RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PITX1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021506

Ensembl transcript IDs: ENSMUST00000021968.7, ENSMUST00000173618.2

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCTGCTGGCTGGCCTCGGCCAGCTGCGGCTCAGTGGCCTCAAGTGTaGGGCTCCAGAGCTCAGTGCTGCTGGGCTCTTCCTGGCATCCCG +
Preference number: 1 (lower is better)
Translates to: AAGWPRPAAAQWPQV*GSRAQCCWALPGIP
Trigger: CGGGATGCCAGGAAGAGCCCAGCAGCACTGAGCTCTGGAGCCGCACACTTGAGGCCACTGAGCCGCAGCTGGCCGAGGCCAGCCAGCAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CCA 90 bp GACTCTTGCACGGGCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTaGGCCACCTCCTGGACCCAGAGTGGAGCAGAGGGCCGGGCTAGC +
Preference number: 1 (lower is better)
Translates to: DSCTGRRTVEKGAVR*ATSWTQSGAEGRAS
Trigger: GCTAGCCCGGCCCTCTGCTCCACTCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGCCCGTGCAAGAGTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CCA 90 bp GCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTaGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGAGTG +
Preference number: 1 (lower is better)
Translates to: APRSPGSTLARAGGQ*RRGLFAGPPPGPRV
Trigger: CACTCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CCA 90 bp CCTTCTCCTCCTGCTGCTGGCTGGCCTCGGCCAGCTGCGGCTCAGTaGCCTCAAGTGTGCGGCTCCAGAGCTCAGTGCTGCTGGGCTCTT +
Preference number: 1 (lower is better)
Translates to: PSPPAAGWPRPAAAQ*PQVCGSRAQCCWAL
Trigger: AAGAGCCCAGCAGCACTGAGCTCTGGAGCCGCACACTTGAGGCCACTGAGCCGCAGCTGGCCGAGGCCAGCCAGCAGCAGGAGGAGAAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR TCA 90 bp TTAGCACGCTCCGACTATGGTTTTAATAGACGTACATGGACAAGTTaGTATAGACAGATTTATAATTCTATACAGTCAGTCCGACATACA +
Preference number: 1 (lower is better)
Translates to: LARSDYGFNRRTWTS*YRQIYNSIQSVRHT
Trigger: TGTATGTCGGACTGACTGTATAGAATTATAAATCTGTCTATATCAACTTGTCCATGTACGTCTATTAAAACCATAGTCGGAGCGTGCTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGTTCTCCTCCTGCTGCTaGCTGGCCTCGGCCAGCTGC +
Preference number: 2 (lower is better)
Translates to: QGRCKRARAGERVCKVGGFSSCC*LASASC
Trigger: GCAGCTGGCCGAGGCCAGCCAGCAGCAGGAGGAGAA...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR GCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGACCCTTCTCCTCCTGCTaGTGGCTGGCCTCGGCCAGC +
Preference number: 2 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRPFSSC*WLASAS
Trigger: GCTGGCCGAGGCCAGCCAGCAGCAGGAGGAGAAGGG...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGAAACCTGGAGGCGGGGTaGGGAGGAAGGGGCTGCGCA +
Preference number: 2 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRNLEAG*GGRGCA
Trigger: TGCGCAGCCCCTTCCTCCCCACCCCGCCTCCAGGTT...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR GCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGCAGTGGCCTCAAGTGTaGGGCTCCAGAGCTCAGTGC +
Preference number: 2 (lower is better)
Translates to: QGRCKRARAGERVCKVGGQWPQV*GSRAQC
Trigger: GCACTGAGCTCTGGAGCCGCACACTTGAGGCCACTG...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR GCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGACTGGCCTCGGCCAGCTaGGGCTCAGTGGCCTCAAGT +
Preference number: 2 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRLASAS*GSVASS
Trigger: ACTTGAGGCCACTGAGCCGCAGCTGGCCGAGGCCAG...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGACGCTGGGCCACCTCCTaGACCCAGAGTGGAGCAGAG +
Preference number: 2 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRRWATS*TQSGAE
Trigger: CTCTGCTCCACTCTGGGTCCAGGAGGTGGCCCAGCG...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp GACTCTTGCACGGGCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCCTGCTGGGCTCTTCCTaGCATCCCGGGACCTTAGGC +
Preference number: 2 (lower is better)
Translates to: DSCTGRRTVEKGAVRWATLLGSS*HPGTLG
Trigger: GCCTAAGGTCCCGGGATGCCAGGAAGAGCCCAGCAG...GGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGCCCGTGCAAGAGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR TCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGATGGGGAACTCAGAGCTaGGCCCTTCTCCTCCTGCTG +
Preference number: 2 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRWGTQS*ALLLLL
Trigger: CAGCAGGAGGAGAAGGGCTCAGCTCTGAGTTCCCCA...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR TCA 90 bp ATCGCCAGGGACATTGCAACTTACCCCCACCTCCAGCATTTTTCTCCGACGTCTGCGCGCTCCCTTCTGTaGGCCTTGCTGGCCGGCGGC +
Preference number: 2 (lower is better)
Translates to: IARDIATYPHLQHFSPTSARSLL*ALLAGG
Trigger: GCCGCCGGCCAGCAAGGCTCACAGAAGGGAGCGCGC...AGACGTCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR GCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGGAGCCCTTCTCCTCCTaGTGCTGGCTGGCCTCGGCC +
Preference number: 2 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPEPFSS*CWLASA
Trigger: GGCCGAGGCCAGCCAGCAGCAGGAGGAGAAGGGCTC...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGGGCCCCTCGCTCTCCTaGCTCGACTCTTGCACGGGC +
Preference number: 2 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPGPSLS*LDSCTG
Trigger: GCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCC...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGACCCGACCCCCTCCCTTaGCTTGCTTTCTTTTCTTTT +
Preference number: 2 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRPDPLP*LAFFSF
Trigger: AAAAGAAAAGAAAGCAAGCCAAGGGAGGGGGTCGGG...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR GCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGGGCTCCAGAGCTCAGTaGTGCTGGGCTCTTCCTGGC +
Preference number: 2 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPGSRAQ*CWALPG
Trigger: GCCAGGAAGAGCCCAGCAGCACTGAGCTCTGGAGCC...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGAGAGCTCAGTGCTGCTaGGCTCTTCCTGGCATCCCG +
Preference number: 2 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPRAQCC*ALPGIP
Trigger: CGGGATGCCAGGAAGAGCCCAGCAGCACTGAGCTCT...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CCA 72 bp CCTGCTGCTGGCTGGCCTCGGCCAGCTGCGGCTCAGTaGCCTCAAGTGTGCGGCTCCAGAGCTCAGTGCTGC +
Preference number: 3 (lower is better)
Translates to: PAAGWPRPAAAQ*PQVCGSRAQCC
Trigger: GCAGCACTGAGCTCTGGAGCCGCACACTTGAGGCCACTGAGCCGCAGCTGGCCGAGGCCAGCCAGCAGCAGG
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CCA 72 bp ACGGGCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTaGGCCACCTCCTGGACCCAGAGTGGAGCAGAGGGC +
Preference number: 3 (lower is better)
Translates to: TGRRTVEKGAVR*ATSWTQSGAEG
Trigger: GCCCTCTGCTCCACTCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGCCCGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR TCA 72 bp CAGGGCCTCCAGGTTCCCTACATTCAGTTCACGGGTTaGGGCGCTCCGGCGGGGACGCGCGGCATCTTCTCC +
Preference number: 3 (lower is better)
Translates to: QGLQVPYIQFTG*GAPAGTRGIFS
Trigger: GGAGAAGATGCCGCGCGTCCCCGCCGGAGCGCCTCAACCCGTGAACTGAATGTAGGGAACCTGGAGGCCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CCA 72 bp TCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTaGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGA +
Preference number: 3 (lower is better)
Translates to: SPGSTLARAGGQ*RRGLFAGPPPG
Trigger: TCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR-3UTR CAA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGACCCGACCCCCTCCCTaGGCTTGCTTTCTTTTCTTT +
Preference number: 3 (lower is better)
Translates to: QGRCKRARAGERVCKVGGTRPPP*ACFLFF
Trigger: AAAGAAAAGAAAGCAAGCCAAGGGAGGGGGTCGGGT...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGGCTGTAGGGCGAGGCTaGGGTGCCGTAGGGGCAGGC +
Preference number: 4 (lower is better)
Translates to: QGRCKRARAGERVCKVGGAVGRG*GAVGAG
Trigger: GCCTGCCCCTACGGCACCCCAGCCTCGCCCTACAGC...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGAGTCGTGCGGTGGTGGTaGCGGTGGCCGCAGCCCCTC +
Preference number: 4 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRVVRWW*RWPQPL
Trigger: GAGGGGCTGCGGCCACCGCCACCACCACCGCACGAC...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGAGCGGCGCGGGCCAGGTaGAAGCTGGGCCCCATGTCG +
Preference number: 4 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRAARAR*KLGPMS
Trigger: CGACATGGGGCCCAGCTTCCACCTGGCCCGCGCCGC...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGACCCCATGTCGTGCGGTaGTGGTGGCGGTGGCCGCAG +
Preference number: 4 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRPHVVR*WWRWPQ
Trigger: CTGCGGCCACCGCCACCACCACCGCACGACATGGGG...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR GCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGACTTAGCTGGGTCCTCTaGACCGCCGCCGCAGCCAGC +
Preference number: 4 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRLSWVL*TAAAAS
Trigger: GCTGGCTGCGGCGGCGGTGCAGAGGACCCAGCTAAG...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGCGTCGGACGATTCGCTaGCGGAGTTCTCCAGCGGCT +
Preference number: 4 (lower is better)
Translates to: QGRCKRARAGERVCKVGGRRTIR*RSSPAA
Trigger: AGCCGCTGGAGAACTCCGCCAGCGAATCGTCCGACG...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR TCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGTGCTGGCTTGTGAAGTaGGTGCGTTGCCGCCGCTGT +
Preference number: 4 (lower is better)
Translates to: QGRCKRARAGERVCKVGGCWLVK*VRCRRC
Trigger: ACAGCGGCGGCAACGCACTCACTTCACAAGCCAGCA...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR TCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGGCAACTGCTGGCTTGTaGAGTGAGTGCGTTGCCGCC +
Preference number: 4 (lower is better)
Translates to: QGRCKRARAGERVCKVGGATAGL*SECVAA
Trigger: GGCGGCAACGCACTCACTTCACAAGCCAGCAGTTGC...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR GCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGAGGTTCCGCTCCCGCTTaGGCCATTTGGCTCGCCGGT +
Preference number: 4 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRGSAPA*AIWLAG
Trigger: ACCGGCGAGCCAAATGGCGCAAGCGGGAGCGGAACC...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGACGCCCGGGCCCATGCTaGACGGCATGGTCATGGAAG +
Preference number: 4 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRRPGPC*TAWSWK
Trigger: CTTCCATGACCATGCCGTCCAGCATGGGCCCGGGCG...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR GCA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGCCAAACGACGAGTGCTaGTTGGACTTGAGCCGCAGG +
Preference number: 4 (lower is better)
Translates to: QGRCKRARAGERVCKVGGPNDEC*LDLSRR
Trigger: CCTGCGGCTCAAGTCCAAGCAGCACTCGTCGTTTGG...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR TCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGAGCCGAGAACATGGATTaGGAGGAGAGCGGGCTCATG +
Preference number: 4 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRAENMD*EESGLM
Trigger: CATGAGCCCGCTCTCCTCTCAATCCATGTTCTCGGC...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGATGGACGGCATGGTCATaGAAGAGATGGAGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRWTAWS*KRWSWG
Trigger: CCCCCAGCTCCATCTCTTCCATGACCATGCCGTCCA...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR GCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGCGGCGCCCGGGCCCATaGTGGACGGCATGGTCATGG +
Preference number: 4 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPRRPGP*WTAWSW
Trigger: CCATGACCATGCCGTCCAGCATGGGCCCGGGCGCCG...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGCATGTCGTGCGGTGGTaGTGGCGGTGGCCGCAGCCC +
Preference number: 4 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPHVVRW*WRWPQP
Trigger: GGGCTGCGGCCACCGCCACCACCACCGCACGACATG...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGGGGCCAGGTGGAAGCTaGGCCCCATGTCGTGCGGTG +
Preference number: 4 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPGPGGS*APCRAV
Trigger: CACCGCACGACATGGGGCCCAGCTTCCACCTGGCCC...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGCGCGCCACCATCCTCTaGCCCCTTGGCTTCCCCACC +
Preference number: 4 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPRATIL*PLGFPT
Trigger: GGTGGGGAAGCCAAGGGGCCAGAGGATGGTGGCGCG...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp GCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCTCCTGGACCCAGATGGAAGAGATGGAGCTaGGGGCCGAGAACATGGATT +
Preference number: 4 (lower is better)
Translates to: AGGQWRRGLFAGPPPGPRWKRWS*GPRTWI
Trigger: AATCCATGTTCTCGGCCCCCAGCTCCATCTCTTCCA...TCTGGGTCCAGGAGGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR TCA 90 bp ATCGCCAGGGACATTGCAACTTACCCCCACCTCCAGCATTTTTCTCCGACGTCTTGGCTCGCCGGTTCTTaGACCAGACCCGCACTCGCG +
Preference number: 4 (lower is better)
Translates to: IARDIATYPHLQHFSPTSWLAGS*TRPALA
Trigger: CGCGAGTGCGGGTCTGGTTCAAGAACCGGCGAGCCA...AGACGTCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR GCA 90 bp ATCGCCAGGGACATTGCAACTTACCCCCACCTCCAGCATTTTTCTCCGACGTCTTTGCACAGGTCCAACTaGTGGTTCCGCTCCCGCTTG +
Preference number: 4 (lower is better)
Translates to: IARDIATYPHLQHFSPTSLHRSN*WFRSRL
Trigger: CAAGCGGGAGCGGAACCAGCAGTTGGACCTGTGCAA...AGACGTCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
3UTR CAA 72 bp GGTTTGAACGCACCATCTGCGCCATCGCCAGGGACATaGCAACTTACCCCCACCTCCAGCATTTTTCTCCGA +
Preference number: 4 (lower is better)
Translates to: GLNAPSAPSPGT*QLTPTSSIFLR
Trigger: TCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGATGGCGCAGATGGTGCGTTCAAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CCA 90 bp ATCGCCAGGGACATTGCAACTTACCCCCACCTCCAGCATTTTTCTCCGACGTCTTGGTCATGGAAGAGATaGAGCTGGGGGCCGAGAACA +
Preference number: 4 (lower is better)
Translates to: IARDIATYPHLQHFSPTSWSWKR*SWGPRT
Trigger: TGTTCTCGGCCCCCAGCTCCATCTCTTCCATGACCA...AGACGTCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CCA 90 bp CCCCACCGCGCTCCTTGTCTGGCAGATCAGCGTCGGACGATTCGCTaGCGGAGTTCTCCAGCGGCTCCCGGGGGTCGGCGGCGCGGGCCA +
Preference number: 5 (lower is better)
Translates to: PHRAPCLADQRRTIR*RSSPAAPGGRRRGP
Trigger: TGGCCCGCGCCGCCGACCCCCGGGAGCCGCTGGAGAACTCCGCCAGCGAATCGTCCGACGCTGATCTGCCAGACAAGGAGCGCGGTGGGG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS CCA 90 bp CGCCGCCGCAGCCAGCACTGCCCGCGCCACCATCCTCTGGCCCCTTaGCTTCCCCACCGCGCTCCTTGTCTGGCAGATCAGCGTCGGACG +
Preference number: 5 (lower is better)
Translates to: RRRSQHCPRHHPLAP*LPHRAPCLADQRRT
Trigger: CGTCCGACGCTGATCTGCCAGACAAGGAGCGCGGTGGGGAAGCCAAGGGGCCAGAGGATGGTGGCGCGGGCAGTGCTGGCTGCGGCGGCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS-3UTR CAA 90 bp CAGGGACGCTGTAAACGGGCGCGGGCCGGAGAGCGGGTGTGCAAAGTGGGCGGGAACGACGAGTGCTGCTaGGACTTGAGCCGCAGGCTG +
Preference number: 5 (lower is better)
Translates to: QGRCKRARAGERVCKVGGNDECC*DLSRRL
Trigger: CAGCCTGCGGCTCAAGTCCAAGCAGCACTCGTCGTT...CCCGCCCACTTTGCACACCCGCTCTCCGGCCCGCGCCCGTTTACAGCGTCCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGAGGCCGAGAACATGGATaGAGAGGAGAGCGGGCTCAT +
Preference number: 5 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRGREHG*RGERAH
Trigger: ATGAGCCCGCTCTCCTCTCAATCCATGTTCTCGGCC...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp GACTCTTGCACGGGCAGGCGGACAGTGGAGAAGGGGGCTGTTCGCTGGGCCACCGAGCCGGTGAGGTTGTaGATGTTGTTGAGGCCCGAG +
Preference number: 5 (lower is better)
Translates to: DSCTGRRTVEKGAVRWATEPVRL*MLLRPE
Trigger: CTCGGGCCTCAACAACATCAACAACCTCACCGGCTC...GGTGGCCCAGCGAACAGCCCCCTTCTCCACTGTCCGCCTGCCCGTGCAAGAGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGAGAGGAGCCGGTGAGGTaGTTGATGTTGTTGAGGCCC +
Preference number: 5 (lower is better)
Translates to: VAPRSPGSTLARAGGQWREEPVR*LMLLRP
Trigger: GGGCCTCAACAACATCAACAACCTCACCGGCTCCTC...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGAGTGAGGTTGTTGATGTaGTTGAGGCCCGAGTTGGGC +
Preference number: 5 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRVRLLM*LRPELG
Trigger: GCCCAACTCGGGCCTCAACAACATCAACAACCTCAC...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGTTGTTGAGGCCCGAGTaGGGCATGCCGGGCACGGCG +
Preference number: 5 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPLLRPE*GMPGTA
Trigger: CGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAA...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp GTGGCCCCTCGCTCTCCTGGCTCGACTCTTGCACGGGCAGGCGGACAGTGGAGAAGCGGGCTCATGGAGTaGAAGAAGGTAAAGCTCTTG +
Preference number: 5 (lower is better)
Translates to: VAPRSPGSTLARAGGQWRSGLME*KKVKLL
Trigger: CAAGAGCTTTACCTTCTTCAACTCCATGAGCCCGCT...TCTCCACTGTCCGCCTGCCCGTGCAAGAGTCGAGCCAGGAGAGCGAGGGGCCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGTTGTACTGGCAAGCGTaGAGCCCCGACGCCGGACCC +
Preference number: 5 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPLYWQA*SPDAGP
Trigger: GGGTCCGGCGTCGGGGCTCAACGCTTGCCAGTACAA...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp ATTCTATACAGTCAGTCCGACATACACAGGGACGCTGTAAACGGGCGCGGGCCGTTGGCTCGCCGGTTCTaGAACCAGACCCGCACTCGC +
Preference number: 5 (lower is better)
Translates to: ILYSQSDIHRDAVNGRGPLARRF*NQTRTR
Trigger: GCGAGTGCGGGTCTGGTTCAAGAACCGGCGAGCCAA...CGGCCCGCGCCCGTTTACAGCGTCCCTGTGTATGTCGGACTGACTGTATAGAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp ATCGCCAGGGACATTGCAACTTACCCCCACCTCCAGCATTTTTCTCCGACGTCTGGCGACATGGCCGAGTaGAGCGAGGAGCCGGTGAGG +
Preference number: 5 (lower is better)
Translates to: IARDIATYPHLQHFSPTSGDMAE*SEEPVR
Trigger: CCTCACCGGCTCCTCGCTCAACTCGGCCATGTCGCC...AGACGTCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS-3UTR CAA 90 bp ATCGCCAGGGACATTGCAACTTACCCCCACCTCCAGCATTTTTCTCCGACGTCTAGGTTGTTGATGTTGTaGAGGCCCGAGTTGGGCATG +
Preference number: 5 (lower is better)
Translates to: IARDIATYPHLQHFSPTSRLLML*RPELGM
Trigger: CATGCCCAACTCGGGCCTCAACAACATCAACAACCT...AGACGTCGGAGAAAAATGCTGGAGGTGGGGGTAAGTTGCAATGTCCCTGGCGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CCA 72 bp GCTCCCGGGGGTCGGCGGCGCGGGCCAGGTGGAAGCTaGGCCCCATGTCGTGCGGTGGTGGTGGCGGTGGCC +
Preference number: 6 (lower is better)
Translates to: APGGRRRGPGGS*APCRAVVVAVA
Trigger: GGCCACCGCCACCACCACCGCACGACATGGGGCCCAGCTTCCACCTGGCCCGCGCCGCCGACCCCCGGGAGC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS GCA 72 bp GCGGCGCGGGCCAGGTGGAAGCTGGGCCCCATGTCGTaGGGTGGTGGTGGCGGTGGCCGCAGCCCCTCCGGT +
Preference number: 6 (lower is better)
Translates to: AARARWKLGPMS*GGGGGGRSPSG
Trigger: ACCGGAGGGGCTGCGGCCACCGCCACCACCACCGCACGACATGGGGCCCAGCTTCCACCTGGCCCGCGCCGC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS CAA 90 bp CCGCCGCCGCAGCCAGCACTGCCCGCGCCACCATCCTCTGGCCCCTaGGCTTCCCCACCGCGCTCCTTGTCTGGCAGATCAGCGTCGGAC +
Preference number: 6 (lower is better)
Translates to: PPPQPALPAPPSSGP*ASPPRSLSGRSASD
Trigger: GTCCGACGCTGATCTGCCAGACAAGGAGCGCGGTGGGGAAGCCAAGGGGCCAGAGGATGGTGGCGCGGGCAGTGCTGGCTGCGGCGGCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS CAA 90 bp GGCGACATGGCCGAGTTGAGCGAGGAGCCGGTGAGGTTGTTGATGTaGTTGAGGCCCGAGTTGGGCATGCCGGGCACGGCGCCCGGGCCC +
Preference number: 6 (lower is better)
Translates to: GDMAELSEEPVRLLM*LRPELGMPGTAPGP
Trigger: GGGCCCGGGCGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCATGTCGCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 90 bp GCGCCCGGCGACATGGCCGAGTTGAGCGAGGAGCCGGTGAGGTTGTaGATGTTGTTGAGGCCCGAGTTGGGCATGCCGGGCACGGCGCCC +
Preference number: 6 (lower is better)
Translates to: APGDMAELSEEPVRL*MLLRPELGMPGTAP
Trigger: GGGCGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCATGTCGCCGGGCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CCA 72 bp GCTCCTTGTCTGGCAGATCAGCGTCGGACGATTCGCTaGCGGAGTTCTCCAGCGGCTCCCGGGGGTCGGCGG +
Preference number: 6 (lower is better)
Translates to: APCLADQRRTIR*RSSPAAPGGRR
Trigger: CCGCCGACCCCCGGGAGCCGCTGGAGAACTCCGCCAGCGAATCGTCCGACGCTGATCTGCCAGACAAGGAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS CCA 72 bp AGTTGGGCATGCCGGGCACGGCGCCCGGGCCCATGCTaGACGGCATGGTCATGGAAGAGATGGAGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: SWACRARRPGPC*TAWSWKRWSWG
Trigger: CCCCCAGCTCCATCTCTTCCATGACCATGCCGTCCAGCATGGGCCCGGGCGCCGTGCCCGGCATGCCCAACT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 90 bp CCCGCGCCACCATCCTCTGGCCCCTTGGCTTCCCCACCGCGCTCCTaGTCTGGCAGATCAGCGTCGGACGATTCGCTGGCGGAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: PAPPSSGPLASPPRS*SGRSASDDSLAEFS
Trigger: GGAGAACTCCGCCAGCGAATCGTCCGACGCTGATCTGCCAGACAAGGAGCGCGGTGGGGAAGCCAAGGGGCCAGAGGATGGTGGCGCGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS CAA 90 bp CAGGCGCCCGGCGACATGGCCGAGTTGAGCGAGGAGCCGGTGAGGTaGTTGATGTTGTTGAGGCCCGAGTTGGGCATGCCGGGCACGGCG +
Preference number: 6 (lower is better)
Translates to: QAPGDMAELSEEPVR*LMLLRPELGMPGTA
Trigger: CGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCATGTCGCCGGGCGCCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 90 bp TTGAGCGAGGAGCCGGTGAGGTTGTTGATGTTGTTGAGGCCCGAGTaGGGCATGCCGGGCACGGCGCCCGGGCCCATGCTGGACGGCATG +
Preference number: 6 (lower is better)
Translates to: LSEEPVRLLMLLRPE*GMPGTAPGPMLDGM
Trigger: CATGCCGTCCAGCATGGGCCCGGGCGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 90 bp GACATGGCCGAGTTGAGCGAGGAGCCGGTGAGGTTGTTGATGTTGTaGAGGCCCGAGTTGGGCATGCCGGGCACGGCGCCCGGGCCCATG +
Preference number: 6 (lower is better)
Translates to: DMAELSEEPVRLLML*RPELGMPGTAPGPM
Trigger: CATGGGCCCGGGCGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCATGTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 72 bp CCATCCTCTGGCCCCTTGGCTTCCCCACCGCGCTCCTaGTCTGGCAGATCAGCGTCGGACGATTCGCTGGCG +
Preference number: 6 (lower is better)
Translates to: PSSGPLASPPRS*SGRSASDDSLA
Trigger: CGCCAGCGAATCGTCCGACGCTGATCTGCCAGACAAGGAGCGCGGTGGGGAAGCCAAGGGGCCAGAGGATGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021968.7
ENSMUST00000173618.2
CDS CAA 72 bp GAGTTGAGCGAGGAGCCGGTGAGGTTGTTGATGTTGTaGAGGCCCGAGTTGGGCATGCCGGGCACGGCGCCC +
Preference number: 6 (lower is better)
Translates to: ELSEEPVRLLML*RPELGMPGTAP
Trigger: GGGCGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 72 bp GCCGAGTTGAGCGAGGAGCCGGTGAGGTTGTTGATGTaGTTGAGGCCCGAGTTGGGCATGCCGGGCACGGCG +
Preference number: 6 (lower is better)
Translates to: AELSEEPVRLLM*LRPELGMPGTA
Trigger: CGCCGTGCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 72 bp GACATGGCCGAGTTGAGCGAGGAGCCGGTGAGGTTGTaGATGTTGTTGAGGCCCGAGTTGGGCATGCCGGGC +
Preference number: 6 (lower is better)
Translates to: DMAELSEEPVRL*MLLRPELGMPG
Trigger: GCCCGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCATGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS CAA 72 bp GGCGACATGGCCGAGTTGAGCGAGGAGCCGGTGAGGTaGTTGATGTTGTTGAGGCCCGAGTTGGGCATGCCG +
Preference number: 6 (lower is better)
Translates to: GDMAELSEEPVR*LMLLRPELGMP
Trigger: CGGCATGCCCAACTCGGGCCTCAACAACATCAACAACCTCACCGGCTCCTCGCTCAACTCGGCCATGTCGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7
CDS TCA 72 bp ATGGAAGAGATGGAGCTGGGGGCCGAGAACATGGATTaGGAGGAGAGCGGGCTCATGGAGTTGAAGAAGGTA +
Preference number: 6 (lower is better)
Translates to: MEEMELGAENMD*EESGLMELKKV
Trigger: TACCTTCTTCAACTCCATGAGCCCGCTCTCCTCTCAATCCATGTTCTCGGCCCCCAGCTCCATCTCTTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021968.7