RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PISD (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023452

Ensembl transcript IDs: ENSMUST00000061895.16, ENSMUST00000071829.12, ENSMUST00000120591.8, ENSMUST00000135248.2, ENSMUST00000142779.8, ENSMUST00000142957.6, ENSMUST00000197787.5, ENSMUST00000200390.5, ENSMUST00000202283.5

Found 322 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATACGGGCCGTGCCTGAGGCTTCAGCTTACGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCAGGTCCTCCACTGCAGCCTCAGTCA +
Preference number: 1 (lower is better)
Translates to: IRAVPEASAYAGRTR*GCGSGAGPPLQPQS
Trigger: TGACTGAGGCTGCAGTGGAGGACCTGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 90 bp GGTTCACTGACATCAGGGAACCTGGGAAGTGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGG +
Preference number: 1 (lower is better)
Translates to: GSLTSGNLGSGADVR*SSQWGSGSSGSLLG
Trigger: CCCCAGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGGTTCCCTGATGTCAGTGAACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
ENSMUST00000202283.5
3UTR GCA 90 bp GCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTaGCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTGAACTCCCC +
Preference number: 1 (lower is better)
Translates to: ADLLPCLQPEVEVLG*LEDEHDGGAQVELP
Trigger: GGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 90 bp CAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTaGGGCTCCGCTGAAGACCCTCATGCTCCTGTGTGGAAAGATCCT +
Preference number: 1 (lower is better)
Translates to: QSYKVSPAVPLTQTA*GSAEDPHAPVWKDP
Trigger: AGGATCTTTCCACACAGGAGCATGAGGGTCTTCAGCGGAGCCTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 90 bp CACCTCAGAGTTCTTCACCTGCCCAAAGGTGAGGATCTTGCCATCTaGTGGGCTGGTCACACAGTGCAAGCCACATACGGGCCGTGCCTG +
Preference number: 1 (lower is better)
Translates to: HLRVLHLPKGEDLAI*WAGHTVQATYGPCL
Trigger: CAGGCACGGCCCGTATGTGGCTTGCACTGTGTGACCAGCCCATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR GCA 90 bp GGACTAGAGGGAGCCCAGTGCTTCCCCAAAGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCTCGAAGATGAG +
Preference number: 1 (lower is better)
Translates to: GLEGAQCFPKADLLP*LQPEVEVLGCLEDE
Trigger: CTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 90 bp GGCTGTAGACTGGCCTCCGGAGCCAGTAAGGAAGTTCTACTTGGTTaGGGCGACCACAGGCACGTGACAGCAAACGCGTTGGCACAGATT +
Preference number: 1 (lower is better)
Translates to: GCRLASGASKEVLLG*GDHRHVTANALAQI
Trigger: AATCTGTGCCAACGCGTTTGCTGTCACGTGCCTGTGGTCGCCTCAACCAAGTAGAACTTCCTTACTGGCTCCGGAGGCCAGTCTACAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR GCA 90 bp AAGATCCTTTGGCAGCCACAACCGAGAGGACTAGAGGGAGCCCAGTaGTTCCCCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTT +
Preference number: 1 (lower is better)
Translates to: KILWQPQPRGLEGAQ*FPKADLLPCLQPEV
Trigger: AACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGCCAAAGGATCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 90 bp CCGGAAGAACTCGCTGAGGTTGCGGTAGTGGTGCAGGTCCTCCACTaGAGCCTCAGTCATGTTCACCCCAAAGGTCCAGATATACAGGCT +
Preference number: 1 (lower is better)
Translates to: PEELAEVAVVVQVLH*SLSHVHPKGPDIQA
Trigger: AGCCTGTATATCTGGACCTTTGGGGTGAACATGACTGAGGCTGCAGTGGAGGACCTGCACCACTACCGCAACCTCAGCGAGTTCTTCCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR CCA 90 bp ACTCCCCCAGGGGCTCACCCTTGCGCATGGGAATGCCCTCCTTGTTaGCATGTGTTACAAAGCTCAGGTCATTGTAGGAGCCCTTGCTGT +
Preference number: 1 (lower is better)
Translates to: TPPGAHPCAWECPPC*HVLQSSGHCRSPCC
Trigger: ACAGCAAGGGCTCCTACAATGACCTGAGCTTTGTAACACATGCCAACAAGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 90 bp CAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTaGATCCACAGTCTGTGCCCAGCAGGCACCTCACCCTGTGCACAT +
Preference number: 1 (lower is better)
Translates to: QKAVMKAMWPALGRQ*IHSLCPAGTSPCAH
Trigger: ATGTGCACAGGGTGAGGTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 90 bp CAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTaGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCA +
Preference number: 1 (lower is better)
Translates to: QTGEIGEQKAVMKAM*PALGRQWIHSLCPA
Trigger: TGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 90 bp GAGCCAGTAAGGAAGTTCTACTTGGTTGAGGCGACCACAGGCACGTaGCAGCAAACGCGTTGGCACAGATTTATACAGGGACACCTCCCA +
Preference number: 1 (lower is better)
Translates to: EPVRKFYLVEATTGT*QQTRWHRFIQGHLP
Trigger: TGGGAGGTGTCCCTGTATAAATCTGTGCCAACGCGTTTGCTGTCACGTGCCTGTGGTCGCCTCAACCAAGTAGAACTTCCTTACTGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 90 bp CTCAGTCATGTTCACCCCAAAGGTCCAGATATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGGAAGTTCTACTTGGTTGAGGCGACC +
Preference number: 1 (lower is better)
Translates to: LSHVHPKGPDIQAVD*PPEPVRKFYLVEAT
Trigger: GGTCGCCTCAACCAAGTAGAACTTCCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTATATCTGGACCTTTGGGGTGAACATGACTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR GCA 90 bp CCTTGTTGGCATGTGTTACAAAGCTCAGGTCATTGTAGGAGCCCTTaGTGTACCTGGGGCTGTTTGTGTGCAGGTCTCGGTCAAAGTGGA +
Preference number: 1 (lower is better)
Translates to: PCWHVLQSSGHCRSP*CTWGCLCAGLGQSG
Trigger: TCCACTTTGACCGAGACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATGACCTGAGCTTTGTAACACATGCCAACAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 90 bp TCCTGCAGGAGAAATTCATGGCATTCCCAAGATCGACATGAACTCTaGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGT +
Preference number: 1 (lower is better)
Translates to: SCRRNSWHSQDRHEL*SCPYHWVPHGLHTC
Trigger: ACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCTCCTGCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 90 bp AGTCTCCAGTTAGGACTACACGCTCATTGTGACAAAAGAGCTCTTTaGTCCATCGGGCCATGCCAGGGTTCACTGACATCAGGGAACCTG +
Preference number: 1 (lower is better)
Translates to: SLQLGLHAHCDKRAL*SIGPCQGSLTSGNL
Trigger: CAGGTTCCCTGATGTCAGTGAACCCTGGCATGGCCCGATGGATCAAAGAGCTCTTTTGTCACAATGAGCGTGTAGTCCTAACTGGAGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
ENSMUST00000202283.5
3UTR CCA 90 bp CCTGCCCTTTCACTCCAGACTCTACCAGACAAGCCAGTAATTAATTaGTTTTGCCTACCAGCAAAAGGATTCAGCCAGCTTCTTAGAGCC +
Preference number: 1 (lower is better)
Translates to: PALSLQTLPDKPVIN*FCLPAKGFSQLLRA
Trigger: GGCTCTAAGAAGCTGGCTGAATCCTTTTGCTGGTAGGCAAAACCAATTAATTACTGGCTTGTCTGGTAGAGTCTGGAGTGAAAGGGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 90 bp CTTTCACTCCAGACTCTACCAGACAAGCCAGTAATTAATTGGTTTTaGCTACCAGCAAAAGGATTCAGCCAGCTTCTTAGAGCCTACAAA +
Preference number: 1 (lower is better)
Translates to: LSLQTLPDKPVINWF*LPAKGFSQLLRAYK
Trigger: TTTGTAGGCTCTAAGAAGCTGGCTGAATCCTTTTGCTGGTAGGCAAAACCAATTAATTACTGGCTTGTCTGGTAGAGTCTGGAGTGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 90 bp ATACAGTTGAAAAAGTTAAGTGATTTCTCCTGCAGGAGAAATTCATaGCATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCAC +
Preference number: 1 (lower is better)
Translates to: IQLKKLSDFSCRRNS*HSQDRHELWSCPYH
Trigger: GTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCTCCTGCAGGAGAAATCACTTAACTTTTTCAACTGTAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 90 bp AGCACGATGGTGGAGCCCAGGTTGAACTCCCCCAGGGGCTCACCCTaGCGCATGGGAATGCCCTCGGATAGAGCCCACATTGGTGGCTCC +
Preference number: 2 (lower is better)
Translates to: STMVEPRLNSPRGSP*RMGMPSDRAHIGGS
Trigger: GGAGCCACCAATGTGGGCTCTATCCGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp GTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGTGGGTGCCTCGAAGATaGGCACGATGGTGGAGCCCA +
Preference number: 2 (lower is better)
Translates to: VPSRHLTLCTLREPCDGRWVPRR*ARWWSP
Trigger: TGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCA...CCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp GCAGCCACAACCGAGAGGACTAGAGGGAGCCCAGTGCTTCCCCAAAGCGGATCTCATACGGGCCGTGCCTaGGGCTTCAGCTTACGCCGG +
Preference number: 2 (lower is better)
Translates to: AATTERTRGSPVLPQSGSHTGRA*GFSLRR
Trigger: CCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTATG...AGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR GCA 90 bp GCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCAGGTCAGCCCCGCAGTaGCCCTCACCCAGACAGCCT +
Preference number: 2 (lower is better)
Translates to: AMWPALGRQWIHSLCPAGRSAPQ*PSPRQP
Trigger: AGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCT...GCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 90 bp AAGTCCTTGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCACCCTTGCGCATGGGAATGCCCTCC +
Preference number: 2 (lower is better)
Translates to: KSLGASKMSTMVEPR*NSPRGSPLRMGMPS
Trigger: GGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR CAA 90 bp AAGTCCTTGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCACCCTTGCGCATGGGAATGCCCTCG +
Preference number: 2 (lower is better)
Translates to: KSLGASKMSTMVEPR*NSPRGSPLRMGMPS
Trigger: CGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp GGAGTGGAAGCAGTGGTAGTCTCCTGGGGCCAGGTAGATGACACAGTGGTACAGAGGTCAGCCCCGCAGTaGCCCTCACCCAGACAGCCT +
Preference number: 2 (lower is better)
Translates to: GVEAVVVSWGQVDDTVVQRSAPQ*PSPRQP
Trigger: AGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCT...CTGTACCACTGTGTCATCTACCTGGCCCCAGGAGACTACCACTGCTTCCACTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp GTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGGCCAGGTAGATGACACAGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 2 (lower is better)
Translates to: VSGGVEAVVVSWGQVDDTAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...TGTGTCATCTACCTGGCCCCAGGAGACTACCACTGCTTCCACTCCCCCACTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR-3UTR GCA 90 bp ACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGACCCAGAACCAGGTCAGCCCCGCAGTaGCCCTCACCCAGACAGCCT +
Preference number: 2 (lower is better)
Translates to: THPYSEKGSRSCPERPRTRSAPQ*PSPRQP
Trigger: AGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCT...GGTTCTGGGTCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp CTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGAGGTCAGCCCCGCAGTaGCCCTCACCCAGACAGCCT +
Preference number: 2 (lower is better)
Translates to: LVLSLPLGSPWPAYLFSRRSAPQ*PSPRQP
Trigger: AGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCT...CCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 90 bp AGCACGATGGTGGAGCCCAGGTTGAACTCCCCCAGGGGCTCACCCTaGCGCATGGGAATGCCCTCCTTGTTGGCATGTGTTACAAAGCTC +
Preference number: 2 (lower is better)
Translates to: STMVEPRLNSPRGSP*RMGMPSLLACVTKL
Trigger: GAGCTTTGTAACACATGCCAACAAGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR CAA 90 bp GGGGCTCACCCTTGCGCATGGGAATGCCCTCGGATAGAGCCCACATaGGTGGCTCCCACTGCTGTCAACGAGAAGAACCCATGTTTCCAG +
Preference number: 2 (lower is better)
Translates to: GAHPCAWECPRIEPT*VAPTAVNEKNPCFQ
Trigger: CTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTGGGCTCTATCCGAGGGCATTCCCATGCGCAAGGGTGAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp ATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATATGGTGGAGCCCAGGTTaGACTCCCCCAGGGGCTCAC +
Preference number: 2 (lower is better)
Translates to: IDMNSGLVPTTGFPMACIWWSPG*TPPGAH
Trigger: GTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCA...TATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp CCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCAGGGACACCTCCCAGTaGCTAGCAAGTTTGGGCGGG +
Preference number: 2 (lower is better)
Translates to: PKRIFCPAFSLKLKSLGARDTSQ*LASLGG
Trigger: CCCGCCCAAACTTGCTAGTCACTGGGAGGTGTCCCT...GGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR TCA 90 bp TCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCGCGACCACAGGCACGTaGCAGCAAACGCGTTGGCAC +
Preference number: 2 (lower is better)
Translates to: SQDRHELWSCPYHWVPHGATTGT*QQTRWH
Trigger: GTGCCAACGCGTTTGCTGTCACGTGCCTGTGGTCGC...GCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR GCA 90 bp GTAGATGACACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGGTTTCTCCAGGGGCTCACCCTTaGGCATGGGAATGCCCTCGG +
Preference number: 2 (lower is better)
Translates to: VDDTVVQLIPFPGDQLVSPGAHP*AWECPR
Trigger: CCGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGG...AGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCATCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
3UTR CAA 90 bp AGTGCTTCCCCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCC +
Preference number: 2 (lower is better)
Translates to: SASPKRIFCPAFSLK*KSLGASKMSTMVEP
Trigger: GGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp TCTTTGATCCATCGGGCCATGCCAGGGTTCACTGACATCAGGGAACCTGGGAAGTGGGTGCCTCGAAGATaGGCACGATGGTGGAGCCCA +
Preference number: 2 (lower is better)
Translates to: SLIHRAMPGFTDIREPGKWVPRR*ARWWSP
Trigger: TGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCA...CTTCCCAGGTTCCCTGATGTCAGTGAACCCTGGCATGGCCCGATGGATCAAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp GAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTCACCCAGACAGCCTaGGGCTCCGCTGAAGACCCT +
Preference number: 2 (lower is better)
Translates to: ELWSCPYHWVPHGLHTCFLTQTA*GSAEDP
Trigger: AGGGTCTTCAGCGGAGCCTCAGGCTGTCTGGGTGAG...AAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp CTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTACTCACCCAGACAGCCTaGGGCTCCGCTGAAGACCCT +
Preference number: 2 (lower is better)
Translates to: LWSCPYHWVPHGLHTCFLLTQTA*GSAEDP
Trigger: AGGGTCTTCAGCGGAGCCTCAGGCTGTCTGGGTGAG...TAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp CTGTACCTGGGGCTGTTTGTGTGCAGGTCTCGGTCAAAGTGGATACGGATAGAGCTCACCCAGACAGCCTaGGGCTCCGCTGAAGACCCT +
Preference number: 2 (lower is better)
Translates to: LYLGLFVCRSRSKWIRIELTQTA*GSAEDP
Trigger: AGGGTCTTCAGCGGAGCCTCAGGCTGTCTGGGTGAG...CTCTATCCGTATCCACTTTGACCGAGACCTGCACACAAACAGCCCCAGGTACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR GCA 90 bp CTAGAGGGTGTGGTAGTACACAGCCAGGAGTTAGGGGTGGGAGGCTCTGGCTTGCTAGAGGGAGCCCAGTaGTTCCCCAAAGCGGATCTT +
Preference number: 2 (lower is better)
Translates to: LEGVVVHSQELGVGGSGLLEGAQ*FPKADL
Trigger: AAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAG...CAAGCCAGAGCCTCCCACCCCTAACTCCTGGCTGTGTACTACCACACCCTCTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp GTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGGCCAGGTAGATGACACAGTGCAGGTCCTCCACTaGAGCCTCAGTCATGTTCAC +
Preference number: 2 (lower is better)
Translates to: VSGGVEAVVVSWGQVDDTVQVLH*SLSHVH
Trigger: GTGAACATGACTGAGGCTGCAGTGGAGGACCTGCAC...TGTGTCATCTACCTGGCCCCAGGAGACTACCACTGCTTCCACTCCCCCACTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR-3UTR CCA 90 bp CAGTCTGTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGCTCTAGGAAGACAGTaGATCCACAGTCTGTGCCCA +
Preference number: 2 (lower is better)
Translates to: QSVPSRHLTLCTLREPCDALGRQ*IHSLCP
Trigger: TGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGC...GTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCACAGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 90 bp CCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTGAAC +
Preference number: 2 (lower is better)
Translates to: PKRIFCPAFSLKLKS*GASKMSTMVEPRLN
Trigger: GTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 90 bp ACCTGCTCCACCTCAGAGTTCTTCACCTGCCCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTCACACAGTGCAAGCCACATACGGGC +
Preference number: 2 (lower is better)
Translates to: TCSTSEFFTCPKVRI*PSDGLVTQCKPHTG
Trigger: GCCCGTATGTGGCTTGCACTGTGTGACCAGCCCATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGAGGTGGAGCAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR TCA 90 bp GGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGACTCACCCAGACAGCCTaGGGCTCCGCTGAAGACCCT +
Preference number: 2 (lower is better)
Translates to: GEIGEQKAVMKAMWPALGLTQTA*GSAEDP
Trigger: AGGGTCTTCAGCGGAGCCTCAGGCTGTCTGGGTGAG...TCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp ATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGCCAGGGGCTCACCCTTaGGCATGGGAATGCCCTCCT +
Preference number: 2 (lower is better)
Translates to: IGEQKAVMKAMWPALGRQPGAHP*AWECPP
Trigger: AGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGG...CTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR-3UTR GCA 90 bp AGAGGACTAGAGGGAGCCCAGTGCTTCCCCAAAGCGGATCTTCTGCCCTGCCTTGTTGAAGTCCTTGGGTaGCTCGAAGATGAGCACGAT +
Preference number: 2 (lower is better)
Translates to: RGLEGAQCFPKADLLPCLVEVLG*LEDEHD
Trigger: ATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAAC...AAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp GTACTGACCTCTATACCCTCTGCCTCCAACACAGTCCCTAGACCAATAGCAGCATGGATCCACAGTCTGTaGCCAGCAGGCACCTCACCC +
Preference number: 2 (lower is better)
Translates to: VLTSIPSASNTVPRPIAAWIHSL*PAGTSP
Trigger: GGGTGAGGTGCCTGCTGGGCACAGACTGTGGATCCA...TGCTGCTATTGGTCTAGGGACTGTGTTGGAGGCAGAGGGTATAGAGGTCAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp TCTTTGATCCATCGGGCCATGCCAGGGTTCACTGACATCAGGGAACCTGGGAAGGTGCAGGTCCTCCACTaGAGCCTCAGTCATGTTCAC +
Preference number: 2 (lower is better)
Translates to: SLIHRAMPGFTDIREPGKVQVLH*SLSHVH
Trigger: GTGAACATGACTGAGGCTGCAGTGGAGGACCTGCAC...CTTCCCAGGTTCCCTGATGTCAGTGAACCCTGGCATGGCCCGATGGATCAAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR-3UTR CCA 90 bp CTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGAGCCCTTGCTGTACCTaGGGCTGTTTGTGTGCAGGT +
Preference number: 2 (lower is better)
Translates to: LVLSLPLGSPWPAYLFSRSPCCT*GCLCAG
Trigger: ACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCT...CCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR TCA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATATGGTGGAGCCCAGGTTaGACTCCCCCAGGGGCTCAC +
Preference number: 2 (lower is better)
Translates to: KVYIISHCPQKTLAEPRIWWSPG*TPPGAH
Trigger: GTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCA...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp TCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAA +
Preference number: 2 (lower is better)
Translates to: SQDRHELWSCPYHWVPHGADLLP*LQPEVE
Trigger: TTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGC...GCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp TCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGATCCACAGTCTGTaGCCAGCAGGCACCTCACCC +
Preference number: 2 (lower is better)
Translates to: SRKQTGEIGEQKAVMKAMWIHSL*PAGTSP
Trigger: GGGTGAGGTGCCTGCTGGGCACAGACTGTGGATCCA...CATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp CCAGGGTTCACTGACATCAGGGAACCTGGGAAGTGGCGCCGATGTGAGATGGTCTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 2 (lower is better)
Translates to: PGFTDIREPGKWRRCEMVSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...GACCATCTCACATCGGCGCCACTTCCCAGGTTCCCTGATGTCAGTGAACCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR-3UTR CCA 90 bp CTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 2 (lower is better)
Translates to: LWSCPYHWVPHGLHTCFLIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...TAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR TCA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCTGGGTGCCTCGAAGATaGGCACGATGGTGGAGCCCA +
Preference number: 2 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPWVPRR*ARWWSP
Trigger: TGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCA...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp ATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACAGAAAGCAGACGGGTaGAATTGGGGAGCAGAAAGC +
Preference number: 2 (lower is better)
Translates to: IDMNSGLVPTTGFPMACIQKADG*NWGAES
Trigger: GCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTG...TATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp TCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCGTTATGAAGGCCATGTaGCCTGCTCTAGGAAGACAG +
Preference number: 2 (lower is better)
Translates to: SQDRHELWSCPYHWVPHGVMKAM*PALGRQ
Trigger: CTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAAC...GCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 90 bp TTTGTGTGCAGGTCTCGGTCAAAGTGGATACGGATAGAGCCCACATaGGTGGCTCCCACTGCTGTCAACGAGAAGAACCCATGTTTCCAG +
Preference number: 2 (lower is better)
Translates to: FVCRSRSKWIRIEPT*VAPTAVNEKNPCFQ
Trigger: CTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTGGGCTCTATCCGTATCCACTTTGACCGAGACCTGCACACAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR TCA 90 bp GGGCCTCCACCTGCCCTTTCACTCCAGACTCTACCAGACAAGCCAGTAATTAATAGCAGAAAGCAGTTATaGAGGCCATGTGGCCTGCTC +
Preference number: 2 (lower is better)
Translates to: GPPPALSLQTLPDKPVINSRKQL*RPCGLL
Trigger: GAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCT...ATTAATTACTGGCTTGTCTGGTAGAGTCTGGAGTGAAAGGGCAGGTGGAGGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp CATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATAGCAGAAAGCAGTTATaGAGGCCATGTGGCCTGCTC +
Preference number: 2 (lower is better)
Translates to: HSQDRHELWSCPYHWVPHSRKQL*RPCGLL
Trigger: GAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCT...ATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp CATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATCAGAAAGCAGACGGGTaGAATTGGGGAGCAGAAAGC +
Preference number: 2 (lower is better)
Translates to: HSQDRHELWSCPYHWVPHQKADG*NWGAES
Trigger: GCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTG...ATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp GGGCCTCCACCTGCCCTTTCACTCCAGACTCTACCAGACAAGCCAGTAATTAATCAGAAAGCAGACGGGTaGAATTGGGGAGCAGAAAGC +
Preference number: 2 (lower is better)
Translates to: GPPPALSLQTLPDKPVINQKADG*NWGAES
Trigger: GCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTG...ATTAATTACTGGCTTGTCTGGTAGAGTCTGGAGTGAAAGGGCAGGTGGAGGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp AAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCTCGGAATGCCCTCCTTGTTaGCATGTGTTACAAAGCTCA +
Preference number: 2 (lower is better)
Translates to: KRIFCPAFSLKLKSLGASECPPC*HVLQSS
Trigger: TGAGCTTTGTAACACATGCCAACAAGGAGGGCATTC...CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR-3UTR CCA 90 bp ATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATAGTTATGAAGGCCATGTaGCCTGCTCTAGGAAGACAG +
Preference number: 2 (lower is better)
Translates to: IDMNSGLVPTTGFPMACIVMKAM*PALGRQ
Trigger: CTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAAC...TATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGATTGAGAGAGCCCTGTaGCGGGAGGGGTCACAGCTA +
Preference number: 2 (lower is better)
Translates to: EPTKVYIISHCPQKTLAEIERAL*REGSQL
Trigger: TAGCTGTGACCCCTCCCGTCACAGGGCTCTCTCAAT...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGAGGTCAGCCCCGCAGTaGCCCTCACCCAGACAGCCT +
Preference number: 2 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLRSAPQ*PSPRQP
Trigger: AGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCT...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp TTTTCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCAGCAGAAAGCAGTTATaGAGGCCATGTGGCCTGCTC +
Preference number: 2 (lower is better)
Translates to: FSRKQTGEIGEQKAVMKASRKQL*RPCGLL
Trigger: GAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCT...GGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp TGCAGGAGAAATTCATGGCATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAA +
Preference number: 2 (lower is better)
Translates to: CRRNSWHSQDRHELWSCPADLLP*LQPEVE
Trigger: TTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGC...GGGACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCTCCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGAGATGGTCCAGTCAGTaGGGGAGTGGAAGCAGTGGT +
Preference number: 2 (lower is better)
Translates to: EPTKVYIISHCPQKTLAERWSSQ*GSGSSG
Trigger: ACCACTGCTTCCACTCCCCCACTGACTGGACCATCT...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGGCAGGGCCTCCACCTaGCCTTTCACTCCAGACTCT +
Preference number: 2 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLGRAST*PFTPDS
Trigger: AGAGTCTGGAGTGAAAGGGCAGGTGGAGGCCCTGCC...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp CACATTGGTGGCTCCCACTGCTGTCAACGAGAAGAACCCATGTTTCCAGTCTCCAGGGGTGGGAGGCTCTaGCTTGTACAAAAATTTAAA +
Preference number: 2 (lower is better)
Translates to: HIGGSHCCQREEPMFPVSRGGRL*LVQKFK
Trigger: TTTAAATTTTTGTACAAGCCAGAGCCTCCCACCCCT...GGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp CTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGTTAAGTGATTTCTCCTaGAGGAGAAATTCATGGCAT +
Preference number: 2 (lower is better)
Translates to: LVLSLPLGSPWPAYLFSRLSDFS*RRNSWH
Trigger: ATGCCATGAATTTCTCCTGCAGGAGAAATCACTTAA...CCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGGTTATGAAGGCCATGTaGCCTGCTCTAGGAAGACAG +
Preference number: 2 (lower is better)
Translates to: EPTKVYIISHCPQKTLAEVMKAM*PALGRQ
Trigger: CTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAAC...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR GCA 90 bp ATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATATTAAGTGATTTCTCCTaGAGGAGAAATTCATGGCAT +
Preference number: 2 (lower is better)
Translates to: IDMNSGLVPTTGFPMACILSDFS*RRNSWH
Trigger: ATGCCATGAATTTCTCCTGCAGGAGAAATCACTTAA...TATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGAAGGGGTGGGAGGCTCTaGCTTGTACAAAAATTTAAA +
Preference number: 2 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERRGGRL*LVQKFK
Trigger: TTTAAATTTTTGTACAAGCCAGAGCCTCCCACCCCT...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR TCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGAGTTGAAAAAGTTAAGTaGTTTCTCCTGCAGGAGAAA +
Preference number: 2 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERVEKVK*FLLQEK
Trigger: TTTCTCCTGCAGGAGAAATCACTTAACTTTTTCAAC...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp TTTTCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCAAGCCAGTAATTAATTaGTTTTGCCTACCAGCAAAA +
Preference number: 2 (lower is better)
Translates to: FSRKQTGEIGEQKAVMKAKPVIN*FCLPAK
Trigger: TTTTGCTGGTAGGCAAAACCAATTAATTACTGGCTT...GGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CCA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGAGGGGTGGGAGGCTCTaGCTTGTACAAAAATTTAAA +
Preference number: 2 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLRGGRL*LVQKFK
Trigger: TTTAAATTTTTGTACAAGCCAGAGCCTCCCACCCCT...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 72 bp CTGGGAAGTGGCGCCGATGTGAGATGGTCCAGTCAGTaGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGGCCA +
Preference number: 3 (lower is better)
Translates to: LGSGADVRWSSQ*GSGSSGSLLGP
Trigger: TGGCCCCAGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
ENSMUST00000202283.5
3UTR GCA 72 bp TGGCAGCCACAACCGAGAGGACTAGAGGGAGCCCAGTaGTTCCCCAAAGCGGATCTTCTGCCCTGCCTTCAG +
Preference number: 3 (lower is better)
Translates to: WQPQPRGLEGAQ*FPKADLLPCLQ
Trigger: CTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 72 bp CCATGGACAGGCAATCTTATAAGGTCAGCCCCGCAGTaGCCCTCACCCAGACAGCCTGAGGCTCCGCTGAAG +
Preference number: 3 (lower is better)
Translates to: PWTGNLIRSAPQ*PSPRQPEAPLK
Trigger: CTTCAGCGGAGCCTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGTCCATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp AAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCTCGATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCA +
Preference number: 3 (lower is better)
Translates to: KRIFCPAFSLKLKSLGASMVEPR*NSPRGS
Trigger: TGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCAT...CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACCTCACTCACCCTGTGCACATaGAGAGAGCCCTGTGACGGG +
Preference number: 3 (lower is better)
Translates to: WPALGRQWIHSLCPAGTSLTLCT*REPCDG
Trigger: CCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAG...TGAGGTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 72 bp CGCAGTGCCCCTCACCCAGACAGCCTGAGGCTCCGCTaGAGACCCTCATGCTCCTGTGTGGAAAGATCCTTT +
Preference number: 3 (lower is better)
Translates to: RSAPHPDSLRLR*RPSCSCVERSF
Trigger: AAAGGATCTTTCCACACAGGAGCATGAGGGTCTTCAGCGGAGCCTCAGGCTGTCTGGGTGAGGGGCACTGCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 72 bp CAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTaGCGGGAGGGGTCACAGCTAGAGGGTGTGGTAGTA +
Preference number: 3 (lower is better)
Translates to: QAPHPVHIERAL*REGSQLEGVVV
Trigger: TACTACCACACCCTCTAGCTGTGACCCCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 72 bp GGAGCCCAGTGCTTCCCCAAAGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCTC +
Preference number: 3 (lower is better)
Translates to: GAQCFPKADLLP*LQPEVEVLGCL
Trigger: GAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACTGGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 72 bp GCATGTCCCCTAGTTCTGCAGGGCAGGGCCTCCACCTaGCCTTTCACTCCAGACTCTACCAGACAAGCCAGT +
Preference number: 3 (lower is better)
Translates to: ACPLVLQGRAST*PFTPDSTRQAS
Trigger: ACTGGCTTGTCTGGTAGAGTCTGGAGTGAAAGGGCAGGTGGAGGCCCTGCCCTGCAGAACTAGGGGACATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TTCCCCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCA +
Preference number: 3 (lower is better)
Translates to: FPKADLLPCLQPEVEVLGMVEPR*NSPRGS
Trigger: TGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCAT...CCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTGAACTCCCCCAGGGGCTCGGAATGCCCTCCTTGTaGGCATGTGTTACAAAGCTC +
Preference number: 3 (lower is better)
Translates to: CLEDEHDGGAQVELPQGLGMPSL*ACVTKL
Trigger: GAGCTTTGTAACACATGCCAACAAGGAGGGCATTCC...GAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR-3UTR CAA 90 bp GCAGCCACAACCGAGAGGACTAGAGGGAGCCCAGTGCTTCCCCAAAGCGGATCTCTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGC +
Preference number: 3 (lower is better)
Translates to: AATTERTRGSPVLPQSGSLKLKS*GASKMS
Trigger: GCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAG...AGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 72 bp CTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTaGCTCGAAGATGAGCACGATGGTGGAGCCCAGGTT +
Preference number: 3 (lower is better)
Translates to: LPCLQPEVEVLG*LEDEHDGGAQV
Trigger: AACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 72 bp CGCGTTGGCACAGATTTATACAGGGACACCTCCCAGTaGCTAGCAAGTTTGGGCGGGATCTCCAAGCCCAGC +
Preference number: 3 (lower is better)
Translates to: RVGTDLYRDTSQ*LASLGGISKPS
Trigger: GCTGGGCTTGGAGATCCCGCCCAAACTTGCTAGTCACTGGGAGGTGTCCCTGTATAAATCTGTGCCAACGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 72 bp CTGAAGACCCTCATGCTCCTGTGTGGAAAGATCCTTTaGCAGCCACAACCGAGAGGACTAGAGGGAGCCCAG +
Preference number: 3 (lower is better)
Translates to: LKTLMLLCGKIL*QPQPRGLEGAQ
Trigger: CTGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGCCAAAGGATCTTTCCACACAGGAGCATGAGGGTCTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp CAGTCTGTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACATGGGAATGCCCTCCTaGTTGGCATGTGTTACAAAG +
Preference number: 3 (lower is better)
Translates to: QSVPSRHLTLCTLREPCDMGMPS*LACVTK
Trigger: CTTTGTAACACATGCCAACAAGGAGGGCATTCCCAT...GTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCACAGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR-3UTR CAA 90 bp GTACTGACCTCTATACCCTCTGCCTCCAACACAGTCCCTAGACCAATAGCAGCACTCACCCTGTGCACATaGAGAGAGCCCTGTGACGGG +
Preference number: 3 (lower is better)
Translates to: VLTSIPSASNTVPRPIAALTLCT*REPCDG
Trigger: CCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAG...TGCTGCTATTGGTCTAGGGACTGTGTTGGAGGCAGAGGGTATAGAGGTCAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACTCACCCTGTGCACATaGAGAGAGCCCTGTGACGGG +
Preference number: 3 (lower is better)
Translates to: AESSYEGHVACSRKTVDPLTLCT*REPCDG
Trigger: CCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAG...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGTACTCTCACCCTGTGCACATaGAGAGAGCCCTGTGACGGG +
Preference number: 3 (lower is better)
Translates to: SCPYHWVPHGLHTCFLGTLTLCT*REPCDG
Trigger: CCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAG...AGTACCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp GAAGTTGAAGTCCTTGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTTGTACCTGGGGCTGTTaGTGTGCAGGTCTCGGTCAA +
Preference number: 3 (lower is better)
Translates to: EVEVLGCLEDEHDGGAQVCTWGC*CAGLGQ
Trigger: TTGACCGAGACCTGCACACAAACAGCCCCAGGTACA...AACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR TCA 72 bp GTTCTTCACCTGCCCAAAGGTGAGGATCTTGCCATCTaGTGGGCTGGTCACACAGTGCAAGCCACATACGGG +
Preference number: 3 (lower is better)
Translates to: VLHLPKGEDLAI*WAGHTVQATYG
Trigger: CCCGTATGTGGCTTGCACTGTGTGACCAGCCCATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGAAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR GCA 72 bp TGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTaGTCTAGGAAGACAGTGGATCCACAGTCTGTGCCC +
Preference number: 3 (lower is better)
Translates to: WGAESSYEGHVA*SRKTVDPQSVP
Trigger: GGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 72 bp ACGCCCTTTACCTGCTCCACCTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTGCCATCTGATGGGCTG +
Preference number: 3 (lower is better)
Translates to: TPFTCSTSEFFT*PKVRILPSDGL
Trigger: CAGCCCATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGAGGTGGAGCAGGTAAAGGGCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR GCA 72 bp ATGCCCTCGGATAGAGCCCACATTGGTGGCTCCCACTaGTGTCAACGAGAAGAACCCATGTTTCCAGTCTCC +
Preference number: 3 (lower is better)
Translates to: MPSDRAHIGGSH*CQREEPMFPVS
Trigger: GGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTGGGCTCTATCCGAGGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
3UTR CCA 72 bp TACCTGGGGCTGTTTGTGTGCAGGTCTCGGTCAAAGTaGATACGGATAGAGCCCACATTGGTGGCTCCCACT +
Preference number: 3 (lower is better)
Translates to: YLGLFVCRSRSK*IRIEPTLVAPT
Trigger: AGTGGGAGCCACCAATGTGGGCTCTATCCGTATCCACTTTGACCGAGACCTGCACACAAACAGCCCCAGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 72 bp GGGGCTCACCCTTGCGCATGGGAATGCCCTCCTTGTTaGCATGTGTTACAAAGCTCAGGTCATTGTAGGAGC +
Preference number: 3 (lower is better)
Translates to: GAHPCAWECPPC*HVLQSSGHCRS
Trigger: GCTCCTACAATGACCTGAGCTTTGTAACACATGCCAACAAGGAGGGCATTCCCATGCGCAAGGGTGAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR GCA 72 bp GTGGATACGGATAGAGCCCACATTGGTGGCTCCCACTaGTGTCAACGAGAAGAACCCATGTTTCCAGTCTCC +
Preference number: 3 (lower is better)
Translates to: VDTDRAHIGGSH*CQREEPMFPVS
Trigger: GGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTGGGCTCTATCCGTATCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
3UTR CCA 72 bp CAAAGCTCAGGTCATTGTAGGAGCCCTTGCTGTACCTaGGGCTGTTTGTGTGCAGGTCTCGGTCAAAGTGGA +
Preference number: 3 (lower is better)
Translates to: QSSGHCRSPCCT*GCLCAGLGQSG
Trigger: TCCACTTTGACCGAGACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATGACCTGAGCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR TCA 72 bp GGTTCCCCATGGCCTGCATACCTGTTTTCTAGGTACTaGCCTCTATACCCTCTGCCTCCAACACAGTCCCTA +
Preference number: 3 (lower is better)
Translates to: GSPWPAYLFSRY*PLYPLPPTQSL
Trigger: TAGGGACTGTGTTGGAGGCAGAGGGTATAGAGGTCAGTACCTAGAAAACAGGTATGCAGGCCATGGGGAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR GCA 72 bp CATGTGTTACAAAGCTCAGGTCATTGTAGGAGCCCTTaGTGTACCTGGGGCTGTTTGTGTGCAGGTCTCGGT +
Preference number: 3 (lower is better)
Translates to: HVLQSSGHCRSP*CTWGCLCAGLG
Trigger: ACCGAGACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATGACCTGAGCTTTGTAACACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR CAA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCG +
Preference number: 3 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPAFSLK*KSLGAS
Trigger: CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGC...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp CCCACTGCTGTCAACGAGAAGAACCCATGTTTCCAGTCTCCAGTTAGGACTACACCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTG +
Preference number: 3 (lower is better)
Translates to: PTAVNEKNPCFQSPVRTTPKVRI*PSDGLV
Trigger: CACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...TGTAGTCCTAACTGGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000197787.5
3UTR TCA 72 bp AGGAAGTTCTACTTGGTTGAGGCGACCACAGGCACGTaGCAGCAAACGCGTTGGCACAGATTTATACAGGGA +
Preference number: 3 (lower is better)
Translates to: RKFYLVEATTGT*QQTRWHRFIQG
Trigger: TCCCTGTATAAATCTGTGCCAACGCGTTTGCTGTCACGTGCCTGTGGTCGCCTCAACCAAGTAGAACTTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR CCA 72 bp GAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTaGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTG +
Preference number: 3 (lower is better)
Translates to: EIGEQKAVMKAM*PALGRQWIHSL
Trigger: CAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 72 bp AGAAATTCATGGCATTCCCAAGATCGACATGAACTCTaGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTG +
Preference number: 3 (lower is better)
Translates to: RNSWHSQDRHEL*SCPYHWVPHGL
Trigger: CAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 72 bp GTTCACCCCAAAGGTCCAGATATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGGAAGTTCTACTTGGTT +
Preference number: 3 (lower is better)
Translates to: VHPKGPDIQAVD*PPEPVRKFYLV
Trigger: AACCAAGTAGAACTTCCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTATATCTGGACCTTTGGGGTGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
3UTR-3UTR CAA 90 bp TCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCGTGGGAGGCTCTGGCTaGTACAAAAATTTAAAACAC +
Preference number: 3 (lower is better)
Translates to: SQDRHELWSCPYHWVPHGVGGSG*YKNLKH
Trigger: GTGTTTTAAATTTTTGTACAAGCCAGAGCCTCCCAC...GCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATACTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGC +
Preference number: 3 (lower is better)
Translates to: KVYIISHCPQKTLAEPRILKLKS*GASKMS
Trigger: GCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAG...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGCAGACGGGTGAAATaGGGGAGCAGAAAGCAGTTA +
Preference number: 3 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPSRRVK*GSRKQL
Trigger: TAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCT...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR TCA 72 bp TTAGGACTACACGCTCATTGTGACAAAAGAGCTCTTTaGTCCATCGGGCCATGCCAGGGTTCACTGACATCA +
Preference number: 3 (lower is better)
Translates to: LGLHAHCDKRAL*SIGPCQGSLTS
Trigger: TGATGTCAGTGAACCCTGGCATGGCCCGATGGATCAAAGAGCTCTTTTGTCACAATGAGCGTGTAGTCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
ENSMUST00000202283.5
3UTR TCA 72 bp TGTTTCCAGTCTCCAGTTAGGACTACACGCTCATTGTaGCAAAAGAGCTCTTTGATCCATCGGGCCATGCCA +
Preference number: 3 (lower is better)
Translates to: CFQSPVRTTRSL*QKSSLIHRAMP
Trigger: TGGCATGGCCCGATGGATCAAAGAGCTCTTTTGTCACAATGAGCGTGTAGTCCTAACTGGAGACTGGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000142957.6
ENSMUST00000197787.5
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCG +
Preference number: 3 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLAFSLK*KSLGAS
Trigger: CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGC...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TGGTGGCTCCCACTGCTGTCAACGAGAAGAACCCATGTTTCCAGTCTCCAGTTAGTGGGAGGCTCTGGCTaGTACAAAAATTTAAAACAC +
Preference number: 3 (lower is better)
Translates to: WWLPLLSTRRTHVSSLQLVGGSG*YKNLKH
Trigger: GTGTTTTAAATTTTTGTACAAGCCAGAGCCTCCCAC...TAACTGGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGAGCAGACGGGTGAAATaGGGGAGCAGAAAGCAGTTA +
Preference number: 3 (lower is better)
Translates to: EPTKVYIISHCPQKTLAESRRVK*GSRKQL
Trigger: TAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCT...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGATGGGAATGCCCTCCTaGTTGGCATGTGTTACAAAG +
Preference number: 3 (lower is better)
Translates to: EPTKVYIISHCPQKTLAEMGMPS*LACVTK
Trigger: CTTTGTAACACATGCCAACAAGGAGGGCATTCCCAT...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
3UTR-3UTR CAA 90 bp TCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGGTGGGAGGCTCTGGCTaGTACAAAAATTTAAAACAC +
Preference number: 3 (lower is better)
Translates to: SRKQTGEIGEQKAVMKAMVGGSG*YKNLKH
Trigger: GTGTTTTAAATTTTTGTACAAGCCAGAGCCTCCCAC...CATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 72 bp TCACTCCAGACTCTACCAGACAAGCCAGTAATTAATTaGTTTTGCCTACCAGCAAAAGGATTCAGCCAGCTT +
Preference number: 3 (lower is better)
Translates to: SLQTLPDKPVIN*FCLPAKGFSQL
Trigger: AAGCTGGCTGAATCCTTTTGCTGGTAGGCAAAACCAATTAATTACTGGCTTGTCTGGTAGAGTCTGGAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR-3UTR CAA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGTGGGAGGCTCTGGCTaGTACAAAAATTTAAAACAC +
Preference number: 3 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLVGGSG*YKNLKH
Trigger: GTGTTTTAAATTTTTGTACAAGCCAGAGCCTCCCAC...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CCA 72 bp AAAAAGTTAAGTGATTTCTCCTGCAGGAGAAATTCATaGCATTCCCAAGATCGACATGAACTCTGGTCTTGT +
Preference number: 3 (lower is better)
Translates to: KKLSDFSCRRNS*HSQDRHELWSC
Trigger: ACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCTCCTGCAGGAGAAATCACTTAACTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGGGGACACCCTGCTCATaGGCCTCCATCCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: VPSRHLTLCTLREPCDGRGTPCS*ASIPPG
Trigger: GCCAGGTGGGATGGAGGCCCATGAGCAGGGTGTCCC...CCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp AGAGGACTAGAGGGAGCCCAGTGCTTCCCCAAAGCGGATCTTCTGCCCTGCCTTTCCATCCCACCTGGCTaGGGGGCCCGAGCGCACGGA +
Preference number: 4 (lower is better)
Translates to: RGLEGAQCFPKADLLPCLSIPPG*GARAHG
Trigger: TCCGTGCGCTCGGGCCCCTCAGCCAGGTGGGATGGA...AAGGCAGGGCAGAAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp GGCCAGGTAGATGACACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGTCCATCCCACCTGGCTaGGGGGCCCGAGCGCACGGA +
Preference number: 4 (lower is better)
Translates to: GQVDDTVVQLIPFPGDQLSIPPG*GARAHG
Trigger: TCCGTGCGCTCGGGCCCCTCAGCCAGGTGGGATGGA...CAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCATCTACCTGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp GTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGCCAGGGGCTCACCCTTaGGCATGGGAATGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: VPSRHLTLCTLREPCDGRPGAHP*AWECPP
Trigger: AGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGG...CCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp CCTCTGTATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTAGGTTACGCCCTGGCCTCCATCCCACCTaGCTGAGGGGCCCGAGCGCA +
Preference number: 4 (lower is better)
Translates to: PLYWLEGPGRTPRSRLRPGLHPT*LRGPSA
Trigger: TGCGCTCGGGCCCCTCAGCCAGGTGGGATGGAGGCC...AGGGCGTAACCTACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GAAGGGCAGGTCCTCTGTATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTAGGCCTCCATCCCACCTaGCTGAGGGGCCCGAGCGCA +
Preference number: 4 (lower is better)
Translates to: EGQVLCIGSRAQEGLQGVGLHPT*LRGPSA
Trigger: TGCGCTCGGGCCCCTCAGCCAGGTGGGATGGAGGCC...TACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGGACCTGCCCTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
3UTR CAA 72 bp GGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCACCCTTGCGCATGGGA +
Preference number: 4 (lower is better)
Translates to: GASKMSTMVEPR*NSPRGSPLRMG
Trigger: TCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp GAGAGCCCTGTGACGGGAGGGGTCACAGCTAGAGGGTGTGGTAGTACACAGCCACATACGGGCCGTGCCTaGGGCTTCAGCTTACGCCGG +
Preference number: 4 (lower is better)
Translates to: ESPVTGGVTARGCGSTQPHTGRA*GFSLRR
Trigger: CCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTATG...TGGCTGTGTACTACCACACCCTCTAGCTGTGACCCCTCCCGTCACAGGGCTCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp GGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTGAACTCCCCCAGGGGGAGCTGGTCTGGACATaGAGCTCAGCTGGCCTAGCC +
Preference number: 4 (lower is better)
Translates to: GCLEDEHDGGAQVELPQGELVWT*SSAGLA
Trigger: GGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTC...CCCCTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp TGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACCTCATGGTGGAGCCCAGGTTaGACTCCCCCAGGGGCTCAC +
Preference number: 4 (lower is better)
Translates to: WPALGRQWIHSLCPAGTSWWSPG*TPPGAH
Trigger: GTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCA...TGAGGTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp AGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGGCCAGGTAGATGACACAGTGGGGACACCCTGCTCATaGGCCTCCATCCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: SGGVEAVVVSWGQVDDTVGTPCS*ASIPPG
Trigger: GCCAGGTGGGATGGAGGCCCATGAGCAGGGTGTCCC...CACTGTGTCATCTACCTGGCCCCAGGAGACTACCACTGCTTCCACTCCCCCACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
3UTR CAA 72 bp GTGGAGCCCAGGTTGAACTCCCCCAGGGGCTCACCCTaGCGCATGGGAATGCCCTCGGATAGAGCCCACATT +
Preference number: 4 (lower is better)
Translates to: VEPRLNSPRGSP*RMGMPSDRAHI
Trigger: AATGTGGGCTCTATCCGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CAGTCTGTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACCATTTCGCTGCTGCTTaGAGCTCCGGTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: QSVPSRHLTLCTLREPCDHFAAA*SSGPGC
Trigger: GCAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATG...GTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCACAGACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GCCGATGTGAGATGGTCCAGTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGAGGTAGTGGAGGATaGTCAGCGGCCAGGAGCGCA +
Preference number: 4 (lower is better)
Translates to: ADVRWSSQWGSGSSGSLLGGSGG*SAARSA
Trigger: TGCGCTCCTGGCCGCTGACCATCCTCCACTACCTCC...CAGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGGGCCTCCATCCCACCTaGCTGAGGGGCCCGAGCGCA +
Preference number: 4 (lower is better)
Translates to: AVMKAMWPALGRQWIHSLGLHPT*LRGPSA
Trigger: TGCGCTCGGGCCCCTCAGCCAGGTGGGATGGAGGCC...CAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGAGCCCTTGCTGTACCTaGGGCTGTTTGTGTGCAGGT +
Preference number: 4 (lower is better)
Translates to: VPSRHLTLCTLREPCDGRSPCCT*GCLCAG
Trigger: ACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCT...CCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GAGAGCCCTGTGACGGGAGGGGTCACAGCTAGAGGGTGTGGTAGTACACAGCCACTGTTGCCAACAGGATaGGCACAGGGCGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: ESPVTGGVTARGCGSTQPLLPTG*AQGAAG
Trigger: TCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACAG...TGGCTGTGTACTACCACACCCTCTAGCTGTGACCCCTCCCGTCACAGGGCTCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
3UTR CAA 72 bp GTGGAGCCCAGGTTGAACTCCCCCAGGGGCTCACCCTaGCGCATGGGAATGCCCTCCTTGTTGGCATGTGTT +
Preference number: 4 (lower is better)
Translates to: VEPRLNSPRGSP*RMGMPSLLACV
Trigger: AACACATGCCAACAAGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
CDS-3UTR TCA 90 bp CCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGGGTTCACCTGCCCAAAGGTaGGGATCTTGCCATCTGATG +
Preference number: 4 (lower is better)
Translates to: PSRHLTLCTLREPCDGRGSPAQR*GSCHLM
Trigger: CATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGA...ACCCCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp TGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACCTCATGGGTGCCTCGAAGATaGGCACGATGGTGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: WPALGRQWIHSLCPAGTSWVPRR*ARWWSP
Trigger: TGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCA...TGAGGTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GGCCAGGTAGATGACACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGCATTTCGCTGCTGCTTaGAGCTCCGGTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: GQVDDTVVQLIPFPGDQLHFAAA*SSGPGC
Trigger: GCAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATG...CAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCATCTACCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000197787.5
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCGACATGCAGCTCAGCTaGCCTAGCCTCCGCCGTAGG +
Preference number: 4 (lower is better)
Translates to: PKRIFCPAFSLKLKSLGADMQLS*PSLRRR
Trigger: CCTACGGCGGAGGCTAGGCCAGCTGAGCTGCATGTC...GGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCGGAGGTAGTGGAGGATaGTCAGCGGCCAGGAGCGCA +
Preference number: 4 (lower is better)
Translates to: PKRIFCPAFSLKLKSLGAGGSGG*SAARSA
Trigger: TGCGCTCCTGGCCGCTGACCATCCTCCACTACCTCC...GGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CCTCTGTATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTAGGTTACGCCCTCTGTTGCCAACAGGATaGGCACAGGGCGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: PLYWLEGPGRTPRSRLRPLLPTG*AQGAAG
Trigger: TCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACAG...AGGGCGTAACCTACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
CDS-3UTR TCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGATCCATCCCACCTGGCTaGGGGGCCCGAGCGCACGGA +
Preference number: 4 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERSIPPG*GARAHG
Trigger: TCCGTGCGCTCGGGCCCCTCAGCCAGGTGGGATGGA...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp TGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGTGCCTCGAAGATGAGCACGGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 4 (lower is better)
Translates to: CPAFSLKLKSLGASKMSTAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...CGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp CCTGAGAGACCCAGAACCTCTCCTCTGCACCCATGGACAGGCAATCTTATAAGGCATACGGGCCGTGCCTaGGGCTTCAGCTTACGCCGG +
Preference number: 4 (lower is better)
Translates to: PERPRTSPLHPWTGNLIRHTGRA*GFSLRR
Trigger: CCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTATG...CCTTATAAGATTGCCTGTCCATGGGTGCAGAGGAGAGGTTCTGGGTCTCTCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp GCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGCATACGGGCCGTGCCTaGGGCTTCAGCTTACGCCGG +
Preference number: 4 (lower is better)
Translates to: AVMKAMWPALGRQWIHSLHTGRA*GFSLRR
Trigger: CCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTATG...CAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp GAGAGCCCTGTGACGGGAGGGGTCACAGCTAGAGGGTGTGGTAGTACACAGCCACTAGAGGGAGCCCAGTaGTTCCCCAAAGCGGATCTT +
Preference number: 4 (lower is better)
Translates to: ESPVTGGVTARGCGSTQPLEGAQ*FPKADL
Trigger: AAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAG...TGGCTGTGTACTACCACACCCTCTAGCTGTGACCCCTCCCGTCACAGGGCTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GCAGCCACAACCGAGAGGACTAGAGGGAGCCCAGTGCTTCCCCAAAGCGGATCTGTTTCAGAGCTGGTCTaGACATGCAGCTCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: AATTERTRGSPVLPQSGSVSELV*TCSSAG
Trigger: GCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAAC...AGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GGGTCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGGGGACACCCTGCTCATaGGCCTCCATCCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: GSNHTHPYSEKGSRSCPEGTPCS*ASIPPG
Trigger: GCCAGGTGGGATGGAGGCCCATGAGCAGGGTGTCCC...CTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGGGGACACCCTGCTCATaGGCCTCCATCCCACCTGGC +
Preference number: 4 (lower is better)
Translates to: AVMKAMWPALGRQWIHSLGTPCS*ASIPPG
Trigger: GCCAGGTGGGATGGAGGCCCATGAGCAGGGTGTCCC...CAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 4 (lower is better)
Translates to: AMWPALGRQWIHSLCPAGIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...GCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CAGTCTGTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACAGATGGTCCAGTCAGTaGGGGAGTGGAAGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: QSVPSRHLTLCTLREPCDRWSSQ*GSGSSG
Trigger: ACCACTGCTTCCACTCCCCCACTGACTGGACCATCT...GTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCACAGACTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp CCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGGGTCGGACAGGAGCAGTATaGAAATTTCTGACACCTGCC +
Preference number: 4 (lower is better)
Translates to: PSRHLTLCTLREPCDGRGRTGAV*KFLTPA
Trigger: GGCAGGTGTCAGAAATTTCCATACTGCTCCTGTCCG...ACCCCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp CCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGGGTAGGTCTCGGTCAAAGTaGATACGGATAGAGCCCACA +
Preference number: 4 (lower is better)
Translates to: PSRHLTLCTLREPCDGRGRSRSK*IRIEPT
Trigger: TGTGGGCTCTATCCGTATCCACTTTGACCGAGACCT...ACCCCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp ATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 4 (lower is better)
Translates to: MKAMWPALGRQWIHSLCPAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...TGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp ACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGACCCAGAACCAGGGACACCTCCCAGTaGCTAGCAAGTTTGGGCGGG +
Preference number: 4 (lower is better)
Translates to: THPYSEKGSRSCPERPRTRDTSQ*LASLGG
Trigger: CCCGCCCAAACTTGCTAGTCACTGGGAGGTGTCCCT...GGTTCTGGGTCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp GGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGATGGTGGAGCCCAGGTTaGACTCCCCCAGGGGCTCAC +
Preference number: 4 (lower is better)
Translates to: GEIGEQKAVMKAMWPALGWWSPG*TPPGAH
Trigger: GTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCA...TCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp GGGCCTCCACCTGCCCTTTCACTCCAGACTCTACCAGACAAGCCAGTAATTAATTGGTGGAGCCCAGGTTaGACTCCCCCAGGGGCTCAC +
Preference number: 4 (lower is better)
Translates to: GPPPALSLQTLPDKPVINWWSPG*TPPGAH
Trigger: GTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCA...ATTAATTACTGGCTTGTCTGGTAGAGTCTGGAGTGAAAGGGCAGGTGGAGGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp ATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCATGGGTGCCTCGAAGATaGGCACGATGGTGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: MKAMWPALGRQWIHSLCPWVPRR*ARWWSP
Trigger: TGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCA...TGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp AGGTTGAACTCCCCCAGGGGCTCACCCTTGCGCATGGGAATGCCCTCCTTGTTGCATTGTAGGAGCCCTTaGTGTACCTGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: RLNSPRGSPLRMGMPSLLHCRSP*CTWGCL
Trigger: CAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATG...CAACAAGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS-3UTR GCA 90 bp CAGTCTGTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAA +
Preference number: 4 (lower is better)
Translates to: QSVPSRHLTLCTLREPCDADLLP*LQPEVE
Trigger: TTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGC...GTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCACAGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp GAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCCTAGAGGGAGCCCAGTaGTTCCCCAAAGCGGATCTT +
Preference number: 4 (lower is better)
Translates to: EGHVACSRKTVDPQSVPSLEGAQ*FPKADL
Trigger: AAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAG...GCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp ATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCACATTTCGCTGCTGCTTaGAGCTCCGGTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: MKAMWPALGRQWIHSLCPHFAAA*SSGPGC
Trigger: GCAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATG...TGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GCCCACATTGGTGGCTCCCACTGCTGTCAACGAGAAGAACCCATGTTTCCAGTCCATTTCGCTGCTGCTTaGAGCTCCGGTCCTGGCTGC +
Preference number: 4 (lower is better)
Translates to: AHIGGSHCCQREEPMFPVHFAAA*SSGPGC
Trigger: GCAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATG...GACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGGGAGCCACCAATGTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000197787.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACGTTTCAGAGCTGGTCTaGACATGCAGCTCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: HVACSRKTVDPQSVPSRHVSELV*TCSSAG
Trigger: GCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAAC...GTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GAAGGGCAGGTCCTCTGTATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTAGCGCAGTTTCAGAGCTaGTCTGGACATGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: EGQVLCIGSRAQEGLQGVAQFQS*SGHAAQ
Trigger: CTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGC...TACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGGACCTGCCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp ACAGGCAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTGAGGCGCAGTTTCAGAGCTaGTCTGGACATGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: TGNLIRSAPQCPSPRQPEAQFQS*SGHAAQ
Trigger: CTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGC...CTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GCCGATGTGAGATGGTCCAGTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 4 (lower is better)
Translates to: ADVRWSSQWGSGSSGSLLIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...CAGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp TGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACCTCAGCAGTGGTAGTCTCCTaGGGCCAGGTAGATGACACA +
Preference number: 4 (lower is better)
Translates to: WPALGRQWIHSLCPAGTSAVVVS*GQVDDT
Trigger: TGTGTCATCTACCTGGCCCCAGGAGACTACCACTGC...TGAGGTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATATCCATCCCACCTGGCTaGGGGGCCCGAGCGCACGGA +
Preference number: 4 (lower is better)
Translates to: KVYIISHCPQKTLAEPRISIPPG*GARAHG
Trigger: TCCGTGCGCTCGGGCCCCTCAGCCAGGTGGGATGGA...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp CCTGAGAGACCCAGAACCTCTCCTCTGCACCCATGGACAGGCAATCTTATAAGGGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 4 (lower is better)
Translates to: PERPRTSPLHPWTGNLIRAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...CCTTATAAGATTGCCTGTCCATGGGTGCAGAGGAGAGGTTCTGGGTCTCTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp ATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATAGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 4 (lower is better)
Translates to: IDMNSGLVPTTGFPMACIAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...TATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp GTAGATGACACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGGTTTCTGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 4 (lower is better)
Translates to: VDDTVVQLIPFPGDQLVSAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...AGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCATCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp ACAGGCAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTGAGTCACCTGCCCAAAGGTaGGGATCTTGCCATCTGATG +
Preference number: 4 (lower is better)
Translates to: TGNLIRSAPQCPSPRQPESPAQR*GSCHLM
Trigger: CATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGA...CTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp GAAGGGCAGGTCCTCTGTATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTATCACCTGCCCAAAGGTaGGGATCTTGCCATCTGATG +
Preference number: 4 (lower is better)
Translates to: EGQVLCIGSRAQEGLQGVSPAQR*GSCHLM
Trigger: CATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGA...TACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGGACCTGCCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp GAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCTCACCTGCCCAAAGGTaGGGATCTTGCCATCTGATG +
Preference number: 4 (lower is better)
Translates to: EGHVACSRKTVDPQSVPSSPAQR*GSCHLM
Trigger: CATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGA...GCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp CATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACGACAAAAGAGCTCTTTaGTCCATCGGGCCATGCCAG +
Preference number: 4 (lower is better)
Translates to: HVACSRKTVDPQSVPSRHDKRAL*SIGPCQ
Trigger: CTGGCATGGCCCGATGGATCAAAGAGCTCTTTTGTC...GTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
CDS-3UTR GCA 90 bp ATGACACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGGTTTCTGAAGGAGCTGGTCTGGACATaGAGCTCAGCTGGCCTAGCC +
Preference number: 4 (lower is better)
Translates to: MTQWYSSFPSRVTSWFLKELVWT*SSAGLA
Trigger: GGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTC...CTTCAGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp ACAGGCAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTGAGCATTGTAGGAGCCCTTaGTGTACCTGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: TGNLIRSAPQCPSPRQPEHCRSP*CTWGCL
Trigger: CAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATG...CTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACCAGGGGCTCACCCTTaGGCATGGGAATGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: AESSYEGHVACSRKTVDPPGAHP*AWECPP
Trigger: AGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGG...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GGAGTGGAAGCAGTGGTAGTCTCCTGGGGCCAGGTAGATGACACAGTGGTACAGGTTTCAGAGCTGGTCTaGACATGCAGCTCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: GVEAVVVSWGQVDDTVVQVSELV*TCSSAG
Trigger: GCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAAC...CTGTACCACTGTGTCATCTACCTGGCCCCAGGAGACTACCACTGCTTCCACTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp ACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGACCCAGAAGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGT +
Preference number: 4 (lower is better)
Translates to: TPTHTLKRGLGPVLRDPEGADVR*SSQWGS
Trigger: ACTCCCCCACTGACTGGACCATCTCACATCGGCGCC...TTCTGGGTCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCCGGACAGGAGCAGTATaGAAATTTCTGACACCTGCC +
Preference number: 4 (lower is better)
Translates to: AMWPALGRQWIHSLCPAGRTGAV*KFLTPA
Trigger: GGCAGGTGTCAGAAATTTCCATACTGCTCCTGTCCG...GCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTGTTGCCAACAGGATaGGCACAGGGCGCAGCAGGA +
Preference number: 4 (lower is better)
Translates to: ELWSCPYHWVPHGLHTCFLLPTG*AQGAAG
Trigger: TCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACAG...AAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
3UTR CAA 72 bp ATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCC +
Preference number: 4 (lower is better)
Translates to: IFCPAFSLKLKS*GASKMSTMVEP
Trigger: GGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
3UTR CAA 72 bp GCTGAAGACCCTCATGCTCCTGTGTGGAAAGATCCTTaGGCAGCCACAACCGAGAGGACTAGAGGGAGCCCA +
Preference number: 4 (lower is better)
Translates to: AEDPHAPVWKDP*AATTERTRGSP
Trigger: TGGGCTCCCTCTAGTCCTCTCGGTTGTGGCTGCCAAAGGATCTTTCCACACAGGAGCATGAGGGTCTTCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp TCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGTACTGAGCTGGTCTGGACATaGAGCTCAGCTGGCCTAGCC +
Preference number: 4 (lower is better)
Translates to: SCPYHWVPHGLHTCFLGTELVWT*SSAGLA
Trigger: GGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTC...AGTACCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp CTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGATACCCTCCACCTGTTaGCAACAGGATGGGCACAGG +
Preference number: 4 (lower is better)
Translates to: LVLSLPLGSPWPAYLFSRIPSTC*QQDGHR
Trigger: CCTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTAT...CCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
CDS-3UTR GCA 90 bp ACAGGCAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTGAGGTTGAAGTCCTTGGGTaGCTCGAAGATGAGCACGAT +
Preference number: 4 (lower is better)
Translates to: TGNLIRSAPQCPSPRQPEVEVLG*LEDEHD
Trigger: ATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAAC...CTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp TTCCCCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTTGAAGTCCTTGGGGCGCAGTTTCAGAGCTaGTCTGGACATGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: FPKADLLPCLQPEVEVLGAQFQS*SGHAAQ
Trigger: CTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGC...CCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGAGGAGGTAGTGGAGGATaGTCAGCGGCCAGGAGCGCA +
Preference number: 4 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERGGSGG*SAARSA
Trigger: TGCGCTCCTGGCCGCTGACCATCCTCCACTACCTCC...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp AGACAGCCTGAGGCTCCGCTGAAGACCCTCATGCTCCTGTGTGGAAAGATCCTTATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 4 (lower is better)
Translates to: RQPEAPLKTLMLLCGKILIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...AAGGATCTTTCCACACAGGAGCATGAGGGTCTTCAGCGGAGCCTCAGGCTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGGCAGTGGTAGTCTCCTaGGGCCAGGTAGATGACACA +
Preference number: 4 (lower is better)
Translates to: LVLSLPLGSPWPAYLFSRAVVVS*GQVDDT
Trigger: TGTGTCATCTACCTGGCCCCAGGAGACTACCACTGC...CCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GAAGTTGAAGTCCTTGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTGCAGTGGTAGTCTCCTaGGGCCAGGTAGATGACACA +
Preference number: 4 (lower is better)
Translates to: EVEVLGCLEDEHDGGAQVAVVVS*GQVDDT
Trigger: TGTGTCATCTACCTGGCCCCAGGAGACTACCACTGC...AACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS-3UTR CCA 90 bp CTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGAGATGGTCCAGTCAGTaGGGGAGTGGAAGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: LVLSLPLGSPWPAYLFSRRWSSQ*GSGSSG
Trigger: ACCACTGCTTCCACTCCCCCACTGACTGGACCATCT...CCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp ATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAAGATGGTCCAGTCAGTaGGGGAGTGGAAGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: MKAMWPALGRQWIHSLCPRWSSQ*GSGSSG
Trigger: ACCACTGCTTCCACTCCCCCACTGACTGGACCATCT...TGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCAGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGT +
Preference number: 4 (lower is better)
Translates to: AESSYEGHVACSRKTVDPGADVR*SSQWGS
Trigger: ACTCCCCCACTGACTGGACCATCTCACATCGGCGCC...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp ATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAAGCCCTTGCTGTACCTaGGGCTGTTTGTGTGCAGGT +
Preference number: 4 (lower is better)
Translates to: MKAMWPALGRQWIHSLCPSPCCT*GCLCAG
Trigger: ACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCT...TGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
3UTR CAA 72 bp CCAAAGCGGATCTTCTGCCCTGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCGAAGATGAGCACGATG +
Preference number: 4 (lower is better)
Translates to: PKRIFCPAFSLK*KSLGASKMSTM
Trigger: CATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGCTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000142957.6
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATACATACGGGCCGTGCCTaGGGCTTCAGCTTACGCCGG +
Preference number: 4 (lower is better)
Translates to: KVYIISHCPQKTLAEPRIHTGRA*GFSLRR
Trigger: CCGGCGTAAGCTGAAGCCTCAGGCACGGCCCGTATG...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp CCACTGCTGTCAACGAGAAGAACCCATGTTTCCAGTCTCCAGTTAGGACTACACGAGCTGGTCTGGACATaGAGCTCAGCTGGCCTAGCC +
Preference number: 4 (lower is better)
Translates to: PLLSTRRTHVSSLQLGLHELVWT*SSAGLA
Trigger: GGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTC...GTGTAGTCCTAACTGGAGACTGGAAACATGGGTTCTTCTCGTTGACAGCAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp CTAGAGGGTGTGGTAGTACACAGCCAGGAGTTAGGGGTGGGAGGCTCTGGCTTGTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 4 (lower is better)
Translates to: LEGVVVHSQELGVGGSGLSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...CAAGCCAGAGCCTCCCACCCCTAACTCCTGGCTGTGTACTACCACACCCTCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGACTGGGGCTGTTTGTGTaGAGGTCCTGGGAAGTGGCG +
Preference number: 4 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERLGLFV*RSWEVA
Trigger: CGCCACTTCCCAGGACCTGCACACAAACAGCCCCAG...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS-3UTR GCA 90 bp ACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGACCCAGAACCCATTGTAGGAGCCCTTaGTGTACCTGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: THPYSEKGSRSCPERPRTHCRSP*CTWGCL
Trigger: CAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATG...GGTTCTGGGTCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp CAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGACCAGGGGCTCACCCTTaGGCATGGGAATGCCCTCCT +
Preference number: 4 (lower is better)
Translates to: QRSTSLVIVLRRHWQSPGPGAHP*AWECPP
Trigger: AGGAGGGCATTCCCATGCGCAAGGGTGAGCCCCTGG...TCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GGGTCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGGCGCAGTTTCAGAGCTaGTCTGGACATGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: GSNHTHPYSEKGSRSCPEAQFQS*SGHAAQ
Trigger: CTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGC...CTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCGGAGGTAGTGGAGGATaGTCAGCGGCCAGGAGCGCA +
Preference number: 4 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPGGSGG*SAARSA
Trigger: TGCGCTCCTGGCCGCTGACCATCCTCCACTACCTCC...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGAGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGT +
Preference number: 4 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERGADVR*SSQWGS
Trigger: ACTCCCCCACTGACTGGACCATCTCACATCGGCGCC...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTAGCCCTTGCTGTACCTaGGGCTGTTTGTGTGCAGGT +
Preference number: 4 (lower is better)
Translates to: ELWSCPYHWVPHGLHTCFSPCCT*GCLCAG
Trigger: ACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCT...AAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
3UTR CAA 72 bp ACCTCAGAGTTCTTCACCTGCCCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTCACACAGTGCAAGCCA +
Preference number: 4 (lower is better)
Translates to: TSEFFTCPKVRI*PSDGLVTQCKP
Trigger: TGGCTTGCACTGTGTGACCAGCCCATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
CDS-3UTR TCA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCGCCGGAAGAACTCGCTaGGGTTGCGGTAGTGGTGCA +
Preference number: 4 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPAGRTR*GCGSGA
Trigger: TGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGC...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp ACAGGCAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTGAGTTTCTGACACCTGCCTaGAGAGGCAATTTCTGTAAG +
Preference number: 4 (lower is better)
Translates to: TGNLIRSAPQCPSPRQPEFLTPA*RGNFCK
Trigger: CTTACAGAAATTGCCTCTTCAGGCAGGTGTCAGAAA...CTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCAGTGCAGGTCCTCCACTaGAGCCTCAGTCATGTTCAC +
Preference number: 4 (lower is better)
Translates to: AESSYEGHVACSRKTVDPVQVLH*SLSHVH
Trigger: GTGAACATGACTGAGGCTGCAGTGGAGGACCTGCAC...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp CTCCACTGCAGCCTCAGTCATGTTCACCCCAAAGGTCCAGATATACAGGCTGTAATACCCTCCACCTGTTaGCAACAGGATGGGCACAGG +
Preference number: 4 (lower is better)
Translates to: LHCSLSHVHPKGPDIQAVIPSTC*QQDGHR
Trigger: CCTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTAT...TACAGCCTGTATATCTGGACCTTTGGGGTGAACATGACTGAGGCTGCAGTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
CDS-3UTR GCA 90 bp GAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTGTACTTCTCATACTaGCGGTACCCGGCATACCCT +
Preference number: 4 (lower is better)
Translates to: ELWSCPYHWVPHGLHTCFLYFSY*RYPAYP
Trigger: AGGGTATGCCGGGTACCGGCAGTATGAGAAGTACAG...AAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp AGACAGCCTGAGGCTCCGCTGAAGACCCTCATGCTCCTGTGTGGAAAGATCCTTGTTGAAGTCCTTGGGTaGCTCGAAGATGAGCACGAT +
Preference number: 4 (lower is better)
Translates to: RQPEAPLKTLMLLCGKILVEVLG*LEDEHD
Trigger: ATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAAC...AAGGATCTTTCCACACAGGAGCATGAGGGTCTTCAGCGGAGCCTCAGGCTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp TTTTCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATTGGTGGCTCCCACTaGTGGGAAGTGGCGCCGATG +
Preference number: 4 (lower is better)
Translates to: FSRKQTGEIGEQKAVMKAIGGSH*WEVAPM
Trigger: CATCGGCGCCACTTCCCAGCAGTGGGAGCCACCAAT...GGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp GGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAGTTTCAGAGCTGGTCTaGACATGCAGCTCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: GEIGEQKAVMKAMWPALGVSELV*TCSSAG
Trigger: GCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAAC...TCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGGCCTCCATCCCACCTaGCTGAGGGGCCCGAGCGCA +
Preference number: 4 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLGLHPT*LRGPSA
Trigger: TGCGCTCGGGCCCCTCAGCCAGGTGGGATGGAGGCC...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GTACTGACCTCTATACCCTCTGCCTCCAACACAGTCCCTAGACCAATAGCAGCAGCAGTGGTAGTCTCCTaGGGCCAGGTAGATGACACA +
Preference number: 4 (lower is better)
Translates to: VLTSIPSASNTVPRPIAAAVVVS*GQVDDT
Trigger: TGTGTCATCTACCTGGCCCCAGGAGACTACCACTGC...TGCTGCTATTGGTCTAGGGACTGTGTTGGAGGCAGAGGGTATAGAGGTCAGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp CATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATTCACCTGCCCAAAGGTaGGGATCTTGCCATCTGATG +
Preference number: 4 (lower is better)
Translates to: HSQDRHELWSCPYHWVPHSPAQR*GSCHLM
Trigger: CATCAGATGGCAAGATCCTCACCTTTGGGCAGGTGA...ATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR TCA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGAGGGACACCTCCCAGTaGCTAGCAAGTTTGGGCGGG +
Preference number: 4 (lower is better)
Translates to: EPTKVYIISHCPQKTLAERDTSQ*LASLGG
Trigger: CCCGCCCAAACTTGCTAGTCACTGGGAGGTGTCCCT...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp CATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGACAAAAGAGCTCTTTaGTCCATCGGGCCATGCCAG +
Preference number: 4 (lower is better)
Translates to: HSQDRHELWSCPYHWVPHDKRAL*SIGPCQ
Trigger: CTGGCATGGCCCGATGGATCAAAGAGCTCTTTTGTC...ATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
CDS-3UTR GCA 90 bp TCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 4 (lower is better)
Translates to: SQDRHELWSCPYHWVPHGSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...GCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp ACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGGTTTCTGAAGGAGTCTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 4 (lower is better)
Translates to: TVVQLIPFPGDQLVSEGVSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...GACTCCTTCAGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp TATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTAGGTTACGCCCTTTACCTTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 4 (lower is better)
Translates to: YWLEGPGRTPRSRLRPLPSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...AGGTAAAGGGCGTAACCTACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCAGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAA +
Preference number: 4 (lower is better)
Translates to: AESSYEGHVACSRKTVDPADLLP*LQPEVE
Trigger: TTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGC...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp AGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 4 (lower is better)
Translates to: RKQTGEIGEQKAVMKAMWIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...CCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp GAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGT +
Preference number: 4 (lower is better)
Translates to: EPTKVYIISHCPQKTLAEGADVR*SSQWGS
Trigger: ACTCCCCCACTGACTGGACCATCTCACATCGGCGCC...CTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp AGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGAGCCCTTGCTGTACCTaGGGCTGTTTGTGTGCAGGT +
Preference number: 4 (lower is better)
Translates to: RKQTGEIGEQKAVMKAMWSPCCT*GCLCAG
Trigger: ACCTGCACACAAACAGCCCCAGGTACAGCAAGGGCT...CCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp TCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCTTTCTGACACCTGCCTaGAGAGGCAATTTCTGTAAG +
Preference number: 4 (lower is better)
Translates to: SQDRHELWSCPYHWVPHGFLTPA*RGNFCK
Trigger: CTTACAGAAATTGCCTCTTCAGGCAGGTGTCAGAAA...GCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp AGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCAGTATGGAAATTTCTaGCACCTGCTCCGCCACAGC +
Preference number: 4 (lower is better)
Translates to: RKQTGEIGEQKAVMKAMWQYGNF*HLLRHS
Trigger: GCTGTGGCGGAGCAGGTGTCAGAAATTTCCATACTG...CCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
CDS-3UTR GCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGAGCGGATCTTCTGCCCTaGCTTCAGCCTGAAGTTGAA +
Preference number: 4 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERADLLP*LQPEVE
Trigger: TTCAACTTCAGGCTGAAGGCAGGGCAGAAGATCCGC...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp TTTTCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCCTAGAGGGAGCCCAGTaGTTCCCCAAAGCGGATCTT +
Preference number: 4 (lower is better)
Translates to: FSRKQTGEIGEQKAVMKALEGAQ*FPKADL
Trigger: AAGATCCGCTTTGGGGAAGCACTGGGCTCCCTCTAG...GGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 4 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp TGCAGGAGAAATTCATGGCATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCAGATGGTCCAGTCAGTaGGGGAGTGGAAGCAGTGGT +
Preference number: 4 (lower is better)
Translates to: CRRNSWHSQDRHELWSCPRWSSQ*GSGSSG
Trigger: ACCACTGCTTCCACTCCCCCACTGACTGGACCATCT...GGGACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCTCCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR TCA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCGACCACAGGCACGTaGCAGCAAACGCGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLATTGT*QQTRWH
Trigger: GTGCCAACGCGTTTGCTGTCACGTGCCTGTGGTCGC...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp GGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGATCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 4 (lower is better)
Translates to: GEIGEQKAVMKAMWPALGSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...TCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR GCA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCCATTGTAGGAGCCCTTaGTGTACCTGGGGCTGTTTG +
Preference number: 4 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPHCRSP*CTWGCL
Trigger: CAAACAGCCCCAGGTACAGCAAGGGCTCCTACAATG...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATAATACCCTCCACCTGTTaGCAACAGGATGGGCACAGG +
Preference number: 4 (lower is better)
Translates to: KVYIISHCPQKTLAEPRIIPSTC*QQDGHR
Trigger: CCTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTAT...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
CDS-3UTR GCA 90 bp TTTTCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCCTGTACTTCTCATACTaGCGGTACCCGGCATACCCT +
Preference number: 4 (lower is better)
Translates to: FSRKQTGEIGEQKAVMKALYFSY*RYPAYP
Trigger: AGGGTATGCCGGGTACCGGCAGTATGAGAAGTACAG...GGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATAATACAGGCTGTAGACTaGCCTCCGGAGCCAGTAAGG +
Preference number: 4 (lower is better)
Translates to: KVYIISHCPQKTLAEPRIIQAVD*PPEPVR
Trigger: CCTTACTGGCTCCGGAGGCCAGTCTACAGCCTGTAT...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS-3UTR CCA 90 bp TCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGAAGGTCTCGGTCAAAGTaGATACGGATAGAGCCCACA +
Preference number: 4 (lower is better)
Translates to: SNHTHPYSEKGSRSCPERRSRSK*IRIEPT
Trigger: TGTGGGCTCTATCCGTATCCACTTTGACCGAGACCT...TCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp AGCCTCAGTCATGTTCACCCCAAAGGTCCAGATATACAGGCTGTAGACTGGCCTCGGACAGGAGCAGTATaGAAATTTCTGACACCTGCT +
Preference number: 4 (lower is better)
Translates to: SLSHVHPKGPDIQAVDWPRTGAV*KFLTPA
Trigger: AGCAGGTGTCAGAAATTTCCATACTGCTCCTGTCCG...AGGCCAGTCTACAGCCTGTATATCTGGACCTTTGGGGTGAACATGACTGAGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
CDS-3UTR GCA 90 bp ATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATAGAAATTTCTGACACCTaGCTGAAGAGGCAATTTCTG +
Preference number: 4 (lower is better)
Translates to: IDMNSGLVPTTGFPMACIEISDT*LKRQFL
Trigger: CAGAAATTGCCTCTTCAGGCAGGTGTCAGAAATTTC...TATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCGTTGAAGTCCTTGGGTaGCTCGAAGATGAGCACGAT +
Preference number: 4 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPVEVLG*LEDEHD
Trigger: ATCGTGCTCATCTTCGAGGCACCCAAGGACTTCAAC...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp ATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGGAATGCCCTCCTTGTTaGCATGTGTTACAAAGCTCA +
Preference number: 4 (lower is better)
Translates to: IGEQKAVMKAMWPALGRQECPPC*HVLQSS
Trigger: TGAGCTTTGTAACACATGCCAACAAGGAGGGCATTC...CTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp TCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGTACTGAATGCCCTCCTTGTTaGCATGTGTTACAAAGCTCA +
Preference number: 4 (lower is better)
Translates to: SCPYHWVPHGLHTCFLGTECPPC*HVLQSS
Trigger: TGAGCTTTGTAACACATGCCAACAAGGAGGGCATTC...AGTACCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp CATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGAAATTTCTGACACCTaGCTGAAGAGGCAATTTCTG +
Preference number: 4 (lower is better)
Translates to: HSQDRHELWSCPYHWVPHEISDT*LKRQFL
Trigger: CAGAAATTGCCTCTTCAGGCAGGTGTCAGAAATTTC...ATGGGGAACCCAGTGGTAGGGACAAGACCAGAGTTCATGTCGATCTTGGGAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CCA 90 bp CAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGAGAATGCCCTCCTTGTTaGCATGTGTTACAAAGCTCA +
Preference number: 4 (lower is better)
Translates to: QRSTSLVIVLRRHWQSPGECPPC*HVLQSS
Trigger: TGAGCTTTGTAACACATGCCAACAAGGAGGGCATTC...TCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR GCA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGTCAGAGTTCTTCACCTaGCCAAAGGTGAGGATCTTG +
Preference number: 4 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLSEFFT*PKVRIL
Trigger: CAAGATCCTCACCTTTGGGCAGGTGAAGAACTCTGA...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
ENSMUST00000202283.5
CDS CCA 90 bp AGTGGAGGATGGTCAGCGGCCAGGAGCGCAGTTTCAGAGCTGGTCTaGACATGCAGCTCAGCTGGCCTAGCCTCCGCCGTAGGGCCAGCT +
Preference number: 5 (lower is better)
Translates to: SGGWSAARSAVSELV*TCSSAGLASAVGPA
Trigger: AGCTGGCCCTACGGCGGAGGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGCTCCTGGCCGCTGACCATCCTCCACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS TCA 90 bp ATTTATACAGGGACACCCTGCTCATGGGCCTCCATCCCACCTGGCTaGGGGGCCCGAGCGCACGGAAGGGCAGGAGGTAGTGGAGGATGG +
Preference number: 5 (lower is better)
Translates to: IYTGTPCSWASIPPG*GARAHGRAGGSGGW
Trigger: CCATCCTCCACTACCTCCTGCCCTTCCGTGCGCTCGGGCCCCTCAGCCAGGTGGGATGGAGGCCCATGAGCAGGGTGTCCCTGTATAAAT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 90 bp CTGGACATGCAGCTCAGCTGGCCTAGCCTCCGCCGTAGGGCCAGCTaGGGAAAGTACAACCATTTCGCTGCTGCTTGGAGCTCCGGTCCT +
Preference number: 5 (lower is better)
Translates to: LDMQLSWPSLRRRAS*GKYNHFAAAWSSGP
Trigger: AGGACCGGAGCTCCAAGCAGCAGCGAAATGGTTGTACTTTCCCCAGCTGGCCCTACGGCGGAGGCTAGGCCAGCTGAGCTGCATGTCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 90 bp GGCCAGGAGCGCAGTTTCAGAGCTGGTCTGGACATGCAGCTCAGCTaGCCTAGCCTCCGCCGTAGGGCCAGCTGGGGAAAGTACAACCAT +
Preference number: 5 (lower is better)
Translates to: GQERSFRAGLDMQLS*PSLRRRASWGKYNH
Trigger: ATGGTTGTACTTTCCCCAGCTGGCCCTACGGCGGAGGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGCTCCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 90 bp GGGGCTGTTTGTGTGCAGGTCCTGGGAAGTGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGG +
Preference number: 5 (lower is better)
Translates to: GAVCVQVLGSGADVR*SSQWGSGSSGSLLG
Trigger: CCCCAGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGGACCTGCACACAAACAGCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS CCA 90 bp CCACATTGGTGGCTCCCACTGCTGGGAAGTGGCGCCGATGTGAGATaGTCCAGTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCCTGGGG +
Preference number: 5 (lower is better)
Translates to: PHWWLPLLGSGADVR*SSQWGSGSSGSLLG
Trigger: CCCCAGGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGCAGTGGGAGCCACCAATGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp CTTGGGTGCCTCGAAGATGAGCACGATGGTGGAGCCCAGGTTGAACTCCCCCAGCCATTTCGCTGCTGCTaGGAGCTCCGGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: LGCLEDEHDGGAQVELPQPFRCC*ELRSWL
Trigger: CAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATGG...CTGGGGGAGTTCAACCTGGGCTCCACCATCGTGCTCATCTTCGAGGCACCCAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071829.12
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp GTGGAGCCCAGGTTGAACTCCCCCAGGGGCTCACCCTTGCGCATGGGAATGCCCCCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: VEPRLNSPRGSPLRMGMPPKVRI*PSDGLV
Trigger: GACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...GGGCATTCCCATGCGCAAGGGTGAGCCCCTGGGGGAGTTCAACCTGGGCTCCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS-3UTR CAA 90 bp GTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCG +
Preference number: 5 (lower is better)
Translates to: VPSRHLTLCTLREPCDGRAFSLK*KSLGAS
Trigger: CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGC...CCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS TCA 90 bp AGAGCCCACATTGGTGGCTCCCACTGCTGGGAAGTGGCGCCGATGTaGGATGGTCCAGTCAGTGGGGGAGTGGAAGCAGTGGTAGTCTCC +
Preference number: 5 (lower is better)
Translates to: RAHIGGSHCWEVAPM*DGPVSGGVEAVVVS
Trigger: GGAGACTACCACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGCAGTGGGAGCCACCAATGTGGGCTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp ACAGGCAATCTTATAAGGTCAGCCCCGCAGTGCCCCTCACCCAGACAGCCTGAGCCATTTCGCTGCTGCTaGGAGCTCCGGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: TGNLIRSAPQCPSPRQPEPFRCC*ELRSWL
Trigger: CAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATGG...CTCAGGCTGTCTGGGTGAGGGGCACTGCGGGGCTGACCTTATAAGATTGCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp CCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGGGTTGTACCTGGGGCTGTTaGTGTGCAGGTCTCGGTCAA +
Preference number: 5 (lower is better)
Translates to: PSRHLTLCTLREPCDGRGCTWGC*CAGLGQ
Trigger: TTGACCGAGACCTGCACACAAACAGCCCCAGGTACA...ACCCCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS GCA 90 bp CCTGTACTTCTCATACTGCCGGTACCCGGCATACCCTCCACCTGTTaGCAACAGGATGGGCACAGGGCGCAGCAGGAACAAGGATCGGAC +
Preference number: 5 (lower is better)
Translates to: PVLLILPVPGIPSTC*QQDGHRAQQEQGSD
Trigger: GTCCGATCCTTGTTCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTATGCCGGGTACCGGCAGTATGAGAAGTACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS CCA 90 bp CATACTGCCGGTACCCGGCATACCCTCCACCTGTTGCCAACAGGATaGGCACAGGGCGCAGCAGGAACAAGGATCGGACAGGAGCAGTAT +
Preference number: 5 (lower is better)
Translates to: HTAGTRHTLHLLPTG*AQGAAGTRIGQEQY
Trigger: ATACTGCTCCTGTCCGATCCTTGTTCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTATGCCGGGTACCGGCAGTATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
CDS CCA 90 bp TGGATACGGATAGAGCCCACATTGGTGGCTCCCACTGCTGGGAAGTaGCGCCGATGTGAGATGGTCCAGTCAGTGGGGGAGTGGAAGCAG +
Preference number: 5 (lower is better)
Translates to: WIRIEPTLVAPTAGK*RRCEMVQSVGEWKQ
Trigger: CTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGCAGTGGGAGCCACCAATGTGGGCTCTATCCGTATCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp GTGCCCAGCAGGCACCTCACCCTGTGCACATTGAGAGAGCCCTGTGACGGGAGGCTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGC +
Preference number: 5 (lower is better)
Translates to: VPSRHLTLCTLREPCDGRLKLKS*GASKMS
Trigger: GCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAG...CCTCCCGTCACAGGGCTCTCTCAATGTGCACAGGGTGAGGTGCCTGCTGGGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp GTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGGTTTCTGAAGGAGTCACTCCATTTCGCTGCTGCTaGGAGCTCCGGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: VVQLIPFPGDQLVSEGVTPFRCC*ELRSWL
Trigger: CAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATGG...AGTGACTCCTTCAGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000197787.5
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp CTAGAGGGTGTGGTAGTACACAGCCAGGAGTTAGGGGTGGGAGGCTCTGGCTTGTGTACCTGGGGCTGTTaGTGTGCAGGTCCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: LEGVVVHSQELGVGGSGLCTWGC*CAGPGK
Trigger: CTTCCCAGGACCTGCACACAAACAGCCCCAGGTACA...CAAGCCAGAGCCTCCCACCCCTAACTCCTGGCTGTGTACTACCACACCCTCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS-3UTR CAA 90 bp CATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACCATACCCTCCACCTGTaGCCAACAGGATGGGCACAG +
Preference number: 5 (lower is better)
Translates to: HVACSRKTVDPQSVPSRHHTLHL*PTGWAQ
Trigger: CTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTATG...GTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
CDS-3UTR CAA 90 bp GCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCCCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: AMWPALGRQWIHSLCPAGPKVRI*PSDGLV
Trigger: CACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...GCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202283.5
CDS GCA 90 bp TCCAAGCCCAGCTTCTCAAGCTTCCGTTCCCTGTACTTCTCATACTaGCGGTACCCGGCATACCCTCCACCTGTTGCCAACAGGATGGGC +
Preference number: 5 (lower is better)
Translates to: SKPSFSSFRSLYFSY*RYPAYPPPVANRMG
Trigger: GCCCATCCTGTTGGCAACAGGTGGAGGGTATGCCGGGTACCGGCAGTATGAGAAGTACAGGGAACGGAAGCTTGAGAAGCTGGGCTTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp ATGACACAGTGGTACAGCTCATTCCCTTCCCGGGTGACCAGCTGGTTTCTGAAGCCATTTCGCTGCTGCTaGGAGCTCCGGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: MTQWYSSFPSRVTSWFLKPFRCC*ELRSWL
Trigger: CAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATGG...CTTCAGAAACCAGCTGGTCACCCGGGAAGGGAATGAGCTGTACCACTGTGTCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000197787.5
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp CCTGAGAGACCCAGAACCTCTCCTCTGCACCCATGGACAGGCAATCTTATAAGGCGGATAGAGCCCACATaGGTGGCTCCCACTGCTGGG +
Preference number: 5 (lower is better)
Translates to: PERPRTSPLHPWTGNLIRRIEPT*VAPTAG
Trigger: CCCAGCAGTGGGAGCCACCAATGTGGGCTCTATCCG...CCTTATAAGATTGCCTGTCCATGGGTGCAGAGGAGAGGTTCTGGGTCTCTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp GGTCCTCTGTATTGGCTCGAGGGCCCAGGAAGGACTCCAAGGAGTAGGTTACGCCCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTG +
Preference number: 5 (lower is better)
Translates to: GPLYWLEGPGRTPRSRLRPKVRI*PSDGLV
Trigger: CACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...GCGTAACCTACTCCTTGGAGTCCTTCCTGGGCCCTCGAGCCAATACAGAGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp GCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGCATACCCTCCACCTGTaGCCAACAGGATGGGCACAG +
Preference number: 5 (lower is better)
Translates to: AVMKAMWPALGRQWIHSLHTLHL*PTGWAQ
Trigger: CTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTATG...CAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
CDS-3UTR CAA 90 bp GAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCGGAATGCCCTCCTTGTaGGCATGTGTTACAAAGCTC +
Preference number: 5 (lower is better)
Translates to: EGHVACSRKTVDPQSVPSGMPSL*ACVTKL
Trigger: GAGCTTTGTAACACATGCCAACAAGGAGGGCATTCC...GCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp AGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCA +
Preference number: 5 (lower is better)
Translates to: RKQTGEIGEQKAVMKAMWMVEPR*NSPRGS
Trigger: TGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCAT...CCACATGGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp GGGTCAAATCACACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCG +
Preference number: 5 (lower is better)
Translates to: GSNHTHPYSEKGSRSCPEAFSLK*KSLGAS
Trigger: CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGC...CTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGTGTGATTTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp CTCTGGTCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTACCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: LWSCPYHWVPHGLHTCFLPKVRI*PSDGLV
Trigger: GACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...TAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGACCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp GAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCATGGGAATGCCCTCCTaGTTGGCATGTGTTACAAAG +
Preference number: 5 (lower is better)
Translates to: EGHVACSRKTVDPQSVPSMGMPS*LACVTK
Trigger: CTTTGTAACACATGCCAACAAGGAGGGCATTCCCAT...GCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp TGGCCTGCTCTAGGAAGACAGTGGATCCACAGTCTGTGCCCAGCAGGCACCTCAATGGGAATGCCCTCCTaGTTGGCATGTGTTACAAAG +
Preference number: 5 (lower is better)
Translates to: WPALGRQWIHSLCPAGTSMGMPS*LACVTK
Trigger: CTTTGTAACACATGCCAACAAGGAGGGCATTCCCAT...TGAGGTGCCTGCTGGGCACAGACTGTGGATCCACTGTCTTCCTAGAGCAGGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp TGCAGGAGAAATTCATGGCATTCCCAAGATCGACATGAACTCTGGTCTTGTCCCATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCA +
Preference number: 5 (lower is better)
Translates to: CRRNSWHSQDRHELWSCPMVEPR*NSPRGS
Trigger: TGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCAT...GGGACAAGACCAGAGTTCATGTCGATCTTGGGAATGCCATGAATTTCTCCTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp TCTTGTCCCTACCACTGGGTTCCCCATGGCCTGCATACCTGTTTTCTAGGTACTGCCTTCAGCCTGAAGTaGAAGTCCTTGGGTGCCTCG +
Preference number: 5 (lower is better)
Translates to: SCPYHWVPHGLHTCFLGTAFSLK*KSLGAS
Trigger: CGAGGCACCCAAGGACTTCAACTTCAGGCTGAAGGC...AGTACCTAGAAAACAGGTATGCAGGCCATGGGGAACCCAGTGGTAGGGACAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS TCA 90 bp GAGCCAGTAAGGAAGTTCTACTTGGTTGAGGCGACCACAGGCACGTaGCAGCAAACGCGTTGGCACAGATTTATACAGGGACACCCTGCT +
Preference number: 5 (lower is better)
Translates to: EPVRKFYLVEATTGT*QQTRWHRFIQGHPA
Trigger: AGCAGGGTGTCCCTGTATAAATCTGTGCCAACGCGTTTGCTGTCACGTGCCTGTGGTCGCCTCAACCAAGTAGAACTTCCTTACTGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCATGTACCTGGGGCTGTTaGTGTGCAGGTCTCGGTCAA +
Preference number: 5 (lower is better)
Translates to: AESSYEGHVACSRKTVDPCTWGC*CAGLGQ
Trigger: TTGACCGAGACCTGCACACAAACAGCCCCAGGTACA...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp ACCCACCCATACTCTGAAAAGGGGTCTAGGTCCTGTCCTGAGAGACCCAGAACCGGAATGCCCTCCTTGTaGGCATGTGTTACAAAGCTC +
Preference number: 5 (lower is better)
Translates to: THPYSEKGSRSCPERPRTGMPSL*ACVTKL
Trigger: GAGCTTTGTAACACATGCCAACAAGGAGGGCATTCC...GGTTCTGGGTCTCTCAGGACAGGACCTAGACCCCTTTTCAGAGTATGGGTGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATAATGGTGGAGCCCAGGTaGAACTCCCCCAGGGGCTCA +
Preference number: 5 (lower is better)
Translates to: KVYIISHCPQKTLAEPRIMVEPR*NSPRGS
Trigger: TGAGCCCCTGGGGGAGTTCAACCTGGGCTCCACCAT...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp TTTTCCAGAAAGCAGACGGGTGAAATTGGGGAGCAGAAAGCAGTTATGAAGGCCCATACCCTCCACCTGTaGCCAACAGGATGGGCACAG +
Preference number: 5 (lower is better)
Translates to: FSRKQTGEIGEQKAVMKAHTLHL*PTGWAQ
Trigger: CTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTATG...GGCCTTCATAACTGCTTTCTGCTCCCCAATTTCACCCGTCTGCTTTCTGGAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
ENSMUST00000142957.6
CDS-3UTR CAA 90 bp GCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGTGGATCCACTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGC +
Preference number: 5 (lower is better)
Translates to: AESSYEGHVACSRKTVDPLKLKS*GASKMS
Trigger: GCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAG...TGGATCCACTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp CCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCTGTACCTGGGGCTGTTaGTGTGCAGGTCTCGGTCAA +
Preference number: 5 (lower is better)
Translates to: PTKVYIISHCPQKTLAEPCTWGC*CAGLGQ
Trigger: TTGACCGAGACCTGCACACAAACAGCCCCAGGTACA...GGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp ATTGGGGAGCAGAAAGCAGTTATGAAGGCCATGTGGCCTGCTCTAGGAAGACAGGGAATGCCCTCCTTGTaGGCATGTGTTACAAAGCTC +
Preference number: 5 (lower is better)
Translates to: IGEQKAVMKAMWPALGRQGMPSL*ACVTKL
Trigger: GAGCTTTGTAACACATGCCAACAAGGAGGGCATTCC...CTGTCTTCCTAGAGCAGGCCACATGGCCTTCATAACTGCTTTCTGCTCCCCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS TCA 90 bp GGCGCAGCAGGAACAAGGATCGGACAGGAGCAGTATGGAAATTTCTaGCACCTGCCTGAAGAGGCAATTTCTGTAAGGTCCCCAGAAAAT +
Preference number: 5 (lower is better)
Translates to: GAAGTRIGQEQYGNF*HLPEEAISVRSPEN
Trigger: ATTTTCTGGGGACCTTACAGAAATTGCCTCTTCAGGCAGGTGTCAGAAATTTCCATACTGCTCCTGTCCGATCCTTGTTCCTGCTGCGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGCCATTTCGCTGCTGCTaGGAGCTCCGGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLPFRCC*ELRSWL
Trigger: CAGCCAGGACCGGAGCTCCAAGCAGCAGCGAAATGG...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000202283.5
CDS-3UTR CAA 90 bp AAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGATACCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: KVYIISHCPQKTLAEPRIPKVRI*PSDGLV
Trigger: GACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...TATCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp CAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGGCAGAGCCCAGGACTGAAGTTGAAGTCCTaGGGTGCCTCGAAGATGAGC +
Preference number: 5 (lower is better)
Translates to: QRSTSLVIVLRRHWQSPGLKLKS*GASKMS
Trigger: GCTCATCTTCGAGGCACCCAAGGACTTCAACTTCAG...TCCTGGGCTCTGCCAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061895.16
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS TCA 90 bp AACAAGGATCGGACAGGAGCAGTATGGAAATTTCTGACACCTGCCTaGAGAGGCAATTTCTGTAAGGTCCCCAGAAAATGGCGTGTGGCA +
Preference number: 5 (lower is better)
Translates to: NKDRTGAVWKFLTPA*RGNFCKVPRKWRVA
Trigger: TGCCACACGCCATTTTCTGGGGACCTTACAGAAATTGCCTCTTCAGGCAGGTGTCAGAAATTTCCATACTGCTCCTGTCCGATCCTTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS-3UTR CAA 90 bp TTCTTAGAGCCTACAAAGGTCTACATCATTAGTCATTGTCCTCAGAAGACACTGCCAAAGGTGAGGATCTaGCCATCTGATGGGCTGGTC +
Preference number: 5 (lower is better)
Translates to: FLEPTKVYIISHCPQKTLPKVRI*PSDGLV
Trigger: GACCAGCCCATCAGATGGCAAGATCCTCACCTTTGG...CAGTGTCTTCTGAGGACAATGACTAATGATGTAGACCTTTGTAGGCTCTAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061895.16
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000142779.8
CDS TCA 72 bp GGGACACCCTGCTCATGGGCCTCCATCCCACCTGGCTaGGGGGCCCGAGCGCACGGAAGGGCAGGAGGTAGT +
Preference number: 6 (lower is better)
Translates to: GTPCSWASIPPG*GARAHGRAGGS
Trigger: ACTACCTCCTGCCCTTCCGTGCGCTCGGGCCCCTCAGCCAGGTGGGATGGAGGCCCATGAGCAGGGTGTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 72 bp GCCCGAGCGCACGGAAGGGCAGGAGGTAGTGGAGGATaGTCAGCGGCCAGGAGCGCAGTTTCAGAGCTGGTC +
Preference number: 6 (lower is better)
Translates to: ARAHGRAGGSGG*SAARSAVSELV
Trigger: GACCAGCTCTGAAACTGCGCTCCTGGCCGCTGACCATCCTCCACTACCTCCTGCCCTTCCGTGCGCTCGGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 72 bp CGCAGTTTCAGAGCTGGTCTGGACATGCAGCTCAGCTaGCCTAGCCTCCGCCGTAGGGCCAGCTGGGGAAAG +
Preference number: 6 (lower is better)
Translates to: RSFRAGLDMQLS*PSLRRRASWGK
Trigger: CTTTCCCCAGCTGGCCCTACGGCGGAGGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 72 bp TGGTCAGCGGCCAGGAGCGCAGTTTCAGAGCTGGTCTaGACATGCAGCTCAGCTGGCCTAGCCTCCGCCGTA +
Preference number: 6 (lower is better)
Translates to: WSAARSAVSELV*TCSSAGLASAV
Trigger: TACGGCGGAGGCTAGGCCAGCTGAGCTGCATGTCCAGACCAGCTCTGAAACTGCGCTCCTGGCCGCTGACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS CCA 72 bp CAGCTCAGCTGGCCTAGCCTCCGCCGTAGGGCCAGCTaGGGAAAGTACAACCATTTCGCTGCTGCTTGGAGC +
Preference number: 6 (lower is better)
Translates to: QLSWPSLRRRAS*GKYNHFAAAWS
Trigger: GCTCCAAGCAGCAGCGAAATGGTTGTACTTTCCCCAGCTGGCCCTACGGCGGAGGCTAGGCCAGCTGAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000071829.12
ENSMUST00000120591.8
ENSMUST00000135248.2
ENSMUST00000200390.5
ENSMUST00000202283.5
CDS TCA 72 bp ATTGGTGGCTCCCACTGCTGGGAAGTGGCGCCGATGTaGGATGGTCCAGTCAGTGGGGGAGTGGAAGCAGTG +
Preference number: 6 (lower is better)
Translates to: IGGSHCWEVAPM*DGPVSGGVEAV
Trigger: CACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGCAGTGGGAGCCACCAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS GCA 72 bp CTCATACTGCCGGTACCCGGCATACCCTCCACCTGTTaGCAACAGGATGGGCACAGGGCGCAGCAGGAACAA +
Preference number: 6 (lower is better)
Translates to: LILPVPGIPSTC*QQDGHRAQQEQ
Trigger: TTGTTCCTGCTGCGCCCTGTGCCCATCCTGTTGGCAACAGGTGGAGGGTATGCCGGGTACCGGCAGTATGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8
CDS CCA 72 bp TGTACCTGGGGCTGTTTGTGTGCAGGTCCTGGGAAGTaGCGCCGATGTGAGATGGTCCAGTCAGTGGGGGAG +
Preference number: 6 (lower is better)
Translates to: CTWGCLCAGPGK*RRCEMVQSVGE
Trigger: CTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGGACCTGCACACAAACAGCCCCAGGTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS CCA 72 bp ATAGAGCCCACATTGGTGGCTCCCACTGCTGGGAAGTaGCGCCGATGTGAGATGGTCCAGTCAGTGGGGGAG +
Preference number: 6 (lower is better)
Translates to: IEPTLVAPTAGK*RRCEMVQSVGE
Trigger: CTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGCAGTGGGAGCCACCAATGTGGGCTCTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000142779.8
CDS TCA 72 bp CTGTTTGTGTGCAGGTCCTGGGAAGTGGCGCCGATGTaGGATGGTCCAGTCAGTGGGGGAGTGGAAGCAGTG +
Preference number: 6 (lower is better)
Translates to: LFVCRSWEVAPM*DGPVSGGVEAV
Trigger: CACTGCTTCCACTCCCCCACTGACTGGACCATCTCACATCGGCGCCACTTCCCAGGACCTGCACACAAACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071829.12
CDS GCA 72 bp GGATCGGACAGGAGCAGTATGGAAATTTCTGACACCTaGTCCGCCACAGCACACCTCCACGAAGCGAGCGCA +
Preference number: 6 (lower is better)
Translates to: GSDRSSMEISDT*SATAHLHEASA
Trigger: TGCGCTCGCTTCGTGGAGGTGTGCTGTGGCGGAGCAGGTGTCAGAAATTTCCATACTGCTCCTGTCCGATCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142957.6
CDS GCA 72 bp AGCTTCTCAAGCTTCCGTTCCCTGTACTTCTCATACTaGCGGTACCCGGCATACCCTCCACCTGTTGCCAAC +
Preference number: 6 (lower is better)
Translates to: SFSSFRSLYFSY*RYPAYPPPVAN
Trigger: GTTGGCAACAGGTGGAGGGTATGCCGGGTACCGGCAGTATGAGAAGTACAGGGAACGGAAGCTTGAGAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061895.16
ENSMUST00000142779.8