Pregenerated sensors for PIRB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000058818Ensembl transcript IDs: ENSMUST00000078451.7
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTGACACTGATGAGCTCAAAAGTTCTAAGTCCAAAAGATTTGCCTaGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATGCAATTCCAA | + |
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Preference number: 1 (lower is better) Translates to: PDTDELKSSKSKRFA*LYLLSSEMEGMQFQ Trigger: TTGGAATTGCATGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGACTTAGAACTTTTGAGCTCATCAGTGTCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CAA 90 bp | GGCCTCTTACTCCTAGGCTATGTAGCTGAAAATGACCTTGACCTCTaGACCCTCCCTCCTTTCCACTCCTCTAAAATGCTGGGATTTCAG | + |
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Preference number: 2 (lower is better) Translates to: GLLLLGYVAENDLDL*TLPPFHSSKMLGFQ Trigger: CTGAAATCCCAGCATTTTAGAGGAGTGGAAAGGAGGGAGGGTCAAGAGGTCAAGGTCATTTTCAGCTACATAGCCTAGGAGTAAGAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR TCA 90 bp | CTAAGTCCAAAAGATTTGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAGGCAATGACCTTGACCTCTTaGCCCTCCCTCCTTTCCACT | + |
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Preference number: 2 (lower is better) Translates to: LSPKDLPGSTSLVLRWKAMTLTS*PSLLST Trigger: AGTGGAAAGGAGGGAGGGTCAAGAGGTCAAGGTCAT...TGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGACTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR GCA 90 bp | CACTCCTCTAAAATGCTGGGATTTCAGGTGTGTTCTACCCTGGCCTTTGGTGGCGGAATTGTGGGGCTGTaGAACAGTGCCTGTAAATTT | + |
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Preference number: 2 (lower is better) Translates to: HSSKMLGFQVCSTLAFGGGIVGL*NSACKF Trigger: AAATTTACAGGCACTGTTGCACAGCCCCACAATTCC...GCCACCAAAGGCCAGGGTAGAACACACCTGAAATCCCAGCATTTTAGAGGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR CCA 90 bp | GAGCCTCTGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGTCATCCAAAAGATTTGCCTaGCTCTACCTCCTTAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: EPLCGCWELNSGPLKEQSSKRFA*LYLLSS Trigger: AGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGA...TGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACAGAGGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR CCA 90 bp | GAGCCTCTGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGTCAGTTTTATTTACCTATTaGGTGTGGGAAGGACACCCA | + |
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Preference number: 2 (lower is better) Translates to: EPLCGCWELNSGPLKEQSVLFTY*VWEGHP Trigger: TGGGTGTCCTTCCCACACCCAATAGGTAAATAAAAC...TGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACAGAGGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR GCA 90 bp | GTGTTCCAGGCTGGCCTCTTACTCCTAGGCTATGTAGCTGAAAATGACCTTGACTCCACTCCTCTAAAATaGTGGGATTTCAGGTGTGTT | + |
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Preference number: 2 (lower is better) Translates to: VFQAGLLLLGYVAENDLDSTPLK*WDFRCV Trigger: AACACACCTGAAATCCCAGCATTTTAGAGGAGTGGA...GTCAAGGTCATTTTCAGCTACATAGCCTAGGAGTAAGAGGCCAGCCTGGAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR TCA 90 bp | AATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCAGCACTATGAAATTCACTAGATaGCTCACCATGGCCACAAAA | + |
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Preference number: 2 (lower is better) Translates to: NKIYPAGRGGARLFNPSTMKFTR*LTMATK Trigger: TTTTGTGGCCATGGTGAGTCATCTAGTGAATTTCAT...AGTGCTGGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR TCA 90 bp | AATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCAGCACTCCAAGCTTGGCCTATTaGTTCATTTTTAGAAAGGGT | + |
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Preference number: 2 (lower is better) Translates to: NKIYPAGRGGARLFNPSTPSLAY*FIFRKG Trigger: ACCCTTTCTAAAAATGAATCAATAGGCCAAGCTTGG...AGTGCTGGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR CCA 90 bp | GATTTGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATGCAATTCCAAGACTCCTCTAAAATGCTaGGATTTCAGGTGTGTTCTA | + |
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Preference number: 2 (lower is better) Translates to: DLPGSTSLVLRWKACNSKTPLKC*DFRCVL Trigger: TAGAACACACCTGAAATCCCAGCATTTTAGAGGAGT...CTTGGAATTGCATGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CAA 90 bp | GGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTCCTAGCTTTGTaGAGAAATATCATTAAAGTTAGCACTCAATGTAAAACCTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: GLCNSACKFSHFLAL*RNIIKVSTQCKTFP Trigger: AGGGAAGGTTTTACATTGAGTGCTAACTTTAATGATATTTCTCAACAAAGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CCA 72 bp | AGTGCAGTCACGTTTCCAAAAGTTCCCAGAGTCCCTTaGAGGTCTCTGCTAGGCATCCTGGCAGGCAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: SAVTFPKVPRVP*RSLLGILAGRG Trigger: CCCCCTGCCTGCCAGGATGCCTAGCAGAGACCTCCAAGGGACTCTGGGAACTTTTGGAAACGTGACTGCACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR CAA 90 bp | AATTCACTAGATGACTCACCATGGCCACAAAACAAATTCCCCTCGTCAGCCTCCAGTTCCCAGAGTCCCTaGGAGGTCTCTGCTAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: NSLDDSPWPQNKFPSSASSSQSP*EVSARH Trigger: ATGCCTAGCAGAGACCTCCAAGGGACTCTGGGAACT...GGAGGCTGACGAGGGGAATTTGTTTTGTGGCCATGGTGAGTCATCTAGTGAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR-3UTR CAA 90 bp | CTAAGTCCAAAAGATTTGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATCAGCCTCCTGTGGGTaGGAATTGTGGGGCTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: LSPKDLPGSTSLVLRWKASASCG*ELWGCA Trigger: TGCACAGCCCCACAATTCCAACCCACAGGAGGCTGA...TGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGACTTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR TCA 72 bp | CCAGAAGAGGGCATTCGATCCTATTACAGATGGTTGTaGGCCTCTGTGTGGTTGCTGGGAATTGAACTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PEEGIRSYYRWL*ASVWLLGIELR Trigger: CCTGAGTTCAATTCCCAGCAACCACACAGAGGCTCACAACCATCTGTAATAGGATCGAATGCCCTCTTCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR GCA 72 bp | CTCGTCAGCCTCCTGTGGGTTGGAATTGTGGGGCTGTaGAACAGTGCCTGTAAATTTTCTCATTTCCTAGCT | + |
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Preference number: 3 (lower is better) Translates to: LVSLLWVGIVGL*NSACKFSHFLA Trigger: AGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGAGGCTGACGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CCA 72 bp | GCTGGGATTTCAGGTGTGTTCTACCCTGGCCTTTGGTaGCTAATGTTTAAAACACTCTGTAGCCCAGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: AGISGVFYPGLW*LMFKTLCSPGW Trigger: CCAACCTGGGCTACAGAGTGTTTTAAACATTAGCCACCAAAGGCCAGGGTAGAACACACCTGAAATCCCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CCA 72 bp | AAATTCCCCTCGTCAGCCTCCTGTGGGTTGGAATTGTaGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATT | + |
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Preference number: 3 (lower is better) Translates to: KFPSSASCGLEL*GCATVPVNFLI Trigger: AATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGAGGCTGACGAGGGGAATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CCA 72 bp | AATGCTGGGATTTCAGGTGTGTTCTACCCTGGCCTTTaGTGGCTAATGTTTAAAACACTCTGTAGCCCAGGT | + |
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Preference number: 3 (lower is better) Translates to: NAGISGVFYPGL*WLMFKTLCSPG Trigger: ACCTGGGCTACAGAGTGTTTTAAACATTAGCCACCAAAGGCCAGGGTAGAACACACCTGAAATCCCAGCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CCA 72 bp | GATGAGCTCAAAAGTTCTAAGTCCAAAAGATTTGCCTaGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATG | + |
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Preference number: 3 (lower is better) Translates to: DELKSSKSKRFA*LYLLSSEMEGM Trigger: CATGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGACTTAGAACTTTTGAGCTCATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR TCA 72 bp | GGCAAGTGCCTTTCTTTACCTACTGAGCCATCTCACTaGGCAAACACATATACATACATACATACATACATA | + |
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Preference number: 3 (lower is better) Translates to: GKCLSLPTEPSH*ANTYTYIHTYI Trigger: TATGTATGTATGTATGTATGTATATGTGTTTGCTCAGTGAGATGGCTCAGTAGGTAAAGAAAGGCACTTGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | TTCCCCTCGTCAGCCTCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGAGAGCACTAGGTACTaGCCACAGCTGTGGGGCATT | + |
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Preference number: 4 (lower is better) Translates to: FPSSASCGLELWGCATVPESTRY*PQLWGI Trigger: AATGCCCCACAGCTGTGGTCAGTACCTAGTGCTCTC...AGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGAGGCTGACGAGGGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR GCA 90 bp | TTCCCCTCGTCAGCCTCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGGCAGCCTGATTGTTTaGTCCTTGGCCCTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: FPSSASCGLELWGCATVPGSLIV*SLALFC Trigger: GCAGAAGAGGGCCAAGGAGCAAACAATCAGGCTGCC...AGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGAGGCTGACGAGGGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | TTCCCCTCGTCAGCCTCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTCCAGTGTCAGTCTGCTaGCTAGAGTGCTGCATGATG | + |
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Preference number: 4 (lower is better) Translates to: FPSSASCGLELWGCATVPPVSVC*LECCMM Trigger: CATCATGCAGCACTCTAGCCAGCAGACTGACACTGG...AGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGAGGCTGACGAGGGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | CACTCCTCTAAAATGCTGGGATTTCAGGTGTGTTCTACCCTGGCCTTTGGTGGCGGGGCTTCCCCTGCCTaGGAGAGAGGAGATGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: HSSKMLGFQVCSTLAFGGGASPA*ERGDAA Trigger: AGCTGCATCTCCTCTCTCCCAGGCAGGGGAAGCCCC...GCCACCAAAGGCCAGGGTAGAACACACCTGAAATCCCAGCATTTTAGAGGAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR GCA 90 bp | CACTCCTCTAAAATGCTGGGATTTCAGGTGTGTTCTACCCTGGCCTTTGGTGGCCTGGGAGAGAGGAGATaGAGCTGCCCCCTGTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: HSSKMLGFQVCSTLAFGGLGERR*SCPLSE Trigger: CTCAGACAGGGGGCAGCTGCATCTCCTCTCTCCCAG...GCCACCAAAGGCCAGGGTAGAACACACCTGAAATCCCAGCATTTTAGAGGAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | CACTCCTCTAAAATGCTGGGATTTCAGGTGTGTTCTACCCTGGCCTTTGGTGGCGCTCCAGGGTGTCACTaGGCTGTGACCAACCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: HSSKMLGFQVCSTLAFGGAPGCH*AVTNQL Trigger: CAGCTGGTTGGTCACAGCCCAGTGACACCCTGGAGC...GCCACCAAAGGCCAGGGTAGAACACACCTGAAATCCCAGCATTTTAGAGGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | AATTCACTAGATGACTCACCATGGCCACAAAACAAATTCCCCTCGTCAGCCTCCCAGCTGCCCCCTGTCTaGGTGTCCTGCTGCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: NSLDDSPWPQNKFPSSASQLPPV*VSCCTA Trigger: AGCTGTGCAGCAGGACACTCAGACAGGGGGCAGCTG...GGAGGCTGACGAGGGGAATTTGTTTTGTGGCCATGGTGAGTCATCTAGTGAATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GAGCCTCTGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGTCACTGAATGCCCCTGTATaGGTTGGGGTTGTGGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: EPLCGCWELNSGPLKEQSLNAPV*VGVVGP Trigger: AGGACCCACAACCCCAACCCATACAGGGGCATTCAG...TGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACAGAGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | AGTCACGTTTCCAAAAGTTCCCAGAGTCCCTTGGAGGTCTCTGCTAGGCATCCTGGGATCTTCCTCAGGTaGTGTCCAGCTGTTCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: SHVSKSSQSPLEVSARHPGIFLR*CPAVQL Trigger: GAGCTGAACAGCTGGACACCACCTGAGGAAGATCCC...AGGATGCCTAGCAGAGACCTCCAAGGGACTCTGGGAACTTTTGGAAACGTGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GTAGCTGAAAATGACCTTGACCTCTTGACCCTCCCTCCTTTCCACTCCTCTAAACTTGGGAACAGCCTCTaGACGAGCAGCCGCCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: VAENDLDLLTLPPFHSSKLGNSL*TSSRQS Trigger: ACTCTGGCGGCTGCTCGTCCAGAGGCTGTTCCCAAG...TTTAGAGGAGTGGAAAGGAGGGAGGGTCAAGAGGTCAAGGTCATTTTCAGCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | CACATAAATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCCATGTCCTGCCTTCCTaGGCCTGGAGGGTTTCACCT | + |
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Preference number: 4 (lower is better) Translates to: HINKIYPAGRGGARLFNPHVLPS*AWRVSP Trigger: AGGTGAAACCCTCCAGGCTCAGGAAGGCAGGACATG...GGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATTTATGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GTAGCTGAAAATGACCTTGACCTCTTGACCCTCCCTCCTTTCCACTCCTCTAAACTGCATATCCATCTCTaGTTGGGGGTCACAGGGCCC | + |
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Preference number: 4 (lower is better) Translates to: VAENDLDLLTLPPFHSSKLHIHL*LGVTGP Trigger: GGGCCCTGTGACCCCCAACCAGAGATGGATATGCAG...TTTAGAGGAGTGGAAAGGAGGGAGGGTCAAGAGGTCAAGGTCATTTTCAGCTAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | CTAAGTCCAAAAGATTTGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATGTCCAGGGGCTCACTaGAGGCTGACCACTCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LSPKDLPGSTSLVLRWKACPGAH*RLTTQR Trigger: CCTCTGAGTGGTCAGCCTCCAGTGAGCCCCTGGACA...TGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGACTTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR GCA 90 bp | ATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCAGCACTTGGGAGCCACTAGAAGATATATaGTCTGTGTCCAGTGAGTTG | + |
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Preference number: 4 (lower is better) Translates to: IYPAGRGGARLFNPSTWEPLEDI*SVSSEL Trigger: CAACTCACTGGACACAGAGCATATATCTTCTAGTGG...CTCCCAAGTGCTGGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTGGACCCTGTCAGCACTaGGATCCAGAGGCTCAGAGT | + |
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Preference number: 4 (lower is better) Translates to: SCGLELWGCATVPVNFLIGPCQH*DPEAQS Trigger: ACTCTGAGCCTCTGGATCCCAGTGCTGACAGGGTCC...AATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | AGCCTCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCTTGGGCTAAAAGGCTaGGTGTCCAGTAGTGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SLLWVGIVGLCNSACKFSLGLKG*VSSSVL Trigger: CAGGACACTACTGGACACCCAGCCTTTTAGCCCAAG...AGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGAGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | ATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCAGCACTTGGGAGGAGATGAGTATTTGTTaGAGAGCACTAGGTACTGAC | + |
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Preference number: 4 (lower is better) Translates to: IYPAGRGGARLFNPSTWEEMSIC*RALGTD Trigger: GTCAGTACCTAGTGCTCTCCAACAAATACTCATCTC...CTCCCAAGTGCTGGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | CACATAAATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCGCTCCACAGGGGCACTaGCAGATGACAAGAGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: HINKIYPAGRGGARLFNPAPQGH*QMTRGR Trigger: TCTACCTCTTGTCATCTGCCAGTGCCCCTGTGGAGC...GGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATTTATGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GTGTTCCAGGCTGGCCTCTTACTCCTAGGCTATGTAGCTGAAAATGACCTTGACTATAGGCTTTCTTCCTaGGTGGCAGCAGCTGGGTTG | + |
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Preference number: 4 (lower is better) Translates to: VFQAGLLLLGYVAENDLDYRLSS*VAAAGL Trigger: CAACCCAGCTGCTGCCACCCAGGAAGAAAGCCTATA...GTCAAGGTCATTTTCAGCTACATAGCCTAGGAGTAAGAGGCCAGCCTGGAACAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCCTCTGTGTGGTTGCTGGGAATaGAACTCAGGACCTCTGAAAGAGCAGTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TDGCEPLCGCWE*NSGPLKEQSVL Trigger: GAGCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACAGAGGCTCACAACCATCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | GAGCCTCTGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGAAAGAGCAGTCACCACAGACACTCCAATaGGAGCCTTCAGGTACATAT | + |
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Preference number: 4 (lower is better) Translates to: EPLCGCWELNSGPLKEQSPQTLQ*EPSGTY Trigger: ATATGTACCTGAAGGCTCTCATTGGAGTGTCTGTGG...TGACTGCTCTTTCAGAGGTCCTGAGTTCAATTCCCAGCAACCACACAGAGGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | AGTCACGTTTCCAAAAGTTCCCAGAGTCCCTTGGAGGTCTCTGCTAGGCATCCTGGGCTCTTCAGCTCCTaGAGAAAGTTGCAAGTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SHVSKSSQSPLEVSARHPGLFSS*RKLQVF Trigger: AAAGACTTGCAACTTTCTTCAGGAGCTGAAGAGCCC...AGGATGCCTAGCAGAGACCTCCAAGGGACTCTGGGAACTTTTGGAAACGTGACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GATTTGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATGCAATTCCAAGGGGTTGGGCCTCTTCTaGAGTTCTCCTTTCCTGGTT | + |
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Preference number: 4 (lower is better) Translates to: DLPGSTSLVLRWKACNSKGLGLF*SSPFLV Trigger: AACCAGGAAAGGAGAACTCCAGAAGAGGCCCAACCC...CTTGGAATTGCATGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | ATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTCCTAGCTTTGTTGGGTTTCGATGGGTCCTaGGACTGTGAGCTCCACAGG | + |
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Preference number: 4 (lower is better) Translates to: IVGLCNSACKFSHFLALLGFDGS*DCELHR Trigger: CCTGTGGAGCTCACAGTCTCAGGACCCATCGAAACC...CAACAAAGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | AATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCAGCACTGTTGTTCCCTTGACATaGCAGAAGGTGAGACATGTC | + |
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Preference number: 4 (lower is better) Translates to: NKIYPAGRGGARLFNPSTVVPLT*QKVRHV Trigger: GACATGTCTCACCTTCTGTCATGTCAAGGGAACAAC...AGTGCTGGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GTGTTCCAGGCTGGCCTCTTACTCCTAGGCTATGTAGCTGAAAATGACCTTGACCCACGAGAGCTTCTGTaGTCCTTCTACAGTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: VFQAGLLLLGYVAENDLDPRELL*SFYSQN Trigger: ATTCTGACTGTAGAAGGACCACAGAAGCTCTCGTGG...GTCAAGGTCATTTTCAGCTACATAGCCTAGGAGTAAGAGGCCAGCCTGGAACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | GATTTGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAGGCATGCAATTCCAAGAGGTCACAGCACTCATaGAGAATTCTGCCTGGGACT | + |
|
Preference number: 4 (lower is better) Translates to: DLPGSTSLVLRWKACNSKRSQHS*RILPGT Trigger: AGTCCCAGGCAGAATTCTCCATGAGTGCTGTGACCT...CTTGGAATTGCATGCCTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR GCA 90 bp | AGACACACCAGAAGAGGGCATTCGATCCTATTACAGATGGTTGTGAGCCTCTGTACTCCATCCTCAGTTTaGATGTCCTCCACTGAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: RHTRRGHSILLQMVVSLCTPSSV*MSSTEA Trigger: TGCTTCAGTGGAGGACATGCAAACTGAGGATGGAGT...ACAGAGGCTCACAACCATCTGTAATAGGATCGAATGCCCTCTTCTGGTGTGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR GCA 90 bp | GGCTATGTAGCTGAAAATGACCTTGACCTCTTGACCCTCCCTCCTTTCCACTCCTCCTTGGCCCTCTTCTaGTTGTTCATATTCTGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: GYVAENDLDLLTLPPFHSSLALF*LFIFCV Trigger: AACACAGAATATGAACAAGCAGAAGAGGGCCAAGGA...GGAGTGGAAAGGAGGGAGGGTCAAGAGGTCAAGGTCATTTTCAGCTACATAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTGGTGATCACAGATCCTaGTTCAGCCTTGATGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SCGLELWGCATVPVNFLIGDHRS*FSLDGW Trigger: CCAACCATCAAGGCTGAACCAGGATCTGTGATCACC...AATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | AGTCACGTTTCCAAAAGTTCCCAGAGTCCCTTGGAGGTCTCTGCTAGGCATCCTGCAGTACTGACAGCCTaGGTTCATAGTATTCATAGA | + |
|
Preference number: 4 (lower is better) Translates to: SHVSKSSQSPLEVSARHPAVLTA*VHSIHR Trigger: TCTATGAATACTATGAACCCAGGCTGTCAGTACTGC...AGGATGCCTAGCAGAGACCTCCAAGGGACTCTGGGAACTTTTGGAAACGTGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTAAGTCTGAGGCACAGTaGAGTGTCATGTTCCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SCGLELWGCATVPVNFLIKSEAQ*SVMFPP Trigger: TGGAGGGAACATGACACTCCACTGTGCCTCAGACTT...AATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | GTAGCTGAAAATGACCTTGACCTCTTGACCCTCCCTCCTTTCCACTCCTCTAAAATGCTCTGTGTCCAGTaGGTTGCCGAATTTCTTATC | + |
|
Preference number: 4 (lower is better) Translates to: VAENDLDLLTLPPFHSSKMLCVQ*VAEFLI Trigger: GATAAGAAATTCGGCAACTCACTGGACACAGAGCAT...TTTAGAGGAGTGGAAAGGAGGGAGGGTCAAGAGGTCAAGGTCATTTTCAGCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | ATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTCCTAGCTTTGTTGGGAGACCACAGAGTCTaGCTGTACTCTGAGGATAGG | + |
|
Preference number: 4 (lower is better) Translates to: IVGLCNSACKFSHFLALLGDHRV*LYSEDR Trigger: CCTATCCTCAGAGTACAGCCAGACTCTGTGGTCTCC...CAACAAAGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTAGAGGCGGTACTCATTaGCTCCAATTGTCTCTTCAC | + |
|
Preference number: 4 (lower is better) Translates to: SCGLELWGCATVPVNFLIRGGTH*LQLSLH Trigger: GTGAAGAGACAATTGGAGCCAATGAGTACCGCCTCT...AATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | AGACACACCAGAAGAGGGCATTCGATCCTATTACAGATGGTTGTGAGCCTCTGTAGAGTAATTATACTGTaGGTCTTGTGTCCACGAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RHTRRGHSILLQMVVSLCRVIIL*VLCPRE Trigger: CTCTCGTGGACACAAGACTCACAGTATAATTACTCT...ACAGAGGCTCACAACCATCTGTAATAGGATCGAATGCCCTCTTCTGGTGTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | ATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTCCTAGCTTTGTTGTCCCCTGACACCAGATaGTCATTGCTCTTTTGGAGG | + |
|
Preference number: 4 (lower is better) Translates to: IVGLCNSACKFSHFLALLSPDTR*SLLFWR Trigger: CCTCCAAAAGAGCAATGACCATCTGGTGTCAGGGGA...CAACAAAGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | ATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTCCTAGCTTTGTTGGGAGTTCTCCTTTCCTaGTTATGGGCTCTTCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: IVGLCNSACKFSHFLALLGVLLS*LWALQL Trigger: GAGCTGAAGAGCCCATAACCAGGAAAGGAGAACTCC...CAACAAAGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR TCA 90 bp | ATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTCCTAGCTTTGTTGGTCAGAATGAACTTGTaGTCGTTGTGCCAGGACTCA | + |
|
Preference number: 4 (lower is better) Translates to: IVGLCNSACKFSHFLALLVRMNL*SLCQDS Trigger: TGAGTCCTGGCACAACGATCACAAGTTCATTCTGAC...CAACAAAGCTAGGAAATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CCA 90 bp | TCCTGTGGGTTGGAATTGTGGGGCTGTGCAACAGTGCCTGTAAATTTTCTCATTTTGATGGTTGGTTTTTaGAGATTACCTGAGACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SCGLELWGCATVPVNFLILMVGF*RLPETR Trigger: CCTGGTCTCAGGTAATCTCCAAAAACCAACCATCAA...AATGAGAAAATTTACAGGCACTGTTGCACAGCCCCACAATTCCAACCCACAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| 3UTR CAA 72 bp | ACACTGATGAGCTCAAAAGTTCTAAGTCCAAAAGATTaGCCTGGCTCTACCTCCTTAGTTCTGAGATGGAAG | + |
|
Preference number: 4 (lower is better) Translates to: TLMSSKVLSPKD*PGSTSLVLRWK Trigger: CTTCCATCTCAGAACTAAGGAGGTAGAGCCAGGCAAATCTTTTGGACTTAGAACTTTTGAGCTCATCAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 90 bp | GGGTTTCACCTGGGCATAAGTCTCTCCCTGGGGATCTTCCTCAGGTaGTGTCCAGCTGTTCAGCTCCACTCCATCCTCAGTTTGCATGTC | + |
|
Preference number: 5 (lower is better) Translates to: GFHLGISLSLGIFLR*CPAVQLHSILSLHV Trigger: GACATGCAAACTGAGGATGGAGTGGAGCTGAACAGCTGGACACCACCTGAGGAAGATCCCCAGGGAGAGACTTATGCCCAGGTGAAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 90 bp | CCACTGAAGCATATAGGCTTTCTTCCTGGGTGGCAGCAGCTGGGTTaGGCCTCTTCTGGAGTTCTCCTTTCCTGGTTATGGGCTCTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: PLKHIGFLPGWQQLG*ASSGVLLSWLWALQ Trigger: CTGAAGAGCCCATAACCAGGAAAGGAGAACTCCAGAAGAGGCCCAACCCAGCTGCTGCCACCCAGGAAGAAAGCCTATATGCTTCAGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CAA 90 bp | CACACCAGAAGAGGGCATTCGATCCTATTACAGATGGTTGTGAGCCTCTGTGTGGTGGCAGCAGCTGGGTaGGGCCTCTTCTGGAGTTCT | + |
|
Preference number: 5 (lower is better) Translates to: HTRRGHSILLQMVVSLCVVAAAG*GLFWSS Trigger: AGAACTCCAGAAGAGGCCCAACCCAGCTGCTGCCAC...CACACAGAGGCTCACAACCATCTGTAATAGGATCGAATGCCCTCTTCTGGTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CAA 90 bp | AGTCACGTTTCCAAAAGTTCCCAGAGTCCCTTGGAGGTCTCTGCTAGGCATCCTCGGCAGCCTGATTGTTaGCTCCTTGGCCCTCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SHVSKSSQSPLEVSARHPRQPDC*LLGPLL Trigger: CAGAAGAGGGCCAAGGAGCAAACAATCAGGCTGCCG...AGGATGCCTAGCAGAGACCTCCAAGGGACTCTGGGAACTTTTGGAAACGTGACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 90 bp | TCCTCAGTTTGCATGTCCTCCACTGAAGCATATAGGCTTTCTTCCTaGGTGGCAGCAGCTGGGTTGGGCCTCTTCTGGAGTTCTCCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSVCMSSTEAYRLSS*VAAAGLGLFWSSPF Trigger: GAAAGGAGAACTCCAGAAGAGGCCCAACCCAGCTGCTGCCACCCAGGAAGAAAGCCTATATGCTTCAGTGGAGGACATGCAAACTGAGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CAA 90 bp | CACATAAATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCCATTGCTCCATGTCCTaGGGAACAGCCTCTGGACGA | + |
|
Preference number: 5 (lower is better) Translates to: HINKIYPAGRGGARLFNPHCSMS*GTASGR Trigger: TCGTCCAGAGGCTGTTCCCAAGGACATGGAGCAATG...GGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATTTATGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS GCA 90 bp | ATAGGTCACATCCTGGGACTCCCCAGATTCGGCAGCCTGATTGTTTaGTCCTTGGCCCTCTTCTGCTTGTTCATATTCTGTGTTCAGTTG | + |
|
Preference number: 5 (lower is better) Translates to: IGHILGLPRFGSLIV*SLALFCLFIFCVQL Trigger: CAACTGAACACAGAATATGAACAAGCAGAAGAGGGCCAAGGAGCAAACAATCAGGCTGCCGAATCTGGGGAGTCCCAGGATGTGACCTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS GCA 90 bp | CCACCAGCTCCAGGAGGTCACTGTAGCCTGATGATTTATACTGGGTaGTGTAGGAACATCGATATTGACCTGCATTACTCAGGTCTACAT | + |
|
Preference number: 5 (lower is better) Translates to: PPAPGGHCSLMIYTG*CRNIDIDLHYSGLH Trigger: ATGTAGACCTGAGTAATGCAGGTCAATATCGATGTTCCTACAGCACCCAGTATAAATCATCAGGCTACAGTGACCTCCTGGAGCTGGTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CAA 90 bp | CACATAAATAAAATATATCCAGCCGGGCGTGGTGGCGCACGCCTTTTTAATCCCTTGGCCCTCTTCTGCTaGTTCATATTCTGTGTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: HINKIYPAGRGGARLFNPLALFC*FIFCVQ Trigger: CTGAACACAGAATATGAACAAGCAGAAGAGGGCCAA...GGGATTAAAAAGGCGTGCGCCACCACGCCCGGCTGGATATATTTTATTTATGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS-3UTR CAA 90 bp | GTGTTCCAGGCTGGCCTCTTACTCCTAGGCTATGTAGCTGAAAATGACCTTGACAATGAGAATTCAGCCTaGTTTTCTGGCTTCTGTTTG | + |
|
Preference number: 5 (lower is better) Translates to: VFQAGLLLLGYVAENDLDNENSA*FSGFCL Trigger: CAAACAGAAGCCAGAAAACAAGGCTGAATTCTCATT...GTCAAGGTCATTTTCAGCTACATAGCCTAGGAGTAAGAGGCCAGCCTGGAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 90 bp | ATGGGCTCTTCAGCTCCTGAAGAAAGTTGCAAGTCTTTCTCTTTCTaGACATCTTTCCTGAATTTTCCCCGATGTCTTCGTCGAAGAAGA | + |
|
Preference number: 5 (lower is better) Translates to: MGSSAPEESCKSFSF*TSFLNFPRCLRRRR Trigger: TCTTCTTCGACGAAGACATCGGGGAAAATTCAGGAAAGATGTCCAGAAAGAGAAAGACTTGCAACTTTCTTCAGGAGCTGAAGAGCCCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS TCA 90 bp | CAGGGCTCGGTACTGTCCACTAGAAGATATATGCTCTGTGTCCAGTaGGTTGCCGAATTTCTTATCTTCCTTGGTGAGAATGAATTTATC | + |
|
Preference number: 5 (lower is better) Translates to: QGSVLSTRRYMLCVQ*VAEFLIFLGENEFI Trigger: GATAAATTCATTCTCACCAAGGAAGATAAGAAATTCGGCAACTCACTGGACACAGAGCATATATCTTCTAGTGGACAGTACCGAGCCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS TCA 72 bp | GTGAGGGTCATTCCAGGGTCCAGGATATGGCCTTGGTaGGTCAGCAGAGAGGGCTTCTTGGACAGCCCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: VRVIPGSRIWPW*VSREGFLDSPE Trigger: CTCAGGGCTGTCCAAGAAGCCCTCTCTGCTGACTCACCAAGGCCATATCCTGGACCCTGGAATGACCCTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 72 bp | TCTGAGGATAGGCTTAGGGAGGGACCCTGTCAGCACTaGGATCCAGAGGCTCAGAGTCAGTCCAAGACGGAG | + |
|
Preference number: 6 (lower is better) Translates to: SEDRLREGPCQH*DPEAQSQSKTE Trigger: CTCCGTCTTGGACTGACTCTGAGCCTCTGGATCCCAGTGCTGACAGGGTCCCTCCCTAAGCCTATCCTCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 72 bp | CTGAAGTTACCACAGGGCTGGCTTGGGCTAAAAGGCTaGGTGTCCAGTAGTGTCCTGTCACCACCAGCTCCA | + |
|
Preference number: 6 (lower is better) Translates to: LKLPQGWLGLKG*VSSSVLSPPAP Trigger: TGGAGCTGGTGGTGACAGGACACTACTGGACACCCAGCCTTTTAGCCCAAGCCAGCCCTGTGGTAACTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 72 bp | TCTTCCTGGGTGGCAGCAGCTGGGTTGGGCCTCTTCTaGAGTTCTCCTTTCCTGGTTATGGGCTCTTCAGCT | + |
|
Preference number: 6 (lower is better) Translates to: SSWVAAAGLGLF*SSPFLVMGSSA Trigger: AGCTGAAGAGCCCATAACCAGGAAAGGAGAACTCCAGAAGAGGCCCAACCCAGCTGCTGCCACCCAGGAAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CCA 72 bp | CTGGGCATAAGTCTCTCCCTGGGGATCTTCCTCAGGTaGTGTCCAGCTGTTCAGCTCCACTCCATCCTCAGT | + |
|
Preference number: 6 (lower is better) Translates to: LGISLSLGIFLR*CPAVQLHSILS Trigger: ACTGAGGATGGAGTGGAGCTGAACAGCTGGACACCACCTGAGGAAGATCCCCAGGGAGAGACTTATGCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS TCA 72 bp | ATTGGCCTCCAGTGGAGCTACTCACATAGCCCAGTGTaGAGTTGGCCACAGAGAAGCCAGTGTCAGTCTGCT | + |
|
Preference number: 6 (lower is better) Translates to: IGLQWSYSHSPV*SWPQRSQCQSA Trigger: AGCAGACTGACACTGGCTTCTCTGTGGCCAACTTCACACTGGGCTATGTGAGTAGCTCCACTGGAGGCCAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS GCA 72 bp | GCCACAGACACTCCAATGAGAGCCTTCAGGTACATATaGAGTCCACCTAGTGGCATGGACATTGTGGGTGGC | + |
|
Preference number: 6 (lower is better) Translates to: ATDTPMRAFRYI*SPPSGMDIVGG Trigger: GCCACCCACAATGTCCATGCCACTAGGTGGACTGCATATGTACCTGAAGGCTCTCATTGGAGTGTCTGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CAA 90 bp | TCCACTGAAGCATATAGGCTTTCTTCCTGGGTGGCAGCAGCTGGGTaGGGCCTCTTCTGGAGTTCTCCTTTCCTGGTTATGGGCTCTTCA | + |
|
Preference number: 6 (lower is better) Translates to: STEAYRLSSWVAAAG*GLFWSSPFLVMGSS Trigger: TGAAGAGCCCATAACCAGGAAAGGAGAACTCCAGAAGAGGCCCAACCCAGCTGCTGCCACCCAGGAAGAAAGCCTATATGCTTCAGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS TCA 72 bp | GCAGGGGTTGCTGGGCTGATCCCTCCTTGGACAGAATaGAAGTATCCACAGAGTCCATTGACCAACACAGCA | + |
|
Preference number: 6 (lower is better) Translates to: AGVAGLIPPWTE*KYPQSPLTNTA Trigger: TGCTGTGTTGGTCAATGGACTCTGTGGATACTTTCATTCTGTCCAAGGAGGGATCAGCCCAGCAACCCCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CAA 72 bp | CATCCTGGGACTCCCCAGATTCGGCAGCCTGATTGTTaGCTCCTTGGCCCTCTTCTGCTTGTTCATATTCTG | + |
|
Preference number: 6 (lower is better) Translates to: HPGTPQIRQPDC*LLGPLLLVHIL Trigger: CAGAATATGAACAAGCAGAAGAGGGCCAAGGAGCAAACAATCAGGCTGCCGAATCTGGGGAGTCCCAGGATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS GCA 72 bp | GGTGTCCAGCTGTTCAGCTCCACTCCATCCTCAGTTTaGATGTCCTCCACTGAAGCATATAGGCTTTCTTCC | + |
|
Preference number: 6 (lower is better) Translates to: GVQLFSSTPSSV*MSSTEAYRLSS Trigger: GGAAGAAAGCCTATATGCTTCAGTGGAGGACATGCAAACTGAGGATGGAGTGGAGCTGAACAGCTGGACACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CAA 90 bp | CATAGGTCACATCCTGGGACTCCCCAGATTCGGCAGCCTGATTGTTaGCTCCTTGGCCCTCTTCTGCTTGTTCATATTCTGTGTTCAGTT | + |
|
Preference number: 6 (lower is better) Translates to: HRSHPGTPQIRQPDC*LLGPLLLVHILCSV Trigger: AACTGAACACAGAATATGAACAAGCAGAAGAGGGCCAAGGAGCAAACAATCAGGCTGCCGAATCTGGGGAGTCCCAGGATGTGACCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS TCA 72 bp | TTCCTTGGTGAGAATGAATTTATCGTAGGGAAAGTCTaGGGCACAGTGGAGTGTCATGTTCCCTCCAGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: FLGENEFIVGKV*GTVECHVPSSC Trigger: ACAGCTGGAGGGAACATGACACTCCACTGTGCCTCAGACTTTCCCTACGATAAATTCATTCTCACCAAGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS GCA 72 bp | ATAAACAGGGCTCGGTACTGTCCACTAGAAGATATATaGTCTGTGTCCAGTGAGTTGCCGAATTTCTTATCT | + |
|
Preference number: 6 (lower is better) Translates to: INRARYCPLEDI*SVSSELPNFLS Trigger: AGATAAGAAATTCGGCAACTCACTGGACACAGAGCATATATCTTCTAGTGGACAGTACCGAGCCCTGTTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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| CDS CAA 72 bp | TGTCCACTAGAAGATATATGCTCTGTGTCCAGTGAGTaGCCGAATTTCTTATCTTCCTTGGTGAGAATGAAT | + |
|
Preference number: 6 (lower is better) Translates to: CPLEDICSVSSE*PNFLSSLVRMN Trigger: ATTCATTCTCACCAAGGAAGATAAGAAATTCGGCAACTCACTGGACACAGAGCATATATCTTCTAGTGGACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078451.7 |
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