AGTAAGGTGTCTGGGGACCAAAACCCCACACCCACA...GCTCTCAGCCAGCTTTGCCCAGCCGCCTTTCTCGGGCCAGTCAGGGGCTGGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp ACACTGCACAGTAGCCCCAGTACCAGGCGCCCAGCAGGTCCGGTGCAGAGTAGGGTAGGAACCAGGTTGTaGGCCCCATCAGCCAGTACC +
Preference number: 5 (lower is better)
Translates to: TLHSSPSTRRPAGPVQSRVGTRL*APSAST
Trigger: GGTACTGGCTGATGGGGCCAACAACCTGGTTCCTAC...CCTACTCTGCACCGGACCTGCTGGGCGCCTGGTACTGGGGCTACTGTGCAGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS TCA 90 bp CCAGTCCTGTCCTGGAAAGCCTTGTCACCGGGGACTGTTCCCAACTaGGGCCCATGCTGGCTGGTCTCTCCTCCCCCACTGTCTGCAGTA +
Preference number: 5 (lower is better)
Translates to: PVLSWKALSPGTVPN*GPCWLVSPPPLSAV
Trigger: TACTGCAGACAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCTCAGTTGGGAACAGTCCCCGGTGACAAGGCTTTCCAGGACAGGACTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 90 bp CAATCCACCCTGAAACTGCTACAGCTACAGCTACCAAGAGCAGGCTaGGCCCATGGGCCAGTGGGGCACACCAGGCAGGCAGCAGTCGCT +
Preference number: 5 (lower is better)
Translates to: QSTLKLLQLQLPRAG*AHGPVGHTRQAAVA
Trigger: AGCGACTGCTGCCTGCCTGGTGTGCCCCACTGGCCCATGGGCTCAGCCTGCTCTTGGTAGCTGTAGCTGTAGCAGTTTCAGGGTGGATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGTGCCCCACAGAGGCATaGATTCTGCTCCGAGAGGGC +
Preference number: 5 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKCPTEA*ILLREG
Trigger: GCCCTCTCGGAGCAGAATCAATGCCTCTGTGGGGCA...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp AAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCCAGATGCAGGCCAGCTaGAGGGTTACTGTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: KGLGRMLPAVAPAVAVEGQMQAS*RVTVVC
Trigger: GCAGACAACAGTAACCCTCAAGCTGGCCTGCATCTG...GCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCAGCTGCTGGGCAGCCTaGACCAAAAGCAGGAAGAGT +
Preference number: 5 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPSCWAA*TKSRKS
Trigger: ACTCTTCCTGCTTTTGGTCAAGGCTGCCCAGCAGCT...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 90 bp CCAGAGAGGCACCATCTTCCTCTGAGCCCAACATGCAGCCAGGCCTaGCCTGGGTCAATCGCTGCAGTGTGCTGCTCACAACAGATGGGT +
Preference number: 5 (lower is better)
Translates to: PERHHLPLSPTCSQA*PGSIAAVCCSQQMG
Trigger: ACCCATCTGTTGTGAGCAGCACACTGCAGCGATTGACCCAGGGCAGGCCTGGCTGCATGTTGGGCTCAGAGGAAGATGGTGCCTCTCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 90 bp GAGGCACCATCTTCCTCTGAGCCCAACATGCAGCCAGGCCTGCCCTaGGTCAATCGCTGCAGTGTGCTGCTCACAACAGATGGGTCACTG +
Preference number: 5 (lower is better)
Translates to: EAPSSSEPNMQPGLP*VNRCSVLLTTDGSL
Trigger: CAGTGACCCATCTGTTGTGAGCAGCACACTGCAGCGATTGACCCAGGGCAGGCCTGGCTGCATGTTGGGCTCAGAGGAAGATGGTGCCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 90 bp TGCTACAGCTACAGCTACCAAGAGCAGGCTGAGCCCATGGGCCAGTaGGGCACACCAGGCAGGCAGCAGTCGCTTCTGAAAACCTTCCAC +
Preference number: 5 (lower is better)
Translates to: CYSYSYQEQAEPMGQ*GTPGRQQSLLKTFH
Trigger: GTGGAAGGTTTTCAGAAGCGACTGCTGCCTGCCTGGTGTGCCCCACTGGCCCATGGGCTCAGCCTGCTCTTGGTAGCTGTAGCTGTAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGTGGGTGAGAGGCGGATaGAGGCACAGCCCTCTTCTT +
Preference number: 5 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKWVRGG*RHSPLL
Trigger: AAGAAGAGGGCTGTGCCTCAATCCGCCTCTCACCCA...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 90 bp CAGCCGCATCTGGGCAGGCTCTTCAAGCTTCTGGGTAGAAAACTCTaGTGCAGTGAGAAAGGCTTCCCGGCTAGGGCTCAGGCCAGGGAA +
Preference number: 5 (lower is better)
Translates to: QPHLGRLFKLLGRKL*CSEKGFPARAQARE
Trigger: TTCCCTGGCCTGAGCCCTAGCCGGGAAGCCTTTCTCACTGCAGCAGAGTTTTCTACCCAGAAGCTTGAAGAGCCTGCCCAGATGCGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TGGCCACCTAGGGGTAGAGCTGGGCGCAGCCCGCTGAACCTGAGGACTTGGGGGGTAGAAATCCTATTGTaGCTTAAGTCCAGCTCCACC +
Preference number: 5 (lower is better)
Translates to: WPPRGRAGRSPLNLRTWGVEILL*LKSSST
Trigger: GGTGGAGCTGGACTTAAGCAACAATAGGATTTCTAC...CCCCCAAGTCCTCAGGTTCAGCGGGCTGCGCCCAGCTCTACCCCTAGGTGGCCA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GCTGGGGTGGACCTTGTTATTAGGCCACAGGGACACCCTGTTGGGGCCTACAGTGTCAGAGGCTCCTCATaGAGCACTCGGGAACGCATG +
Preference number: 5 (lower is better)
Translates to: AGVDLVIRPQGHPVGAYSVRGSS*STRERM
Trigger: CATGCGTTCCCGAGTGCTCAATGAGGAGCCTCTGAC...ACTGTAGGCCCCAACAGGGTGTCCCTGTGGCCTAATAACAAGGTCCACCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGGAGCAGTTGTACTCATaGGGCTGGGACACTGAGTGC +
Preference number: 5 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGEQLYS*GWDTEC
Trigger: GCACTCAGTGTCCCAGCCCAATGAGTACAACTGCTC...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GGTGGGAGCACAACTGGGGATGACTTGGAGCCCCTGGATGAGCGGGAAGGCAGTACAGCGCAGCTTCATTaGCTGCAAGCACCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: GGSTTGDDLEPLDEREGSTAQLH*LQAPPS
Trigger: AGAAGGAGGTGCTTGCAGCAAATGAAGCTGCGCTGT...ACTGCCTTCCCGCTCATCCAGGGGCTCCAAGTCATCCCCAGTTGTGCTCCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGAGGCCGACAAGTATTaGGCAGGCAAGGAAGGGCTA +
Preference number: 5 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKEADKY*AGKEGL
Trigger: TAGCCCTTCCTTGCCTGCCAAATACTTGTCGGCCTC...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACTGTCCTGGAAAGCCTaGTCACCGGGGACTGTTCCC +
Preference number: 5 (lower is better)
Translates to: LLRSETSRSACCLAPDKGLSWKA*SPGTVP
Trigger: GGGAACAGTCCCCGGTGACAAGGCTTTCCAGGACAG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGACTATCCAGCTCCTGCTaGATGGCGCTCTGCAGGCGA +
Preference number: 5 (lower is better)
Translates to: LLRSETSRSACCLAPDKGLSSSC*MALCRR
Trigger: TCGCCTGCAGAGCGCCATCAAGCAGGAGCTGGATAG...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGATGTCTCAGAGCCATTTaGCACCACACTCTGCCAGCC +
Preference number: 5 (lower is better)
Translates to: STLALRGQCEAQAFPGKGCLRAI*HHTLPA
Trigger: GGCTGGCAGAGTGTGGTGCAAAATGGCTCTGAGACA...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGCCTTCAAAGCGGACTTaGTGGCGGAACTCCTTGACC +
Preference number: 5 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKPSKRT*WRNSLT
Trigger: GGTCAAGGAGTTCCGCCACAAAGTCCGCTTTGAAGG...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GTGTCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGTCCTCTGTGGCCTGGTaGAGTCGGTCAAACTGGACA +
Preference number: 5 (lower is better)
Translates to: VSTLALRGQCEAQAFPGKSSVAW*SRSNWT
Trigger: TGTCCAGTTTGACCGACTCAACCAGGCCACAGAGGA...CTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 90 bp CCAATGGATGCAGAGGTCCAGACAGGCCTCCACCAGACATTCCCATaGCAAAGTTCTCAGTATCCCACACAGGCCCTCCAGGCCGCAGCT +
Preference number: 5 (lower is better)
Translates to: PMDAEVQTGLHQTFP*QSSQYPTQALQAAA
Trigger: AGCTGCGGCCTGGAGGGCCTGTGTGGGATACTGAGAACTTTGTCATGGGAATGTCTGGTGGAGGCCTGTCTGGACCTCTGCATCCATTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 90 bp CCACATGACACTCACGCTGGGAGGGAAGCTGGCACCAATCCACCCTaGAACTGCTACAGCTACAGCTACCAAGAGCAGGCTGAGCCCATG +
Preference number: 5 (lower is better)
Translates to: PHDTHAGREAGTNPP*NCYSYSYQEQAEPM
Trigger: CATGGGCTCAGCCTGCTCTTGGTAGCTGTAGCTGTAGCAGTTTCAGGGTGGATTGGTGCCAGCTTCCCTCCCAGCGTGAGTGTCATGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGGAAAACAAGGCCACGGTGGCCCACGCTGCTCACTGTGTaGTTAACCTCCAAGGTGATT +
Preference number: 5 (lower is better)
Translates to: ICVLPGPRQGRKTRPRWPTLLTV*LTSKVI
Trigger: AATCACCTTGGAGGTTAACAACACAGTGAGCAGCGT...GGGCCACCGTGGCCTTGTTTTCCTCCCTTGTCTGGGGCCAGGCAGCACGCAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAAGGGTGAGACTCATGTaGACAGCAGCTGGATTAGGG +
Preference number: 5 (lower is better)
Translates to: STLALRGQCEAQAFPGKGRVRLM*TAAGLG
Trigger: CCCTAATCCAGCTGCTGTCAACATGAGTCTCACCCT...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATGGCCAAGACCCCTAGGGGATGTTCTTACGCATTaGGGCTCTCAGCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: ASVKLRHSQGREWPRPLGDVLTH*GSQLLL
Trigger: GAGCAGCAGCTGAGAGCCCAAATGCGTAAGAACATC...CCCTAGGGGTCTTGGCCATTCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp AAGGGTCTGGGCAGAATGCTTCCTGCAGTCGCACCTGCCGTAGCCGTGGAGGGCTTCGAGCTTCCTCCTTaGCCAAGAAGAGTGCAAAAC +
Preference number: 5 (lower is better)
Translates to: KGLGRMLPAVAPAVAVEGFELPP*PRRVQN
Trigger: GTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGAA...GCCCTCCACGGCTACGGCAGGTGCGACTGCAGGAAGCATTCTGCCCAGACCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228581.2
CDS TCA 90 bp GACAGTAGGTGTTGCTTCTACTTGCACCTCTGTCTCCAGCAGAGCTaGGCCAGCCCCCAAGGCCAGCACAACTGTCATGTGATAGCTCCC +
Preference number: 5 (lower is better)
Translates to: DSRCCFYLHLCLQQS*ASPQGQHNCHVIAP
Trigger: GGGAGCTATCACATGACAGTTGTGCTGGCCTTGGGGGCTGGCTCAGCTCTGCTGGAGACAGAGGTGCAAGTAGAAGCAACACCTACTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 90 bp TGCAGAGAGAAACTGCCAGCCGTGGAGAAGCGCACAGCAATGTACTaGCTGTCCTTACTCCCACCTGGCAAGGTCCAGCACCAAGTCACA +
Preference number: 5 (lower is better)
Translates to: CREKLPAVEKRTAMY*LSLLPPGKVQHQVT
Trigger: TGTGACTTGGTGCTGGACCTTGCCAGGTGGGAGTAAGGACAGCCAGTACATTGCTGTGCGCTTCTCCACGGCTGGCAGTTTCTCTCTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGCACCTGATGTTCCTTaGCCCAGCGTGGCAGCCACG +
Preference number: 5 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRAPDVP*PSVAAT
Trigger: CGTGGCTGCCACGCTGGGCAAAGGAACATCAGGTGC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTCGGGCCTCAGGGCTaGGCACAGCACGGAGGCCAC +
Preference number: 5 (lower is better)
Translates to: LYLTLSCLFGVGAESRLELGPQG*AQHGGH
Trigger: GTGGCCTCCGTGCTGTGCCAAGCCCTGAGGCCCGAG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAATCCCTAACTGCAGCTaGCAGCTGCAGTGTGTAGTT +
Preference number: 5 (lower is better)
Translates to: STLALRGQCEAQAFPGKGIPNCS*QLQCVV
Trigger: AACTACACACTGCAGCTGCAAGCTGCAGTTAGGGAT...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGCAGATGCAGGCCAGCTaGAGGGTTACTGTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGEQMQAS*RVTVVC
Trigger: GCAGACAACAGTAACCCTCAAGCTGGCCTGCATCTG...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGGAGGCCGACAAGTATTaGGCAGGCAAGGAAGGGCTA +
Preference number: 5 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGEEADKY*AGKEGL
Trigger: TAGCCCTTCCTTGCCTGCCAAATACTTGTCGGCCTC...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS TCA 90 bp GTGTCCTGGGTAGGAACCAGGTTGTTGGCCCCATCAGCCAGTACCTaGTGGATCAGGTCTTCATCTGAGGCCGACAAGTATTTGGCAGGC +
Preference number: 5 (lower is better)
Translates to: VSWVGTRLLAPSAST*WIRSSSEADKYLAG
Trigger: GCCTGCCAAATACTTGTCGGCCTCAGATGAAGACCTGATCCATCAGGTACTGGCTGATGGGGCCAACAACCTGGTTCCTACCCAGGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 90 bp AAGCCTTGTCACCGGGGACTGTTCCCAACTGAGGCCCATGCTGGCTaGTCTCTCCTCCCCCACTGTCTGCAGTATCAGAGTTTCTGTTTT +
Preference number: 5 (lower is better)
Translates to: KPCHRGLFPTEAHAG*SLLPHCLQYQSFCF
Trigger: AAAACAGAAACTCTGATACTGCAGACAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCTCAGTTGGGAACAGTCCCCGGTGACAAGGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTACTGTGCGGCTGGCATaGATGGTGAGGCCCCGCACA +
Preference number: 5 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSTVRLA*MVRPRT
Trigger: TGTGCGGGGCCTCACCATCAATGCCAGCCGCACAGT...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CTGCAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCGTAGGAACCAGGTTGTaGGCCCCATCAGCCAGTACC +
Preference number: 5 (lower is better)
Translates to: LQMSPQKQAGAITYILFPVGTRL*APSAST
Trigger: GGTACTGGCTGATGGGGCCAACAACCTGGTTCCTAC...GGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCCTGTCCTGGAAAGCCTaGTCACCGGGGACTGTTCCC +
Preference number: 5 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCLSWKA*SPGTVP
Trigger: GGGAACAGTCCCCGGTGACAAGGCTTTCCAGGACAG...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS TCA 90 bp ACACTGAGAACAGGGTGCCATTGGCCTCTTCTGTGCAATCTTGCTTaGGAAAATCCACCTCAGGAGGGCAGGCATCCTCGAAGGGAGCAC +
Preference number: 5 (lower is better)
Translates to: TLRTGCHWPLLCNLA*ENPPQEGRHPRREH
Trigger: GTGCTCCCTTCGAGGATGCCTGCCCTCCTGAGGTGGATTTTCTCAAGCAAGATTGCACAGAAGAGGCCAATGGCACCCTGTTCTCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 90 bp GAGCCTCCACGATGCCGTATGCCAAGTTCAAGGCTCTCGTTACTGTaGACAAAGGATGGGCACACAAGCTCCAGGACAGTAGGTGTTGCT +
Preference number: 5 (lower is better)
Translates to: EPPRCRMPSSRLSLL*TKDGHTSSRTVGVA
Trigger: AGCAACACCTACTGTCCTGGAGCTTGTGTGCCCATCCTTTGTGCACAGTAACGAGAGCCTTGAACTTGGCATACGGCATCGTGGAGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCACCCCCACAGGCAGAGTaGAGGGACAGTGAGATGCTG +
Preference number: 5 (lower is better)
Translates to: FDFVLSVWGWGRIQARAAPPQAE*RDSEML
Trigger: CAGCATCTCACTGTCCCTCAACTCTGCCTGTGGGGG...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TCCACCCTGGCTCTGAGAGGCCAGTGTGAAGCTCAGGCATTCCCAGGGAAGGGAACATTGAAGACAGTGTaGTGGAAAGTCAGAGACTGC +
Preference number: 5 (lower is better)
Translates to: STLALRGQCEAQAFPGKGTLKTV*WKVRDC
Trigger: GCAGTCTCTGACTTTCCACAACACTGTCTTCAATGT...TCCCTTCCCTGGGAATGCCTGAGCTTCACACTGGCCTCTCAGAGCCAGGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATCGTCGTATGGAGGCTaGAACTGGCGGAGTACCTGC +
Preference number: 5 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRSSYGG*NWRSTC
Trigger: GCAGGTACTCCGCCAGTTCAAGCCTCCATACGACGA...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp AGAACTGGCATGCAGCCGTTCTGCCTGGCCCAACCTAGAGGGCAGCAGAAGGTACCTTGTTCACATGGCTaGACAAAACCAATGCCAGTG +
Preference number: 5 (lower is better)
Translates to: RTGMQPFCLAQPRGQQKVPCSHG*TKPMPV
Trigger: CACTGGCATTGGTTTTGTCAAGCCATGTGAACAAGG...TACCTTCTGCTGCCCTCTAGGTTGGGCCAGGCAGAACGGCTGCATGCCAGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp TTGCTCAGATCTGAAACCAGCAGATCTGCGTGCTGCCTGGCCCCAGACAAGGGAGCCTGCTCATACTCATaGAGCACAGTAATGAGGGCT +
Preference number: 5 (lower is better)
Translates to: LLRSETSRSACCLAPDKGACSYS*STVMRA
Trigger: AGCCCTCATTACTGTGCTCAATGAGTATGAGCAGGC...TCCCTTGTCTGGGGCCAGGCAGCACGCAGATCTGCTGGTTTCAGATCTGAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp TTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCACTGCTGTCAAGCCAGTaGTGCAGCTGCAGGAAGCCC +
Preference number: 5 (lower is better)
Translates to: FDFVLSVWGWGRIQARAALLSSQ*CSCRKP
Trigger: GGGCTTCCTGCAGCTGCACAACTGGCTTGACAGCAG...TGCAGCTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCCGGAACTCCTTGACCTaGCTGAAGCCCATCCAGAGC +
Preference number: 5 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCRNSLT*LKPIQS
Trigger: GCTCTGGATGGGCTTCAGCAAGGTCAAGGAGTTCCG...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 90 bp ATGAGAGTTACACGAAGCATCAAAAGGTATGCAGACATTGGCTCCTaGACACCAGAGTTCCTCAGGCACACACTTGGGGGCCGGCTCAGT +
Preference number: 5 (lower is better)
Translates to: MRVTRSIKRYADIGS*TPEFLRHTLGGRLS
Trigger: ACTGAGCCGGCCCCCAAGTGTGTGCCTGAGGAACTCTGGTGTCCAGGAGCCAATGTCTGCATACCTTTTGATGCTTCGTGTAACTCTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000228745.2
CDS CCA 90 bp TGCAGACATGAGAGTTACACGAAGCATCAAAAGGTATGCAGACATTaGCTCCTGGACACCAGAGTTCCTCAGGCACACACTTGGGGGCCG +
Preference number: 5 (lower is better)
Translates to: CRHESYTKHQKVCRH*LLDTRVPQAHTWGP
Trigger: CGGCCCCCAAGTGTGTGCCTGAGGAACTCTGGTGTCCAGGAGCCAATGTCTGCATACCTTTTGATGCTTCGTGTAACTCTCATGTCTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000228745.2
CDS-3UTR CAA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCCGGCTCAGTCCTGTaGTCAGGCTCACTGCTGCCT +
Preference number: 5 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHAGSVL*SGSLLP
Trigger: AGGCAGCAGTGAGCCTGACAACAGGACTGAGCCGGC...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGCTGTCAGCGAGAGCTaGAAGATGGCAGCACTCTGG +
Preference number: 5 (lower is better)
Translates to: ISILEAGYSLGPILLCPPAVSES*KMAALW
Trigger: CCAGAGTGCTGCCATCTTCAAGCTCTCGCTGACAGC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCCCGGCCACCAGGACGTaGCTGCTCATGCCAATAGCC +
Preference number: 5 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTPATRT*LLMPIA
Trigger: GGCTATTGGCATGAGCAGCAACGTCCTGGTGGCCGG...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTGTCAGAGGCTCCTCATaGAGCACTCGGGAACGCATG +
Preference number: 5 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVVRGSS*STRERM
Trigger: CATGCGTTCCCGAGTGCTCAATGAGGAGCCTCTGAC...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCAACAGCGCAGCTTCATTaGCTGCAAGCACCTCCTTCT +
Preference number: 5 (lower is better)
Translates to: QMSPQKQAGAITYILFPPTAQLH*LQAPPS
Trigger: AGAAGGAGGTGCTTGCAGCAAATGAAGCTGCGCTGT...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCTGTGGGTGTGGGGTTTaGGTCCCCAGACACCTTACT +
Preference number: 5 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCCGCGV*VPRHLT
Trigger: AGTAAGGTGTCTGGGGACCAAAACCCCACACCCACA...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTGCTTGTGGCGGAACTCCTaGACCTTGCTGAAGCCCATC +
Preference number: 5 (lower is better)
Translates to: VRKAAIPVPKRTGMQPFCLWRNS*TLLKPI
Trigger: GATGGGCTTCAGCAAGGTCAAGGAGTTCCGCCACAA...GCAGAACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 90 bp AGGCTCTTTATCCAAAGCCAGGATGCTATAGGTGACCTCAAGGGCTaGGCCTCCACGATGCCGTATGCCAAGTTCAAGGCTCTCGTTACT +
Preference number: 5 (lower is better)
Translates to: RLFIQSQDAIGDLKG*ASTMPYAKFKALVT
Trigger: AGTAACGAGAGCCTTGAACTTGGCATACGGCATCGTGGAGGCTCAGCCCTTGAGGTCACCTATAGCATCCTGGCTTTGGATAAAGAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 90 bp GTTCTTACGCATTTGGGCTCTCAGCTGCTGCTCAACGTTGGGCTCTaGCACATCTGGGGCCTGCTCATACTCATTGAGCACAGTAATGAG +
Preference number: 5 (lower is better)
Translates to: VLTHLGSQLLLNVGL*HIWGLLILIEHSNE
Trigger: CTCATTACTGTGCTCAATGAGTATGAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGCTGAGAGCCCAAATGCGTAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp CTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGTGGGGAGCTCTTCTGTGCAATCTaGCTTGAGAAAATCCACCTC +
Preference number: 5 (lower is better)
Translates to: LGGWVLTWSNTAVSSCGELFCAI*LEKIHL
Trigger: GAGGTGGATTTTCTCAAGCAAGATTGCACAGAAGAG...CTCCCCACAGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGCAGCCGTTCTCCAGGACAAACACTaGCACATGCAGGCTCTGGGA +
Preference number: 5 (lower is better)
Translates to: TGKEGSNTCTQKNWHAAVLQDKH*HMQALG
Trigger: TCCCAGAGCCTGCATGTGCAAGTGTTTGTCCTGGAG...AACGGCTGCATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 90 bp CACCAGGCATATGACACACGTCAGGAGGACAATGTAGTTGATGCTTaGAGATGGTTCAGGAAAGATGAACTGGACATGGCTGGGAGGCAC +
Preference number: 5 (lower is better)
Translates to: HQAYDTRQEDNVVDA*RWFRKDELDMAGRH
Trigger: GTGCCTCCCAGCCATGTCCAGTTCATCTTTCCTGAACCATCTGCAAGCATCAACTACATTGTCCTCCTGACGTGTGTCATATGCCTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACGAACACAGGTCTGTGTaGCATTGCCCAGCAGGCCCC +
Preference number: 5 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNEHRSV*HCPAGP
Trigger: GGGGCCTGCTGGGCAATGCAACACAGACCTGTGTTC...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTGAGAACAGGGTGCCATaGGCCTCTTCTGTGCAATCT +
Preference number: 5 (lower is better)
Translates to: ISILEAGYSLGPILLCPPENRVP*ASSVQS
Trigger: AGATTGCACAGAAGAGGCCAATGGCACCCTGTTCTC...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGACTCTCAGGCTGAGGTaGGCCTGGCTGGCTCCATTT +
Preference number: 5 (lower is better)
Translates to: LYLTLSCLFGVGAESRLETLRLR*AWLAPF
Trigger: AAATGGAGCCAGCCAGGCCAACCTCAGCCTGAGAGT...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATTGGGTGAGAGGCGGATaGAGGCACAGCCCTCTTCTT +
Preference number: 5 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHWVRGG*RHSPLL
Trigger: AAGAAGAGGGCTGTGCCTCAATCCGCCTCTCACCCA...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAGCCTGCTCATACTCATaGAGCACAGTAATGAGGGCT +
Preference number: 5 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRACSYS*STVMRA
Trigger: AGCCCTCATTACTGTGCTCAATGAGTATGAGCAGGC...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp CTTTATTTGACTTTGTCTTGTCTGTTTGGGGTTGGGGCAGAATCCAGGCTAGAGCTGCTGGGGTGGACCTaGTTATTAGGCCACAGGGAC +
Preference number: 5 (lower is better)
Translates to: LYLTLSCLFGVGAESRLELLGWT*LLGHRD
Trigger: GTCCCTGTGGCCTAATAACAAGGTCCACCCCAGCAG...CTCTAGCCTGGATTCTGCCCCAACCCCAAACAGACAAGACAAAGTCAAATAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATAGGCTCCTGGTAACCTaGGAGACTAGGAAGTGCTGG +
Preference number: 5 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHRLLVT*ETRKCW
Trigger: CCAGCACTTCCTAGTCTCCAAGGTTACCAGGAGCCT...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CCCCATTGGTGGGCTTGTCCAGTAACTTCTTGGCATCTTTCATCCCACAGTAGTCCATGGACAGTCACATaGGAGGAGCCATCTCCAAAA +
Preference number: 5 (lower is better)
Translates to: PHWWACPVTSWHLSSHSSPWTVT*EEPSPK
Trigger: TTTTGGAGATGGCTCCTCCAATGTGACTGTCCATGG...ACTACTGTGGGATGAAAGATGCCAAGAAGTTACTGGACAAGCCCACCAATGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CAGATGAGCCCACAGAAGCAGGCAGGTGCCATCACATACATTCTCTTTCCCCCAAGGTCACCTGTGATATaGAGAATGCTGTCAGCAATG +
Preference number: 5 (lower is better)
Translates to: QMSPQKQAGAITYILFPPRSPVI*RMLSAM
Trigger: CATTGCTGACAGCATTCTCAATATCACAGGTGACCT...TGGGGGAAAGAGAATGTATGTGATGGCACCTGCCTGCTTCTGTGGGCTCATCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGATTCGAGCTTCCTCCTTaGCCAAGAAGAGTGCAAAAC +
Preference number: 5 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRFELPP*PRRVQN
Trigger: GTTTTGCACTCTTCTTGGCAAAGGAGGAAGCTCGAA...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTAGCCCAAGTCCGACATaGCTCCTGTGCTTGCAGCCA +
Preference number: 5 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGSPSPT*LLCLQP
Trigger: TGGCTGCAAGCACAGGAGCAATGTCGGACTTGGGCT...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATGATGTTCTTACGCATTaGGGCTCTCAGCTGCTGCTC +
Preference number: 5 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHDVLTH*GSQLLL
Trigger: GAGCAGCAGCTGAGAGCCCAAATGCGTAAGAACATC...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp ACAGACAGCAGTCAGACAGCTTCTTTATTTGACTTTGTCTTGTCTGTTTGGGGTGCCCAGCTGAGCCACTaGGTCGAAGCTAGTGAAGTG +
Preference number: 5 (lower is better)
Translates to: TDSSQTASLFDFVLSVWGAQLSH*VEASEV
Trigger: CACTTCACTAGCTTCGACCAAGTGGCTCAGCTGGGC...ACCCCAAACAGACAAGACAAAGTCAAATAAAGAAGCTGTCTGACTGCTGTCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACAAGGCTCTGGAGTTGTaGCTCCAGCTGGTAGACGTC +
Preference number: 5 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNKALEL*LQLVDV
Trigger: GACGTCTACCAGCTGGAGCAACAACTCCAGAGCCTT...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CATATGTGGACAGGTAAGGAAGGCAGCAATACCTGTACCCAAAAGAACTGGCATAATCTGAGGCATTGGTaGAAAGGTACAGGGCTTGGC +
Preference number: 5 (lower is better)
Translates to: HMWTGKEGSNTCTQKNWHNLRHW*KGTGLG
Trigger: GCCAAGCCCTGTACCTTTCAACCAATGCCTCAGATT...ATGCCAGTTCTTTTGGGTACAGGTATTGCTGCCTTCCTTACCTGTCCACATATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp GGCATCTTTCATCCCACAGTAGTCCTGCCCTTGCTCAGATCTGAAACCAGCAGAAATGTCCATGTAATGTaGTCACCTGACTCCACAGAA +
Preference number: 5 (lower is better)
Translates to: GIFHPTVVLPLLRSETSRNVHVM*SPDSTE
Trigger: TTCTGTGGAGTCAGGTGACAACATTACATGGACATT...TCTGCTGGTTTCAGATCTGAGCAAGGGCAGGACTACTGTGGGATGAAAGATGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp ATTAGCATCTTGGAGGCTGGGTACTCACTTGGTCCAATACTGCTGTGTCCTCCTAGGTCACCTGTGATATaGAGAATGCTGTCAGCAATG +
Preference number: 5 (lower is better)
Translates to: ISILEAGYSLGPILLCPPRSPVI*RMLSAM
Trigger: CATTGCTGACAGCATTCTCAATATCACAGGTGACCT...AGGAGGACACAGCAGTATTGGACCAAGTGAGTACCCAGCCTCCAAGATGCTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS-3UTR CAA 90 bp AAGCAGATGGTAGCTAGAGGGCAAGTATGCTGCAGAAACAAGAGAGGTAATAACTTGAAGGCTCTGGAGTaGTTGCTCCAGCTGGTAGAC +
Preference number: 5 (lower is better)
Translates to: KQMVARGQVCCRNKRGNNLKALE*LLQLVD
Trigger: GTCTACCAGCTGGAGCAACAACTCCAGAGCCTTCAA...GTTATTACCTCTCTTGTTTCTGCAGCATACTTGCCCTCTAGCTACCATCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS-3UTR CAA 90 bp CTTTTTAAAGTGCAGAAGCCCCATATGTGGACAGGTAAGGAAGGCAGCAATACCCTCTGGTATATTACATaGAAGACAGTGTTGTGGAAA +
Preference number: 5 (lower is better)
Translates to: LFKVQKPHMWTGKEGSNTLWYIT*KTVLWK
Trigger: TTTCCACAACACTGTCTTCAATGTAATATACCAGAG...GGTATTGCTGCCTTCCTTACCTGTCCACATATGGGGCTTCTGCACTTTAAAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp TGTGGGACAGGTCTAGCGCGGTGGCGTCAGCCGGGATaGGCAGACTCGGCCCTAGCGTCTGCAGCCAGCGGC +
Preference number: 6 (lower is better)
Translates to: CGTGLARWRQPG*ADSALASAASG
Trigger: GCCGCTGGCTGCAGACGCTAGGGCCGAGTCTGCGCATCCCGGCTGACGCCACCGCGCTAGACCTGTCCCACA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp ACTTGGGGGCCGGCTCAGTCCTGTTGTCAGGCTCACTaGTGCCTTCTGGGACCGCTGCTGCTCCTCCTGAGG +
Preference number: 6 (lower is better)
Translates to: TWGPAQSCCQAH*CLLGPLLLLLR
Trigger: CCTCAGGAGGAGCAGCAGCGGTCCCAGAAGGCAGCAGTGAGCCTGACAACAGGACTGAGCCGGCCCCCAAGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp CAAGGCAGCTCCAGCCCAAGTCCGACATTGCTCCTGTaGTTGCAGCCAGGGTGCCTTCTCTGCCACCAGGCG +
Preference number: 6 (lower is better)
Translates to: QGSSSPSPTLLL*LQPGCLLCHQA
Trigger: CGCCTGGTGGCAGAGAAGGCACCCTGGCTGCAAGCACAGGAGCAATGTCGGACTTGGGCTGGAGCTGCCTTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp CACAGGTCGCAGCGGGCCCTGGACAGTTTCCTGCTGTaGCAATGGATGCAGAGGTCCAGACAGGCCTCCACC +
Preference number: 6 (lower is better)
Translates to: HRSQRALDSFLL*QWMQRSRQAST
Trigger: GGTGGAGGCCTGTCTGGACCTCTGCATCCATTGGCACAGCAGGAAACTGTCCAGGGCCCGCTGCGACCTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp TCCTCAGGCACACACTTGGGGGCCGGCTCAGTCCTGTaGTCAGGCTCACTGCTGCCTTCTGGGACCGCTGCT +
Preference number: 6 (lower is better)
Translates to: SSGTHLGAGSVL*SGSLLPSGTAA
Trigger: AGCAGCGGTCCCAGAAGGCAGCAGTGAGCCTGACAACAGGACTGAGCCGGCCCCCAAGTGTGTGCCTGAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 90 bp CACCAGAGTTCCTCAGGCACACACTTGGGGGCCGGCTCAGTCCTGTaGTCAGGCTCACTGCTGCCTTCTGGGACCGCTGCTGCTCCTCCT +
Preference number: 6 (lower is better)
Translates to: HQSSSGTHLGAGSVL*SGSLLPSGTAAAPP
Trigger: AGGAGGAGCAGCAGCGGTCCCAGAAGGCAGCAGTGAGCCTGACAACAGGACTGAGCCGGCCCCCAAGTGTGTGCCTGAGGAACTCTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp TCCTGGAAAGCCTTGTCACCGGGGACTGTTCCCAACTaGGGCCCATGCTGGCTGGTCTCTCCTCCCCCACTG +
Preference number: 6 (lower is better)
Translates to: SWKALSPGTVPN*GPCWLVSPPPL
Trigger: CAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCTCAGTTGGGAACAGTCCCCGGTGACAAGGCTTTCCAGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 72 bp ACCTCCACAGGTCGCAGCGGGCCCTGGACAGTTTCCTaGTGTGCCAATGGATGCAGAGGTCCAGACAGGCCT +
Preference number: 6 (lower is better)
Translates to: TSTGRSGPWTVS*CANGCRGPDRP
Trigger: AGGCCTGTCTGGACCTCTGCATCCATTGGCACAGCAGGAAACTGTCCAGGGCCCGCTGCGACCTGTGGAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp CACTCTGGCTGCCGTCTCCCAGTTCCCATAGGTAGGTaGCAGGGCTCCCACTGCCCATGGCTGACAACAGGT +
Preference number: 6 (lower is better)
Translates to: HSGCRLPVPIGR*QGSHCPWLTTG
Trigger: ACCTGTTGTCAGCCATGGGCAGTGGGAGCCCTGCCACCTACCTATGGGAACTGGGAGACGGCAGCCAGAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp CATAGGCAACTCGGGAACCTCGCTGCACCCGGGCTGTaGAGTTCTTCTCAGTGCCTGTGGCCATGCCTGGCT +
Preference number: 6 (lower is better)
Translates to: HRQLGNLAAPGL*SSSQCLWPCLA
Trigger: AGCCAGGCATGGCCACAGGCACTGAGAAGAACTTCACAGCCCGGGTGCAGCGAGGTTCCCGAGTTGCCTATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp ACCATAGCCAAGGCAGCTCCAGCCCAAGTCCGACATTaGTCCTGTGCTTGCAGCCAGGGTGCCTTCTCTGCC +
Preference number: 6 (lower is better)
Translates to: TIAKAAPAQVRH*SCACSQGAFSA
Trigger: GGCAGAGAAGGCACCCTGGCTGCAAGCACAGGAGCAATGTCGGACTTGGGCTGGAGCTGCCTTGGCTATGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp TTCAGGAGCCCAGGCAGCACACTGGCAGTCAGGCTGTaGAGCCAGGGTACGAGGTCTGCAGGATTTCCACTG +
Preference number: 6 (lower is better)
Translates to: FRSPGSTLAVRL*SQGTRSAGFPL
Trigger: CAGTGGAAATCCTGCAGACCTCGTACCCTGGCTGCACAGCCTGACTGCCAGTGTGCTGCCTGGGCTCCTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp GAGGTTGGCCGGCCAGTGGAATGGGCCCCCTGCACGTaGTTGCCTCAGACTGTACCACATGCACCTGATGTT +
Preference number: 6 (lower is better)
Translates to: EVGRPVEWAPCT*LPQTVPHAPDV
Trigger: AACATCAGGTGCATGTGGTACAGTCTGAGGCAACCACGTGCAGGGGGCCCATTCCACTGGCCGGCCAACCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp TCGCAGCGGGCCCTGGACAGTTTCCTGCTGTGCCAATaGATGCAGAGGTCCAGACAGGCCTCCACCAGACAT +
Preference number: 6 (lower is better)
Translates to: SQRALDSFLLCQ*MQRSRQASTRH
Trigger: ATGTCTGGTGGAGGCCTGTCTGGACCTCTGCATCCATTGGCACAGCAGGAAACTGTCCAGGGCCCGCTGCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp GGGAACACCATGACCTCCACAGGTCGCAGCGGGCCCTaGACAGTTTCCTGCTGTGCCAATGGATGCAGAGGT +
Preference number: 6 (lower is better)
Translates to: GNTMTSTGRSGP*TVSCCANGCRG
Trigger: ACCTCTGCATCCATTGGCACAGCAGGAAACTGTCCAGGGCCCGCTGCGACCTGTGGAGGTCATGGTGTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp CACCGGGGACTGTTCCCAACTGAGGCCCATGCTGGCTaGTCTCTCCTCCCCCACTGTCTGCAGTATCAGAGT +
Preference number: 6 (lower is better)
Translates to: HRGLFPTEAHAG*SLLPHCLQYQS
Trigger: ACTCTGATACTGCAGACAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCTCAGTTGGGAACAGTCCCCGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CAA 72 bp GTTGGCCGGCCAGTGGAATGGGCCCCCTGCACGTGGTaGCCTCAGACTGTACCACATGCACCTGATGTTCCT +
Preference number: 6 (lower is better)
Translates to: VGRPVEWAPCTW*PQTVPHAPDVP
Trigger: AGGAACATCAGGTGCATGTGGTACAGTCTGAGGCAACCACGTGCAGGGGGCCCATTCCACTGGCCGGCCAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp CACCATAGCCAAGGCAGCTCCAGCCCAAGTCCGACATaGCTCCTGTGCTTGCAGCCAGGGTGCCTTCTCTGC +
Preference number: 6 (lower is better)
Translates to: HHSQGSSSPSPT*LLCLQPGCLLC
Trigger: GCAGAGAAGGCACCCTGGCTGCAAGCACAGGAGCAATGTCGGACTTGGGCTGGAGCTGCCTTGGCTATGGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp GCCAGTGGGGCACACCAGGCAGGCAGCAGTCGCTTCTaGAAACCTTCCACCAGTCCTGTCCTGGAAAGCCTT +
Preference number: 6 (lower is better)
Translates to: ASGAHQAGSSRF*KPSTSPVLESL
Trigger: AAGGCTTTCCAGGACAGGACTGGTGGAAGGTTTTCAGAAGCGACTGCTGCCTGCCTGGTGTGCCCCACTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp ATGCAGGCTCTGGGACAAGTGGCCAGCAGGGTTGGCTaGTTCTACTGTCACTGTGAAGTTCTGGGCCCGCAG +
Preference number: 6 (lower is better)
Translates to: MQALGQVASRVG*FYCHCEVLGPQ
Trigger: CTGCGGGCCCAGAACTTCACAGTGACAGTAGAAGCAGCCAACCCTGCTGGCCACTTGTCCCAGAGCCTGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp ATTCCTCACCACAGGCATTGTCCAATAAGGGGATACTaGGGAGAGGTTGGCCGGCCAGTGGAATGGGCCCCC +
Preference number: 6 (lower is better)
Translates to: IPHHRHCPIRGY*GEVGRPVEWAP
Trigger: GGGGGCCCATTCCACTGGCCGGCCAACCTCTCCTCAGTATCCCCTTATTGGACAATGCCTGTGGTGAGGAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp GTCCAGCACCAAGTCACATTGGTACCTTCAGCCAGCTaGCCCCAGAAGGGTAGAGTGGAGCCAGCTGCCACA +
Preference number: 6 (lower is better)
Translates to: VQHQVTLVPSAS*PQKGRVEPAAT
Trigger: TGTGGCAGCTGGCTCCACTCTACCCTTCTGGGGTCAGCTGGCTGAAGGTACCAATGTGACTTGGTGCTGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp AGTAGAGGGCTTCCAGCAGGACCTGGGATGGTAGCATaGTCAGCTGGCAGGCACAAGACTGGTAGCCCCTCT +
Preference number: 6 (lower is better)
Translates to: SRGLPAGPGMVA*SAGRHKTGSPS
Trigger: AGAGGGGCTACCAGTCTTGTGCCTGCCAGCTGATCATGCTACCATCCCAGGTCCTGCTGGAAGCCCTCTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227058.2
CDS GCA 72 bp TGCGAGCGGCCCAACACCCTTGCTTGTAGCCTCTGCTaGAGTTGTGGCAGTGACCCTCCAAGTACACATAGG +
Preference number: 6 (lower is better)
Translates to: CERPNTLACSLC*SCGSDPPSTHR
Trigger: CCTATGTGTACTTGGAGGGTCACTGCCACAACTGCAGCAGAGGCTACAAGCAAGGGTGTTGGGCCGCTCGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 72 bp AGTGAGTGTGAAGATGTAGCCCTCCCCATCACGCAGTaGACCTGGCCGCACTACCAGATTCATGCCGGTGCT +
Preference number: 6 (lower is better)
Translates to: SECEDVALPITQ*TWPHYQIHAGA
Trigger: AGCACCGGCATGAATCTGGTAGTGCGGCCAGGTGCACTGCGTGATGGGGAGGGCTACATCTTCACACTCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp CCAGGGAAGATCTCTGTGTCCAAGGGGCAGAGTGGGTaGACCACTTGGGCAGGCTCTTTATCCAAAGCCAGG +
Preference number: 6 (lower is better)
Translates to: PGKISVSKGQSG*TTWAGSLSKAR
Trigger: CCTGGCTTTGGATAAAGAGCCTGCCCAAGTGGTCCACCCACTCTGCCCCTTGGACACAGAGATCTTCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp AAACTGCCAGCCGTGGAGAAGCGCACAGCAATGTACTaGCTGTCCTTACTCCCACCTGGCAAGGTCCAGCAC +
Preference number: 6 (lower is better)
Translates to: KLPAVEKRTAMY*LSLLPPGKVQH
Trigger: GTGCTGGACCTTGCCAGGTGGGAGTAAGGACAGCCAGTACATTGCTGTGCGCTTCTCCACGGCTGGCAGTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp TGCACATGCAGGCTCTGGGACAAGTGGCCAGCAGGGTaGGCTGCTTCTACTGTCACTGTGAAGTTCTGGGCC +
Preference number: 6 (lower is better)
Translates to: CTCRLWDKWPAG*AASTVTVKFWA
Trigger: GGCCCAGAACTTCACAGTGACAGTAGAAGCAGCCAACCCTGCTGGCCACTTGTCCCAGAGCCTGCATGTGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 90 bp CTTCCAGATGGACAGGCAGGTTGGTCATCCAATCTGAGGCATTGGTaGAAAGGTACAGGGCTTGGCCAGGACAGCTGGAAGCCAGGGGAC +
Preference number: 6 (lower is better)
Translates to: LPDGQAGWSSNLRHW*KGTGLGQDSWKPGD
Trigger: GTCCCCTGGCTTCCAGCTGTCCTGGCCAAGCCCTGTACCTTTCAACCAATGCCTCAGATTGGATGACCAACCTGCCTGTCCATCTGGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp TGTTGCTTCTACTTGCACCTCTGTCTCCAGCAGAGCTaGGCCAGCCCCCAAGGCCAGCACAACTGTCATGTG +
Preference number: 6 (lower is better)
Translates to: CCFYLHLCLQQS*ASPQGQHNCHV
Trigger: CACATGACAGTTGTGCTGGCCTTGGGGGCTGGCTCAGCTCTGCTGGAGACAGAGGTGCAAGTAGAAGCAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp GCAGAGGTCCAGACAGGCCTCCACCAGACATTCCCATaGCAAAGTTCTCAGTATCCCACACAGGCCCTCCAG +
Preference number: 6 (lower is better)
Translates to: AEVQTGLHQTFP*QSSQYPTQALQ
Trigger: CTGGAGGGCCTGTGTGGGATACTGAGAACTTTGTCATGGGAATGTCTGGTGGAGGCCTGTCTGGACCTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp ACTCACGCTGGGAGGGAAGCTGGCACCAATCCACCCTaGAACTGCTACAGCTACAGCTACCAAGAGCAGGCT +
Preference number: 6 (lower is better)
Translates to: THAGREAGTNPP*NCYSYSYQEQA
Trigger: AGCCTGCTCTTGGTAGCTGTAGCTGTAGCAGTTTCAGGGTGGATTGGTGCCAGCTTCCCTCCCAGCGTGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp CTGGGCAGGCTCTTCAAGCTTCTGGGTAGAAAACTCTaGTGCAGTGAGAAAGGCTTCCCGGCTAGGGCTCAG +
Preference number: 6 (lower is better)
Translates to: LGRLFKLLGRKL*CSEKGFPARAQ
Trigger: CTGAGCCCTAGCCGGGAAGCCTTTCTCACTGCAGCAGAGTTTTCTACCCAGAAGCTTGAAGAGCCTGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp GACTCCACAGAAGCACTGACTACCATGGGGGCTCCCTaGTCCACAGATGGGCTCAAATACACAGTCAGGCCA +
Preference number: 6 (lower is better)
Translates to: DSTEALTTMGAP*STDGLKYTVRP
Trigger: TGGCCTGACTGTGTATTTGAGCCCATCTGTGGAGCAGGGAGCCCCCATGGTAGTCAGTGCTTCTGTGGAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp AAGTGCGAGCGGCCCAACACCCTTGCTTGTAGCCTCTaGTGCAGTTGTGGCAGTGACCCTCCAAGTACACAT +
Preference number: 6 (lower is better)
Translates to: KCERPNTLACSL*CSCGSDPPSTH
Trigger: ATGTGTACTTGGAGGGTCACTGCCACAACTGCAGCAGAGGCTACAAGCAAGGGTGTTGGGCCGCTCGCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp TGGTACCTTCAGCCAGCTGACCCCAGAAGGGTAGAGTaGAGCCAGCTGCCACAAAGATGCTATCTGGCTCAC +
Preference number: 6 (lower is better)
Translates to: WYLQPADPRRVE*SQLPQRCYLAH
Trigger: GTGAGCCAGATAGCATCTTTGTGGCAGCTGGCTCCACTCTACCCTTCTGGGGTCAGCTGGCTGAAGGTACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp CACACGGGGCACACGCTCACTTACAGGGGTTACAGCTaGGCTCTCTACCAGAGTGTCATCTTCATCAGGGTG +
Preference number: 6 (lower is better)
Translates to: HTGHTLTYRGYS*ALYQSVIFIRV
Trigger: CACCCTGATGAAGATGACACTCTGGTAGAGAGCCCAGCTGTAACCCCTGTAAGTGAGCGTGTGCCCCGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227058.2
CDS CAA 72 bp GCCACCAGGACGTTGCTGCTCATGCCAATAGCCACGTaGGGAAGAACAGTGCGCACACTTACTGTCACCTGC +
Preference number: 6 (lower is better)
Translates to: ATRTLLLMPIAT*GRTVRTLTVTC
Trigger: GCAGGTGACAGTAAGTGTGCGCACTGTTCTTCCCAACGTGGCTATTGGCATGAGCAGCAACGTCCTGGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 90 bp CAGCACCAGAGTCTTATTGCTGAAAGTGCGAGCGGCCCAACACCCTaGCTTGTAGCCTCTGCTGCAGTTGTGGCAGTGACCCTCCAAGTA +
Preference number: 6 (lower is better)
Translates to: QHQSLIAESASGPTP*LVASAAVVAVTLQV
Trigger: TACTTGGAGGGTCACTGCCACAACTGCAGCAGAGGCTACAAGCAAGGGTGTTGGGCCGCTCGCACTTTCAGCAATAAGACTCTGGTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS TCA 72 bp TTTGCGCCACAATCTCCACTGTGTGATCCCCCTCCTTaGGCCTGGGCAACATCAACACTGAGAACAGGGTGC +
Preference number: 6 (lower is better)
Translates to: FAPQSPLCDPPP*AWATSTLRTGC
Trigger: GCACCCTGTTCTCAGTGTTGATGTTGCCCAGGCTCAAGGAGGGGGATCACACAGTGGAGATTGTGGCGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp TGGCTGGCTCCATTTTGCGCCACAATCTCCACTGTGTaGTCCCCCTCCTTGAGCCTGGGCAACATCAACACT +
Preference number: 6 (lower is better)
Translates to: WLAPFCATISTV*SPSLSLGNINT
Trigger: AGTGTTGATGTTGCCCAGGCTCAAGGAGGGGGATCACACAGTGGAGATTGTGGCGCAAAATGGAGCCAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp CATTTGGGCTCTCAGCTGCTGCTCAACGTTGGGCTCTaGCACATCTGGGGCCTGCTCATACTCATTGAGCAC +
Preference number: 6 (lower is better)
Translates to: HLGSQLLLNVGL*HIWGLLILIEH
Trigger: GTGCTCAATGAGTATGAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGCTGAGAGCCCAAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS TCA 72 bp GTCTGGGGCTGTACAATGGTAGAACCCACAGGATTGTaGGAGCTCTGGGCAGCCTGGTCTGAGTTGTTTGGC +
Preference number: 6 (lower is better)
Translates to: VWGCTMVEPTGL*ELWAAWSELFG
Trigger: GCCAAACAACTCAGACCAGGCTGCCCAGAGCTCTCACAATCCTGTGGGTTCTACCATTGTACAGCCCCAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 72 bp ACCAACCTGAAGTCGGAAAGTAAGAGCAGAGCCAGCTaGCAGCAGGATTTCAAAGTGGACTGGCTGCCCAGG +
Preference number: 6 (lower is better)
Translates to: TNLKSESKSRAS*QQDFKVDWLPR
Trigger: CCTGGGCAGCCAGTCCACTTTGAAATCCTGCTGGCAGCTGGCTCTGCTCTTACTTTCCGACTTCAGGTTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp ATTGCCAGGGAAGATCTCTGTGTCCAAGGGGCAGAGTaGGTGGACCACTTGGGCAGGCTCTTTATCCAAAGC +
Preference number: 6 (lower is better)
Translates to: IAREDLCVQGAE*VDHLGRLFIQS
Trigger: GCTTTGGATAAAGAGCCTGCCCAAGTGGTCCACCCACTCTGCCCCTTGGACACAGAGATCTTCCCTGGCAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp TGGGGACTCGCCCACTTCGGATCAGTACTGTCTGGTTaGTGGCTTCTTCCTTCCGACCTGCTTTCCACACTA +
Preference number: 6 (lower is better)
Translates to: WGLAHFGSVLSG*WLLPSDLLSTL
Trigger: TAGTGTGGAAAGCAGGTCGGAAGGAAGAAGCCACCAACCAGACAGTACTGATCCGAAGTGGGCGAGTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp AGGCTAGTAAGCAGGTCTGTTTCTAGGAGGGTGTCCTaGGTAGGAACCAGGTTGTTGGCCCCATCAGCCAGT +
Preference number: 6 (lower is better)
Translates to: RLVSRSVSRRVS*VGTRLLAPSAS
Trigger: ACTGGCTGATGGGGCCAACAACCTGGTTCCTACCCAGGACACCCTCCTAGAAACAGACCTGCTTACTAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp CTACCAGAGTGTCATCTTCATCAGGGTGAAGCCGCTTaGCCACAAGGGAGAAGTAGAGGGCTTCCAGCAGGA +
Preference number: 6 (lower is better)
Translates to: LPECHLHQGEAA*PQGRSRGLPAG
Trigger: TCCTGCTGGAAGCCCTCTACTTCTCCCTTGTGGCCAAGCGGCTTCACCCTGATGAAGATGACACTCTGGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035565.5
ENSMUST00000227058.2
ENSMUST00000227107.2
CDS CAA 72 bp GGACAGGCAGGTTGGTCATCCAATCTGAGGCATTGGTaGAAAGGTACAGGGCTTGGCCAGGACAGCTGGAAG +
Preference number: 6 (lower is better)
Translates to: GQAGWSSNLRHW*KGTGLGQDSWK
Trigger: CTTCCAGCTGTCCTGGCCAAGCCCTGTACCTTTCAACCAATGCCTCAGATTGGATGACCAACCTGCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp ACAGGGTGCCATTGGCCTCTTCTGTGCAATCTTGCTTaGGAAAATCCACCTCAGGAGGGCAGGCATCCTCGA +
Preference number: 6 (lower is better)
Translates to: TGCHWPLLCNLA*ENPPQEGRHPR
Trigger: TCGAGGATGCCTGCCCTCCTGAGGTGGATTTTCTCAAGCAAGATTGCACAGAAGAGGCCAATGGCACCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp CCCATCAGCCAGTACCTGATGGATCAGGTCTTCATCTaGGGCCGACAAGTATTTGGCAGGCAAGGAAGGGCT +
Preference number: 6 (lower is better)
Translates to: PISQYLMDQVFI*GRQVFGRQGRA
Trigger: AGCCCTTCCTTGCCTGCCAAATACTTGTCGGCCTCAGATGAAGACCTGATCCATCAGGTACTGGCTGATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 72 bp AGGCCCATGCTGGCTGGTCTCTCCTCCCCCACTGTCTaGAGTATCAGAGTTTCTGTTTTCTCTCCAGGAACA +
Preference number: 6 (lower is better)
Translates to: RPMLAGLSSPTV*SIRVSVFSPGT
Trigger: TGTTCCTGGAGAGAAAACAGAAACTCTGATACTGCAGACAGTGGGGGAGGAGAGACCAGCCAGCATGGGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp ACACGAAGCATCAAAAGGTATGCAGACATTGGCTCCTaGACACCAGAGTTCCTCAGGCACACACTTGGGGGC +
Preference number: 6 (lower is better)
Translates to: TRSIKRYADIGS*TPEFLRHTLGG
Trigger: GCCCCCAAGTGTGTGCCTGAGGAACTCTGGTGTCCAGGAGCCAATGTCTGCATACCTTTTGATGCTTCGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000228745.2
CDS CCA 72 bp TCTTACGCATTTGGGCTCTCAGCTGCTGCTCAACGTTaGGCTCTGACACATCTGGGGCCTGCTCATACTCAT +
Preference number: 6 (lower is better)
Translates to: SYAFGLSAAAQR*ALTHLGPAHTH
Trigger: ATGAGTATGAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGCTGAGAGCCCAAATGCGTAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CAA 72 bp GATCTCTGTGTCCAAGGGGCAGAGTGGGTGGACCACTaGGGCAGGCTCTTTATCCAAAGCCAGGATGCTATA +
Preference number: 6 (lower is better)
Translates to: DLCVQGAEWVDH*GRLFIQSQDAI
Trigger: TATAGCATCCTGGCTTTGGATAAAGAGCCTGCCCAAGTGGTCCACCCACTCTGCCCCTTGGACACAGAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp AGATGGACAGGCAGGTTGGTCATCCAATCTGAGGCATaGGTTGAAAGGTACAGGGCTTGGCCAGGACAGCTG +
Preference number: 6 (lower is better)
Translates to: RWTGRLVIQSEA*VERYRAWPGQL
Trigger: CAGCTGTCCTGGCCAAGCCCTGTACCTTTCAACCAATGCCTCAGATTGGATGACCAACCTGCCTGTCCATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp GGGCCAGCCCAAGCTTCTTCCAGATGGACAGGCAGGTaGGTCATCCAATCTGAGGCATTGGTTGAAAGGTAC +
Preference number: 6 (lower is better)
Translates to: GPAQASSRWTGR*VIQSEALVERY
Trigger: GTACCTTTCAACCAATGCCTCAGATTGGATGACCAACCTGCCTGTCCATCTGGAAGAAGCTTGGGCTGGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp ACCAGGCAGTACCATTTGAGCCATACGTCCTGGCCGTaGGCAGCTGGCAGTACGATATATCTCCCACCGATA +
Preference number: 6 (lower is better)
Translates to: TRQYHLSHTSWP*AAGSTIYLPPI
Trigger: TATCGGTGGGAGATATATCGTACTGCCAGCTGCCAACGGCCAGGACGTATGGCTCAAATGGTACTGCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp TTCTTACGCATTTGGGCTCTCAGCTGCTGCTCAACGTaGGGCTCTGACACATCTGGGGCCTGCTCATACTCA +
Preference number: 6 (lower is better)
Translates to: FLRIWALSCCST*GSDTSGACSYS
Trigger: TGAGTATGAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCAGCTGAGAGCCCAAATGCGTAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS TCA 72 bp GTAGGAACCAGGTTGTTGGCCCCATCAGCCAGTACCTaGTGGATCAGGTCTTCATCTGAGGCCGACAAGTAT +
Preference number: 6 (lower is better)
Translates to: VGTRLLAPSAST*WIRSSSEADKY
Trigger: ATACTTGTCGGCCTCAGATGAAGACCTGATCCATCAGGTACTGGCTGATGGGGCCAACAACCTGGTTCCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 72 bp AGACATAACTATGTGGTGCTGAACACAGGTCTGTGTTaGATTGCCCAGCAGGCCCCAACCGCACACAATGCT +
Preference number: 6 (lower is better)
Translates to: RHNYVVLNTGLC*IAQQAPTAHNA
Trigger: AGCATTGTGTGCGGTTGGGGCCTGCTGGGCAATGCAACACAGACCTGTGTTCAGCACCACATAGTTATGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp GCCATGCAACTCCTGGAAGACACGGATGTCTGCATGTaGTGTCACGCTGCTCACTGTGTTGTTAACCTCCAA +
Preference number: 6 (lower is better)
Translates to: AMQLLEDTDVCM*CHAAHCVVNLQ
Trigger: TTGGAGGTTAACAACACAGTGAGCAGCGTGACAGCACATGCAGACATCCGTGTCTTCCAGGAGTTGCATGGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp AGTCAGGCCATGCAACTCCTGGAAGACACGGATGTCTaGATGTGCTGTCACGCTGCTCACTGTGTTGTTAAC +
Preference number: 6 (lower is better)
Translates to: SQAMQLLEDTDV*MCCHAAHCVVN
Trigger: GTTAACAACACAGTGAGCAGCGTGACAGCACATGCAGACATCCGTGTCTTCCAGGAGTTGCATGGCCTGACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp GCCAAGTTCAAGGCTCTCGTTACTGTGCACAAAGGATaGGCACACAAGCTCCAGGACAGTAGGTGTTGCTTC +
Preference number: 6 (lower is better)
Translates to: AKFKALVTVHKG*AHKLQDSRCCF
Trigger: GAAGCAACACCTACTGTCCTGGAGCTTGTGTGCCCATCCTTTGTGCACAGTAACGAGAGCCTTGAACTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp GGGGCTGGAATCCAGGAGGCAGGACAGCCCCATAGGTaGAAAGACTACCCTTATAGATGCAGAAATTCTCAC +
Preference number: 6 (lower is better)
Translates to: GAGIQEAGQPHR*KDYPYRCRNSH
Trigger: GTGAGAATTTCTGCATCTATAAGGGTAGTCTTTCCACCTATGGGGCTGTCCTGCCTCCTGGATTCCAGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CCA 72 bp ATGCTTGCAGATGGTTCAGGAAAGATGAACTGGACATaGCTGGGAGGCACAAAAAGGCTGGCACCGAAGGCA +
Preference number: 6 (lower is better)
Translates to: MLADGSGKMNWT*LGGTKRLAPKA
Trigger: TGCCTTCGGTGCCAGCCTTTTTGTGCCTCCCAGCCATGTCCAGTTCATCTTTCCTGAACCATCTGCAAGCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CAA 90 bp CCTGTGAATACTGTGCCATCTCCCATGTCAAATGTCCATGTAATGTaGTCACCTGACTCCACAGAAGCACTGACTACCATGGGGGCTCCC +
Preference number: 6 (lower is better)
Translates to: PVNTVPSPMSNVHVM*SPDSTEALTTMGAP
Trigger: GGGAGCCCCCATGGTAGTCAGTGCTTCTGTGGAGTCAGGTGACAACATTACATGGACATTTGACATGGGAGATGGCACAGTATTCACAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp TGCTGCTCAACGTTGGGCTCTGACACATCTGGGGCCTaGTCATACTCATTGAGCACAGTAATGAGGGCTAAA +
Preference number: 6 (lower is better)
Translates to: CCSTLGSDTSGA*SYSLSTVMRAK
Trigger: TTTAGCCCTCATTACTGTGCTCAATGAGTATGAGCAGGCCCCAGATGTGTCAGAGCCCAACGTTGAGCAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS TCA 72 bp ATCTCCCATGTCAAATGTCCATGTAATGTTGTCACCTaGCTCCACAGAAGCACTGACTACCATGGGGGCTCC +
Preference number: 6 (lower is better)
Translates to: ISHVKCPCNVVT*LHRSTDYHGGS
Trigger: GGAGCCCCCATGGTAGTCAGTGCTTCTGTGGAGTCAGGTGACAACATTACATGGACATTTGACATGGGAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS TCA 72 bp GGCCCTAAGATGGACATAGTAGGTGCTAGCTTTGAGTaGAGTGAGAGAAAAGCACTTGCCACTGCCGAAGAG +
Preference number: 6 (lower is better)
Translates to: GPKMDIVGASFE*SERKALATAEE
Trigger: CTCTTCGGCAGTGGCAAGTGCTTTTCTCTCACTTCACTCAAAGCTAGCACCTACTATGTCCATCTTAGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CCA 72 bp GAGAGTTACACGAAGCATCAAAAGGTATGCAGACATTaGCTCCTGGACACCAGAGTTCCTCAGGCACACACT +
Preference number: 6 (lower is better)
Translates to: ESYTKHQKVCRH*LLDTRVPQAHT
Trigger: AGTGTGTGCCTGAGGAACTCTGGTGTCCAGGAGCCAATGTCTGCATACCTTTTGATGCTTCGTGTAACTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000228745.2
CDS CCA 72 bp ACACGTCAGGAGGACAATGTAGTTGATGCTTGCAGATaGTTCAGGAAAGATGAACTGGACATGGCTGGGAGG +
Preference number: 6 (lower is better)
Translates to: TRQEDNVVDACR*FRKDELDMAGR
Trigger: CCTCCCAGCCATGTCCAGTTCATCTTTCCTGAACCATCTGCAAGCATCAACTACATTGTCCTCCTGACGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CAA 72 bp ACCAATGCCAGTGGGAATATGCCACTCCTAGTGAAGTaGTGTGTCACTGATGGATGCCCATGGACAGTCACA +
Preference number: 6 (lower is better)
Translates to: TNASGNMPLLVK*CVTDGCPWTVT
Trigger: TGTGACTGTCCATGGGCATCCATCAGTGACACACAACTTCACTAGGAGTGGCATATTCCCACTGGCATTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp CCACCAGCCAATTCAGCACAAAGGGTGAGACTCATGTaGACAGCAGCTGGATTAGGGGATGCAGATAGGATT +
Preference number: 6 (lower is better)
Translates to: PPANSAQRVRLM*TAAGLGDADRI
Trigger: AATCCTATCTGCATCCCCTAATCCAGCTGCTGTCAACATGAGTCTCACCCTTTGTGCTGAATTGGCTGGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp TTGGGCTCTGACACATCTGGGGCCTGCTCATACTCATaGAGCACAGTAATGAGGGCTAAAGAGTACTCGATG +
Preference number: 6 (lower is better)
Translates to: LGSDTSGACSYS*STVMRAKEYSM
Trigger: CATCGAGTACTCTTTAGCCCTCATTACTGTGCTCAATGAGTATGAGCAGGCCCCAGATGTGTCAGAGCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS GCA 72 bp TGCAGACATGAGAGTTACACGAAGCATCAAAAGGTATaGAGACATTGGCTCCTGGACACCAGAGTTCCTCAG +
Preference number: 6 (lower is better)
Translates to: CRHESYTKHQKV*RHWLLDTRVPQ
Trigger: CTGAGGAACTCTGGTGTCCAGGAGCCAATGTCTGCATACCTTTTGATGCTTCGTGTAACTCTCATGTCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000228745.2
CDS CCA 72 bp GGTATTGGACACAAGGACGGTCAAGTTGTACTCACCTaGGGTAGTGTAAATATGCGTGGTATTGTGTTCCAC +
Preference number: 6 (lower is better)
Translates to: GIGHKDGQVVLT*GSVNMRGIVFH
Trigger: GTGGAACACAATACCACGCATATTTACACTACCCCAGGTGAGTACAACTTGACCGTCCTTGTGTCCAATACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS CAA 72 bp ACTGTGCCATCTCCCATGTCAAATGTCCATGTAATGTaGTCACCTGACTCCACAGAAGCACTGACTACCATG +
Preference number: 6 (lower is better)
Translates to: TVPSPMSNVHVM*SPDSTEALTTM
Trigger: CATGGTAGTCAGTGCTTCTGTGGAGTCAGGTGACAACATTACATGGACATTTGACATGGGAGATGGCACAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5
CDS GCA 72 bp TATGACACACGTCAGGAGGACAATGTAGTTGATGCTTaGAGATGGTTCAGGAAAGATGAACTGGACATGGCT +
Preference number: 6 (lower is better)
Translates to: YDTRQEDNVVDA*RWFRKDELDMA
Trigger: AGCCATGTCCAGTTCATCTTTCCTGAACCATCTGCAAGCATCAACTACATTGTCCTCCTGACGTGTGTCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035565.5
ENSMUST00000227107.2
CDS CAA 72 bp ATGTTGCTCACATGGTTAGAGGCTGTCAGCGAGAGCTaGAAGATGGCAGCACTCTGGTATATTACATTGAAG +
Preference number: 6 (lower is better)
Translates to: MLLTWLEAVSES*KMAALWYITLK
Trigger: CTTCAATGTAATATACCAGAGTGCTGCCATCTTCAAGCTCTCGCTGACAGCCTCTAACCATGTGAGCAACAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035565.5