Pregenerated sensors for PITX3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025229Ensembl transcript IDs: ENSMUST00000026259.16, ENSMUST00000172971.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCGAGGGAAAAGGCCCTCTTCGAAGCCCGCGGCCTCTTCCCGGGTaGTCTGGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTC | + |
|
Preference number: 1 (lower is better) Translates to: CEGKGPLRSPRPLPG*SGTPFRPWDEGKPV Trigger: GACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAGAGCACCCGGGAAGAGGCCGCGGGCTTCGAAGAGGGCCTTTTCCCTCGCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| 3UTR CCA 90 bp | GGGAAAAGGCCCTCTTCGAAGCCCGCGGCCTCTTCCCGGGTGCTCTaGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGC | + |
|
Preference number: 1 (lower is better) Translates to: GKRPSSKPAASSRVL*HPFQTLGRGQASLG Trigger: GCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAGAGCACCCGGGAAGAGGCCGCGGGCTTCGAAGAGGGCCTTTTCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| 3UTR CCA 72 bp | CCCTCTTCGAAGCCCGCGGCCTCTTCCCGGGTGCTCTaGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCC | + |
|
Preference number: 3 (lower is better) Translates to: PSSKPAASSRVL*HPFQTLGRGQA Trigger: GGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAGAGCACCCGGGAAGAGGCCGCGGGCTTCGAAGAGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| 3UTR GCA 72 bp | TCTAGGCGACCCCTGTCCGGAGAGGCTGTGAATTACTaGCCCGCCCTCGGGGATGGATCCACAGACCTGCGG | + |
|
Preference number: 3 (lower is better) Translates to: SRRPLSGEAVNY*PALGDGSTDLR Trigger: CCGCAGGTCTGTGGATCCATCCCCGAGGGCGGGGCAGTAATTCACAGCCTCTCCGGACAGGGGTCGCCTAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CCA 90 bp | GCCTTAGTCCTAGGGGCGCGGTCTCCGCATAGGGGTCAGACCACCGCTCGGGGGGCGGGGCGAGAGCCTTaGGCGGCCAGTTGCCGTACG | + |
|
Preference number: 4 (lower is better) Translates to: ALVLGARSPHRGQTTARGAGREP*AASCRT Trigger: CGTACGGCAACTGGCCGCCCAAGGCTCTCGCCCCGC...CCCCCGAGCGGTGGTCTGACCCCTATGCGGAGACCGCGCCCCTAGGACTAAGGC 71% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR TCA 90 bp | TTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGTGGCGCGCCGGTTCTTaGACCACACCCGCACGCGGG | + |
|
Preference number: 4 (lower is better) Translates to: FQTLGRGQASLGDPCPERWRAGS*TTPARG Trigger: CCCGCGTGCGGGTGTGGTTCAAGAACCGGCGCGCCA...CCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | GGGAAAAGGCCCTCTTCGAAGCCCGCGGCCTCTTCCCGGGTGCTCTGGCACCCCGTGCGCTGCCGCCGCTaGTTCTTCTTCAGAGAGCCG | + |
|
Preference number: 4 (lower is better) Translates to: GKRPSSKPAASSRVLWHPVRCRR*FFFREP Trigger: CGGCTCTCTGAAGAAGAAGCAGCGGCGGCAGCGCAC...GGGGTGCCAGAGCACCCGGGAAGAGGCCGCGGGCTTCGAAGAGGGCCTTTTCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | TTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGGCTCCGCCTGCTGGCTaGGCTCCCGCTTCCGCCACT | + |
|
Preference number: 4 (lower is better) Translates to: FQTLGRGQASLGDPCPERAPPAG*APASAT Trigger: AGTGGCGGAAGCGGGAGCGCAGCCAGCAGGCGGAGC...CCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CCA 90 bp | GGTGCTCTGGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACACAGCTCCGCCTGCTaGCTGCGCTCCCGCTTCCGC | + |
|
Preference number: 4 (lower is better) Translates to: GALAPLSDPGTRASQSRRHSSAC*LRSRFR Trigger: GCGGAAGCGGGAGCGCAGCCAGCAGGCGGAGCTGTG...TCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAGAGCACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CCA 90 bp | TCCCTGTTCCTGGCCTTAGTCCTAGGGGCGCGGTCTCCGCATAGGGGTCAGACCCACCTCCTCGTAGGGTaGCACCAGGCCCCCGAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: SLFLALVLGARSPHRGQTHLLVG*HQAPER Trigger: CCGCTCGGGGGCCTGGTGCCACCCTACGAGGAGGTG...GGTCTGACCCCTATGCGGAGACCGCGCCCCTAGGACTAAGGCCAGGAACAGGGA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CCA 90 bp | CTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGCGAACGGGAAGGTCTTaGCGGCGAGCGGCGGGGCGA | + |
|
Preference number: 4 (lower is better) Translates to: LSDPGTRASQSRRPLSGERTGRS*RRAAGR Trigger: TCGCCCCGCCGCTCGCCGCCAAGACCTTCCCGTTCG...CTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | GGTGCTCTGGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGAGTAAGGGCAGGACACTaGCCCGGAGGACACGGCGGC | + |
|
Preference number: 4 (lower is better) Translates to: GALAPLSDPGTRASQSRRVRAGH*PGGHGG Trigger: GCCGCCGTGTCCTCCGGGGCAGTGTCCTGCCCTTAC...TCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAGAGCACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | GACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGCTGTGGCGGAGGGTGTGGAGTaGCTGCGTCCGATAACGACA | + |
|
Preference number: 4 (lower is better) Translates to: DPGTRASQSRRPLSGEAVAEGVE*LRPITT Trigger: TGTCGTTATCGGACGCAGGCACTCCACACCCTCCGC...CACAGCCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | GGAGAGGCTGTGAATTACTGCCCCGCCCTCGGGGATGGATCCACAGACCTGCGGTTGCACAGCTCCGCCTaGTGGCTGCGCTCCCGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GEAVNYCPALGDGSTDLRLHSSA*WLRSRF Trigger: GAAGCGGGAGCGCAGCCAGCAGGCGGAGCTGTGCAA...CCGCAGGTCTGTGGATCCATCCCCGAGGGCGGGGCAGTAATTCACAGCCTCTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | GGAGAGGCTGTGAATTACTGCCCCGCCCTCGGGGATGGATCCACAGACCTGCGGCCTTGGGCGGCCAGTTaGCGTACGAGTAGCCCGGGT | + |
|
Preference number: 4 (lower is better) Translates to: GEAVNYCPALGDGSTDLRPWAAS*RTSSPG Trigger: ACCCGGGCTACTCGTACGGCAACTGGCCGCCCAAGG...CCGCAGGTCTGTGGATCCATCCCCGAGGGCGGGGCAGTAATTCACAGCCTCTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | CCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAAGGGCTTCGCGCCTCTaGCTCACCAAGCAGCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: PLSDPGTRASQSRRPLSGRASRL*LTKQPK Trigger: TTTGGGCTGCTTGGTGAGGCAGAGGCGCGAAGCCCT...TCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR TCA 90 bp | CCTGTCCGGAGAGGCTGTGAATTACTGCCCCGCCCTCGGGGATGGATCCACAGAGCACGGCGGGATAGCTaGAAGAGGCGTGCTGCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: PVRRGCELLPRPRGWIHRARRDS*KRRAAW Trigger: CCAAGCAGCACGCCTCTTTCAGCTATCCCGCCGTGC...TCTGTGGATCCATCCCCGAGGGCGGGGCAGTAATTCACAGCCTCTCCGGACAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | CTGGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTGTGCTCCTGCCCCTTaGAGCCATGTTCTGGAAGCG | + |
|
Preference number: 4 (lower is better) Translates to: LAPLSDPGTRASQSRRPLCAPAP*SHVLEA Trigger: CGCTTCCAGAACATGGCTGCAAGGGGCAGGAGCACA...CAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | CTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGTGAAGTGCGTGCGCTaGCGCCGCTGCTTCTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LSDPGTRASQSRRPLSGEVKCVR*RRCFFF Trigger: GAAGAAGAAGCAGCGGCGGCAGCGCACGCACTTCAC...CTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CCA 90 bp | TTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGCGTTCCACGGCGTACTaGCAGGGGCTAAGGTTAGCG | + |
|
Preference number: 4 (lower is better) Translates to: FQTLGRGQASLGDPCPERRSTAY*QGLRLA Trigger: CGCTAACCTTAGCCCCTGCCAGTACGCCGTGGAACG...CCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | CTGGCACCCCTTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGGAGTCACTGTGCTCCTaGCCCTTGCAGCCATGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LAPLSDPGTRASQSRRPLESLCS*PLQPCS Trigger: AGAACATGGCTGCAAGGGGCAGGAGCACAGTGACTC...CAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAAGGGGTGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR GCA 90 bp | TCCCTGTTCCTGGCCTTAGTCCTAGGGGCGCGGTCTCCGCATAGGGGTCAGACCCTGAAAGAGGCGTGCTaGTTGGCTTTGAGCCGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SLFLALVLGARSPHRGQTLKEAC*LALSRR Trigger: CCTGCGGCTCAAAGCCAAGCAGCACGCCTCTTTCAG...GGTCTGACCCCTATGCGGAGACCGCGCCCCTAGGACTAAGGCCAGGAACAGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CCA 90 bp | ACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGCTGTGAATTACTGCAAGCGGCGATGGAGCTaGGCGGTGAGAATACAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: TRASQSRRPLSGEAVNYCKRRWS*AVRIQA Trigger: AGCCTGTATTCTCACCGCCCAGCTCCATCGCCGCTT...GCAGTAATTCACAGCCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CAA 90 bp | GGGAAAAGGCCCTCTTCGAAGCCCGCGGCCTCTTCCCGGGTGCTCTGGCACCCCGGCGGGGCGAGAGCCTaGGGCGGCCAGTTGCCGTAC | + |
|
Preference number: 5 (lower is better) Translates to: GKRPSSKPAASSRVLWHPGGARA*GGQLPY Trigger: GTACGGCAACTGGCCGCCCAAGGCTCTCGCCCCGCC...GGGGTGCCAGAGCACCCGGGAAGAGGCCGCGGGCTTCGAAGAGGGCCTTTTCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CAA 90 bp | GACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGCTGTGGCGAACGGGAAGGTCTaGGCGGCGAGCGGCGGGGCG | + |
|
Preference number: 5 (lower is better) Translates to: DPGTRASQSRRPLSGEAVANGKV*AASGGA Trigger: CGCCCCGCCGCTCGCCGCCAAGACCTTCCCGTTCGC...CACAGCCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS CCA 90 bp | AGGCGAACGGGAAGGTCTTGGCGGCGAGCGGCGGGGCGAGAGCCTTaGGCGGCCAGTTGCCGTACGAGTAGCCCGGGTACACCTCCTCGT | + |
|
Preference number: 5 (lower is better) Translates to: RRTGRSWRRAAGREP*AASCRTSSPGTPPR Trigger: ACGAGGAGGTGTACCCGGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTCGCCCCGCCGCTCGCCGCCAAGACCTTCCCGTTCGCCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS GCA 90 bp | GCTCCTGCCCCTTGCAGCCATGTTCTGGAAGCGGAGGGTGTGGAGTaGCTGCGTCCGATAACGACAGCGCAGGGCTTCGCGCCTCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: APAPCSHVLEAEGVE*LRPITTAQGFAPLP Trigger: AGGCAGAGGCGCGAAGCCCTGCGCTGTCGTTATCGGACGCAGGCACTCCACACCCTCCGCTTCCAGAACATGGCTGCAAGGGGCAGGAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026259.16 ENSMUST00000172971.2 |
||
| CDS-3UTR CAA 90 bp | GCCTTAGTCCTAGGGGCGCGGTCTCCGCATAGGGGTCAGACCACCGCTCGGGGGAAAGAGGCGTGCTGCTaGGCTTTGAGCCGCAGGCTA | + |
|
Preference number: 5 (lower is better) Translates to: ALVLGARSPHRGQTTARGKEACC*ALSRRL Trigger: TAGCCTGCGGCTCAAAGCCAAGCAGCACGCCTCTTT...CCCCCGAGCGGTGGTCTGACCCCTATGCGGAGACCGCGCCCCTAGGACTAAGGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CAA 90 bp | TTTCAGACCCTGGGACGAGGGCAAGCCAGTCTAGGCGACCCCTGTCCGGAGAGGGCCAGAGGCCCCACGTaGACCGAGTTGAAGGCGAAC | + |
|
Preference number: 5 (lower is better) Translates to: FQTLGRGQASLGDPCPERARGPT*TELKAN Trigger: GTTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGC...CCTCTCCGGACAGGGGTCGCCTAGACTGGCTTGCCCTCGTCCCAGGGTCTGAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS-3UTR CAA 90 bp | GGAGAGGCTGTGAATTACTGCCCCGCCCTCGGGGATGGATCCACAGACCTGCGGCCCACGTTGACCGAGTaGAAGGCGAACGGGAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: GEAVNYCPALGDGSTDLRPTLTE*KANGKV Trigger: GACCTTCCCGTTCGCCTTCAACTCGGTCAACGTGGG...CCGCAGGTCTGTGGATCCATCCCCGAGGGCGGGGCAGTAATTCACAGCCTCTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS GCA 72 bp | GGCGGCTGCGGCGGCCGAGGCGTAAGGGCAGGACACTaGCCCGGAGGACACGGCGGCTGGAGCCAGCCCGGG | + |
|
Preference number: 6 (lower is better) Translates to: GGCGGRGVRAGH*PGGHGGWSQPG Trigger: CCCGGGCTGGCTCCAGCCGCCGTGTCCTCCGGGGCAGTGTCCTGCCCTTACGCCTCGGCCGCCGCAGCCGCC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS GCA 72 bp | CGGCGAGCGGCGGGGCGAGAGCCTTGGGCGGCCAGTTaGCGTACGAGTAGCCCGGGTACACCTCCTCGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: RRAAGREPWAAS*RTSSPGTPPRR Trigger: CCTACGAGGAGGTGTACCCGGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTCGCCCCGCCGCTCGCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS CCA 72 bp | GGAAGGTCTTGGCGGCGAGCGGCGGGGCGAGAGCCTTaGGCGGCCAGTTGCCGTACGAGTAGCCCGGGTACA | + |
|
Preference number: 6 (lower is better) Translates to: GRSWRRAAGREP*AASCRTSSPGT Trigger: TGTACCCGGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTCGCCCCGCCGCTCGCCGCCAAGACCTTCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS CAA 72 bp | ACAGGCTGTGAAGCCAGAGGCCCCACGTTGACCGAGTaGAAGGCGAACGGGAAGGTCTTGGCGGCGAGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: TGCEARGPTLTE*KANGKVLAASG Trigger: GCCGCTCGCCGCCAAGACCTTCCCGTTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCACAGCCTGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS CAA 90 bp | GGTGAGAATACAGGCTGTGAAGCCAGAGGCCCCACGTTGACCGAGTaGAAGGCGAACGGGAAGGTCTTGGCGGCGAGCGGCGGGGCGAGA | + |
|
Preference number: 6 (lower is better) Translates to: GENTGCEARGPTLTE*KANGKVLAASGGAR Trigger: TCTCGCCCCGCCGCTCGCCGCCAAGACCTTCCCGTTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCACAGCCTGTATTCTCACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS CAA 90 bp | GAGCTGGGCGGTGAGAATACAGGCTGTGAAGCCAGAGGCCCCACGTaGACCGAGTTGAAGGCGAACGGGAAGGTCTTGGCGGCGAGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: ELGGENTGCEARGPT*TELKANGKVLAASG Trigger: GCCGCTCGCCGCCAAGACCTTCCCGTTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCACAGCCTGTATTCTCACCGCCCAGCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||
| CDS GCA 72 bp | CCTTGCAGCCATGTTCTGGAAGCGGAGGGTGTGGAGTaGCTGCGTCCGATAACGACAGCGCAGGGCTTCGCG | + |
|
Preference number: 6 (lower is better) Translates to: PCSHVLEAEGVE*LRPITTAQGFA Trigger: CGCGAAGCCCTGCGCTGTCGTTATCGGACGCAGGCACTCCACACCCTCCGCTTCCAGAACATGGCTGCAAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026259.16 ENSMUST00000172971.2 |
||
| CDS GCA 72 bp | CCGAGGCCTTCTCCGAGTCACTGTGCTCCTGCCCCTTaGAGCCATGTTCTGGAAGCGGAGGGTGTGGAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: PRPSPSHCAPAP*SHVLEAEGVEC Trigger: GCACTCCACACCCTCCGCTTCCAGAACATGGCTGCAAGGGGCAGGAGCACAGTGACTCGGAGAAGGCCTCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026259.16 ENSMUST00000172971.2 |
||
| CDS GCA 72 bp | AGTGAGGCCGAGGCCTTCTCCGAGTCACTGTGCTCCTaGCCCTTGCAGCCATGTTCTGGAAGCGGAGGGTGT | + |
|
Preference number: 6 (lower is better) Translates to: SEAEAFSESLCS*PLQPCSGSGGC Trigger: ACACCCTCCGCTTCCAGAACATGGCTGCAAGGGGCAGGAGCACAGTGACTCGGAGAAGGCCTCGGCCTCACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026259.16 ENSMUST00000172971.2 |
||
| CDS CAA 72 bp | GGTGAGAATACAGGCTGTGAAGCCAGAGGCCCCACGTaGACCGAGTTGAAGGCGAACGGGAAGGTCTTGGCG | + |
|
Preference number: 6 (lower is better) Translates to: GENTGCEARGPT*TELKANGKVLA Trigger: CGCCAAGACCTTCCCGTTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCACAGCCTGTATTCTCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026259.16 |
||