Pregenerated sensors for PJVK (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075267Ensembl transcript IDs: ENSMUST00000099986.3, ENSMUST00000144817.8, ENSMUST00000153471.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CGCATGGCTTCCCCACGAATCCCAGCGTGCACTGACAGAGAGCACTaGCGTGTGGTTCGGATGCTCTCCATGACCACGCACAGCACCGCC | + |
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Preference number: 5 (lower is better) Translates to: RMASPRIPACTDREH*RVVRMLSMTTHSTA Trigger: GGCGGTGCTGTGCGTGGTCATGGAGAGCATCCGAACCACACGCCAGTGCTCTCTGTCAGTGCACGCTGGGATTCGTGGGGAAGCCATGCG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 90 bp | CGTGCACTGACAGAGAGCACTGGCGTGTGGTTCGGATGCTCTCCATaGCCACGCACAGCACCGCCTTCCTGCTGCTCCTTGATTGGCGGA | + |
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Preference number: 5 (lower is better) Translates to: RALTESTGVWFGCSP*PRTAPPSCCSLIGG Trigger: TCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGTCATGGAGAGCATCCGAACCACACGCCAGTGCTCTCTGTCAGTGCACG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 90 bp | CATAAAATGAAACCGCATGGCTTCCCCACGAATCCCAGCGTGCACTaGCAGAGAGCACTGGCGTGTGGTTCGGATGCTCTCCATGACCAC | + |
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Preference number: 5 (lower is better) Translates to: HKMKPHGFPTNPSVH*QRALACGSDALHDH Trigger: GTGGTCATGGAGAGCATCCGAACCACACGCCAGTGCTCTCTGTCAGTGCACGCTGGGATTCGTGGGGAAGCCATGCGGTTTCATTTTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 90 bp | GATGCTCTCCATGACCACGCACAGCACCGCCTTCCTGCTGCTCCTTaGTTGGCGGATCAAACTGTGGTCAAAGTTAATTTTTCGTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: DALHDHAQHRLPAAP*LADQTVVKVNFSCS Trigger: ACTGCACGAAAAATTAACTTTGACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGTCATGGAGAGCATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 90 bp | CAGGGCCCTTTAGGAATGTTGTGGTTTAGTAAGTTCACTCGGATGTaGGTCCCCTCCTTGAGGGAAATGTCAGTCATGCTGAGGGGTTTG | + |
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Preference number: 5 (lower is better) Translates to: QGPLGMLWFSKFTRM*VPSLREMSVMLRGL Trigger: CAAACCCCTCAGCATGACTGACATTTCCCTCAAGGAGGGGACTCACATCCGAGTGAACTTACTAAACCACAACATTCCTAAAGGGCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS CCA 90 bp | CTCTCCATGACCACGCACAGCACCGCCTTCCTGCTGCTCCTTGATTaGCGGATCAAACTGTGGTCAAAGTTAATTTTTCGTGCAGTAATC | + |
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Preference number: 5 (lower is better) Translates to: LSMTTHSTAFLLLLD*RIKLWSKLIFRAVI Trigger: GATTACTGCACGAAAAATTAACTTTGACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGTCATGGAGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CCA 90 bp | CACAGCACCGCCTTCCTGCTGCTCCTTGATTGGCGGATCAAACTGTaGTCAAAGTTAATTTTTCGTGCAGTAATCTCCTTGAGTAATGTC | + |
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Preference number: 5 (lower is better) Translates to: HSTAFLLLLDWRIKL*SKLIFRAVISLSNV Trigger: GACATTACTCAAGGAGATTACTGCACGAAAAATTAACTTTGACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 90 bp | GAACATGGCAAAGGTTGTCGTTTCTTCCCTTTCAAATCCTCCTTTTaGCACAGATGTGACACAAATGTCGAAGGCACCGTCCAGGTAGAT | + |
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Preference number: 5 (lower is better) Translates to: EHGKGCRFFPFKSSF*HRCDTNVEGTVQVD Trigger: ATCTACCTGGACGGTGCCTTCGACATTTGTGTCACATCTGTGTCAAAAGGAGGATTTGAAAGGGAAGAAACGACAACCTTTGCCATGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS CCA 90 bp | AGAAGTCAGAAAAGAGGTCGTCCAGGTAAAGCTGGGAACGAGAGATaGCGTCCATCACTCTCCTGTTTCTTTCGAAGAGTATATTTCTCA | + |
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Preference number: 5 (lower is better) Translates to: RSQKRGRPGKAGNER*RPSLSCFFRRVYFS Trigger: TGAGAAATATACTCTTCGAAAGAAACAGGAGAGTGATGGACGCCATCTCTCGTTCCCAGCTTTACCTGGACGACCTCTTTTCTGACTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS TCA 72 bp | ACAGAGAGCACTGGCGTGTGGTTCGGATGCTCTCCATaGCCACGCACAGCACCGCCTTCCTGCTGCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: TESTGVWFGCSP*PRTAPPSCCSL Trigger: CAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGTCATGGAGAGCATCCGAACCACACGCCAGTGCTCTCTGT 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CCA 72 bp | TCCCCACGAATCCCAGCGTGCACTGACAGAGAGCACTaGCGTGTGGTTCGGATGCTCTCCATGACCACGCAC | + |
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Preference number: 6 (lower is better) Translates to: SPRIPACTDREH*RVVRMLSMTTH Trigger: GTGCGTGGTCATGGAGAGCATCCGAACCACACGCCAGTGCTCTCTGTCAGTGCACGCTGGGATTCGTGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 72 bp | AAACCGCATGGCTTCCCCACGAATCCCAGCGTGCACTaGCAGAGAGCACTGGCGTGTGGTTCGGATGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: KPHGFPTNPSVH*QRALACGSDAL Trigger: GAGAGCATCCGAACCACACGCCAGTGCTCTCTGTCAGTGCACGCTGGGATTCGTGGGGAAGCCATGCGGTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 72 bp | CCACCAGACTCAGGGGTTGGTACTTGTCAGCTTCGCTaGGGCTTGGGACAGGGACTAATCTCCCTCCATCTC | + |
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Preference number: 6 (lower is better) Translates to: PPDSGVGTCQLR*GLGQGLISLHL Trigger: GAGATGGAGGGAGATTAGTCCCTGTCCCAAGCCTCAGCGAAGCTGACAAGTACCAACCCCTGAGTCTGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 ENSMUST00000153471.2 |
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| CDS TCA 72 bp | ATTCTCTTGTGCCAGATATCAAAGCAAGGGACTGCGTaGAGACGCACGTACTTCACGCCGTCCACAGAACAC | + |
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Preference number: 6 (lower is better) Translates to: ILLCQISKQGTA*RRTYFTPSTEH Trigger: GTGTTCTGTGGACGGCGTGAAGTACGTGCGTCTTCACGCAGTCCCTTGCTTTGATATCTGGCACAAGAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS TCA 72 bp | CATGACCACGCACAGCACCGCCTTCCTGCTGCTCCTTaGTTGGCGGATCAAACTGTGGTCAAAGTTAATTTT | + |
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Preference number: 6 (lower is better) Translates to: HDHAQHRLPAAP*LADQTVVKVNF Trigger: AAAATTAACTTTGACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGTCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CCA 72 bp | ACCACGCACAGCACCGCCTTCCTGCTGCTCCTTGATTaGCGGATCAAACTGTGGTCAAAGTTAATTTTTCGT | + |
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Preference number: 6 (lower is better) Translates to: TTHSTAFLLLLD*RIKLWSKLIFR Trigger: ACGAAAAATTAACTTTGACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGCGGTGCTGTGCGTGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CCA 72 bp | AAAAGAGGTCGTCCAGGTAAAGCTGGGAACGAGAGATaGCGTCCATCACTCTCCTGTTTCTTTCGAAGAGTA | + |
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Preference number: 6 (lower is better) Translates to: KRGRPGKAGNER*RPSLSCFFRRV Trigger: TACTCTTCGAAAGAAACAGGAGAGTGATGGACGCCATCTCTCGTTCCCAGCTTTACCTGGACGACCTCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS CAA 90 bp | GTCGAAACTTCCACCTCATGTTTGGTCACGACACCAAATGAAGCTTaGACTGCGATGGAATCAGATCCAGTGACATTAATCCCCACGTCA | + |
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Preference number: 6 (lower is better) Translates to: VETSTSCLVTTPNEA*TAMESDPVTLIPTS Trigger: TGACGTGGGGATTAATGTCACTGGATCTGATTCCATCGCAGTCAAAGCTTCATTTGGTGTCGTGACCAAACATGAGGTGGAAGTTTCGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 72 bp | CGAAACTTCCACCTCATGTTTGGTCACGACACCAAATaGAGCTTTGACTGCGATGGAATCAGATCCAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: RNFHLMFGHDTK*SFDCDGIRSSD Trigger: GTCACTGGATCTGATTCCATCGCAGTCAAAGCTTCATTTGGTGTCGTGACCAAACATGAGGTGGAAGTTTCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 72 bp | TTAGGAATGTTGTGGTTTAGTAAGTTCACTCGGATGTaGGTCCCCTCCTTGAGGGAAATGTCAGTCATGCTG | + |
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Preference number: 6 (lower is better) Translates to: LGMLWFSKFTRM*VPSLREMSVML Trigger: CAGCATGACTGACATTTCCCTCAAGGAGGGGACTCACATCCGAGTGAACTTACTAAACCACAACATTCCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS CCA 72 bp | GCCTTCCTGCTGCTCCTTGATTGGCGGATCAAACTGTaGTCAAAGTTAATTTTTCGTGCAGTAATCTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: AFLLLLDWRIKL*SKLIFRAVISL Trigger: CAAGGAGATTACTGCACGAAAAATTAACTTTGACCACAGTTTGATCCGCCAATCAAGGAGCAGCAGGAAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CAA 90 bp | CGTGCAGTAATCTCCTTGAGTAATGTCGAAACTTCCACCTCATGTTaGGTCACGACACCAAATGAAGCTTTGACTGCGATGGAATCAGAT | + |
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Preference number: 6 (lower is better) Translates to: RAVISLSNVETSTSC*VTTPNEALTAMESD Trigger: ATCTGATTCCATCGCAGTCAAAGCTTCATTTGGTGTCGTGACCAAACATGAGGTGGAAGTTTCGACATTACTCAAGGAGATTACTGCACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS TCA 72 bp | AAAGGTTGTCGTTTCTTCCCTTTCAAATCCTCCTTTTaGCACAGATGTGACACAAATGTCGAAGGCACCGTC | + |
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Preference number: 6 (lower is better) Translates to: KGCRFFPFKSSF*HRCDTNVEGTV Trigger: GACGGTGCCTTCGACATTTGTGTCACATCTGTGTCAAAAGGAGGATTTGAAAGGGAAGAAACGACAACCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS CAA 72 bp | TCCACCTCATGTTTGGTCACGACACCAAATGAAGCTTaGACTGCGATGGAATCAGATCCAGTGACATTAATC | + |
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Preference number: 6 (lower is better) Translates to: STSCLVTTPNEA*TAMESDPVTLI Trigger: GATTAATGTCACTGGATCTGATTCCATCGCAGTCAAAGCTTCATTTGGTGTCGTGACCAAACATGAGGTGGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CAA 72 bp | ATCTCCTTGAGTAATGTCGAAACTTCCACCTCATGTTaGGTCACGACACCAAATGAAGCTTTGACTGCGATG | + |
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Preference number: 6 (lower is better) Translates to: ISLSNVETSTSC*VTTPNEALTAM Trigger: CATCGCAGTCAAAGCTTCATTTGGTGTCGTGACCAAACATGAGGTGGAAGTTTCGACATTACTCAAGGAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CAA 90 bp | TCTCCCAGGAGAATATCTTTAAGTGTGAAAGGAGTGGATGTGAATTaGCATCTAGGAAACAGAAAACACCGCTTCTTTTTCACCACCAGA | + |
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Preference number: 6 (lower is better) Translates to: SPRRISLSVKGVDVN*HLGNRKHRFFFTTR Trigger: TCTGGTGGTGAAAAAGAAGCGGTGTTTTCTGTTTCCTAGATGCAAATTCACATCCACTCCTTTCACACTTAAAGATATTCTCCTGGGAGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 ENSMUST00000153471.2 |
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| CDS CAA 72 bp | CTGTGGTCAAAGTTAATTTTTCGTGCAGTAATCTCCTaGAGTAATGTCGAAACTTCCACCTCATGTTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LWSKLIFRAVIS*SNVETSTSCLV Trigger: GACCAAACATGAGGTGGAAGTTTCGACATTACTCAAGGAGATTACTGCACGAAAAATTAACTTTGACCACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 |
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| CDS CCA 72 bp | TTCTTTCGAAGAGTATATTTCTCAGTCTGTAGAACATaGCAAAGGTTGTCGTTTCTTCCCTTTCAAATCCTC | + |
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Preference number: 6 (lower is better) Translates to: FFRRVYFSVCRT*QRLSFLPFQIL Trigger: GAGGATTTGAAAGGGAAGAAACGACAACCTTTGCCATGTTCTACAGACTGAGAAATATACTCTTCGAAAGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099986.3 |
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| CDS CAA 72 bp | AGAATATCTTTAAGTGTGAAAGGAGTGGATGTGAATTaGCATCTAGGAAACAGAAAACACCGCTTCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: RISLSVKGVDVN*HLGNRKHRFFF Trigger: GAAAAAGAAGCGGTGTTTTCTGTTTCCTAGATGCAAATTCACATCCACTCCTTTCACACTTAAAGATATTCT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000099986.3 ENSMUST00000144817.8 ENSMUST00000153471.2 |
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