Pregenerated sensors for PITHD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028669Ensembl transcript IDs: ENSMUST00000105851.9, ENSMUST00000123404.2, ENSMUST00000147458.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | ACCATGAATGAAAGCCATGAACAGAAGGAGCAGGGTCTCCAGACTCCAGCCCTGACGAATGCTGAGCAATaGCAGGAGGAGGAGCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: TMNESHEQKEQGLQTPALTNAEQ*QEEEQA Trigger: TGCTTGCTCCTCCTCCTGTCATTGCTCAGCATTCGT...CAGGGCTGGAGTCTGGAGACCCTGCTCCTTCTGTTCATGGCTTTCATTCATGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAATGAAAGCCATGAACAGAAGGAGCAGGGTCTCCAGACTCCAGCCCTGGGTTGGGACACTTGTGTCTaGTATGTGACACCAGCTAGG | + |
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Preference number: 2 (lower is better) Translates to: MNESHEQKEQGLQTPALGWDTCV*YVTPAR Trigger: CCTAGCTGGTGTCACATATCAGACACAAGTGTCCCA...ACCCAGGGCTGGAGTCTGGAGACCCTGCTCCTTCTGTTCATGGCTTTCATTCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR-3UTR CCA 90 bp | ACCATGAATGAAAGCCATGAACAGAAGGAGCAGGGTCTCCAGACTCCAGCCCTGCCCGTGGCCACAGACTaGGAAGTGAGCATTATTCAT | + |
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Preference number: 2 (lower is better) Translates to: TMNESHEQKEQGLQTPALPVATD*EVSIIH Trigger: ATGAATAATGCTCACTTCCCAGTCTGTGGCCACGGG...CAGGGCTGGAGTCTGGAGACCCTGCTCCTTCTGTTCATGGCTTTCATTCATGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR-3UTR CCA 90 bp | AACCACACAAGAAATCTGCCACAAGCAAAAAGACACATGGGATCCCGTGGCCACGTCCTTCCCAGCAGGTaGTCGCACATCTTCACTAAC | + |
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Preference number: 2 (lower is better) Translates to: NHTRNLPQAKRHMGSRGHVLPSR*SHIFTN Trigger: GTTAGTGAAGATGTGCGACCACCTGCTGGGAAGGAC...GTGGCCACGGGATCCCATGTGTCTTTTTGCTTGTGGCAGATTTCTTGTGTGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR-3UTR TCA 90 bp | AGGACAAACCACACAAGAAATCTGCCACAAGCAAAAAGACACATGGGATCCCGTAGCATTATTCATGACTaGCAGATGCCACCCAGCCTA | + |
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Preference number: 2 (lower is better) Translates to: RTNHTRNLPQAKRHMGSRSIIHD*QMPPSL Trigger: TAGGCTGGGTGGCATCTGTCAGTCATGAATAATGCT...ACGGGATCCCATGTGTCTTTTTGCTTGTGGCAGATTTCTTGTGTGGTTTGTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR-3UTR TCA 90 bp | CAGGATTCAAGTTCAATTCAGTTCCTAGTGAGATATAAGTTTCACAGCACTACCAGTGAGCATTATTCATaGCTGACAGATGCCACCCAG | + |
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Preference number: 2 (lower is better) Translates to: QDSSSIQFLVRYKFHSTTSEHYS*LTDATQ Trigger: CTGGGTGGCATCTGTCAGTCATGAATAATGCTCACT...GGTAGTGCTGTGAAACTTATATCTCACTAGGAACTGAATTGAACTTGAATCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR CCA 72 bp | CTGCAGCAACCCCGAGACAAAGCCTGGCCAAAGCTCTaGCAGGCAACTCTTGCTGGAGCATCCTCTGTCCTT | + |
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Preference number: 3 (lower is better) Translates to: LQQPRDKAWPKL*QATLAGASSVL Trigger: AAGGACAGAGGATGCTCCAGCAAGAGTTGCCTGCCAGAGCTTTGGCCAGGCTTTGTCTCGGGGTTGCTGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR TCA 72 bp | ACACCAGCTAGGCACCCTGACACGAATGCTGAGCAATaGCAGGAGGAGGAGCAAGCAGGGACGAAGTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: TPARHPDTNAEQ*QEEEQAGTKCF Trigger: GAAACACTTCGTCCCTGCTTGCTCCTCCTCCTGTCATTGCTCAGCATTCGTGTCAGGGTGCCTAGCTGGTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR TCA 72 bp | TCCAACCACCATTGTGGGACACTTGTGTCTGATATGTaGCACCAGCTAGGCACCCTGACACGAATGCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: SNHHCGTLVSDM*HQLGTLTRMLS Trigger: GCTCAGCATTCGTGTCAGGGTGCCTAGCTGGTGTCACATATCAGACACAAGTGTCCCACAATGGTGGTTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| 3UTR TCA 72 bp | CTTCCTTTCCAACCACCATTGTGGGACACTTGTGTCTaGTATGTGACACCAGCTAGGCACCCTGACACGAAT | + |
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Preference number: 3 (lower is better) Translates to: LPFQPPLWDTCV*YVTPARHPDTN Trigger: ATTCGTGTCAGGGTGCCTAGCTGGTGTCACATATCAGACACAAGTGTCCCACAATGGTGGTTGGAAAGGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR GCA 90 bp | CAACCCCGAGACAAAGCCTGGCCAAAGCTCTGGCAGGCAACTCTTGCTGGAGCAGTCGCTCCAGGTCGATaGGCAGGTACAGCCCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: QPRDKAWPKLWQATLAGAVAPGR*AGTARR Trigger: CCTACGGGCTGTACCTGCGCATCGACCTGGAGCGAC...TGCTCCAGCAAGAGTTGCCTGCCAGAGCTTTGGCCAGGCTTTGTCTCGGGGTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR GCA 90 bp | CACAGGCCAGGTTCCTGCAGCAACCCCGAGACAAAGCCTGGCCAAAGCTCTGGCCAGATGGTCACCTCATaGCGGCGAAGCTCAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: HRPGSCSNPETKPGQSSGQMVTS*RRSSVH Trigger: GTGGACTGAGCTTCGCCGGCATGAGGTGACCATCTG...GCCAGAGCTTTGGCCAGGCTTTGTCTCGGGGTTGCTGCAGGAACCTGGCCTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR CCA 90 bp | GCAGGTGGTCGCACATCTTCACTAACAGCGCATCTGAGGGAGCCCCGGCTGGCCCACTTTCAACAAACTTaGAGCGGTCGGTCCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: AGGRTSSLTAHLREPRLAHFQQT*SGRSAP Trigger: AGGAGCGGACCGACCGCTCCAAGTTTGTTGAAAGTG...GGCCAGCCGGGGCTCCCTCAGATGCGCTGTTAGTGAAGATGTGCGACCACCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR TCA 90 bp | CACAGGCCAGGTTCCTGCAGCAACCCCGAGACAAAGCCTGGCCAAAGCTCTGGCGTCTGCTGGGTTGGCTaGCGCTTCATAGTTGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: HRPGSCSNPETKPGQSSGVCWVG*RFIVAD Trigger: ATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGAC...GCCAGAGCTTTGGCCAGGCTTTGTCTCGGGGTTGCTGCAGGAACCTGGCCTGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR CCA 90 bp | GGCACCCTGACACGAATGCTGAGCAATGACAGGAGGAGGAGCAAGCAGGGACGAGGTGGTCTGCTGGGTTaGCTGACGCTTCATAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: GTLTRMLSNDRRRSKQGRGGLLG*LTLHSC Trigger: GCAACTATGAAGCGTCAGCCAACCCAGCAGACCACC...TCGTCCCTGCTTGCTCCTCCTCCTGTCATTGCTCAGCATTCGTGTCAGGGTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR GCA 90 bp | GCATCCTCTGTCCTTCCCAGCAGGTGGTCGCACATCTTCACTAACAGCGCATCTCTCTCGTTGAGGCACTaGAGTCGCTCCAGGTCGATG | + |
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Preference number: 4 (lower is better) Translates to: ASSVLPSRWSHIFTNSASLSLRH*SRSRSM Trigger: CATCGACCTGGAGCGACTGCAGTGCCTCAACGAGAG...AGATGCGCTGTTAGTGAAGATGTGCGACCACCTGCTGGGAAGGACAGAGGATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR TCA 90 bp | ACCATGAATGAAAGCCATGAACAGAAGGAGCAGGGTCTCCAGACTCCAGCCCTGTGTCTCGGTTCAGACTaGAGGTCTGCTCTGGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: TMNESHEQKEQGLQTPALCLGSD*RSALAP Trigger: GGGAGCCAGAGCAGACCTTCAGTCTGAACCGAGACA...CAGGGCTGGAGTCTGGAGACCCTGCTCCTTCTGTTCATGGCTTTCATTCATGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR TCA 90 bp | GATTCAAGTTCAATTCAGTTCCTAGTGAGATATAAGTTTCACAGCACTACCAAGGCTCCTCCCACGGCTTaGAGACGCCGCGGCCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DSSSIQFLVRYKFHSTTKAPPTA*RRRGRC Trigger: GCAGCGGCCGCGGCGTCTTCAAGCCGTGGGAGGAGC...CTTGGTAGTGCTGTGAAACTTATATCTCACTAGGAACTGAATTGAACTTGAATC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR GCA 90 bp | ACCATGAATGAAAGCCATGAACAGAAGGAGCAGGGTCTCCAGACTCCAGCCCTGTTCAGACTGAAGGTCTaGTCTGGCTCCCTTTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: TMNESHEQKEQGLQTPALFRLKV*SGSLSV Trigger: CACAGAAAGGGAGCCAGAGCAGACCTTCAGTCTGAA...CAGGGCTGGAGTCTGGAGACCCTGCTCCTTCTGTTCATGGCTTTCATTCATGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR TCA 90 bp | AACTGTGACATGCATGATCTACCTAGATCAAAAGAAAACAGGATTCAAGTTCAACCTCGCGGCTCTCGTTaGGGCACTGCAGTCGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: NCDMHDLPRSKENRIQVQPRGSR*GTAVAP Trigger: TGGAGCGACTGCAGTGCCTCAACGAGAGCCGCGAGG...TTGAACTTGAATCCTGTTTTCTTTTGATCTAGGTAGATCATGCATGTCACAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR GCA 90 bp | CAGGATTCAAGTTCAATTCAGTTCCTAGTGAGATATAAGTTTCACAGCACTACCCTCATCTCCGAGGGGTaGGAGTCATCATCCTCGCCC | + |
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Preference number: 4 (lower is better) Translates to: QDSSSIQFLVRYKFHSTTLISEG*ESSSSP Trigger: GGGCGAGGATGATGACTCGCACCCCTCGGAGATGAG...GGTAGTGCTGTGAAACTTATATCTCACTAGGAACTGAATTGAACTTGAATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR CCA 90 bp | AGGACAAACCACACAAGAAATCTGCCACAAGCAAAAAGACACATGGGATCCCGTACTGAAGGTCTGCTCTaGCTCCCTTTCTGTGTCATC | + |
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Preference number: 4 (lower is better) Translates to: RTNHTRNLPQAKRHMGSRTEGLL*LPFCVI Trigger: GATGACACAGAAAGGGAGCCAGAGCAGACCTTCAGT...ACGGGATCCCATGTGTCTTTTTGCTTGTGGCAGATTTCTTGTGTGGTTTGTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR CAA 90 bp | CTGTCCTTCCCAGCAGGTGGTCGCACATCTTCACTAACAGCGCATCTGAGGGAGCGCTCCTCCCACGGCTaGAAGACGCCGCGGCCGCTG | + |
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Preference number: 5 (lower is better) Translates to: LSFPAGGRTSSLTAHLRERSSHG*KTPRPL Trigger: CAGCGGCCGCGGCGTCTTCAAGCCGTGGGAGGAGCG...CTCCCTCAGATGCGCTGTTAGTGAAGATGTGCGACCACCTGCTGGGAAGGACAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS CCA 90 bp | GCACCCGGTGGTCTGCTGGGTTGGCTGACGCTTCATAGTTGCAGATaGTCACCTCATGCCGGCGAAGCTCAGTCCACTCTCCCCGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: APGGLLGWLTLHSCR*SPHAGEAQSTLPAG Trigger: GCCTGCGGGGAGAGTGGACTGAGCTTCGCCGGCATGAGGTGACCATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGACCACCGGGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105851.9 ENSMUST00000147458.8 |
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| CDS TCA 90 bp | TGTCTGCGGGGTGACCTGATGCACCCGGTGGTCTGCTGGGTTGGCTaGCGCTTCATAGTTGCAGATGGTCACCTCATGCCGGCGAAGCTC | + |
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Preference number: 5 (lower is better) Translates to: CLRGDLMHPVVCWVG*RFIVADGHLMPAKL Trigger: GAGCTTCGCCGGCATGAGGTGACCATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGACCACCGGGTGCATCAGGTCACCCCGCAGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000105851.9 ENSMUST00000147458.8 |
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| CDS GCA 90 bp | CCTGATGCACCCGGTGGTCTGCTGGGTTGGCTGACGCTTCATAGTTaGAGATGGTCACCTCATGCCGGCGAAGCTCAGTCCACTCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: PDAPGGLLGWLTLHS*RWSPHAGEAQSTLP Trigger: GGGGAGAGTGGACTGAGCTTCGCCGGCATGAGGTGACCATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGACCACCGGGTGCATCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105851.9 ENSMUST00000147458.8 |
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| CDS-3UTR CAA 90 bp | GGTGAGGCGGTTTCCACAGGCCAGGTTCCTGCAGCAACCCCGAGACAAAGCCTGTCACTTTCAACAAACTaGGAGCGGTCGGTCCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: GEAVSTGQVPAATPRQSLSLSTN*ERSVRS Trigger: GGAGCGGACCGACCGCTCCAAGTTTGTTGAAAGTGA...CAGGCTTTGTCTCGGGGTTGCTGCAGGAACCTGGCCTGTGGAAACCGCCTCACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR CAA 90 bp | ACAAACCACACAAGAAATCTGCCACAAGCAAAAAGACACATGGGATCCCGTGGCCCCTCGCGGCTCTCGTaGAGGCACTGCAGTCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: TNHTRNLPQAKRHMGSRGPSRLS*RHCSRS Trigger: GGAGCGACTGCAGTGCCTCAACGAGAGCCGCGAGGG...GCCACGGGATCCCATGTGTCTTTTTGCTTGTGGCAGATTTCTTGTGTGGTTTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS-3UTR CAA 90 bp | AACCACACAAGAAATCTGCCACAAGCAAAAAGACACATGGGATCCCGTGGCCACATGACGCCTTTCAGCTaGACATTGCCCGTAAACGGA | + |
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Preference number: 5 (lower is better) Translates to: NHTRNLPQAKRHMGSRGHMTPFS*TLPVNG Trigger: TCCGTTTACGGGCAATGTCAAGCTGAAAGGCGTCAT...GTGGCCACGGGATCCCATGTGTCTTTTTGCTTGTGGCAGATTTCTTGTGTGGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS TCA 90 bp | GTTCAGACTGAAGGTCTGCTCTGGCTCCCTTTCTGTGTCATCAAATaGCATCTGTGGAATGTTCTTGTACAGTCTCATCTCCGAGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: VQTEGLLWLPFCVIK*HLWNVLVQSHLRGV Trigger: CACCCCTCGGAGATGAGACTGTACAAGAACATTCCACAGATGTCATTTGATGACACAGAAAGGGAGCCAGAGCAGACCTTCAGTCTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000105851.9 ENSMUST00000123404.2 ENSMUST00000147458.8 |
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| CDS-3UTR CAA 90 bp | ATGAACAGAAGGAGCAGGGTCTCCAGACTCCAGCCCTGGGTTTATAACATGAGTATCTGTGGAATGTTCTaGTACAGTCTCATCTCCGAG | + |
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Preference number: 5 (lower is better) Translates to: MNRRSRVSRLQPWVYNMSICGMF*YSLISE Trigger: CTCGGAGATGAGACTGTACAAGAACATTCCACAGAT...ACTCATGTTATAAACCCAGGGCTGGAGTCTGGAGACCCTGCTCCTTCTGTTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS GCA 90 bp | GCATATTCTAATTCTCCTGTAATGTCTCGGTTCAGACTGAAGGTCTaGTCTGGCTCCCTTTCTGTGTCATCAAATGACATCTGTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: AYSNSPVMSRFRLKV*SGSLSVSSNDICGM Trigger: CATTCCACAGATGTCATTTGATGACACAGAAAGGGAGCCAGAGCAGACCTTCAGTCTGAACCGAGACATTACAGGAGAATTAGAATATGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105851.9 ENSMUST00000123404.2 ENSMUST00000147458.8 |
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| CDS GCA 72 bp | CCGCGGCCGCTGCCCTCGCGGCTCTCGTTGAGGCACTaGAGTCGCTCCAGGTCGATGCGCAGGTACAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: PRPLPSRLSLRH*SRSRSMRRYSP Trigger: CGGGCTGTACCTGCGCATCGACCTGGAGCGACTGCAGTGCCTCAACGAGAGCCGCGAGGGCAGCGGCCGCGG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS TCA 72 bp | CAAACTTGGAGCGGTCGGTCCGCTCCTCCCACGGCTTaGAGACGCCGCGGCCGCTGCCCTCGCGGCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: QTWSGRSAPPTA*RRRGRCPRGSR Trigger: ACGAGAGCCGCGAGGGCAGCGGCCGCGGCGTCTTCAAGCCGTGGGAGGAGCGGACCGACCGCTCCAAGTTTG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS CAA 72 bp | ACAAACTTGGAGCGGTCGGTCCGCTCCTCCCACGGCTaGAAGACGCCGCGGCCGCTGCCCTCGCGGCTCTCG | + |
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Preference number: 6 (lower is better) Translates to: TNLERSVRSSHG*KTPRPLPSRLS Trigger: CGAGAGCCGCGAGGGCAGCGGCCGCGGCGTCTTCAAGCCGTGGGAGGAGCGGACCGACCGCTCCAAGTTTGT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS CAA 90 bp | TCCCACGGCTTGAAGACGCCGCGGCCGCTGCCCTCGCGGCTCTCGTaGAGGCACTGCAGTCGCTCCAGGTCGATGCGCAGGTACAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: SHGLKTPRPLPSRLS*RHCSRSRSMRRYSP Trigger: CGGGCTGTACCTGCGCATCGACCTGGAGCGACTGCAGTGCCTCAACGAGAGCCGCGAGGGCAGCGGCCGCGGCGTCTTCAAGCCGTGGGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS CAA 90 bp | TCACTTTCAACAAACTTGGAGCGGTCGGTCCGCTCCTCCCACGGCTaGAAGACGCCGCGGCCGCTGCCCTCGCGGCTCTCGTTGAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: SLSTNLERSVRSSHG*KTPRPLPSRLSLRH Trigger: GTGCCTCAACGAGAGCCGCGAGGGCAGCGGCCGCGGCGTCTTCAAGCCGTGGGAGGAGCGGACCGACCGCTCCAAGTTTGTTGAAAGTGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS GCA 72 bp | CCCGGTGGTCTGCTGGGTTGGCTGACGCTTCATAGTTaGAGATGGTCACCTCATGCCGGCGAAGCTCAGTCC | + |
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Preference number: 6 (lower is better) Translates to: PGGLLGWLTLHS*RWSPHAGEAQS Trigger: GGACTGAGCTTCGCCGGCATGAGGTGACCATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGACCACCGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105851.9 ENSMUST00000147458.8 |
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| CDS TCA 72 bp | GGTGACCTGATGCACCCGGTGGTCTGCTGGGTTGGCTaGCGCTTCATAGTTGCAGATGGTCACCTCATGCCG | + |
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Preference number: 6 (lower is better) Translates to: GDLMHPVVCWVG*RFIVADGHLMP Trigger: CGGCATGAGGTGACCATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGACCACCGGGTGCATCAGGTCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105851.9 ENSMUST00000147458.8 |
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| CDS CCA 72 bp | GGTCTGCTGGGTTGGCTGACGCTTCATAGTTGCAGATaGTCACCTCATGCCGGCGAAGCTCAGTCCACTCTC | + |
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Preference number: 6 (lower is better) Translates to: GLLGWLTLHSCR*SPHAGEAQSTL Trigger: GAGAGTGGACTGAGCTTCGCCGGCATGAGGTGACCATCTGCAACTATGAAGCGTCAGCCAACCCAGCAGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000105851.9 ENSMUST00000147458.8 |
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| CDS GCA 72 bp | TGTGGAATGTTCTTGTACAGTCTCATCTCCGAGGGGTaGGAGTCATCATCCTCGCCCATTATGATGACGCCT | + |
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Preference number: 6 (lower is better) Translates to: CGMFLYSLISEG*ESSSSPIMMTP Trigger: AGGCGTCATCATAATGGGCGAGGATGATGACTCGCACCCCTCGGAGATGAGACTGTACAAGAACATTCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS CAA 72 bp | TCCTCGCCCATTATGATGACGCCTTTCAGCTTGACATaGCCCGTAAACGGAATATTAAACAGGAGCTCTTCG | + |
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Preference number: 6 (lower is better) Translates to: SSPIMMTPFSLT*PVNGILNRSSS Trigger: CGAAGAGCTCCTGTTTAATATTCCGTTTACGGGCAATGTCAAGCTGAAAGGCGTCATCATAATGGGCGAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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| CDS GCA 72 bp | AATTCTCCTGTAATGTCTCGGTTCAGACTGAAGGTCTaGTCTGGCTCCCTTTCTGTGTCATCAAATGACATC | + |
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Preference number: 6 (lower is better) Translates to: NSPVMSRFRLKV*SGSLSVSSNDI Trigger: GATGTCATTTGATGACACAGAAAGGGAGCCAGAGCAGACCTTCAGTCTGAACCGAGACATTACAGGAGAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000105851.9 ENSMUST00000123404.2 ENSMUST00000147458.8 |
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| CDS CAA 72 bp | TCATCATCCTCGCCCATTATGATGACGCCTTTCAGCTaGACATTGCCCGTAAACGGAATATTAAACAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SSSSPIMMTPFS*TLPVNGILNRS Trigger: GCTCCTGTTTAATATTCCGTTTACGGGCAATGTCAAGCTGAAAGGCGTCATCATAATGGGCGAGGATGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105851.9 |
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